pre-miRNA Information
pre-miRNA hsa-mir-449b   
Genomic Coordinates chr5: 55170646 - 55170742
Description Homo sapiens miR-449b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-449b-5p
Sequence 16| AGGCAGUGUAUUGUUAGCUGGC |37
Evidence Experimental
Experiments Microarray
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8871076 12 COSMIC
COSN17153496 22 COSMIC
COSN31576772 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322925717 3 dbSNP
rs769526811 10 dbSNP
rs10061133 12 dbSNP
rs1431829587 13 dbSNP
rs778042202 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BAZ2A   
Synonyms TIP5, WALp3
Description bromodomain adjacent to zinc finger domain 2A
Transcript NM_013449   
Expression
Putative miRNA Targets on BAZ2A
3'UTR of BAZ2A
(miRNA target sites are highlighted)
>BAZ2A|NM_013449|3'UTR
   1 GGCAAGGGAGGTGGGGAGTCACCTTGTGGCATCTCCCCCCACCTTCCAAACAAAAACCTGCCATTTTCACCTGCTGATGC
  81 TGCCCTGGGTCCAGACTCAAGTCAGATACAACCCTGATTTTTGACCTTGCCCTTGGCAGTGCCCCACATCCTCTTATTCC
 161 TACATCCCTTTCTCCCTTCCCTCCTCTTGCTCCTCAAGTAAGAGGTGCAGAGATGAGGTCCTTCTGGACTAAAAGCCAAA
 241 AAAAGAAAGAAAAAAATAATTTTTCTTTTCTGTTTTATTTGCTAATTAAAAATGGGGAGGGGGAAAGTCGTCCCTACTTC
 321 CTCCTCCCTGCTTCCTCTCCTCCCCTGTACGTGCCCCAGCATTCTGGGGTTATTTAACAATAGCAATAGTTCTAGTGAAT
 401 GTGTGAAACCAAGAAACACTCTGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
 481 CGCGCCGGACACCGGGCCCTGGACATGCTGCTTCCATGTTCAGTCCCTTCCCTGCTTCTCGCTGTCTTTCTTTTCCCACC
 561 TCCCACCCCCCAGTTTTCAGATTTTCTCTCATCCAATAATGTAAAACTATCGTGTACGGGTTCCTCCCTCCTTTTCTCTT
 641 CTCCCAAATCTTTTCCCTTCAAAGGAAAAAAAAATGTTCAGAGGTCCCTGTCTTCTGTCCCCATCTTCCTGCCGATAGCT
 721 ATCCCCTGTATGATGTTGGATGCTCCTCACATGCTGAGTTTCCAGCCTTTTCTGAAACTCAGTAGCTGGGGAGAGGGCAG
 801 GGAGGCTTCCTGGGCCTTCCAGCCTCCTTCCCCACCTCCTTCCCAAACCCTCTTGGGAACTCCTCAGGGACAACTACTGC
 881 TGAGTTTGGGTGCACCCTAAGATGGAGGCCAGGTAGCAATGGGGCCGGCCTCAGAGAGAGCGCTGTGTGTGTGTGTGTGT
 961 GTGTGTGTGTGTGTGTGTGTCGGCCTCAGAGCGCGCTGTGTGTGTGTGTGTGTGTGTCAGCCTCAGAGCGCGCGCTGTGT
1041 GTGTGTGTGTGTGTGCGTGCTTGTGACCCTGTATTGTTTGATAGGATCCATTCAGTTTCCCCAAGTACCTGTTTTCATTC
1121 CCATTTTTCCCATTGTTTAAAACCATCACTTTTTTGTCTTTGGGAAACCACAGGAACAATTTCTCTGGAGACAAGGCTGT
1201 GTCTCTCTCCTGGTCATTTTTGTTCCAGCCTCTTCAGACTGTGCAATCTTTCAGCAGGAACTCCCTCTCTTCTCGGTAGC
1281 TTTGAATCTTAAGCTTCTACGGGAGAGTGGTAGAACTGGATCATTTCCTAATCCCATTTAGTTGTGCTTTTCTTCATTTA
1361 CTTCATACCCCAGGACCCCTTCCCCAGCAGCAGAGACCCTGGAGCACAGGAGAGTAGGGAGGAGGGGTTCTGGGTCCATC
1441 ACTGCCCTACATGTGACTATGTCCAAGTTAAGCCCCCAACACGAGAGGAAAGCTGCTGACTCCCAGCTATAGCCATGGGC
1521 ACTTGGCCCCCTGCTTTTCCTGCTCAGCAGAGCCCCTCCCTTCAGAGATTACGGGTACTTGCACTGGGGAGGTGGCTGCT
1601 GGCTGGCCCAAGCAGAGAGCTGAGGCATCCAAGAAATGTTCCATTGGGGGGTGGGGGTGCCAGGTGAGGTGGAGCATTCC
1681 TTGTATTCTGGCAGCACTGAAGAGCCACTGAAGGGGGTAGGGGCAGTGTAGGTCCTGGGGCAGCCCCTTTATTCCTTTAT
1761 GCCCCTTCTCCCTCATAGCCTATTTCTAAAGTCGCCTTTTCTGTCAGATAAACCTCAAAACTTTTAATTTTATTTGAGAT
1841 TTTTTTTTGCTTTTAAGAGGTGGATTGAAGAATATTTGAATTGACTTTATATTATGCATAAATATTTATATTTTATCTAA
1921 ATAACTGCGCTGTAACAAACTTTGTGTTAGACAGTTGAAACTGTTAGAGTTGGGGGCTCTGCTTTTTCCCCCTGGCAATT
2001 TTCCCCTGGTATAAGATGTGCTAGATTAATTTCATTGTGAGGTGGATGGGGGAGTGAAATTGTGAGGTGGATGGGGGAGT
2081 GAAATCTCCATGGTTCCTGCTTTGTGTTCCTCTCCCAGCTCCATCTCTTTCCCTAGGGACCAGGCACTCATATGGCGGGG
2161 TGGGGTCCTAGCCTCAGTTTGAAGAAGTGGGGGCTGGAGCGGGGTTGGGGGTGGTAGGGATAGGGCATGATCAAAGGGGC
2241 CATTTCTTGCTTTTCTTTCCTCATCTTCACTGCCCCCTTGAGCTAGGTGGATTTTCTCTTCATGACAAGAGTATTTGGTA
2321 GGGAAAGCAGGTTTAAAATAAAAAGACAACCCACCCCCTGCCCTTTTGCTTCCCTCCCATCAGTCTGGTTGACAGGAAGA
2401 AACCACACCATCAACACCAACAAGTTTCTGTGTTCCTTTTACAGCAAAAGGGACTTTTTATATAACCAAATGTGGTGTTT
2481 TAGTGACTTTTTGATAATGTACAGTTTTTTGTGAATTTAAATTTATTTCTTTCTATATTTTTAGGACCAATCTCATTTTT
2561 AATAAGGTTAAAAAGAAAAAAAAAGTCTAGCGAAAAAACTCCTGTTTTTGCCATGTGATGTTCCACAAGTGCAGCTGTAG
2641 AAAAGTGCTTGTCAGTTGTTGAATAAAAAAAACCACATTTGATAGAGATTCAAAAGACTCTGTGTATTCATCTTCCCTTC
2721 TACACACCTGAGGGGGAGACGGCGTTGGGATAGGTATGACTGGCTTAAGAGACCACAGGCAAGGGAACAACAGGGGCTCC
2801 TGTTCCATACCCTCTGTGTGGATGGAAAGGGTCATTAGTGCTCCTGCCTAAATGTCTGGCTGAGTTGCTGGAGCAAAGGG
2881 GGATTCAGTGCATCCAGGTCCTGCCTTGTGAGATGTGGCCCCAGCTTCCTAAGCTGCCACCTCTGTGTTCCTGTCATAGC
2961 AAATATGGGACCATCACCAGCTTACCACTTCCCACTCACGGATAAGACACCAAGACGTAGAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cggucGAUU--GUUAUGUGACGGa 5'
               ||::  | || ||||||| 
Target 5' gggttCTGGGTCCAT-CACTGCCc 3'
1425 - 1447 146.00 -13.50
2
miRNA  3' cggucGAUUGUUAUGUGACGGa 5'
               || |:  | ||||||| 
Target 5' ctttcCTCAT-CTTCACTGCCc 3'
2255 - 2275 144.00 -11.40
3
miRNA  3' cgGUCGAUUGUUAUGUGACGGa 5'
            ||||| ||    |||| || 
Target 5' acCAGCTTAC----CACTTCCc 3'
2976 - 2993 126.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30179995 22 COSMIC
COSN30649886 35 COSMIC
COSN8864039 56 COSMIC
COSN26582766 112 COSMIC
COSN31551486 249 COSMIC
COSN25840489 565 COSMIC
COSN26643206 641 COSMIC
COSN31529094 650 COSMIC
COSN5324395 663 COSMIC
COSN31524433 665 COSMIC
COSN31557045 800 COSMIC
COSN30541042 813 COSMIC
COSN31583982 853 COSMIC
COSN31545688 854 COSMIC
COSN30541031 934 COSMIC
COSN26464964 956 COSMIC
COSN28734508 1050 COSMIC
COSN8586435 1056 COSMIC
COSN8586434 1060 COSMIC
COSN8586433 1061 COSMIC
COSN30541032 1085 COSMIC
COSN24726462 1215 COSMIC
COSN8586432 1360 COSMIC
COSN22064676 1459 COSMIC
COSN8586431 1509 COSMIC
COSN26579310 1529 COSMIC
COSN7374861 1641 COSMIC
COSN1149924 1659 COSMIC
COSN31584121 1716 COSMIC
COSN22900764 1839 COSMIC
COSN22866379 1840 COSMIC
COSN26642151 1887 COSMIC
COSN27890350 1903 COSMIC
COSN31531631 1988 COSMIC
COSN29127840 2161 COSMIC
COSN31590611 2188 COSMIC
COSN31550090 2454 COSMIC
COSN31571405 2529 COSMIC
COSN26584660 2583 COSMIC
COSN31534708 2592 COSMIC
COSN31537932 2744 COSMIC
COSN28766921 2794 COSMIC
COSN31591499 2829 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs757501515 1 dbSNP
rs755887089 3 dbSNP
rs751808465 5 dbSNP
rs1488685658 10 dbSNP
rs1267212191 11 dbSNP
rs377757099 12 dbSNP
rs758827911 13 dbSNP
rs753169300 15 dbSNP
rs765780056 16 dbSNP
rs7970523 25 dbSNP
rs1472153945 29 dbSNP
rs1160991111 30 dbSNP
rs1304069274 30 dbSNP
rs541291566 35 dbSNP
rs1388408364 36 dbSNP
rs1318898495 38 dbSNP
rs1459123939 39 dbSNP
rs773938024 40 dbSNP
rs577151039 41 dbSNP
rs752709754 41 dbSNP
rs775548821 42 dbSNP
rs769881660 43 dbSNP
rs199677708 46 dbSNP
rs1339847640 47 dbSNP
rs1445889322 53 dbSNP
rs867907763 56 dbSNP
rs922618559 57 dbSNP
rs537291849 58 dbSNP
rs570124480 68 dbSNP
rs1366191624 70 dbSNP
rs554722613 76 dbSNP
rs1391490164 79 dbSNP
rs977135231 83 dbSNP
rs952113130 84 dbSNP
rs1028119568 87 dbSNP
rs1259965157 88 dbSNP
rs1278497399 91 dbSNP
rs749370799 109 dbSNP
rs766760944 112 dbSNP
rs986059034 113 dbSNP
rs1449558985 123 dbSNP
rs1255868066 141 dbSNP
rs967915212 142 dbSNP
rs1484453344 146 dbSNP
rs11541997 148 dbSNP
rs970177563 157 dbSNP
rs1256747035 160 dbSNP
rs1401399238 166 dbSNP
rs1024441331 168 dbSNP
rs1204704657 177 dbSNP
rs1022096335 186 dbSNP
rs1389391172 189 dbSNP
rs987895051 195 dbSNP
rs1295625226 197 dbSNP
rs761216218 198 dbSNP
rs1234393860 205 dbSNP
rs773643919 206 dbSNP
rs1274691417 209 dbSNP
rs1034707240 211 dbSNP
rs536751550 213 dbSNP
rs1207352551 227 dbSNP
rs1269348119 228 dbSNP
rs1464925859 235 dbSNP
rs1229029854 236 dbSNP
rs1245797017 244 dbSNP
rs1000264572 245 dbSNP
rs1376785453 253 dbSNP
rs904189721 253 dbSNP
rs1339848702 256 dbSNP
rs1310530456 257 dbSNP
rs1476924376 257 dbSNP
rs1003643257 259 dbSNP
rs904844261 260 dbSNP
rs1397510961 261 dbSNP
rs1024340853 265 dbSNP
rs1412657865 269 dbSNP
rs1306956467 270 dbSNP
rs1005797901 272 dbSNP
rs1049918055 277 dbSNP
rs1393128051 296 dbSNP
rs888623979 302 dbSNP
rs1427501105 303 dbSNP
rs566054542 309 dbSNP
rs547830398 310 dbSNP
rs1329663336 316 dbSNP
rs1168720642 320 dbSNP
rs1289491924 322 dbSNP
rs1329133173 324 dbSNP
rs1227234280 326 dbSNP
rs1265773884 327 dbSNP
rs932430066 335 dbSNP
rs900949505 340 dbSNP
rs1040881195 342 dbSNP
rs1184125659 345 dbSNP
rs1472196210 346 dbSNP
rs1472256691 348 dbSNP
rs930080436 350 dbSNP
rs901291935 351 dbSNP
rs1041125324 355 dbSNP
rs1162850835 366 dbSNP
rs1186061245 371 dbSNP
rs942730816 372 dbSNP
rs1257378466 373 dbSNP
rs1388897003 374 dbSNP
rs1181710273 377 dbSNP
rs1309084072 395 dbSNP
rs939873463 396 dbSNP
rs1276830272 403 dbSNP
rs908451617 411 dbSNP
rs1205914276 425 dbSNP
rs1048314188 433 dbSNP
rs930600945 434 dbSNP
rs920625021 438 dbSNP
rs1353878290 439 dbSNP
rs1207017650 440 dbSNP
rs772409344 447 dbSNP
rs1263545933 458 dbSNP
rs986453968 468 dbSNP
rs1246906788 481 dbSNP
rs528382424 482 dbSNP
rs1186995858 483 dbSNP
rs748575086 484 dbSNP
rs775053942 486 dbSNP
rs769449419 487 dbSNP
rs187968206 490 dbSNP
rs552346754 493 dbSNP
rs1305065575 494 dbSNP
rs1380576591 496 dbSNP
rs1396083071 498 dbSNP
rs981875617 500 dbSNP
rs969498585 516 dbSNP
rs1380116783 518 dbSNP
rs777768517 534 dbSNP
rs780783137 539 dbSNP
rs1005772468 540 dbSNP
rs753742422 541 dbSNP
rs952942218 547 dbSNP
rs1257670007 548 dbSNP
rs530659554 548 dbSNP
rs1387952232 555 dbSNP
rs1284455792 558 dbSNP
rs994327148 564 dbSNP
rs1459948399 565 dbSNP
rs1389814125 566 dbSNP
rs563508205 567 dbSNP
rs1178749394 568 dbSNP
rs1360237169 569 dbSNP
rs1466036368 570 dbSNP
rs1158947472 572 dbSNP
rs1301611763 572 dbSNP
rs1403193184 572 dbSNP
rs1471835225 573 dbSNP
rs1254191558 579 dbSNP
rs1364070391 582 dbSNP
rs1212571886 588 dbSNP
rs1000468734 591 dbSNP
rs901335593 592 dbSNP
rs547930774 593 dbSNP
rs529755111 596 dbSNP
rs1006938783 600 dbSNP
rs1265445328 608 dbSNP
rs1209488493 609 dbSNP
rs1466281780 609 dbSNP
rs1247620190 610 dbSNP
rs1463760089 611 dbSNP
rs569194528 612 dbSNP
rs1043032525 617 dbSNP
rs946631519 620 dbSNP
rs1414888218 623 dbSNP
rs915183101 627 dbSNP
rs1052339016 633 dbSNP
rs1320709470 635 dbSNP
rs1387445351 638 dbSNP
rs1294934515 644 dbSNP
rs765363133 644 dbSNP
rs1226289471 664 dbSNP
rs1330962067 665 dbSNP
rs935185885 666 dbSNP
rs927815711 668 dbSNP
rs1279570201 671 dbSNP
rs1281270714 674 dbSNP
rs36027347 675 dbSNP
rs1435397069 679 dbSNP
rs1229071906 681 dbSNP
rs982270916 684 dbSNP
rs969137334 689 dbSNP
rs1315204858 690 dbSNP
rs540653585 693 dbSNP
rs1325007135 701 dbSNP
rs1488341570 703 dbSNP
rs1449828117 707 dbSNP
rs1389002371 713 dbSNP
rs1473242383 714 dbSNP
rs1159077582 721 dbSNP
rs931259864 723 dbSNP
rs983774807 724 dbSNP
rs1044385411 725 dbSNP
rs948764108 728 dbSNP
rs952370914 734 dbSNP
rs917327144 743 dbSNP
rs1352252671 745 dbSNP
rs1410289712 752 dbSNP
rs1287664952 763 dbSNP
rs1348569279 785 dbSNP
rs1230140826 792 dbSNP
rs1290831612 795 dbSNP
rs992883776 809 dbSNP
rs1455923471 810 dbSNP
rs1414665666 816 dbSNP
rs956182604 821 dbSNP
rs1159365372 824 dbSNP
rs1231699452 826 dbSNP
rs924814617 831 dbSNP
rs1183150683 833 dbSNP
rs577116743 835 dbSNP
rs1375964691 845 dbSNP
rs1161290923 850 dbSNP
rs994377990 856 dbSNP
rs1372117202 862 dbSNP
rs1430191960 867 dbSNP
rs1307295639 873 dbSNP
rs1333958198 875 dbSNP
rs746954240 876 dbSNP
rs755871074 879 dbSNP
rs1019744585 882 dbSNP
rs373035110 883 dbSNP
rs1247273936 889 dbSNP
rs1300120555 895 dbSNP
rs1343265037 905 dbSNP
rs565479170 919 dbSNP
rs1007397419 920 dbSNP
rs1271481800 922 dbSNP
rs1444696701 923 dbSNP
rs78884607 926 dbSNP
rs1466083986 927 dbSNP
rs1443497090 930 dbSNP
rs61939877 939 dbSNP
rs1391665163 941 dbSNP
rs182401345 941 dbSNP
rs1011612551 942 dbSNP
rs1342491809 943 dbSNP
rs1319369969 944 dbSNP
rs1435178669 945 dbSNP
rs867748944 945 dbSNP
rs1300051778 954 dbSNP
rs140158716 954 dbSNP
rs1233279953 957 dbSNP
rs1019335211 961 dbSNP
rs1363848706 965 dbSNP
rs1320396007 970 dbSNP
rs1433616657 971 dbSNP
rs61939876 976 dbSNP
rs1391276174 979 dbSNP
rs763796453 980 dbSNP
rs1192028328 981 dbSNP
rs1201274496 981 dbSNP
rs1220261769 981 dbSNP
rs1249491827 981 dbSNP
rs1268860367 981 dbSNP
rs1278566638 981 dbSNP
rs1347588801 981 dbSNP
rs1371069676 981 dbSNP
rs1460452879 981 dbSNP
rs1478897615 981 dbSNP
rs1491400381 981 dbSNP
rs35960815 981 dbSNP
rs71081383 981 dbSNP
rs749192307 981 dbSNP
rs750995317 981 dbSNP
rs866517157 981 dbSNP
rs79769173 982 dbSNP
rs1259268078 983 dbSNP
rs536357599 983 dbSNP
rs1319452874 984 dbSNP
rs1414287850 985 dbSNP
rs1400272048 986 dbSNP
rs1174545300 987 dbSNP
rs1454711859 988 dbSNP
rs1389703154 990 dbSNP
rs1186578579 991 dbSNP
rs1394948735 991 dbSNP
rs1453174755 991 dbSNP
rs1451306519 992 dbSNP
rs191031586 993 dbSNP
rs1242452895 994 dbSNP
rs935195709 995 dbSNP
rs1209117357 996 dbSNP
rs1210212644 997 dbSNP
rs1237751534 997 dbSNP
rs1258555503 997 dbSNP
rs1289546673 997 dbSNP
rs1335789845 997 dbSNP
rs1412156853 997 dbSNP
rs1459829781 997 dbSNP
rs1184197570 998 dbSNP
rs1252494404 998 dbSNP
rs1440509323 998 dbSNP
rs1280230091 999 dbSNP
rs1211163897 1000 dbSNP
rs1340843835 1001 dbSNP
rs1294844973 1002 dbSNP
rs1163189475 1004 dbSNP
rs1226813227 1004 dbSNP
rs1367920306 1006 dbSNP
rs1271305305 1008 dbSNP
rs1402502567 1010 dbSNP
rs927801683 1011 dbSNP
rs1357785135 1013 dbSNP
rs1003983746 1015 dbSNP
rs1336395719 1017 dbSNP
rs1171439081 1018 dbSNP
rs1258281191 1018 dbSNP
rs1304324012 1018 dbSNP
rs1313957074 1018 dbSNP
rs1341751445 1018 dbSNP
rs781134279 1018 dbSNP
rs796428343 1018 dbSNP
rs12296335 1019 dbSNP
rs1370000275 1020 dbSNP
rs1383656677 1021 dbSNP
rs1166834783 1022 dbSNP
rs1431740411 1025 dbSNP
rs1420082857 1027 dbSNP
rs1169684899 1028 dbSNP
rs1181223231 1028 dbSNP
rs1046206222 1029 dbSNP
rs1354456316 1029 dbSNP
rs1305129605 1030 dbSNP
rs947863233 1031 dbSNP
rs572609088 1032 dbSNP
rs916362782 1033 dbSNP
rs1434061612 1034 dbSNP
rs186129188 1034 dbSNP
rs952422299 1035 dbSNP
rs1225085534 1036 dbSNP
rs1271824426 1036 dbSNP
rs1295942673 1036 dbSNP
rs1306719986 1036 dbSNP
rs1491265976 1036 dbSNP
rs1491512276 1036 dbSNP
rs1241510404 1037 dbSNP
rs1466468684 1037 dbSNP
rs374170790 1037 dbSNP
rs1189465062 1038 dbSNP
rs1419187014 1039 dbSNP
rs1427133192 1039 dbSNP
rs1206615371 1041 dbSNP
rs1307580258 1043 dbSNP
rs1259321868 1045 dbSNP
rs1274237809 1045 dbSNP
rs1228316266 1046 dbSNP
rs201469429 1047 dbSNP
rs1295552185 1048 dbSNP
rs1415592883 1049 dbSNP
rs1048212961 1050 dbSNP
rs1350058824 1051 dbSNP
rs995770845 1052 dbSNP
rs74095013 1054 dbSNP
rs1303283781 1055 dbSNP
rs1222974997 1056 dbSNP
rs1261261257 1056 dbSNP
rs1324260452 1056 dbSNP
rs138865943 1056 dbSNP
rs202206071 1056 dbSNP
rs56185332 1056 dbSNP
rs761396302 1056 dbSNP
rs1365914549 1057 dbSNP
rs1355192339 1058 dbSNP
rs1230189434 1060 dbSNP
rs867769098 1060 dbSNP
rs1020217200 1061 dbSNP
rs1163986826 1063 dbSNP
rs1403596999 1068 dbSNP
rs1220782956 1071 dbSNP
rs75648492 1079 dbSNP
rs1165434598 1083 dbSNP
rs954340554 1084 dbSNP
rs1249088574 1086 dbSNP
rs948691034 1097 dbSNP
rs1183899509 1098 dbSNP
rs895825913 1109 dbSNP
rs539083138 1114 dbSNP
rs1385526549 1119 dbSNP
rs1021751871 1129 dbSNP
rs373359351 1136 dbSNP
rs1011663381 1137 dbSNP
rs891803439 1148 dbSNP
rs868197404 1151 dbSNP
rs1221442730 1158 dbSNP
rs1410399254 1159 dbSNP
rs934730631 1160 dbSNP
rs1352795998 1163 dbSNP
rs1450342560 1169 dbSNP
rs924711767 1182 dbSNP
rs190233546 1186 dbSNP
rs552146933 1187 dbSNP
rs1244226271 1194 dbSNP
rs565196470 1195 dbSNP
rs1300186261 1196 dbSNP
rs906474766 1201 dbSNP
rs947575672 1203 dbSNP
rs1046732337 1207 dbSNP
rs765892607 1208 dbSNP
rs975664863 1228 dbSNP
rs537355252 1236 dbSNP
rs1475632489 1237 dbSNP
rs569717313 1246 dbSNP
rs1417355113 1252 dbSNP
rs1470988801 1252 dbSNP
rs1048137039 1255 dbSNP
rs1286613557 1263 dbSNP
rs142527594 1271 dbSNP
rs918263580 1275 dbSNP
rs1430516961 1276 dbSNP
rs1347822709 1284 dbSNP
rs1224813836 1290 dbSNP
rs1019304066 1293 dbSNP
rs972346651 1300 dbSNP
rs529718434 1301 dbSNP
rs758200073 1302 dbSNP
rs559068014 1309 dbSNP
rs1447341943 1312 dbSNP
rs1192275855 1316 dbSNP
rs1240280153 1332 dbSNP
rs1481336636 1334 dbSNP
rs1064244 1340 dbSNP
rs986108327 1341 dbSNP
rs1027190599 1346 dbSNP
rs1468325082 1352 dbSNP
rs185778274 1361 dbSNP
rs1400481575 1368 dbSNP
rs1316768920 1376 dbSNP
rs181604169 1380 dbSNP
rs905035182 1382 dbSNP
rs189193634 1392 dbSNP
rs1409562222 1395 dbSNP
rs1013466555 1398 dbSNP
rs956085427 1402 dbSNP
rs1262108883 1408 dbSNP
rs1351029678 1409 dbSNP
rs1031743010 1410 dbSNP
rs148399689 1421 dbSNP
rs1281807290 1427 dbSNP
rs1490785077 1437 dbSNP
rs576692851 1439 dbSNP
rs907190416 1440 dbSNP
rs1223079624 1442 dbSNP
rs1268147068 1444 dbSNP
rs934695814 1455 dbSNP
rs1184152477 1459 dbSNP
rs1435598901 1465 dbSNP
rs1024932476 1477 dbSNP
rs1012540863 1483 dbSNP
rs894992782 1485 dbSNP
rs1419353316 1491 dbSNP
rs1469759197 1492 dbSNP
rs1423817375 1493 dbSNP
rs1188906778 1496 dbSNP
rs1367796013 1504 dbSNP
rs1489187223 1509 dbSNP
rs1255379980 1516 dbSNP
rs1364314980 1521 dbSNP
rs903258493 1528 dbSNP
rs1308431550 1530 dbSNP
rs1048189216 1537 dbSNP
rs931080771 1539 dbSNP
rs947539441 1540 dbSNP
rs921450811 1541 dbSNP
rs896930560 1548 dbSNP
rs1266691013 1549 dbSNP
rs1037174110 1554 dbSNP
rs943751069 1558 dbSNP
rs373031616 1565 dbSNP
rs1489859376 1566 dbSNP
rs1197494531 1573 dbSNP
rs1251264147 1584 dbSNP
rs912210389 1585 dbSNP
rs1317792208 1608 dbSNP
rs1437341066 1609 dbSNP
rs944258810 1611 dbSNP
rs755264013 1622 dbSNP
rs535527183 1631 dbSNP
rs1217486470 1636 dbSNP
rs1163419423 1641 dbSNP
rs575974422 1644 dbSNP
rs951156334 1646 dbSNP
rs561311758 1647 dbSNP
rs990341429 1648 dbSNP
rs969228829 1650 dbSNP
rs1434353111 1651 dbSNP
rs1013394443 1652 dbSNP
rs1023409943 1652 dbSNP
rs1319718577 1653 dbSNP
rs78470960 1656 dbSNP
rs1251850341 1657 dbSNP
rs924725342 1660 dbSNP
rs1338793649 1673 dbSNP
rs1290455059 1697 dbSNP
rs1194208077 1709 dbSNP
rs1245194511 1714 dbSNP
rs572571722 1714 dbSNP
rs1358166134 1717 dbSNP
rs1173537547 1718 dbSNP
rs971426704 1721 dbSNP
rs1171693997 1723 dbSNP
rs1373055551 1728 dbSNP
rs1461035138 1731 dbSNP
rs1023356303 1751 dbSNP
rs1012180942 1754 dbSNP
rs1012088501 1762 dbSNP
rs1434333673 1768 dbSNP
rs1335699326 1775 dbSNP
rs899946659 1780 dbSNP
rs959256067 1783 dbSNP
rs1296184147 1785 dbSNP
rs1325851484 1786 dbSNP
rs1026837690 1794 dbSNP
rs1449447836 1808 dbSNP
rs1246545549 1812 dbSNP
rs1207224657 1814 dbSNP
rs912811940 1819 dbSNP
rs1486412708 1824 dbSNP
rs1255559814 1826 dbSNP
rs1187531336 1829 dbSNP
rs1487039702 1829 dbSNP
rs1047771835 1833 dbSNP
rs1427192302 1836 dbSNP
rs919606266 1836 dbSNP
rs929621041 1836 dbSNP
rs973791768 1837 dbSNP
rs545641895 1840 dbSNP
rs995327196 1840 dbSNP
rs187426997 1842 dbSNP
rs1455146447 1844 dbSNP
rs1289160624 1849 dbSNP
rs1398012678 1849 dbSNP
rs916368984 1849 dbSNP
rs991943381 1854 dbSNP
rs1227532590 1863 dbSNP
rs896984298 1864 dbSNP
rs1297663380 1868 dbSNP
rs1299446175 1886 dbSNP
rs1382516467 1889 dbSNP
rs554348689 1895 dbSNP
rs1216779620 1896 dbSNP
rs1260448571 1901 dbSNP
rs1487525438 1908 dbSNP
rs1225323241 1917 dbSNP
rs1270288826 1925 dbSNP
rs1378179366 1927 dbSNP
rs1036821796 1928 dbSNP
rs556515027 1929 dbSNP
rs116345318 1939 dbSNP
rs967376170 1949 dbSNP
rs1344341810 1950 dbSNP
rs756912824 1964 dbSNP
rs1427303757 1967 dbSNP
rs1291793216 1970 dbSNP
rs1371798642 1992 dbSNP
rs1375638486 1993 dbSNP
rs1022032044 2003 dbSNP
rs1224494938 2012 dbSNP
rs1351927615 2015 dbSNP
rs932287102 2015 dbSNP
rs914855329 2026 dbSNP
rs777033145 2030 dbSNP
rs771257168 2033 dbSNP
rs768012212 2041 dbSNP
rs934855840 2042 dbSNP
rs536176788 2048 dbSNP
rs924736365 2049 dbSNP
rs1008359280 2054 dbSNP
rs556543785 2056 dbSNP
rs536931012 2057 dbSNP
rs1204459243 2062 dbSNP
rs1340153370 2071 dbSNP
rs144517803 2073 dbSNP
rs377256673 2076 dbSNP
rs971861969 2078 dbSNP
rs762103637 2085 dbSNP
rs537225626 2086 dbSNP
rs1239310802 2089 dbSNP
rs548078248 2090 dbSNP
rs1310375725 2097 dbSNP
rs1356315345 2100 dbSNP
rs774719150 2110 dbSNP
rs1297804184 2114 dbSNP
rs1375035606 2126 dbSNP
rs1454915673 2134 dbSNP
rs1316094522 2142 dbSNP
rs1359200308 2147 dbSNP
rs1227060482 2150 dbSNP
rs1416213943 2154 dbSNP
rs930236354 2155 dbSNP
rs1307054541 2156 dbSNP
rs920220936 2156 dbSNP
rs1456126301 2160 dbSNP
rs928159900 2161 dbSNP
rs991920088 2162 dbSNP
rs1243476680 2164 dbSNP
rs1398089271 2165 dbSNP
rs982152674 2166 dbSNP
rs952032437 2170 dbSNP
rs1161364998 2176 dbSNP
rs1421631950 2180 dbSNP
rs182328814 2184 dbSNP
rs1170149619 2188 dbSNP
rs1026891389 2189 dbSNP
rs995379513 2191 dbSNP
rs961197054 2200 dbSNP
rs916293801 2203 dbSNP
rs969484120 2205 dbSNP
rs991879340 2212 dbSNP
rs1368221503 2226 dbSNP
rs1163174683 2230 dbSNP
rs1363352059 2234 dbSNP
rs1015808333 2247 dbSNP
rs1214500907 2249 dbSNP
rs1256808505 2253 dbSNP
rs1007990131 2254 dbSNP
rs1476403862 2260 dbSNP
rs377263227 2266 dbSNP
rs550393813 2266 dbSNP
rs1181734578 2275 dbSNP
rs1482113449 2278 dbSNP
rs769291076 2281 dbSNP
rs1196282839 2287 dbSNP
rs1488140484 2298 dbSNP
rs1263649359 2300 dbSNP
rs1234856372 2301 dbSNP
rs1201775719 2303 dbSNP
rs1348119545 2304 dbSNP
rs565545615 2311 dbSNP
rs1185222225 2312 dbSNP
rs1335253977 2316 dbSNP
rs1192882186 2318 dbSNP
rs1475664187 2318 dbSNP
rs1421519008 2326 dbSNP
rs996548660 2327 dbSNP
rs1177386063 2328 dbSNP
rs892805967 2335 dbSNP
rs1413117154 2339 dbSNP
rs1226249170 2342 dbSNP
rs1320613210 2345 dbSNP
rs1346173995 2345 dbSNP
rs1430583298 2349 dbSNP
rs1276895826 2350 dbSNP
rs74095012 2352 dbSNP
rs1224875809 2354 dbSNP
rs934867311 2355 dbSNP
rs1385762688 2357 dbSNP
rs1198378983 2359 dbSNP
rs1286022797 2361 dbSNP
rs1447393865 2362 dbSNP
rs1260998402 2364 dbSNP
rs1390585309 2364 dbSNP
rs1324483016 2367 dbSNP
rs1200312890 2369 dbSNP
rs1377142308 2372 dbSNP
rs1477129159 2378 dbSNP
rs1160538363 2379 dbSNP
rs1409127391 2381 dbSNP
rs1419524204 2381 dbSNP
rs1368074757 2383 dbSNP
rs1463280619 2383 dbSNP
rs1419118927 2404 dbSNP
rs924819193 2407 dbSNP
rs1323571326 2410 dbSNP
rs1330018538 2410 dbSNP
rs1230558744 2414 dbSNP
rs1158692261 2415 dbSNP
rs1351096964 2416 dbSNP
rs1239226563 2417 dbSNP
rs1468844173 2419 dbSNP
rs1365578401 2420 dbSNP
rs1490800943 2421 dbSNP
rs1223147824 2422 dbSNP
rs1182574279 2424 dbSNP
rs546158249 2430 dbSNP
rs1184212935 2432 dbSNP
rs759193895 2435 dbSNP
rs1233716729 2437 dbSNP
rs1439461433 2444 dbSNP
rs752079794 2450 dbSNP
rs1157304731 2460 dbSNP
rs1251005015 2461 dbSNP
rs1425785479 2462 dbSNP
rs950225018 2467 dbSNP
rs1163219514 2469 dbSNP
rs1215496189 2470 dbSNP
rs553574694 2471 dbSNP
rs112462490 2472 dbSNP
rs1377267339 2473 dbSNP
rs1445586435 2477 dbSNP
rs1206402713 2478 dbSNP
rs930682463 2482 dbSNP
rs1361356361 2483 dbSNP
rs1246573892 2487 dbSNP
rs1264836915 2493 dbSNP
rs1352338248 2499 dbSNP
rs1354311299 2500 dbSNP
rs1197690594 2502 dbSNP
rs1251515385 2510 dbSNP
rs1245305588 2511 dbSNP
rs1457433706 2511 dbSNP
rs775933407 2511 dbSNP
rs1445658091 2518 dbSNP
rs920555497 2525 dbSNP
rs1231812529 2529 dbSNP
rs1169075066 2532 dbSNP
rs1328851202 2533 dbSNP
rs768888513 2535 dbSNP
rs1328909611 2536 dbSNP
rs1384687418 2538 dbSNP
rs1301873457 2549 dbSNP
rs1311904634 2550 dbSNP
rs533705738 2551 dbSNP
rs1338701904 2554 dbSNP
rs1229531042 2562 dbSNP
rs1258731686 2568 dbSNP
rs1317401921 2570 dbSNP
rs1196946979 2574 dbSNP
rs1443829886 2575 dbSNP
rs1254515253 2585 dbSNP
rs1430753224 2585 dbSNP
rs1462032768 2585 dbSNP
rs150560035 2585 dbSNP
rs3041374 2585 dbSNP
rs1395644733 2586 dbSNP
rs1423672305 2590 dbSNP
rs973967909 2591 dbSNP
rs1399353272 2592 dbSNP
rs1466357153 2593 dbSNP
rs1387355641 2598 dbSNP
rs1383803274 2608 dbSNP
rs1159382005 2616 dbSNP
rs1477703611 2619 dbSNP
rs1393423426 2629 dbSNP
rs1312921642 2631 dbSNP
rs1209698794 2633 dbSNP
rs1254582315 2635 dbSNP
rs1195397839 2645 dbSNP
rs1263165326 2646 dbSNP
rs1487669658 2647 dbSNP
rs1190961318 2651 dbSNP
rs1430797966 2653 dbSNP
rs961560711 2655 dbSNP
rs532096486 2661 dbSNP
rs1454684176 2662 dbSNP
rs1433354395 2663 dbSNP
rs1174948119 2665 dbSNP
rs374782971 2665 dbSNP
rs1247374846 2669 dbSNP
rs113902268 2672 dbSNP
rs112145410 2673 dbSNP
rs11324344 2673 dbSNP
rs1375684919 2673 dbSNP
rs398019726 2673 dbSNP
rs1298713826 2675 dbSNP
rs201224590 2675 dbSNP
rs1359894923 2676 dbSNP
rs1398073787 2678 dbSNP
rs1304969776 2681 dbSNP
rs1368421866 2682 dbSNP
rs571119877 2683 dbSNP
rs772240047 2684 dbSNP
rs866083173 2684 dbSNP
rs866126459 2687 dbSNP
rs373207432 2692 dbSNP
rs1448531504 2696 dbSNP
rs1015444979 2700 dbSNP
rs1285926337 2702 dbSNP
rs968356845 2702 dbSNP
rs1022245966 2706 dbSNP
rs987066861 2709 dbSNP
rs1284436695 2711 dbSNP
rs1488541734 2713 dbSNP
rs955227362 2713 dbSNP
rs549785279 2717 dbSNP
rs1028530514 2720 dbSNP
rs1420645450 2722 dbSNP
rs996559617 2723 dbSNP
rs1158953087 2725 dbSNP
rs1281905208 2730 dbSNP
rs892816027 2731 dbSNP
rs1032652166 2734 dbSNP
rs1417730382 2735 dbSNP
rs763766971 2736 dbSNP
rs1008326741 2737 dbSNP
rs903458671 2738 dbSNP
rs1045965367 2740 dbSNP
rs950296027 2741 dbSNP
rs555721668 2743 dbSNP
rs894639535 2744 dbSNP
rs1055806329 2750 dbSNP
rs1297545346 2752 dbSNP
rs1375178103 2752 dbSNP
rs994383293 2758 dbSNP
rs898742075 2761 dbSNP
rs930693844 2763 dbSNP
rs1328572042 2765 dbSNP
rs1321777690 2767 dbSNP
rs1220268310 2778 dbSNP
rs1263169610 2780 dbSNP
rs1038620508 2782 dbSNP
rs947691175 2789 dbSNP
rs894828856 2791 dbSNP
rs1437637641 2793 dbSNP
rs144260932 2794 dbSNP
rs1414521272 2796 dbSNP
rs1404836452 2799 dbSNP
rs561675168 2802 dbSNP
rs773505412 2811 dbSNP
rs940683632 2814 dbSNP
rs908488982 2816 dbSNP
rs1330971951 2817 dbSNP
rs1454964792 2822 dbSNP
rs1285294483 2824 dbSNP
rs986733753 2825 dbSNP
rs1227117605 2830 dbSNP
rs955386620 2848 dbSNP
rs1309896639 2856 dbSNP
rs140517636 2858 dbSNP
rs1389415368 2860 dbSNP
rs1184709998 2865 dbSNP
rs1257086843 2874 dbSNP
rs1476267788 2876 dbSNP
rs1456266970 2881 dbSNP
rs772128195 2882 dbSNP
rs974664903 2887 dbSNP
rs957087793 2892 dbSNP
rs1018303716 2897 dbSNP
rs1032745620 2900 dbSNP
rs1425820520 2903 dbSNP
rs147184305 2915 dbSNP
rs770472826 2924 dbSNP
rs560672009 2927 dbSNP
rs902839559 2928 dbSNP
rs955436332 2932 dbSNP
rs1335203098 2941 dbSNP
rs1210920076 2955 dbSNP
rs1340864179 2959 dbSNP
rs143755262 2964 dbSNP
rs1446408415 2965 dbSNP
rs1272843657 2966 dbSNP
rs1341811675 2967 dbSNP
rs1277176360 2969 dbSNP
rs1025015042 2970 dbSNP
rs1341899955 2973 dbSNP
rs1025768154 2975 dbSNP
rs1279011717 2977 dbSNP
rs1441667329 2985 dbSNP
rs1207899716 2991 dbSNP
rs746507371 2991 dbSNP
rs994706090 2992 dbSNP
rs1488652615 2997 dbSNP
rs184495493 2999 dbSNP
rs1012472820 3000 dbSNP
rs1017575812 3000 dbSNP
rs1173405165 3008 dbSNP
rs895425970 3010 dbSNP
rs1056044202 3016 dbSNP
rs772159682 3017 dbSNP
rs1399937719 3023 dbSNP
rs939053936 3023 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000379441.3 | 3UTR | CCAUUUCUUGCUUUUCUUUCCUCAUCUUCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.703 3.7e-3 0.626 1.1e-2 13 Click to see details
GSE28544 Breast cancer 0.454 1.3e-2 0.598 1.0e-3 24 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.676 3.3e-2 -0.786 1.0e-2 8 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.363 3.7e-2 -0.071 3.7e-1 25 Click to see details
GSE21687 Ependynoma primary tumors -0.197 5.9e-2 -0.196 6.0e-2 64 Click to see details
GSE21849 B cell lymphoma 0.262 8.5e-2 0.296 5.9e-2 29 Click to see details
GSE14794 Lymphoblastoid cells -0.122 1.3e-1 -0.111 1.5e-1 90 Click to see details
GSE42095 Differentiated embryonic stem cells 0.176 2.1e-1 0.216 1.6e-1 23 Click to see details
GSE27834 Pluripotent stem cells 0.196 2.3e-1 -0.006 4.9e-1 16 Click to see details
GSE19783 ER- ER- breast cancer -0.072 2.6e-1 -0.085 2.3e-1 79 Click to see details
GSE32688 Pancreatic cancer -0.107 2.8e-1 -0.023 4.5e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.094 3.3e-1 -0.072 3.7e-1 25 Click to see details
GSE38226 Liver fibrosis 0.074 3.7e-1 -0.281 1.1e-1 21 Click to see details
GSE19536 Breast cancer -0.021 4.2e-1 -0.020 4.2e-1 100 Click to see details
GSE19350 CNS germ cell tumors 0.064 4.2e-1 -0.084 4.0e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells 0.038 4.3e-1 0.174 2.1e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.038 4.4e-1 0.069 3.9e-1 20 Click to see details
GSE17306 Multiple myeloma 0.006 4.8e-1 0.125 2.0e-1 49 Click to see details
GSE17498 Multiple myeloma -0.006 4.9e-1 -0.206 1.0e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.007 4.9e-1 0.296 1.0e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.908 0.14 1.000 0.5 3 Click to see details
UCEC -0.412 0.16 -0.476 0.12 8 Click to see details
BRCA 0.354 0.32 0.400 0.3 4 Click to see details
LUSC -0.007 0.5 0.400 0.3 4 Click to see details
LUSC -0.007 0.5 0.400 0.3 4 Click to see details
LUSC -0.007 0.5 0.400 0.3 4 Click to see details
LUSC -0.007 0.5 0.400 0.3 4 Click to see details
LUSC -0.007 0.5 0.400 0.3 4 Click to see details
109 hsa-miR-449b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006349 SIRT1 sirtuin 1 2 1
MIRT006350 CCNE2 cyclin E2 4 3
MIRT006351 MET MET proto-oncogene, receptor tyrosine kinase 2 1
MIRT006352 GMNN geminin, DNA replication inhibitor 2 1
MIRT006353 HDAC1 histone deacetylase 1 2 1
MIRT016137 CDK4 cyclin dependent kinase 4 1 1
MIRT016138 CDC25A cell division cycle 25A 2 1
MIRT016139 CDK6 cyclin dependent kinase 6 4 3
MIRT057740 ZDHHC16 zinc finger DHHC-type containing 16 2 2
MIRT078636 FAM104A family with sequence similarity 104 member A 2 2
MIRT100407 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT115552 MAZ MYC associated zinc finger protein 2 2
MIRT130146 TXNIP thioredoxin interacting protein 2 4
MIRT142254 DCTN5 dynactin subunit 5 2 2
MIRT143724 CCL22 C-C motif chemokine ligand 22 2 2
MIRT168101 E2F3 E2F transcription factor 3 2 2
MIRT169809 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT183694 MDM4 MDM4, p53 regulator 2 2
MIRT198922 SMAD4 SMAD family member 4 2 2
MIRT202950 TSN translin 2 4
MIRT221565 CBX3 chromobox 3 2 2
MIRT253418 EVI5L ecotropic viral integration site 5 like 2 2
MIRT294759 ZNF551 zinc finger protein 551 2 4
MIRT307053 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT331273 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT372293 UBXN2B UBX domain protein 2B 2 2
MIRT374317 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT445817 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT447158 MFSD8 major facilitator superfamily domain containing 8 2 2
MIRT447823 CTIF cap binding complex dependent translation initiation factor 2 2
MIRT448798 GMFB glia maturation factor beta 2 2
MIRT451580 HIRIP3 HIRA interacting protein 3 2 2
MIRT452679 GPR156 G protein-coupled receptor 156 2 2
MIRT453158 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT453634 SLC4A2 solute carrier family 4 member 2 2 2
MIRT455384 PLA2G2D phospholipase A2 group IID 2 2
MIRT456958 SPAM1 sperm adhesion molecule 1 2 2
MIRT462739 EFNB1 ephrin B1 2 2
MIRT464321 UST uronyl 2-sulfotransferase 2 2
MIRT465641 TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 2 10
MIRT466748 SYNGR2 synaptogyrin 2 2 2
MIRT468345 SF3B3 splicing factor 3b subunit 3 2 2
MIRT469324 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT474361 KMT2D lysine methyltransferase 2D 2 2
MIRT475316 IFNLR1 interferon lambda receptor 1 2 2
MIRT477759 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT477824 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478265 DDX19B DEAD-box helicase 19B 2 2
MIRT481042 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT481289 ATXN1L ataxin 1 like 2 2
MIRT482730 COPZ1 coatomer protein complex subunit zeta 1 2 2
MIRT488780 CYTH3 cytohesin 3 2 2
MIRT489578 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489659 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT490527 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492949 NEUROD2 neuronal differentiation 2 2 2
MIRT493154 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT493845 FOXN3 forkhead box N3 2 4
MIRT494743 ARHGAP1 Rho GTPase activating protein 1 2 6
MIRT496491 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT503312 FICD FIC domain containing 2 4
MIRT503507 ZNF623 zinc finger protein 623 2 2
MIRT504182 FAM127B retrotransposon Gag like 8A 2 2
MIRT505010 ZNF644 zinc finger protein 644 2 2
MIRT505352 TMEM167A transmembrane protein 167A 2 2
MIRT505645 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT505710 SESN2 sestrin 2 2 2
MIRT505777 SATB2 SATB homeobox 2 2 6
MIRT506208 PHF19 PHD finger protein 19 2 2
MIRT506251 PEG10 paternally expressed 10 2 2
MIRT507786 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT508005 BCL2L13 BCL2 like 13 2 4
MIRT508857 ZRSR1 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 1 2 4
MIRT510546 XBP1P1 X-box binding protein 1 pseudogene 1 2 4
MIRT511892 GAS1 growth arrest specific 1 2 6
MIRT512907 UBL4A ubiquitin like 4A 2 2
MIRT513600 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT521241 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT521321 RRAGD Ras related GTP binding D 2 4
MIRT525281 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT528650 RWDD2A RWD domain containing 2A 2 4
MIRT535101 PODXL podocalyxin like 2 2
MIRT547752 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT547865 HSPA13 heat shock protein family A (Hsp70) member 13 2 2
MIRT549170 BMP3 bone morphogenetic protein 3 2 2
MIRT550115 SLC35G2 solute carrier family 35 member G2 2 2
MIRT556097 MOAP1 modulator of apoptosis 1 2 2
MIRT557172 HOXA13 homeobox A13 2 2
MIRT557422 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT557931 FAM73A mitoguardin 1 2 2
MIRT568804 VPS37D VPS37D, ESCRT-I subunit 2 2
MIRT571326 TPCN2 two pore segment channel 2 2 2
MIRT572598 PAPLN papilin, proteoglycan like sulfated glycoprotein 2 2
MIRT573437 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT574092 VASN vasorin 2 2
MIRT608688 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT608800 ITGA11 integrin subunit alpha 11 2 4
MIRT610332 SSX5 SSX family member 5 2 2
MIRT613158 DDA1 DET1 and DDB1 associated 1 2 2
MIRT625407 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT636603 CLIC5 chloride intracellular channel 5 2 2
MIRT638573 IER5 immediate early response 5 2 2
MIRT639686 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT677979 ITGB3 integrin subunit beta 3 2 2
MIRT685217 POTED POTE ankyrin domain family member D 2 2
MIRT702570 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT706259 MKLN1 muskelin 1 2 2
MIRT734675 HMGB1 high mobility group box 1 3 0
MIRT736369 HSPA1A heat shock protein family A (Hsp70) member 1A 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-449b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-449b Doxorubicin approved 31703 Quantitative real-time PCR ovarian carcinoma cell line A2780 cells 22340095 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-449b Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-449b Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-449b-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SUIT-2, CAPAN-1)
hsa-miR-449b-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-449b-5p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-449b-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-449b-5p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-449b-5p Panobinostat 6918837 NSC761190 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-449b-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-449b-5p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-449b-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-449b-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-449b-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HeyA8)
hsa-miR-449b-5p Paclitaxel 36314 NSC125973 approved resistant cell line (SKVO3ip1)
hsa-miR-449b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-449b-5p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-449b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-449b-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-449b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-449b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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