pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol APH1A   
Synonyms 6530402N02Rik, APH-1, APH-1A, CGI-78
Description aph-1 homolog A, gamma-secretase subunit
Transcript NM_016022   
Other Transcripts NM_001077628   
Expression
Putative miRNA Targets on APH1A
3'UTR of APH1A
(miRNA target sites are highlighted)
>APH1A|NM_016022|3'UTR
   1 CTACCTGGACTGATCGCCTGACAGATCCCACCTGCCTGTCCACTGCCCATGACTGAGCCCAGCCCCAGCCCGGGTCCATT
  81 GCCCACATTCTCTGTCTCCTTCTCGTCGGTCTACCCCACTACCTCCAGGGTTTTGCTTTGTCCTTTTGTGACCGTTAGTC
 161 TCTAAGCTTTACCAGGAGCAGCCTGGGTTCAGCCAGTCAGTGACTGGTGGGTTTGAATCTGCACTTATCCCCACCACCTG
 241 GGGACCCCCTTGTTGTGTCCAGGACTCCCCCTGTGTCAGTGCTCTGCTCTCACCCTGCCCAAGACTCACCTCCCTTCCCC
 321 TCTGCAGGCCGACGGCAGGAGGACAGTCGGGTGATGGTGTATTCTGCCCTGCGCATCCCACCCGAGGACTGAGGGAACCT
 401 AGGGGGGACCCCTGGGCCTGGGGTGCCCTCCTGATGTCCTCGCCCTGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGG
 481 TTGCCAAGAAAAGGGACCTAGTTTAGCCATTGCCCTGGAGATGAAATTAATGGAGGCTCAAGGATAGATGAGCTCTGAGT
 561 TTCTCAGTACTCCCTCAAGACTGGACATCTTGGTCTTTTTCTCAGGCCTGAGGGGGAACCATTTTTGGTGTGATAAATAC
 641 CCTAAACTGCCTTTTTTTCTTTTTTGAGGTGGGGGGAGGGAGGAGGTATATTGGAACTCTTCTAACCTCCTTGGGCTATA
 721 TTTTCTCTCCTCGAGTTGCTCCTCATGGCTGGGCTCATTTCGGTCCCTTTCTCCTTGGTCCCAGACCTTGGGGGAAAGGA
 801 AGGAAGTGCATGTTTGGGAACTGGCATTACTGGAACTAATGGTTTTAACCTCCTTAACCACCAGCATCCCTCCTCTCCCC
 881 AAGGTGAAGTGGAGGGTGCTGTGGTGAGCTGGCCACTCCAGAGCTGCAGTGCCACTGGAGGAGTCAGACTACCATGACAT
 961 CGTAGGGAAGGAGGGGAGATTTTTTTGTAGTTTTTAATTGGGGTGTGGGAGGGGCGGGGAGGTTTTCTATAAACTGTATC
1041 ATTTTCTGCTGAGGGTGGAGTGTCCCATCCTTTTAATCAAGGTGATTGTGATTTTGACTAATAAAAAAGAATTTGTAATT
1121 GTGAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggccAGGCAUGUUUGAGACGUc 5'
              ||| | |   ||||||| 
Target 5' caccTCCCTTC-CCCTCTGCAg 3'
307 - 327 145.00 -15.62
2
miRNA  3' ggccaGGCAU-GUU-UGAGACGuc 5'
               |:||: ||: :||||||  
Target 5' tccccCTGTGTCAGTGCTCTGCtc 3'
266 - 289 133.00 -15.30
3
miRNA  3' ggCCAGGCA-----UGUUUGAGACGuc 5'
            ||||| |     |||  |||||:  
Target 5' cgGGTCCATTGCCCACATTCTCTGTct 3'
71 - 97 124.00 -15.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1405695 8 COSMIC
COSN30154379 12 COSMIC
COSN26601081 15 COSMIC
COSN31534254 18 COSMIC
COSN23013892 30 COSMIC
COSN30148195 51 COSMIC
COSN31494165 55 COSMIC
COSN28875044 67 COSMIC
COSN30510425 70 COSMIC
COSN5354583 71 COSMIC
COSN30143436 72 COSMIC
COSN31517416 105 COSMIC
COSN30192314 113 COSMIC
COSN30532421 120 COSMIC
COSN30532423 219 COSMIC
COSN31559612 219 COSMIC
COSN24565700 256 COSMIC
COSN30111585 287 COSMIC
COSN30495473 292 COSMIC
COSN29468829 293 COSMIC
COSN30527538 315 COSMIC
COSM9067649 319 COSMIC
COSM2181837 333 COSMIC
COSM7835675 334 COSMIC
COSM6051959 362 COSMIC
COSM3976100 366 COSMIC
COSM3473347 379 COSMIC
COSN30163922 417 COSMIC
COSN30172766 430 COSMIC
COSN31557033 441 COSMIC
COSN20090353 457 COSMIC
COSN30169078 479 COSMIC
COSN31573919 488 COSMIC
COSN28877102 540 COSMIC
COSN26579261 659 COSMIC
COSN23064151 761 COSMIC
COSN8892001 810 COSMIC
COSN1089169 841 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1326079243 1 dbSNP
rs781791080 3 dbSNP
rs1015591863 6 dbSNP
rs199619627 10 dbSNP
rs1202236644 14 dbSNP
rs370449855 15 dbSNP
rs1198092675 23 dbSNP
rs1251997853 24 dbSNP
rs782810122 26 dbSNP
rs1416831614 27 dbSNP
rs782147101 28 dbSNP
rs1180616840 29 dbSNP
rs201680381 30 dbSNP
rs782701021 31 dbSNP
rs375087727 34 dbSNP
rs1429624358 36 dbSNP
rs200520312 46 dbSNP
rs782087608 48 dbSNP
rs199525322 49 dbSNP
rs1173901114 63 dbSNP
rs1405096961 69 dbSNP
rs1462385793 71 dbSNP
rs11548265 72 dbSNP
rs1394387691 72 dbSNP
rs1390946117 76 dbSNP
rs1347693906 83 dbSNP
rs201312925 98 dbSNP
rs782703204 104 dbSNP
rs200341358 105 dbSNP
rs997127201 107 dbSNP
rs202129693 108 dbSNP
rs1194797464 113 dbSNP
rs1268979528 117 dbSNP
rs201197613 120 dbSNP
rs1196858002 129 dbSNP
rs1033630105 144 dbSNP
rs782630590 144 dbSNP
rs1428296476 153 dbSNP
rs200328242 154 dbSNP
rs782430874 158 dbSNP
rs903604073 173 dbSNP
rs1371325868 176 dbSNP
rs1042021195 178 dbSNP
rs1461542567 190 dbSNP
rs1164223117 194 dbSNP
rs1367545750 199 dbSNP
rs1403283799 202 dbSNP
rs1302819623 205 dbSNP
rs1009200425 212 dbSNP
rs587671189 213 dbSNP
rs587597126 222 dbSNP
rs11548267 223 dbSNP
rs201254525 226 dbSNP
rs1307357516 229 dbSNP
rs1246179195 231 dbSNP
rs200103315 236 dbSNP
rs1038649004 252 dbSNP
rs941413556 253 dbSNP
rs1219766949 257 dbSNP
rs201320142 257 dbSNP
rs1486065700 261 dbSNP
rs200787005 263 dbSNP
rs200019445 264 dbSNP
rs1188121171 267 dbSNP
rs201541795 268 dbSNP
rs1259405106 273 dbSNP
rs200707145 273 dbSNP
rs199517322 277 dbSNP
rs782254317 281 dbSNP
rs782040476 287 dbSNP
rs1422873570 288 dbSNP
rs1163157748 289 dbSNP
rs782409963 291 dbSNP
rs1455541581 293 dbSNP
rs782201838 297 dbSNP
rs201687616 301 dbSNP
rs1361720390 302 dbSNP
rs587640562 309 dbSNP
rs1317830856 310 dbSNP
rs782497082 319 dbSNP
rs1243218733 320 dbSNP
rs74126634 329 dbSNP
rs782355078 330 dbSNP
rs1317070700 331 dbSNP
rs782641325 334 dbSNP
rs1258685911 336 dbSNP
rs1485439910 346 dbSNP
rs71622685 349 dbSNP
rs201553051 351 dbSNP
rs1442849575 366 dbSNP
rs370719475 372 dbSNP
rs1408820685 373 dbSNP
rs1421053428 381 dbSNP
rs376130182 383 dbSNP
rs782434457 384 dbSNP
rs1470537484 399 dbSNP
rs781834956 399 dbSNP
rs782714941 403 dbSNP
rs373144924 404 dbSNP
rs1283032770 405 dbSNP
rs1225074956 406 dbSNP
rs200240863 407 dbSNP
rs964686469 409 dbSNP
rs369757504 411 dbSNP
rs782123265 412 dbSNP
rs781990836 423 dbSNP
rs1459877935 425 dbSNP
rs1033143052 427 dbSNP
rs199646767 432 dbSNP
rs782155978 435 dbSNP
rs1175683016 438 dbSNP
rs1471220865 438 dbSNP
rs1407611915 440 dbSNP
rs781939905 441 dbSNP
rs201411127 442 dbSNP
rs967793541 446 dbSNP
rs1480967385 455 dbSNP
rs1021139844 456 dbSNP
rs587650711 457 dbSNP
rs1427658128 468 dbSNP
rs1009295416 471 dbSNP
rs1330183276 475 dbSNP
rs1354581814 480 dbSNP
rs200528248 495 dbSNP
rs1443815756 497 dbSNP
rs1296089314 507 dbSNP
rs1349420951 512 dbSNP
rs1223761748 517 dbSNP
rs1056088933 534 dbSNP
rs202091565 542 dbSNP
rs1002071391 543 dbSNP
rs1321189724 545 dbSNP
rs1218538267 549 dbSNP
rs1273684851 550 dbSNP
rs1439623081 557 dbSNP
rs201035904 565 dbSNP
rs200432613 566 dbSNP
rs1251180087 572 dbSNP
rs1038170929 579 dbSNP
rs1201890717 581 dbSNP
rs374950774 595 dbSNP
rs1267163504 599 dbSNP
rs1480337676 604 dbSNP
rs587750560 612 dbSNP
rs1422353936 613 dbSNP
rs1408716053 615 dbSNP
rs782780478 617 dbSNP
rs1167629104 619 dbSNP
rs1369422056 628 dbSNP
rs201855910 640 dbSNP
rs201013519 642 dbSNP
rs199926282 643 dbSNP
rs201754927 649 dbSNP
rs1343383660 650 dbSNP
rs1435574620 652 dbSNP
rs908397072 655 dbSNP
rs1270696680 657 dbSNP
rs201261520 669 dbSNP
rs189623935 671 dbSNP
rs934098020 672 dbSNP
rs201818552 673 dbSNP
rs782398924 676 dbSNP
rs1224968712 678 dbSNP
rs200654934 683 dbSNP
rs1451388814 697 dbSNP
rs1194260783 701 dbSNP
rs1244206765 708 dbSNP
rs975415056 709 dbSNP
rs964294762 711 dbSNP
rs1474684444 722 dbSNP
rs1188518121 725 dbSNP
rs1388977151 725 dbSNP
rs199961462 732 dbSNP
rs1165067859 733 dbSNP
rs201826227 741 dbSNP
rs200779875 756 dbSNP
rs1404405590 758 dbSNP
rs184760849 761 dbSNP
rs145520277 762 dbSNP
rs1428506570 768 dbSNP
rs587653801 773 dbSNP
rs1296836919 781 dbSNP
rs1383587771 786 dbSNP
rs1248347611 791 dbSNP
rs1289688909 799 dbSNP
rs987839448 799 dbSNP
rs1355834224 802 dbSNP
rs960481624 806 dbSNP
rs1205966190 812 dbSNP
rs141869795 825 dbSNP
rs1445673452 826 dbSNP
rs1208624033 833 dbSNP
rs1244354140 834 dbSNP
rs1444715325 837 dbSNP
rs199703472 847 dbSNP
rs1366221966 850 dbSNP
rs1472234705 863 dbSNP
rs1158820666 865 dbSNP
rs1386832591 867 dbSNP
rs201778614 869 dbSNP
rs200242333 871 dbSNP
rs1319793954 873 dbSNP
rs1406641688 876 dbSNP
rs1454523875 878 dbSNP
rs587697424 882 dbSNP
rs201790284 884 dbSNP
rs1281537045 896 dbSNP
rs1348965704 900 dbSNP
rs1002284344 902 dbSNP
rs201164589 906 dbSNP
rs1208564628 915 dbSNP
rs200373203 915 dbSNP
rs1264151521 919 dbSNP
rs201624411 931 dbSNP
rs201040334 953 dbSNP
rs200032971 955 dbSNP
rs1202356299 959 dbSNP
rs782536458 960 dbSNP
rs1441378528 961 dbSNP
rs202107491 962 dbSNP
rs1182055365 964 dbSNP
rs1365244260 965 dbSNP
rs1017248365 969 dbSNP
rs201358832 976 dbSNP
rs1158068349 978 dbSNP
rs192534646 980 dbSNP
rs587721948 981 dbSNP
rs3209394 989 dbSNP
rs3209395 990 dbSNP
rs886937202 998 dbSNP
rs200690018 1003 dbSNP
rs1301052192 1011 dbSNP
rs200102444 1016 dbSNP
rs1392090849 1020 dbSNP
rs1331123427 1023 dbSNP
rs1334140525 1030 dbSNP
rs371548626 1038 dbSNP
rs1228032853 1045 dbSNP
rs1284277778 1062 dbSNP
rs1326144084 1064 dbSNP
rs1222189542 1067 dbSNP
rs587673339 1082 dbSNP
rs1255974143 1084 dbSNP
rs587595457 1085 dbSNP
rs1195944493 1090 dbSNP
rs202078358 1094 dbSNP
rs1252064230 1109 dbSNP
rs1481840151 1112 dbSNP
rs1181050450 1114 dbSNP
rs1269293551 1118 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggccAGGCAUGUUUGAGACguc 5'
              ||| | |   |||||   
Target 5' caccUCCCUUC-CCCUCUG--- 3'
1 - 18
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000360244.4 | 3UTR | CACCUCCCUUCCCCUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.547 0.04 0.345 0.15 11 Click to see details
LIHC 0.594 0.05 0.417 0.13 9 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
LUSC -0.411 0.29 -0.600 0.2 4 Click to see details
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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