miRTarBase - #MIRT481156


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol AVL9   
Synonyms KIAA0241
Description AVL9 cell migration associated
Transcript NM_015060   
Expression
Putative miRNA Targets on AVL9
3'UTR of AVL9
(miRNA target sites are highlighted)		 
>AVL9|NM_015060|3'UTR
   1 GCAAGGCGTCAGAGGCTGCTATTGCTTTCTGAGGTTTAAGTGTCCCCTGTCTGTCTGCTGCTCCCAGGCTGTTACTAGCC
  81 ACAGATCCACAGCAGGGGACCATATGTCGAACTGTTTACATGGATGTTGCTCTAAGTGAATGTTTCGGGATGCCGAAATG
 161 ATGAAATCACAGCCATAGCAGGGATGGCTTTCCAGGTTGGGGTTTCAATTGACTACTTTTATTTCAGTCTGAGCCTGATT
 241 AAAACATACAGTGAACCTTCTAATGAATTTTGAGTTCTGATATTGTACATTGGTTTACTTTAGAAGAGTTTTTACTTATG
 321 TAAATTTTGTTCTGTTTTGGTGTTTGAATATCTAGATGGTCACTGTAATTTATACTTGCTAAAATTAATTTATATTACCA
 401 TTTTCTCTAAAGTTGGCCTTAAAACGTGCTTATAAAGTGAAGGGGTCATACAGTTGGGCCTTCATTATTTTGCTGAATTA
 481 TGTGATGATTTTTTTGCTTTCTACCCACAAAACATTTATTAATTCACTTCCTCCCAGAAACATGAAAGTTAGAGGTGGTA
 561 GTTCTGAGGATTGGGTGTTTTGTTTTACGTTTTTAGTTTGTTCTTTCCACATCCTTAAAAACTTGGTTTCAGACATCAAG
 641 GAGTATCACTGTGCTTTCCTCCTCTTTATAACTGTGCAGGTGGGTGTGCAGAGAAATAGCAGAGTGATGGTTCGATGATA
 721 CTGAAGCAGTTTAACATGAATGTGTCTGTAGGGCAATACTTTCAAAGAAGACCTATGTGTTTATTTTTCAACCGCAGTCA
 801 TGTTGCAGTCTTACAAGCACTTTTTTTTTATTCCAGAGTTTGTGCCATCTGTTTCTCTTTTTTTTTTTGGGGGGGGGGGG
 881 GGGGCGGGGTCTCACTCTATCGCCCAGGCTGGAGTGCAGTGGTGCCATCTCGGCTCACTGCAACCTCCATCTCCCGGGTT
 961 CAAGCAATTCTTGTACCTCAGCCTCCCAAGTAGCTGGGATTATGGACATGCGCCACCATGCCCAGCTAATTATTGTATTT
1041 TTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGATCTCCTGGCCTCAAGTGATCTGCCCGCCTCAGCCTC
1121 TCAAAGTGCTGGGACTACAGGCATGAGCCACTGCGCCTGGCCTGTTTCTTTTTTAAACAGTTTTCTATTGGGTGTTTGCA
1201 GACCTACAGCTTTTCTCGTAGTCTTATTCATAAAGCTTTTCAAAGCACTTAGTCTTCTACTTCCCTAACTGAAAGTCCTC
1281 CTATAATCAATCCCTACCCCCTTCTAGAAGTATCTTAAAAGAAAAGCAAGGTGATTGTAAGTATTAAATAGAAATCTCAT
1361 CTTAGTTTATATTCAGCAAAGTAAGAGGCAAGAGAAGAAAACTGCAGCCTTGACATCTGTCATCTGAGAAAGGATATCTG
1441 GTTTCATGTTAGGCACATACATGCATGTGTGTGCCATCTACTGATGATTTGTACACAGCTGGACCTCGTGTGTTTGCCAT
1521 GCTCAGCTCTCATTTGCTTTTCAAGGATACCTGGGATGGCTGTTCTCAGAGAGTACTTACGGGGAACAGACTGCCTTTTA
1601 GTAACAAGGGATACTTGGGAAATACATTGTGAGTATGATCTATCCCAGATTGCTGGGGAAATAAAGGAGGGCCCTGATTA
1681 TATTTGGTTTATTCCTCACTAAATGTTTAAGAAGTAAATGCTCCCAAGGCATTTGAAATGAACATAGAAACATAATCTAA
1761 ATGTCTCTAAATTTTCCACTTTGTGTTTTCTAAACACAAATTGTATTACTCATTTGAGCATAACTCAAGAATTCAGCGAT
1841 GATAAATTGAAGGGCTGAATGTGAGAACTCCATTAATTCCACTTCTTCCAAGAAAGTTAACCTCAGGAAATGCTGTTTGA
1921 AGAGAAGAAAGTAGTACCAAACAAAAACCTTAAACAGTACTTGAATCTTTTTTGCGCTGAGACTATAAAGAATTCATTCT
2001 AACATCTTGTTTCATAAGGGCCACATCATTCGTTGGAGCATGATAGTGTGATTTGTGTACAATTGTTACCTCTCAGCTGC
2081 TGAAGTTCACACTTCAAGGATCTAGGAGCTCTGTGAGGGGTCGTCCAGCAAGATGCTGATTTGTCTTTCAGTTGGTATGG
2161 TTTCTGTGATCGGGGTAAACTCCCGTCTCCCACTATTCAAAAGCAGCCCAACTCATGCTTTGGAATCCACTGAAATAAAA
2241 ATAGTTACATGAAGTTTAACTTTGCTTTAATATCACTTGTTCCTCATTGAATATACACTTTGATCGGACTTTCTATTAAC
2321 ATTTCTAGCTAAGAGTTTGACTCTTAGTGGTCACTTTACTGACTTTCCAACATAAAACAAGTATCTCAGAAGATACAACT
2401 TTCATCATAGAAATGGTCAAAAGACCATAGCTATATTTCCTTCAGGTTCTGGGAGGTGGAGTTTTTCAAGGAACACTGGC
2481 TGTTGTATTGTTGGCAGGGGCCCCAAGGCAGCTCGCACAATCAAAGGCAGGAAGCCTCACCCCTGGTCCTGTGACCCCCC
2561 CCCCCCACACACACACATACTTCAGGCTTGGATTCTAGGCTCCAAGTGGCCAGCATAGAAGCAGCAGCCTCTCTCCAAAC
2641 CCTGGCTCTGTGAGCCATAGGAACCAGCACTAGGTCATCTTCTGACATAGCCCTGGTGAAGGTGTGTGTGTGTTGGTGGC
2721 CACACTTGCTAAGGCTTTTGTGTCTAAGAATTGAGTATTTGTACCTAGGTGTGAGGGAACCAGGGTCAGCCAGCCTTTTT
2801 CAGATGGCGCCAGGCACACACACTACATCAATGGCTTGCTGGTGGCTTCACCACTATCCAGGTGACTTAAAAGAGTGTTT
2881 GGAAAATGTCCCTGGTATACTTCAATTCCTACTAGACATTGTAATGACAATGGTGTAGGTAAGGAAGAGAGAGTTAAAAC
2961 TACCAGTTGTGGAATAGAAATAGTTGCATGTCCAAAGAAGGCTTAGAATGATTGTGCATATGCAGTTGGCTCACATAACC
3041 AGCATGAACAGTCTCTCCCCAAATCCATTAGTGATTCACTACCCCCCGCCAAGCACAGCCCTAAAACAATTCTCGTCCAC
3121 TTTCCTGTTAAGAAACACAGCAGCAATATACTTTGGCAGCAAACCAGAGCATATGATGTAACTTGCTCAACCTTATCTTC
3201 CTTTCCAAATTCTATACTAAGCATCTGATGTTTTTTAGAATAATTTCCTTTGGAAAGCCAACGAGAAAACAAATTAGGAA
3281 GAGAGAGAAGTGAGAAATTGTTGCATGGCTGAGGAACAAGATGCTTAAAATCTGAATGGAAGTATTTTGAGAGCAGTATT
3361 TCATGTGCTAAGGGTTATAAGAATTCTTTTAGAAAGGGATTAGAATTTTACTCTGCTAGTTACAAGTTTTAAAGTCACGC
3441 TACGGCATTATCACCCTGGCAGGTAGGTTTTGTTATTGTTTTACATTTTGTGAAAAAAAGTTTTGTAGAAGTTACAGCTA
3521 GTGGTCTTTTCCCTCCAGAGCCAGTGATGAGTGTGGGAGCACTTCAGCTCTGTAAGGGGCCAGCGTTCTGACCTTTAACC
3601 ACATGAACTAACCTGCGTCAGCAGTTGCAGAAAGTAGCCTGTTAGGACAGCAGCTGCTAAGCGTTGCCTGGTATTTTAGT
3681 GGGGAGAAGGCTGGGACTCTTCATGGCATCAACACTTGCATGCTCTGAATCTTTGATCAGAGATGAGGTGCCATTTTTGG
3761 CATTTCCACCCCGTCTCGTGGTAGCCTTTAAAAGTGGTAGAAGATGCTGCCCTAATTCCCCGAGGATGATTGTCATTCCA
3841 TGCAGCATAATGTGCCGTGAGGAGTTTTCTCATTCCAGTTCTTTGGACTTCGTAACATTGGAATTGTTTTTCCATAATTT
3921 CCGGCATTCCATAAATATTTGTCAAGGACAAAGAAAAGGAATGTGGATGTTTATTCTTTTCATATGAATGACTTTGTACA
4001 CATGACTTCCTGCTTTCATTATGAAGGAGGGGAAACTAGTTCCCTTGTATGGTAACTCCAAAGTTAAAAAATTGTGCATG
4081 TCTGAGGGGTTGAATATATTTTGTAAAACTCTAAATACATTTGTATTTCTGTGCTGTTCTAAAGTTTACCTTTTTACTTA
4161 TATGAAAGATAACTATATATTTAAATCATGTAAGTGGAACACAGTGTAGGGGGTTTTTCCAATCTTATTTTTCATCAGGT
4241 TCTCACACCCACGTAGTATGCTGCTCAAATTTTTTCGTGTGTGCAAATGTGAACATTTGAACATTTCAGTTAGGTACTGA
4321 GCCAGAAAAGGTAATTGAAGTTTTCAGAAAGCTTCTGTGCTTAGAAAATATTTTGTTGTTTTCTTAAAATATTAGTATTT
4401 TGTAGCTGGAAGAATAAGATCAAGGCTTACATGTTTCAGGCCACTTGGTCACTGGTTCCTGAATTTAGAAAACATTGGAT
4481 TAATGAGTTGGTGAAGGCATTTAGTGGTTACAAAAACAGTTTAAATATTTATGATTAAAGGCTTTTCACAAACCTTTTTA
4561 AAGAAAATTTAGCTGAGAAAACTTAAAAAGTTTTCTAAGGAAGTTTAACTGTGGCACATGTTTTGATCAGAAAGGTAGTT
4641 CTCTTTGCTCTGGTAGTTTTAAAGTTTGTACTAGTTCTTTATTTCTGTTGTTTTTTTAAATTGTTAAAATTATAAATCAC
4721 GTCTAATCATACTGAATTGTAAAACTTGAATTGTATCTTTATTTTAAGCATAAATGAGAATAAAATGATCCTGTTCACCC
4801 TGCCTACAGTTGGACTTGACCTGTCCTAGAAGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' taTCGCCCAGGCTGGAGTGCAGt 3'
 898 - 920 153.00 -18.10
2 
miRNA  3' ucGGUCGGUUGA----GUGUCACGUCu 5'
            :||  :|| |    |||||||:|| 
Target 5' aaTCATGTAAGTGGAACACAGTGTAGg 3'
 4184 - 4210 143.00 -18.40
3 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|||||  |||| ||||| | 
Target 5' ccTCAGCC-TCTCAAAGTGCTGg 3'
 1111 - 1132 140.00 -22.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30519303 16 COSMIC
COSN14285330 19 COSMIC
COSN30542882 34 COSMIC
COSN31597262 58 COSMIC
COSN30533106 67 COSMIC
COSN15623249 93 COSMIC
COSN23021179 109 COSMIC
COSN8300331 139 COSMIC
COSN31559407 147 COSMIC
COSN26678831 188 COSMIC
COSN30140510 191 COSMIC
COSN23591205 933 COSMIC
COSN16860089 1166 COSMIC
COSN9941282 1791 COSMIC
COSN4869117 1964 COSMIC
COSN25681698 1976 COSMIC
COSN31848965 2144 COSMIC
COSN2841515 2273 COSMIC
COSN20699413 2294 COSMIC
COSN32062294 2564 COSMIC
COSN28942453 2565 COSMIC
COSN28980187 2565 COSMIC
COSN27388525 2566 COSMIC
COSN8570349 2566 COSMIC
COSN27496663 2567 COSMIC
COSN24988250 2925 COSMIC
COSN2219819 3093 COSMIC
COSN2219820 3109 COSMIC
COSN17890135 3222 COSMIC
COSN8300332 3257 COSMIC
COSN25399854 3784 COSMIC
COSN30434267 4278 COSMIC
COSN1348625 4305 COSMIC
COSN14597770 4513 COSMIC
COSN7977932 4718 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760913165 8 dbSNP
rs536084075 9 dbSNP
rs1299679626 13 dbSNP
rs754619876 14 dbSNP
rs753919297 19 dbSNP
rs765073062 20 dbSNP
rs1198482163 25 dbSNP
rs1343840974 26 dbSNP
rs369599311 27 dbSNP
rs758094352 29 dbSNP
rs777739739 31 dbSNP
rs746609978 34 dbSNP
rs756984063 35 dbSNP
rs1277396433 45 dbSNP
rs1483622093 47 dbSNP
rs765626699 48 dbSNP
rs1002198579 52 dbSNP
rs780777992 53 dbSNP
rs745364377 54 dbSNP
rs1197809853 58 dbSNP
rs751980013 59 dbSNP
rs1260360662 60 dbSNP
rs1255736773 63 dbSNP
rs887403718 64 dbSNP
rs748723825 65 dbSNP
rs1287074329 66 dbSNP
rs772279374 67 dbSNP
rs773583669 68 dbSNP
rs1334686477 76 dbSNP
rs760823591 77 dbSNP
rs142823827 85 dbSNP
rs1399679838 86 dbSNP
rs1175429351 89 dbSNP
rs776898147 91 dbSNP
rs1470187355 93 dbSNP
rs1348382658 99 dbSNP
rs573096293 100 dbSNP
rs1294202901 101 dbSNP
rs1361445528 102 dbSNP
rs765400453 104 dbSNP
rs755488445 106 dbSNP
rs762969830 109 dbSNP
rs1026412070 110 dbSNP
rs539839883 113 dbSNP
rs1323156995 118 dbSNP
rs984978875 121 dbSNP
rs753034016 129 dbSNP
rs1462935608 130 dbSNP
rs781769486 135 dbSNP
rs564493711 136 dbSNP
rs1485619235 139 dbSNP
rs1241151388 140 dbSNP
rs1266732913 147 dbSNP
rs757181884 148 dbSNP
rs1189913635 149 dbSNP
rs576438835 151 dbSNP
rs1443878170 153 dbSNP
rs943651390 155 dbSNP
rs1198071347 156 dbSNP
rs6462385 158 dbSNP
rs1025189451 169 dbSNP
rs1165828108 171 dbSNP
rs1453025593 176 dbSNP
rs755615352 184 dbSNP
rs777456763 193 dbSNP
rs1408056675 196 dbSNP
rs902760070 197 dbSNP
rs1413566094 198 dbSNP
rs1000153451 200 dbSNP
rs1032598570 202 dbSNP
rs748950001 203 dbSNP
rs1052104826 207 dbSNP
rs1224257232 210 dbSNP
rs1184450442 214 dbSNP
rs1462906694 214 dbSNP
rs1246544517 216 dbSNP
rs892235590 218 dbSNP
rs1448072022 221 dbSNP
rs1287039759 223 dbSNP
rs1351189906 226 dbSNP
rs1018301476 227 dbSNP
rs1313858658 228 dbSNP
rs1246298229 232 dbSNP
rs1384593476 237 dbSNP
rs79646432 238 dbSNP
rs1429836072 240 dbSNP
rs1345707445 247 dbSNP
rs975885432 252 dbSNP
rs1403616573 253 dbSNP
rs1365075054 257 dbSNP
rs1282670215 271 dbSNP
rs1186291590 278 dbSNP
rs2060707 278 dbSNP
rs905102768 284 dbSNP
rs1235793351 289 dbSNP
rs549347529 302 dbSNP
rs1489615389 309 dbSNP
rs1178251413 316 dbSNP
rs1290357646 316 dbSNP
rs983732663 319 dbSNP
rs1034949413 320 dbSNP
rs1418200137 327 dbSNP
rs909147998 339 dbSNP
rs1272117645 343 dbSNP
rs578014273 349 dbSNP
rs896457357 365 dbSNP
rs545211077 366 dbSNP
rs1434176773 367 dbSNP
rs1026382913 384 dbSNP
rs1433710178 385 dbSNP
rs894896888 393 dbSNP
rs1303826970 397 dbSNP
rs1426701976 399 dbSNP
rs574868339 400 dbSNP
rs561621243 405 dbSNP
rs1170025441 409 dbSNP
rs1331851644 410 dbSNP
rs1336988682 411 dbSNP
rs952134497 412 dbSNP
rs1442348089 414 dbSNP
rs1189880306 419 dbSNP
rs949150250 426 dbSNP
rs984968445 427 dbSNP
rs1199501831 432 dbSNP
rs1236139809 439 dbSNP
rs1046188390 442 dbSNP
rs190701044 448 dbSNP
rs902641930 449 dbSNP
rs1346958960 457 dbSNP
rs1307759671 458 dbSNP
rs1274835472 465 dbSNP
rs1221524568 476 dbSNP
rs1322729167 483 dbSNP
rs1283857367 485 dbSNP
rs1406786175 487 dbSNP
rs1348734113 489 dbSNP
rs1297783024 499 dbSNP
rs1200069031 514 dbSNP
rs964909903 514 dbSNP
rs999718605 516 dbSNP
rs976705894 518 dbSNP
rs1174379419 523 dbSNP
rs923560940 526 dbSNP
rs1469669529 538 dbSNP
rs955018739 546 dbSNP
rs987791851 562 dbSNP
rs1430521348 566 dbSNP
rs913641524 572 dbSNP
rs1439595151 577 dbSNP
rs547323480 581 dbSNP
rs946504591 589 dbSNP
rs553941540 590 dbSNP
rs1480749380 604 dbSNP
rs894085211 604 dbSNP
rs1196127654 608 dbSNP
rs572339412 614 dbSNP
rs1460716571 635 dbSNP
rs937869339 644 dbSNP
rs571631263 645 dbSNP
rs896424745 652 dbSNP
rs965423357 654 dbSNP
rs1224460845 661 dbSNP
rs1398219844 662 dbSNP
rs993482979 665 dbSNP
rs772970848 669 dbSNP
rs879229930 675 dbSNP
rs1327612651 680 dbSNP
rs976768508 685 dbSNP
rs1456095547 686 dbSNP
rs146088489 687 dbSNP
rs1157730966 688 dbSNP
rs551032021 692 dbSNP
rs569285643 696 dbSNP
rs1419160553 698 dbSNP
rs1409633841 700 dbSNP
rs1304133733 703 dbSNP
rs1443740832 705 dbSNP
rs1205382812 706 dbSNP
rs887858329 714 dbSNP
rs1260140240 715 dbSNP
rs138851240 723 dbSNP
rs1318824511 738 dbSNP
rs1313123874 743 dbSNP
rs909105711 749 dbSNP
rs1383846510 754 dbSNP
rs765924510 757 dbSNP
rs1017695930 764 dbSNP
rs1289985053 767 dbSNP
rs1453793200 771 dbSNP
rs941999505 780 dbSNP
rs965214090 785 dbSNP
rs997713051 793 dbSNP
rs769823528 794 dbSNP
rs956319456 795 dbSNP
rs923727813 802 dbSNP
rs1185195514 804 dbSNP
rs1216069266 805 dbSNP
rs1260882176 809 dbSNP
rs773482778 809 dbSNP
rs1187058823 813 dbSNP
rs1486864332 816 dbSNP
rs1221922545 821 dbSNP
rs1289639347 821 dbSNP
rs1360438117 824 dbSNP
rs1294225361 826 dbSNP
rs1326234061 830 dbSNP
rs913610495 830 dbSNP
rs554514872 832 dbSNP
rs1254218437 835 dbSNP
rs1384388091 843 dbSNP
rs62467621 845 dbSNP
rs967693077 846 dbSNP
rs1344225535 853 dbSNP
rs1300730978 854 dbSNP
rs1403871734 856 dbSNP
rs1365738407 858 dbSNP
rs1372317969 858 dbSNP
rs1430211317 858 dbSNP
rs1460231948 858 dbSNP
rs368390593 858 dbSNP
rs766018889 858 dbSNP
rs780911929 858 dbSNP
rs1198707238 865 dbSNP
rs1266772809 865 dbSNP
rs1451350413 865 dbSNP
rs1490538882 865 dbSNP
rs1053980176 866 dbSNP
rs1322028163 866 dbSNP
rs1339028237 866 dbSNP
rs61160323 866 dbSNP
rs71559239 866 dbSNP
rs1389286956 867 dbSNP
rs1395383404 867 dbSNP
rs1403729147 867 dbSNP
rs55657575 867 dbSNP
rs769513491 867 dbSNP
rs867669394 867 dbSNP
rs1175646788 868 dbSNP
rs1427048238 868 dbSNP
rs1466999707 868 dbSNP
rs1480782662 868 dbSNP
rs56177100 868 dbSNP
rs1179809139 869 dbSNP
rs1251596334 869 dbSNP
rs1437449676 869 dbSNP
rs55663970 869 dbSNP
rs1419609580 870 dbSNP
rs1224693257 872 dbSNP
rs1460270120 872 dbSNP
rs1374373400 873 dbSNP
rs1267779189 874 dbSNP
rs1448663316 874 dbSNP
rs1475536752 875 dbSNP
rs1167026659 876 dbSNP
rs1420811511 877 dbSNP
rs1462598945 879 dbSNP
rs879158507 880 dbSNP
rs894046344 881 dbSNP
rs1393674293 882 dbSNP
rs1443120493 883 dbSNP
rs1204765658 884 dbSNP
rs1384808864 884 dbSNP
rs1320045535 885 dbSNP
rs879200199 886 dbSNP
rs1349364550 887 dbSNP
rs1279733853 890 dbSNP
rs1228408094 891 dbSNP
rs1380187438 892 dbSNP
rs1277853253 895 dbSNP
rs1316111594 897 dbSNP
rs1342121725 898 dbSNP
rs1235248817 899 dbSNP
rs1274298402 900 dbSNP
rs373894203 902 dbSNP
rs1160572480 903 dbSNP
rs1422947493 905 dbSNP
rs979559858 907 dbSNP
rs926409519 913 dbSNP
rs566333844 915 dbSNP
rs1384907132 916 dbSNP
rs533796960 920 dbSNP
rs937822214 922 dbSNP
rs1240816073 923 dbSNP
rs901139903 927 dbSNP
rs1056326949 932 dbSNP
rs917830433 933 dbSNP
rs1218235610 947 dbSNP
rs376695248 956 dbSNP
rs929246815 957 dbSNP
rs1047679980 958 dbSNP
rs149397799 959 dbSNP
rs1026118974 964 dbSNP
rs951520946 967 dbSNP
rs1192447223 968 dbSNP
rs1260635910 973 dbSNP
rs542829525 975 dbSNP
rs371306719 983 dbSNP
rs1365133395 984 dbSNP
rs1039505995 987 dbSNP
rs1016135477 990 dbSNP
rs78500967 992 dbSNP
rs963554100 995 dbSNP
rs1367751915 997 dbSNP
rs990696498 998 dbSNP
rs916520119 1004 dbSNP
rs1266059322 1006 dbSNP
rs1160284021 1008 dbSNP
rs1195129863 1009 dbSNP
rs1385367968 1012 dbSNP
rs1381479843 1013 dbSNP
rs556210120 1021 dbSNP
rs1323184408 1025 dbSNP
rs1270591227 1027 dbSNP
rs574490287 1027 dbSNP
rs541910609 1028 dbSNP
rs1030491274 1029 dbSNP
rs923666462 1034 dbSNP
rs1280020095 1036 dbSNP
rs935134719 1039 dbSNP
rs1293982103 1042 dbSNP
rs1340007962 1045 dbSNP
rs181600618 1052 dbSNP
rs528710058 1053 dbSNP
rs751926756 1056 dbSNP
rs1010406092 1064 dbSNP
rs1216376114 1066 dbSNP
rs1283372684 1079 dbSNP
rs1021843070 1089 dbSNP
rs373946907 1091 dbSNP
rs998125523 1110 dbSNP
rs1191317115 1111 dbSNP
rs1489248390 1127 dbSNP
rs979142348 1128 dbSNP
rs1047098295 1134 dbSNP
rs1033831415 1135 dbSNP
rs1203468232 1136 dbSNP
rs959184900 1139 dbSNP
rs1201660119 1145 dbSNP
rs1322802432 1151 dbSNP
rs991987937 1152 dbSNP
rs1421592266 1155 dbSNP
rs1183857830 1156 dbSNP
rs185724002 1157 dbSNP
rs917715962 1161 dbSNP
rs190233494 1163 dbSNP
rs760006884 1165 dbSNP
rs983338308 1168 dbSNP
rs909147473 1169 dbSNP
rs745441308 1175 dbSNP
rs1407541013 1178 dbSNP
rs1176144613 1183 dbSNP
rs1434398684 1185 dbSNP
rs1012101234 1188 dbSNP
rs1023545335 1219 dbSNP
rs1439967752 1220 dbSNP
rs1436803666 1222 dbSNP
rs942008472 1225 dbSNP
rs1201602639 1227 dbSNP
rs1460814223 1228 dbSNP
rs1039063893 1233 dbSNP
rs1256523012 1247 dbSNP
rs900577271 1249 dbSNP
rs1313771348 1250 dbSNP
rs970655945 1251 dbSNP
rs982180958 1262 dbSNP
rs1315225278 1266 dbSNP
rs1283775743 1276 dbSNP
rs933461182 1290 dbSNP
rs1051802330 1292 dbSNP
rs11980863 1293 dbSNP
rs989204142 1299 dbSNP
rs183181508 1301 dbSNP
rs755632788 1302 dbSNP
rs1021811974 1306 dbSNP
rs1157801383 1311 dbSNP
rs1239792945 1317 dbSNP
rs1419918894 1318 dbSNP
rs777213883 1323 dbSNP
rs1381855084 1331 dbSNP
rs1181454092 1332 dbSNP
rs1443794906 1338 dbSNP
rs904800137 1338 dbSNP
rs1000930166 1344 dbSNP
rs1033389206 1347 dbSNP
rs1211124651 1353 dbSNP
rs1255087667 1357 dbSNP
rs934280419 1363 dbSNP
rs1481965919 1365 dbSNP
rs1047773303 1369 dbSNP
rs374729931 1371 dbSNP
rs1322718254 1377 dbSNP
rs753393258 1380 dbSNP
rs1439009481 1383 dbSNP
rs756800637 1388 dbSNP
rs1297041831 1406 dbSNP
rs35752488 1408 dbSNP
rs1024742300 1409 dbSNP
rs950507387 1418 dbSNP
rs1400084693 1422 dbSNP
rs1362002472 1423 dbSNP
rs10807861 1436 dbSNP
rs1423722870 1447 dbSNP
rs1368795300 1448 dbSNP
rs753232730 1449 dbSNP
rs1166716140 1461 dbSNP
rs894593175 1467 dbSNP
rs76003102 1470 dbSNP
rs1023511203 1472 dbSNP
rs1358831562 1478 dbSNP
rs532877913 1490 dbSNP
rs745632501 1492 dbSNP
rs1266975644 1500 dbSNP
rs1222062791 1505 dbSNP
rs771905087 1508 dbSNP
rs779955007 1509 dbSNP
rs533763266 1514 dbSNP
rs975147628 1516 dbSNP
rs558412431 1517 dbSNP
rs921918224 1519 dbSNP
rs1373603576 1522 dbSNP
rs59474210 1523 dbSNP
rs1235514421 1525 dbSNP
rs933333771 1527 dbSNP
rs1300787419 1531 dbSNP
rs1385853852 1533 dbSNP
rs1051771263 1534 dbSNP
rs1460277070 1536 dbSNP
rs1422757632 1552 dbSNP
rs1171323048 1553 dbSNP
rs891901596 1554 dbSNP
rs1478819281 1565 dbSNP
rs758889175 1568 dbSNP
rs956372657 1570 dbSNP
rs1310087181 1573 dbSNP
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rs1001383852 4758 dbSNP
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rs895743628 4797 dbSNP
rs1013916913 4804 dbSNP
rs1370929984 4811 dbSNP
rs1170255883 4813 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000318709.4 | 3UTR | GCUGGAGUGCAGUGGUGCCAUCUCGGCUCACUGCAACCUCCAUCUCCCGGGUUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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