miRTarBase - #MIRT481566


—
pre-miRNA Information
pre-miRNA hsa-mir-8055   
Genomic Coordinates chr8: 6622124 - 6622220
Description Homo sapiens miR-8055 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-8055
Sequence 65| CUUUGAGCACAUGAGCAGACGGA |87
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN29106641 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1387051240 1 dbSNP
rs773940954 2 dbSNP
rs1007521391 11 dbSNP
rs1425192922 13 dbSNP
rs1168057456 15 dbSNP
rs79123647 20 dbSNP
rs1049046267 21 dbSNP
rs561312343 22 dbSNP
Putative Targets

Gene Information
Gene Symbol ARIH2   
Synonyms ARI2, TRIAD1
Description ariadne RBR E3 ubiquitin protein ligase 2
Transcript NM_006321   
Expression
Putative miRNA Targets on ARIH2
3'UTR of ARIH2
(miRNA target sites are highlighted)		 
>ARIH2|NM_006321|3'UTR
   1 GTTGGGATGTGGATGTGCCGGGGTGAGGAAGATGTGGCTGCAAGGTCTCCCGGCTGCCATACTGCATGCTGCAGGCTCTG
  81 CCTTTCATGACCCCAGGCAACAGCCAGGGCCCCACTCCTGAGAGACACTGGCAACACCTCTTAGTTGATTTCTGTTTTCT
 161 TCTCTTTTCACTTTTTGTTTCTACCAGGGTAGAGGCCATGTTGAACTGGCCTCTTTTCAGGACTTTTATTTCCCCCTGGA
 241 TGGTTGTTGGGAGGGAGGGAAAGTGTTTTCTGAATGGCTATTAATAGTATTAGATCATTACAACTTATGTAACTTTCAAA
 321 GGTTGTACAATTATACAAAAAAAAAAAAAAGGCAAACTATAGGATAACACAGAGCCCTTTTTGAAAATAAATTGGCATTG
 401 GAGTGTTTTACCCTCTAGCTGTTTTACTTAGAATGTAACATATGCTGCCTACCCACCTCAAAATGTCTGTACTGCAAGAG
 481 GGCCCTGGGCCTCTGCTTTCCATATTCACGTTTGGCCAGAGTTGTAGTCCCAAAGAAGAGCATGGGTGGCAGATGGTAGG
 561 GAATTGAACTGGCCTGTGCAATGGGCATGGAGCACAAGGGGTCACAGCATGCCTCCTGCCTTACCGTGGCAGTACGGAGA
 641 CAGTCCAGAACATGGTCTTCTTGCCACGGGGTGTTGTTGTCTCTGGTGGTGCTGCATGTCTGTGGCTCACCTTTATTCTT
 721 GAAACTGAGGTTTACCTGGATCTGGCTACTGAGGCTAGAGCCCACAGCAGAATGGGGTTGGGCCTGTGGCCCCCCAAACT
 801 AGGGGGTGTGGGTTCATCACAGTGTTGCCTTTTGTCTCCTAAAGATAGGGATCTACTTTTGAAGGGAATTGTTCCTCCCA
 881 AATAAATTTGCTTTACCTTGGTCCTTTCTTTTGTGCCAGTATTCAAGTGGTATAGCTCTGAGCAGGGTCACATTTGGCCA
 961 AACCTGACACTGTCTTGCTGCATTCTCCTTTGGCAAACATCAGGGTCAGAATTCAGGATAGCCCTTCCTAGGGCACTGGA
1041 CTTTCTGGCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTACCTGGAGAGTGTCCAGAGGCTGCTCTGAGGCTGAG
1121 GTGTGTTCCCCCTTGCCTGGTTCCAGCTGTCAGAGGGATACCATCCTAGGGTCTGGGAATCCAAGGCCACGAGACTCCTT
1201 GGTTTGTGGTCCGAGATCCTGTACTAAGGAGGGTCTGGCCAGAGGAACAGACCAGCTTTTGCACAATGAAGCGCAAGGGA
1281 ACAAGTGGTTTGCCTGGTGTCCTACCTGTCCTGAACCTGGTCCTGTGGGCCATTGAAAAGTTAGATCTGTGATCTCTGGG
1361 GTTTTTGTGGCTTTGTTCAATGCTTCCACTCTAGGGCAGGCAGAGCAGTCTATACTCTCCCAAGCCTGCTTGACCTCCAA
1441 GTAGAGCTGATACAGAGATCTGTGAATATTGTGATAGAAATTCTTTGGTATTCATACATTTCAGCTGCAAGTCAGCAATT
1521 TCCCAGGTACCATGTAAGCTATAAAACAGTCATTCTTAAAGACAGAGGATAGCTGTGACTCATGGGATCATGAGGTCCAT
1601 GGCTGGTTGCAGGTTCCCTTTTTCCTTCCTCAGGTTTTGTCTCTTCCTGTGTTGTCCCCAGCAAGGGAGAGACTGTGGGG
1681 TGGATTGGGAGAACAGATTAGGAGTATAGCAAATGAACCCAGAATGGAACAGTGGGGAGCTAACTGTGAATGAGGAGAGT
1761 ACCTGCTGCAGGACCTGGAGGTCAGGTGTGAATGCTGTATTGGCACAGGGAATAAATATCCTGGCGTCTGGAGCCTTCAC
1841 CTCTCCGTCAAGTCCTTCCTGTGATACTGCCATGGCACAGGATCTGAGTTGCAGCTCTGCACCCTAAATCACACCCTGGG
1921 CATTGTCTGGGCTGCAGGGCTGCCAGGTTCTGTACTTGTGTCCAGCTGTGGCCCTGGATGCTGGAGCTGGAGGGTTTTCT
2001 GTGCTCAGACTGTAGCCTGTAGCTCTTGGCCTGTGTAGAGCCCCCTCCTGTGCCCTCAGTGGCTGTCGTTTGTTAACATC
2081 ATCAGGAAGATGGGAAAGGTCAGGCAGAATTTTTCTGCCCTACAAAGGGTGGAAGAGAAAGGACACAGTATTTTCATGAA
2161 TTTACCATATATCTTTGTTTTTCTTCAACGAAAAAGTTAATTGAGGCAATGTCATCTGCTCAAAGTTGAGTGGTTTATTC
2241 ACAATAAACTGTAAGTTTCTGATTATAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aggcagACGAGUACACGAGUUUc 5'
                || |||| |||||||| 
Target 5' aggcaaTG-TCATCTGCTCAAAg 3'
 2204 - 2225 164.00 -16.20
2 
miRNA  3' aggCAGACGAGUACACGAGUUUc 5'
             ||:|  || ||||||||:| 
Target 5' aggGTTT--TC-TGTGCTCAGAc 3'
 1991 - 2010 147.00 -13.60
3 
miRNA  3' aggcagACGA-GUACA-----CGAGUuuc 5'
                |||| |||||     |||||   
Target 5' tggtggTGCTGCATGTCTGTGGCTCAcct 3'
 684 - 712 121.00 -13.12
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26966758 16 COSMIC
COSN26441145 53 COSMIC
COSN23203027 120 COSMIC
COSN31525756 133 COSMIC
COSN30164591 160 COSMIC
COSN31599329 202 COSMIC
COSN31481700 214 COSMIC
COSN31577658 237 COSMIC
COSN31491283 294 COSMIC
COSN31553772 317 COSMIC
COSN24324021 337 COSMIC
COSN8489327 337 COSMIC
COSN20098458 351 COSMIC
COSN28696904 1071 COSMIC
COSN31535809 1092 COSMIC
COSN5148990 1227 COSMIC
COSN22336205 2024 COSMIC
COSN6769403 2149 COSMIC
COSN22322092 2229 COSMIC
COSN21097835 2460 COSMIC
COSN21000294 3108 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs757407582 5 dbSNP
rs779106412 10 dbSNP
rs1210670470 12 dbSNP
rs1190920959 14 dbSNP
rs1248241904 18 dbSNP
rs760262933 20 dbSNP
rs768401421 21 dbSNP
rs201946896 25 dbSNP
rs776112711 32 dbSNP
rs750672888 34 dbSNP
rs763440987 41 dbSNP
rs766636720 43 dbSNP
rs752073580 50 dbSNP
rs1281696247 52 dbSNP
rs759968844 52 dbSNP
rs538713967 53 dbSNP
rs1350498801 54 dbSNP
rs1300470104 55 dbSNP
rs1433476524 58 dbSNP
rs1364928920 68 dbSNP
rs1324551448 76 dbSNP
rs1388877227 81 dbSNP
rs1388217131 89 dbSNP
rs934127005 93 dbSNP
rs1235552363 101 dbSNP
rs1292550523 109 dbSNP
rs1429890797 113 dbSNP
rs1049830541 114 dbSNP
rs1166679330 128 dbSNP
rs1448727094 133 dbSNP
rs1485195709 139 dbSNP
rs190920879 151 dbSNP
rs952720413 152 dbSNP
rs1265591235 163 dbSNP
rs1209411102 170 dbSNP
rs1483440905 176 dbSNP
rs1276779325 178 dbSNP
rs183107342 185 dbSNP
rs1261788675 190 dbSNP
rs1342145136 191 dbSNP
rs990812116 199 dbSNP
rs1235943284 214 dbSNP
rs1329690252 224 dbSNP
rs1322501602 227 dbSNP
rs753289283 229 dbSNP
rs1371878935 231 dbSNP
rs1305582020 246 dbSNP
rs573328496 248 dbSNP
rs1191351528 262 dbSNP
rs1396567094 263 dbSNP
rs1454505511 264 dbSNP
rs1157827942 265 dbSNP
rs1038644098 278 dbSNP
rs897369133 281 dbSNP
rs970975814 303 dbSNP
rs1378364294 309 dbSNP
rs1455305552 320 dbSNP
rs1376812053 326 dbSNP
rs1289428710 329 dbSNP
rs1473007464 330 dbSNP
rs1254227609 333 dbSNP
rs1203192070 335 dbSNP
rs1437285497 335 dbSNP
rs1280013192 336 dbSNP
rs1288869407 337 dbSNP
rs201739872 337 dbSNP
rs397814933 337 dbSNP
rs60243443 337 dbSNP
rs777139214 337 dbSNP
rs1385725513 338 dbSNP
rs1408737909 345 dbSNP
rs1340492087 347 dbSNP
rs1336121898 351 dbSNP
rs1386354207 351 dbSNP
rs77825223 351 dbSNP
rs200054166 352 dbSNP
rs1373488669 353 dbSNP
rs982757364 354 dbSNP
rs924145701 355 dbSNP
rs1458611928 360 dbSNP
rs1235396380 364 dbSNP
rs1309014175 369 dbSNP
rs1180263457 370 dbSNP
rs935473784 375 dbSNP
rs186178542 378 dbSNP
rs1190231324 379 dbSNP
rs1261893251 389 dbSNP
rs1047427993 406 dbSNP
rs111674320 409 dbSNP
rs1263051398 411 dbSNP
rs1211292461 412 dbSNP
rs1331635293 414 dbSNP
rs1265876608 418 dbSNP
rs931712648 421 dbSNP
rs576312980 427 dbSNP
rs1285388667 432 dbSNP
rs377472929 438 dbSNP
rs1445154440 440 dbSNP
rs1339870507 451 dbSNP
rs1321106451 457 dbSNP
rs563126491 458 dbSNP
rs190642621 463 dbSNP
rs564679823 471 dbSNP
rs1033370398 473 dbSNP
rs879048496 479 dbSNP
rs944669711 485 dbSNP
rs1414650613 492 dbSNP
rs576880680 495 dbSNP
rs1036661730 501 dbSNP
rs147069603 511 dbSNP
rs1189717356 525 dbSNP
rs959216629 535 dbSNP
rs1246497924 541 dbSNP
rs757430401 541 dbSNP
rs1214649158 544 dbSNP
rs183407762 550 dbSNP
rs966691285 553 dbSNP
rs1367880174 558 dbSNP
rs1460934692 565 dbSNP
rs1358080477 567 dbSNP
rs898143088 587 dbSNP
rs1230470416 588 dbSNP
rs1362776071 598 dbSNP
rs1027037396 601 dbSNP
rs1436921937 610 dbSNP
rs978407987 616 dbSNP
rs1162885461 617 dbSNP
rs745922546 619 dbSNP
rs888568711 626 dbSNP
rs542381210 627 dbSNP
rs529941554 631 dbSNP
rs1441886648 636 dbSNP
rs1330978489 637 dbSNP
rs955539447 638 dbSNP
rs1388841511 641 dbSNP
rs1186369635 649 dbSNP
rs1012265628 656 dbSNP
rs548387374 658 dbSNP
rs563612081 659 dbSNP
rs985562209 668 dbSNP
rs1274646444 669 dbSNP
rs982402254 671 dbSNP
rs138408836 674 dbSNP
rs941515729 675 dbSNP
rs188463049 677 dbSNP
rs1369398907 679 dbSNP
rs1276860183 685 dbSNP
rs918745123 686 dbSNP
rs192537754 690 dbSNP
rs1403259038 691 dbSNP
rs990088794 697 dbSNP
rs560480170 699 dbSNP
rs1431700876 702 dbSNP
rs1046392045 709 dbSNP
rs906220986 711 dbSNP
rs1434141274 720 dbSNP
rs1427653579 726 dbSNP
rs1189105077 731 dbSNP
rs1197591907 736 dbSNP
rs78051921 738 dbSNP
rs1252078391 749 dbSNP
rs1249331244 752 dbSNP
rs747152959 756 dbSNP
rs1481769979 766 dbSNP
rs374667553 771 dbSNP
rs1177584214 773 dbSNP
rs1255306959 778 dbSNP
rs565242342 779 dbSNP
rs1210676315 783 dbSNP
rs539141061 784 dbSNP
rs985866202 790 dbSNP
rs547548043 794 dbSNP
rs1054811268 795 dbSNP
rs1190039874 796 dbSNP
rs894860129 804 dbSNP
rs1420072119 805 dbSNP
rs1345186056 806 dbSNP
rs1289184008 807 dbSNP
rs1411798840 809 dbSNP
rs1462093721 823 dbSNP
rs1010608895 828 dbSNP
rs911574035 830 dbSNP
rs1194512509 840 dbSNP
rs1466945665 863 dbSNP
rs1361275257 869 dbSNP
rs1022164133 878 dbSNP
rs1174474537 879 dbSNP
rs771217189 883 dbSNP
rs1169991728 884 dbSNP
rs1352987879 888 dbSNP
rs1469610613 903 dbSNP
rs1463789271 905 dbSNP
rs1299127319 906 dbSNP
rs1379023260 908 dbSNP
rs1413452980 909 dbSNP
rs1182387334 914 dbSNP
rs1295701100 931 dbSNP
rs1484226622 934 dbSNP
rs149155109 935 dbSNP
rs1202839602 936 dbSNP
rs1329577081 937 dbSNP
rs1217544819 945 dbSNP
rs769635163 954 dbSNP
rs1230421567 970 dbSNP
rs747075371 970 dbSNP
rs1315203720 974 dbSNP
rs1306312126 979 dbSNP
rs750101446 1024 dbSNP
rs1335283512 1038 dbSNP
rs1452434684 1042 dbSNP
rs1036285856 1043 dbSNP
rs897704489 1045 dbSNP
rs182889779 1048 dbSNP
rs955373037 1052 dbSNP
rs985422895 1056 dbSNP
rs1362845267 1060 dbSNP
rs1255172157 1062 dbSNP
rs1018372547 1065 dbSNP
rs1484589643 1066 dbSNP
rs370994924 1069 dbSNP
rs962824840 1070 dbSNP
rs143241623 1071 dbSNP
rs918790906 1073 dbSNP
rs1249592569 1079 dbSNP
rs1023650731 1090 dbSNP
rs906535531 1094 dbSNP
rs1003919671 1095 dbSNP
rs565045509 1096 dbSNP
rs1186003092 1100 dbSNP
rs576331251 1116 dbSNP
rs1313586945 1126 dbSNP
rs1245794884 1128 dbSNP
rs930116926 1130 dbSNP
rs1030993130 1131 dbSNP
rs148286047 1138 dbSNP
rs981734927 1140 dbSNP
rs1380879498 1147 dbSNP
rs558538556 1149 dbSNP
rs1430541858 1153 dbSNP
rs1171457968 1161 dbSNP
rs1375191631 1163 dbSNP
rs989712598 1164 dbSNP
rs1433327134 1167 dbSNP
rs1022501647 1169 dbSNP
rs1162858818 1176 dbSNP
rs749072343 1191 dbSNP
rs576734994 1196 dbSNP
rs1391935704 1198 dbSNP
rs1190844461 1208 dbSNP
rs928851948 1213 dbSNP
rs1376608233 1216 dbSNP
rs1210614157 1224 dbSNP
rs939024283 1227 dbSNP
rs1289606575 1247 dbSNP
rs1221820400 1249 dbSNP
rs1343578701 1251 dbSNP
rs1054758318 1264 dbSNP
rs540998518 1267 dbSNP
rs1225757584 1273 dbSNP
rs911593891 1274 dbSNP
rs1301580646 1276 dbSNP
rs1388083994 1279 dbSNP
rs894807689 1286 dbSNP
rs770659530 1288 dbSNP
rs1429824024 1298 dbSNP
rs1214762601 1299 dbSNP
rs1043850483 1302 dbSNP
rs1300244708 1304 dbSNP
rs559215779 1305 dbSNP
rs1474975603 1311 dbSNP
rs1377953402 1325 dbSNP
rs1236237431 1326 dbSNP
rs902365999 1334 dbSNP
rs965751174 1336 dbSNP
rs972176226 1339 dbSNP
rs1198836829 1341 dbSNP
rs1483409827 1345 dbSNP
rs1277421715 1356 dbSNP
rs1194543049 1357 dbSNP
rs918909622 1372 dbSNP
rs544619880 1381 dbSNP
rs999739770 1383 dbSNP
rs1235868003 1387 dbSNP
rs186662830 1388 dbSNP
rs1048936155 1392 dbSNP
rs1029586327 1393 dbSNP
rs1240410514 1395 dbSNP
rs542089417 1396 dbSNP
rs1409236516 1400 dbSNP
rs948516783 1413 dbSNP
rs1045134356 1418 dbSNP
rs906644016 1430 dbSNP
rs1427518348 1431 dbSNP
rs1175911971 1432 dbSNP
rs1003627662 1435 dbSNP
rs1052888750 1436 dbSNP
rs1437819244 1439 dbSNP
rs774196630 1441 dbSNP
rs1206015333 1451 dbSNP
rs1321830420 1452 dbSNP
rs1262148033 1454 dbSNP
rs1396170421 1455 dbSNP
rs1228584455 1461 dbSNP
rs1018319987 1466 dbSNP
rs1408676787 1467 dbSNP
rs1277320331 1469 dbSNP
rs1440827608 1470 dbSNP
rs1404217995 1484 dbSNP
rs1011177546 1489 dbSNP
rs1336064512 1494 dbSNP
rs1450207627 1501 dbSNP
rs1405031059 1510 dbSNP
rs1175982528 1517 dbSNP
rs962689826 1531 dbSNP
rs953531047 1533 dbSNP
rs373978389 1534 dbSNP
rs1469665510 1540 dbSNP
rs1369599545 1542 dbSNP
rs1026125543 1559 dbSNP
rs563429859 1564 dbSNP
rs1460287202 1578 dbSNP
rs966227913 1580 dbSNP
rs1430899173 1581 dbSNP
rs1208985324 1582 dbSNP
rs1324733054 1583 dbSNP
rs1281655655 1588 dbSNP
rs1222754105 1589 dbSNP
rs951590928 1593 dbSNP
rs759087578 1596 dbSNP
rs147567979 1597 dbSNP
rs1243592685 1598 dbSNP
rs774875186 1600 dbSNP
rs1321045479 1601 dbSNP
rs532469142 1611 dbSNP
rs991688954 1614 dbSNP
rs1316466962 1616 dbSNP
rs1400217845 1617 dbSNP
rs948631041 1619 dbSNP
rs1166027229 1635 dbSNP
rs530838153 1645 dbSNP
rs1286342697 1647 dbSNP
rs946353449 1649 dbSNP
rs1216611924 1650 dbSNP
rs774206364 1655 dbSNP
rs939461440 1660 dbSNP
rs1451678609 1671 dbSNP
rs1467335360 1674 dbSNP
rs1195836223 1677 dbSNP
rs1043498943 1678 dbSNP
rs764539496 1686 dbSNP
rs1358725435 1694 dbSNP
rs1470005656 1714 dbSNP
rs368795071 1714 dbSNP
rs1298204088 1715 dbSNP
rs1216161422 1719 dbSNP
rs1359547499 1721 dbSNP
rs1268672559 1724 dbSNP
rs1430200238 1759 dbSNP
rs754180589 1764 dbSNP
rs1157324277 1770 dbSNP
rs935178747 1772 dbSNP
rs1305101065 1774 dbSNP
rs1051406454 1776 dbSNP
rs1422782250 1786 dbSNP
rs1365557357 1796 dbSNP
rs1169726085 1804 dbSNP
rs1412026643 1810 dbSNP
rs892481375 1811 dbSNP
rs1185586489 1818 dbSNP
rs377607526 1820 dbSNP
rs565305427 1822 dbSNP
rs1044010683 1826 dbSNP
rs889407456 1827 dbSNP
rs1163616351 1830 dbSNP
rs1391763070 1844 dbSNP
rs561019386 1847 dbSNP
rs1305559540 1849 dbSNP
rs898516110 1852 dbSNP
rs761751123 1853 dbSNP
rs192591231 1854 dbSNP
rs547755355 1873 dbSNP
rs1025735145 1896 dbSNP
rs993670064 1901 dbSNP
rs1403201945 1903 dbSNP
rs765407766 1917 dbSNP
rs1344916810 1918 dbSNP
rs1299245619 1920 dbSNP
rs1444918517 1935 dbSNP
rs1353255591 1940 dbSNP
rs1170270149 1943 dbSNP
rs1351145587 1948 dbSNP
rs951586478 1949 dbSNP
rs951721341 1953 dbSNP
rs530046945 1959 dbSNP
rs1173754720 1966 dbSNP
rs1281158923 1968 dbSNP
rs1022583857 1976 dbSNP
rs969971142 1997 dbSNP
rs1035849798 2002 dbSNP
rs1479652823 2006 dbSNP
rs981369576 2011 dbSNP
rs1210632016 2013 dbSNP
rs1325352321 2020 dbSNP
rs370992309 2032 dbSNP
rs1332833936 2033 dbSNP
rs1221874638 2034 dbSNP
rs991721466 2036 dbSNP
rs185018084 2042 dbSNP
rs1322947294 2043 dbSNP
rs1307859110 2045 dbSNP
rs1225510847 2046 dbSNP
rs1215782179 2047 dbSNP
rs373546975 2049 dbSNP
rs750708552 2053 dbSNP
rs766962923 2056 dbSNP
rs1408671516 2067 dbSNP
rs979466307 2068 dbSNP
rs1412219407 2069 dbSNP
rs1468918987 2069 dbSNP
rs376756044 2075 dbSNP
rs913954868 2075 dbSNP
rs1416782299 2078 dbSNP
rs923626234 2079 dbSNP
rs935107958 2082 dbSNP
rs1235060084 2085 dbSNP
rs1050817517 2089 dbSNP
rs1240988587 2095 dbSNP
rs536344482 2118 dbSNP
rs187829822 2124 dbSNP
rs1202773770 2125 dbSNP
rs946777679 2131 dbSNP
rs1225019851 2133 dbSNP
rs1043789099 2138 dbSNP
rs758457205 2144 dbSNP
rs889105002 2145 dbSNP
rs1187927122 2146 dbSNP
rs1414977747 2149 dbSNP
rs1247297289 2154 dbSNP
rs1385462870 2155 dbSNP
rs780126931 2163 dbSNP
rs548382721 2166 dbSNP
rs1040603761 2169 dbSNP
rs902009931 2170 dbSNP
rs1385300451 2174 dbSNP
rs1290213988 2179 dbSNP
rs1451005020 2186 dbSNP
rs993646148 2189 dbSNP
rs1026889600 2190 dbSNP
rs1005908508 2191 dbSNP
rs942486180 2191 dbSNP
rs1022614701 2198 dbSNP
rs1262711376 2200 dbSNP
rs377208114 2210 dbSNP
rs1484951154 2228 dbSNP
rs981784591 2233 dbSNP
rs1223287237 2234 dbSNP
rs1414071794 2243 dbSNP
rs558254822 2250 dbSNP
rs1353626367 2252 dbSNP
rs898381882 2255 dbSNP
rs1245723233 2256 dbSNP
rs995434693 2262 dbSNP
rs1047540677 2266 dbSNP
rs1339015666 2270 dbSNP
rs1360813129 2272 dbSNP
rs1303275770 2278 dbSNP
rs887103440 2281 dbSNP
rs1003394674 2286 dbSNP
rs946810307 2312 dbSNP
rs192314494 2322 dbSNP
rs185145071 2327 dbSNP
rs756042147 2331 dbSNP
rs1195627152 2334 dbSNP
rs141599495 2343 dbSNP
rs535905582 2349 dbSNP
rs1262701915 2350 dbSNP
rs1021836786 2352 dbSNP
rs1200308148 2352 dbSNP
rs969413841 2357 dbSNP
rs902125577 2360 dbSNP
rs1222351320 2373 dbSNP
rs1340532053 2376 dbSNP
rs1253503177 2378 dbSNP
rs1225664030 2384 dbSNP
rs547887306 2403 dbSNP
rs1475871214 2405 dbSNP
rs1031112609 2411 dbSNP
rs571107702 2412 dbSNP
rs370133060 2413 dbSNP
rs534359394 2414 dbSNP
rs1391845894 2421 dbSNP
rs1398514078 2422 dbSNP
rs749070749 2424 dbSNP
rs1461288749 2432 dbSNP
rs552926718 2433 dbSNP
rs1177343109 2435 dbSNP
rs1419929030 2435 dbSNP
rs1266804764 2437 dbSNP
rs1433929114 2437 dbSNP
rs770890499 2439 dbSNP
rs1377200739 2441 dbSNP
rs1253283648 2442 dbSNP
rs1194497772 2448 dbSNP
rs1480477883 2451 dbSNP
rs912284944 2452 dbSNP
rs1416656583 2463 dbSNP
rs1022647138 2464 dbSNP
rs942518697 2483 dbSNP
rs1224925336 2493 dbSNP
rs189846100 2499 dbSNP
rs760139990 2500 dbSNP
rs1282141276 2505 dbSNP
rs1334948777 2507 dbSNP
rs905539923 2508 dbSNP
rs1337533076 2513 dbSNP
rs919762228 2514 dbSNP
rs1390616892 2515 dbSNP
rs1002510809 2516 dbSNP
rs1035757800 2517 dbSNP
rs1471108391 2532 dbSNP
rs1427425626 2534 dbSNP
rs1225473432 2535 dbSNP
rs778705435 2537 dbSNP
rs1172134683 2538 dbSNP
rs1046958553 2539 dbSNP
rs956023863 2540 dbSNP
rs1272212031 2546 dbSNP
rs766029188 2550 dbSNP
rs1180201866 2555 dbSNP
rs181120941 2556 dbSNP
rs938656882 2563 dbSNP
rs1205943659 2564 dbSNP
rs753495345 2566 dbSNP
rs1459732262 2568 dbSNP
rs968513999 2571 dbSNP
rs1277469346 2572 dbSNP
rs541909182 2576 dbSNP
rs965147659 2580 dbSNP
rs1238186087 2587 dbSNP
rs1445081551 2587 dbSNP
rs894526523 2589 dbSNP
rs1316952840 2591 dbSNP
rs1450180504 2592 dbSNP
rs976147397 2593 dbSNP
rs1012949474 2594 dbSNP
rs58253175 2602 dbSNP
rs929603153 2608 dbSNP
rs1021779476 2609 dbSNP
rs771853488 2612 dbSNP
rs1439672175 2614 dbSNP
rs1386369166 2615 dbSNP
rs904674613 2617 dbSNP
rs999535040 2624 dbSNP
rs1236544301 2628 dbSNP
rs1193366751 2632 dbSNP
rs1448250713 2635 dbSNP
rs557212165 2637 dbSNP
rs1215225246 2641 dbSNP
rs775023870 2646 dbSNP
rs1242349384 2651 dbSNP
rs986430677 2652 dbSNP
rs903386377 2660 dbSNP
rs150902899 2675 dbSNP
rs184530401 2676 dbSNP
rs1396754807 2677 dbSNP
rs1381688145 2680 dbSNP
rs963822492 2688 dbSNP
rs1283855871 2694 dbSNP
rs1435235547 2697 dbSNP
rs1328403779 2703 dbSNP
rs1316360818 2709 dbSNP
rs138443010 2710 dbSNP
rs1003035173 2722 dbSNP
rs919779536 2728 dbSNP
rs1423130370 2732 dbSNP
rs931137804 2733 dbSNP
rs528379843 2739 dbSNP
rs1413469588 2741 dbSNP
rs1187451779 2743 dbSNP
rs1476215172 2746 dbSNP
rs1240001325 2760 dbSNP
rs983120529 2770 dbSNP
rs1056825362 2774 dbSNP
rs760125739 2779 dbSNP
rs1010169981 2784 dbSNP
rs1220110485 2785 dbSNP
rs1273509001 2788 dbSNP
rs1301734097 2788 dbSNP
rs377470118 2788 dbSNP
rs908423282 2789 dbSNP
rs938689435 2793 dbSNP
rs79282046 2795 dbSNP
rs769184149 2797 dbSNP
rs1399488797 2809 dbSNP
rs777041779 2810 dbSNP
rs559281709 2813 dbSNP
rs762156689 2819 dbSNP
rs566106540 2826 dbSNP
rs765704730 2829 dbSNP
rs1411991218 2834 dbSNP
rs1416966932 2839 dbSNP
rs1248213862 2850 dbSNP
rs976560219 2856 dbSNP
rs904706007 2870 dbSNP
rs1430731244 2872 dbSNP
rs533561496 2877 dbSNP
rs1488139683 2883 dbSNP
rs760958991 2887 dbSNP
rs750796708 2892 dbSNP
rs909435995 2898 dbSNP
rs142936414 2901 dbSNP
rs146114064 2903 dbSNP
rs1218202316 2906 dbSNP
rs1324394112 2907 dbSNP
rs1285323538 2909 dbSNP
rs188271239 2919 dbSNP
rs1009149667 2920 dbSNP
rs1433624788 2930 dbSNP
rs1398505950 2932 dbSNP
rs1330292833 2935 dbSNP
rs1470039528 2937 dbSNP
rs139874519 2938 dbSNP
rs1173717322 2941 dbSNP
rs963689256 2943 dbSNP
rs1362008028 2945 dbSNP
rs938476062 2951 dbSNP
rs552726328 2958 dbSNP
rs763096838 2959 dbSNP
rs1389592774 2969 dbSNP
rs1026707138 2973 dbSNP
rs891460612 2979 dbSNP
rs1208132718 2982 dbSNP
rs1311610244 2988 dbSNP
rs1308376827 2989 dbSNP
rs1373644514 2990 dbSNP
rs571100851 2996 dbSNP
rs952663630 2998 dbSNP
rs1387768896 2999 dbSNP
rs1306828505 3010 dbSNP
rs982599904 3018 dbSNP
rs535273051 3032 dbSNP
rs1465108409 3036 dbSNP
rs1345220645 3044 dbSNP
rs552706549 3046 dbSNP
rs1240498211 3047 dbSNP
rs1398927470 3052 dbSNP
rs180788905 3053 dbSNP
rs1184037368 3061 dbSNP
rs1042735024 3063 dbSNP
rs904478885 3069 dbSNP
rs959979161 3069 dbSNP
rs751613580 3072 dbSNP
rs535568194 3078 dbSNP
rs1482981200 3082 dbSNP
rs1261439120 3083 dbSNP
rs1218000184 3084 dbSNP
rs1006792589 3087 dbSNP
rs868627902 3089 dbSNP
rs186432999 3090 dbSNP
rs900972693 3091 dbSNP
rs915933989 3095 dbSNP
rs374262712 3098 dbSNP
rs948697721 3106 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agGCAGACGAGUACACGAGUUUc 5'
            :| || | ||    |||||| 
Target 5' gcUGCCUACCCAC---CUCAAAa 3'
 		7 - 26
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000356401.4 | 3UTR | ACAUAUGCUGCCUACCCACCUCAAAAUGUCUGUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
192 hsa-miR-8055 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT104178 PHTF2 putative homeodomain transcription factor 2 2 6
MIRT109489 KLHL15 kelch like family member 15 2 2
MIRT138601 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT207609 COX5B cytochrome c oxidase subunit 5B 2 2
MIRT246311 HIST2H2AA3 histone cluster 2 H2A family member a3 2 4
MIRT246323 HIST2H2AA4 histone cluster 2 H2A family member a4 2 4
MIRT267508 FEN1 flap structure-specific endonuclease 1 2 2
MIRT271002 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT378038 SMAD5 SMAD family member 5 2 4
MIRT442382 CLVS2 clavesin 2 2 2
MIRT443996 METRN meteorin, glial cell differentiation regulator 2 4
MIRT444222 TMEM136 transmembrane protein 136 2 2
MIRT445870 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT463214 ZNF131 zinc finger protein 131 2 2
MIRT464523 UBXN2B UBX domain protein 2B 2 2
MIRT471509 PCGF3 polycomb group ring finger 3 2 6
MIRT474035 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT481566 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 2 2
MIRT485415 LZIC leucine zipper and CTNNBIP1 domain containing 2 8
MIRT485724 CALM2 calmodulin 2 2 2
MIRT500745 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT502790 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT503164 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT504842 HAUS3 HAUS augmin like complex subunit 3 2 6
MIRT506559 MNX1 motor neuron and pancreas homeobox 1 2 4
MIRT511372 IKZF3 IKAROS family zinc finger 3 2 6
MIRT522117 NUDT3 nudix hydrolase 3 2 4
MIRT523755 FBXO27 F-box protein 27 2 4
MIRT525160 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT537294 FZD5 frizzled class receptor 5 2 2
MIRT537493 FAM168B family with sequence similarity 168 member B 2 2
MIRT538375 CRIM1 cysteine rich transmembrane BMP regulator 1 2 2
MIRT539394 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT544124 PPIL1 peptidylprolyl isomerase like 1 2 2
MIRT547269 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT548034 GOLIM4 golgi integral membrane protein 4 2 2
MIRT551641 CCDC127 coiled-coil domain containing 127 2 2
MIRT552585 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT552605 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554174 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT556914 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT564288 MED26 mediator complex subunit 26 2 2
MIRT571375 TTPAL alpha tocopherol transfer protein like 2 4
MIRT572009 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT572339 CKAP2L cytoskeleton associated protein 2 like 2 4
MIRT572612 CNTLN centlein 2 2
MIRT572779 ZNF277 zinc finger protein 277 2 2
MIRT573258 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573353 PDE3A phosphodiesterase 3A 2 4
MIRT573362 MAP2K6 mitogen-activated protein kinase kinase 6 2 2
MIRT574194 LMNB1 lamin B1 2 2
MIRT574453 RPS16 ribosomal protein S16 2 2
MIRT574849 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT575356 Zxda zinc finger, X-linked, duplicated A 2 3
MIRT612192 CCDC77 coiled-coil domain containing 77 2 2
MIRT612974 GGCX gamma-glutamyl carboxylase 2 2
MIRT613749 UNKL unkempt family like zinc finger 2 2
MIRT614085 PDE4C phosphodiesterase 4C 2 2
MIRT614405 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT614441 WDR92 WD repeat domain 92 2 2
MIRT614518 SUB1 SUB1 homolog, transcriptional regulator 2 2
MIRT614653 NIPAL3 NIPA like domain containing 3 2 2
MIRT614720 TEAD3 TEA domain transcription factor 3 2 2
MIRT615556 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT616636 LRAT lecithin retinol acyltransferase 2 4
MIRT617210 CERS4 ceramide synthase 4 2 2
MIRT618934 SF3A3 splicing factor 3a subunit 3 2 2
MIRT619995 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT620819 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT621254 PDZD2 PDZ domain containing 2 2 2
MIRT622307 SETD5 SET domain containing 5 2 2
MIRT623324 MAN1C1 mannosidase alpha class 1C member 1 2 2
MIRT625066 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 2
MIRT625443 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT626182 SRFBP1 serum response factor binding protein 1 2 2
MIRT626701 TRIM65 tripartite motif containing 65 2 2
MIRT628925 TBRG4 transforming growth factor beta regulator 4 2 2
MIRT630883 SLC25A33 solute carrier family 25 member 33 2 2
MIRT631653 BRI3BP BRI3 binding protein 2 2
MIRT631696 C1QTNF6 C1q and TNF related 6 2 2
MIRT632864 GSPT1 G1 to S phase transition 1 2 2
MIRT635185 NFKBID NFKB inhibitor delta 2 2
MIRT636917 ZNF845 zinc finger protein 845 2 2
MIRT637048 RAB27A RAB27A, member RAS oncogene family 2 2
MIRT637599 ZNF554 zinc finger protein 554 2 2
MIRT638204 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT638839 CPE carboxypeptidase E 2 2
MIRT639005 ACO1 aconitase 1 2 2
MIRT640894 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT641402 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT642083 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643179 HYPK huntingtin interacting protein K 2 2
MIRT644205 CBS cystathionine-beta-synthase 2 2
MIRT645453 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT645797 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT645960 TTF2 transcription termination factor 2 2 2
MIRT646334 CLIC6 chloride intracellular channel 6 2 2
MIRT646484 APBB3 amyloid beta precursor protein binding family B member 3 2 2
MIRT646611 SMOC2 SPARC related modular calcium binding 2 2 2
MIRT649392 SH2D4A SH2 domain containing 4A 2 2
MIRT650540 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT650679 CD82 CD82 molecule 2 2
MIRT652118 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652588 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654807 PPT1 palmitoyl-protein thioesterase 1 2 2
MIRT655318 PCYOX1 prenylcysteine oxidase 1 2 2
MIRT655411 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT659671 CD86 CD86 molecule 2 2
MIRT660190 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660883 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT661695 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT661765 BIVM basic, immunoglobulin-like variable motif containing 2 2
MIRT662787 TBC1D25 TBC1 domain family member 25 2 2
MIRT663733 ZNF285 zinc finger protein 285 2 2
MIRT663787 DDX53 DEAD-box helicase 53 2 2
MIRT664663 IMPA2 inositol monophosphatase 2 2 2
MIRT665702 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT667444 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667946 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT668776 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT669824 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670398 ZXDA zinc finger, X-linked, duplicated A 2 3
MIRT670402 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671112 ZNF573 zinc finger protein 573 2 2
MIRT671129 CD226 CD226 molecule 2 2
MIRT671145 ANKRD9 ankyrin repeat domain 9 2 2
MIRT671315 ACTR1A ARP1 actin related protein 1 homolog A 2 2
MIRT671329 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671857 ZNF429 zinc finger protein 429 2 2
MIRT672009 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672054 KIAA0930 KIAA0930 2 2
MIRT672466 RTTN rotatin 2 2
MIRT672642 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672660 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT672755 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672839 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT672917 LRRC2 leucine rich repeat containing 2 2 2
MIRT672983 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT673051 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT673078 AK1 adenylate kinase 1 2 2
MIRT673143 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673303 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673319 THAP1 THAP domain containing 1 2 2
MIRT673339 SLC35F6 solute carrier family 35 member F6 2 2
MIRT673554 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673656 ZNF440 zinc finger protein 440 2 2
MIRT673693 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT673720 EMCN endomucin 2 2
MIRT673840 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT673869 KLF2 Kruppel like factor 2 2 2
MIRT673888 DCTN6 dynactin subunit 6 2 2
MIRT674180 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT674579 SLC35B4 solute carrier family 35 member B4 2 2
MIRT674604 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674737 SLC16A1 solute carrier family 16 member 1 2 2
MIRT674824 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT674993 STRN3 striatin 3 2 2
MIRT675058 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT675072 CCR6 C-C motif chemokine receptor 6 2 2
MIRT675116 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT675158 YARS2 tyrosyl-tRNA synthetase 2 2 2
MIRT675254 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT675434 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT675687 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675772 YIPF4 Yip1 domain family member 4 2 2
MIRT675883 SNAP29 synaptosome associated protein 29 2 2
MIRT677923 SLC35E1 solute carrier family 35 member E1 2 2
MIRT678991 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT679010 MTMR10 myotubularin related protein 10 2 2
MIRT679024 ZNF419 zinc finger protein 419 2 2
MIRT679392 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT679407 GMCL1 germ cell-less, spermatogenesis associated 1 2 2
MIRT683745 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT689266 ZNF99 zinc finger protein 99 2 2
MIRT690502 MDM2 MDM2 proto-oncogene 2 2
MIRT700939 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT702073 PCDHB11 protocadherin beta 11 2 2
MIRT705020 CALU calumenin 2 2
MIRT706196 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT706253 MKLN1 muskelin 1 2 2
MIRT706540 GJD2 gap junction protein delta 2 2 2
MIRT707358 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT707407 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710638 GLUL glutamate-ammonia ligase 2 2
MIRT714213 C10orf71 chromosome 10 open reading frame 71 2 2
MIRT715646 USP6NL USP6 N-terminal like 2 2
MIRT717751 KCNRG potassium channel regulator 2 2
MIRT720793 GCH1 GTP cyclohydrolase 1 2 2
MIRT722254 POLQ DNA polymerase theta 2 2
MIRT723765 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT724965 TNS1 tensin 1 2 2
MIRT736568 TP53INP1 tumor protein p53 inducible nuclear protein 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-8055 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)

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