miRTarBase - #MIRT482044


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pre-miRNA Information
pre-miRNA hsa-mir-6888   
Genomic Coordinates chr2: 159186835 - 159186901
Description Homo sapiens miR-6888 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6888-5p
Sequence 6| AAGGAGAUGCUCAGGCAGAU |25
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766276740 4 dbSNP
rs1348014091 6 dbSNP
rs755543842 16 dbSNP
rs1224830578 19 dbSNP
Putative Targets

Gene Information
Gene Symbol AMER1   
Synonyms FAM123B, OSCS, WTX
Description APC membrane recruitment protein 1
Transcript NM_152424   
Expression
Putative miRNA Targets on AMER1
3'UTR of AMER1
(miRNA target sites are highlighted)		 
>AMER1|NM_152424|3'UTR
   1 TTATTATCAATTCTGGAGTAGGGACACGGGGCCTGAGCATGTGAATGGGGATCAGGGGTTGGGCAGAAGGGTGGGGGGGT
  81 GGGGGTTGTTGTTTAACTTGAAAACCCTTTGGGCCAAGGAAAACTCCTGTGAGTTTTCACCTTGGTTTTCCCACTTGCCT
 161 CTTCTGCCATCTATGGCCACGTTCAACTCAAGTGCATCTGCCCAGGGAGGCTGCTGCTGCTACTGCACTCCAGTTTTTGC
 241 TTTCGAGGTTTCTTCTTGTGACCCACGCTGGGTTTGGGATGCTGTAATTTTGTGCCTATTCCAGTTGCCAAGTTAGTGAT
 321 TATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACACACACACACATACATA
 401 CACACACACACACAAACACACATGCACACACATATATAGCATGCATCCTTGACACAGGCTAAACCTTTAGTGCCCCCTGC
 481 CCCTTTCCCCCAATGAATGATGAACCACTGATTAGCAGCCAAGTCTGCATTGCCTCCCGCTTGGGGAAGTGGGGCTTATT
 561 TGCTATTAGCAATGTGAAATTATGGTACAGATCCTCCCCACCCCTATTCCTTTTGGCCTGGCATAGCTGCCATCATTATA
 641 TCAGATGACTATAAGCTATTCATCCCAGCTAGCTGTCCTTAGAGAGGATCAAGTAGCGTGTGTCTCACAGCCTATCGCTG
 721 TGGACTTTGGCATCATGACCAGATGGGGGCCTTTTAACTGTCCTGCCATAGCTTGGGTTAAAGACAAAAATGCTAATCCC
 801 CTTGATGGAGTGATAAAATTCATCCATTTGCAAACAGAAGACAAAACAAGGTTCTGTTGTGGACACTGCCATAGAGTGTT
 881 GAGCTCCGGAATGATAGGATTTTTTTTCCTTCTTTTAAGCTTGTGACTACCTGAGTTGCAGATGCTTTTGAATTTTTGTT
 961 CTTTTTTCCTCTAAAGGAAATTTTCATAATCTCATCACAAGGAACACGGTCTTTTAATTGAGATAAGGGAAGAGAAGCAA
1041 CCTAAATTAGGCTTGACTATAGGGGCTGGGGTTTTTGTGGAGTGTAGGGGAAAGATAGAAAATGAGGGTCCATTTATCAC
1121 AGCCAGCAAGAAAGGGGATTTCAGACCATGCAGAGCTTAAGGTATCTCAGTTTCTTAAAAGGGAAAACTCCCTTCTCAAG
1201 CCTCCCAACACAAAATGTTCCTTAAGCCTTGCCCATCCCATCATTTGGACTCTGTAATAAGGCCCCAGGTTTGCACTCCC
1281 AAGACAGGATACCAAAGGCATCTCAGCTGCTGTTCTGGGCCCTTTAAAGAGCTTTTATCTTCCAATTAGCCGAGTCCTTA
1361 GCATCATCAAATGACAGGGCTTCTTGGCAGTTGCAGCCCTTTATGGAATGAATGGCACCCTCCCTTCTCCTGCATCCATG
1441 CAGTTTTCATGTTAAACTAGGTTGGAAATACTGGTGGGGAAGAGCTTGCTGTCAGGAAGACATTGGAACAGGCTAATCTT
1521 GCCAAGCTCAACCTCTCATTAATCACCTGTAGGAGAGGGTTCCTTTTACATGTCTTTATTGGAAATGGCATATGGAACAT
1601 TTTTTGCTTGGCTGTGTTCACTCAAATTATGATTATTGCACCCTCGCCCTCACATCCCACCATCTCCATGCCTGTTGAGA
1681 GAAGAAGTCAACAGGGTTCTTGCCATTCCTGAGATATGGCAATTTAGCTTGGGAACAGATGCTGTTTGCCCCCTAAGTCA
1761 AGGTGACTTTGTGGGCAAACTGTTTCTTGGCCAGGGGATGTGTCCATGCTGGTCTTTGTCACCATTTCTCAGATTGGGGT
1841 TGGCCCAGTGCCCTTACTCACAAATAGCAGACCTGGCTGGTAGAAGCTGCACCCCTGGAAGCACCACATGAATTTGCATG
1921 GCACTAACACCACCACTCAAGGGACCCAGACCAGCTCTTCAGGCTGACTTTGGCTACAGATACATTGTGAAGAAATGTAT
2001 CTGTTGTGGAGCTGGAGAATGAAAGAGGGTGAGGAAGGCCCTCCTTACCCCAAGCACAGCATTCCAAGAGAGAAGTGCCC
2081 AAATTCCAACTTTCTGGCCTCTTACCAAAGCTGCTCTGGGATGGTGGGGCTGAAATTGGCCTGGCTATTTGGCAGGAAGT
2161 AAACACTCACCAAATGCCTTTACAACAGGGAAGAACCCACCTCTTGCCTCTTCTTTCAGGGCAGCTTGAGCTCCTGTCTA
2241 CATGTGGACTGTGCCAGCCACAGCAGGCGGTAGAGCCATCACCAGCCTCCAGACCCTGCTGGAGAAGGGCCACCAGCCTA
2321 TCTGGGAAGAGAAAAAGGAGGTGGCCAACCTTTGGCTAAGGGCTGAGAGCTGCCCTCAGGATCAGGAAGGCAGCATGAGG
2401 CATTGTCTCTGAGGGGCACTGGCATAGCCCTGACACACTTTGTTGGGCTTTGGAAGGTCACACACCACAGAGTAGGGCCT
2481 GGGGCTGAGTGAGAGTTCATGGTTTGGACAGCCTTGCTGCCTGCAAGTCCCTTCACTGCCCTAGCCAGCCCAGGAATAGG
2561 ATCCTTACCACCTGAAGTGGGGCAGCCAGGATATGTGGCTGCAGAAGCAGGTTCCTTTGAATTTCTAGAGCTAAGCAGTT
2641 TGTGGCTGAAACCCAATGGCAGCCTAGGGGAGGAAGGAAGACCTGTCTGGGGACCCATGGTGTTGACAGCACAGGGTGAC
2721 ATTGGGAGAGCCAGCCAAGCTTCAGGCCTGTTTCCAAACACAGACTAGTGCTGGCTTGGGTGGCAGCAAATACACCCCAG
2801 ACCACTAAAACTGTTGATATCATGTCCACACCTCCAAGAGTACTACTAGATGAACAACATGTCTCCATTGCAAGGTCCTG
2881 GAATAATGCTTTTGGATGTGATTTTAAGGGAAAATGGGACTTAGTGGAAGTAGCTGCCTTCATCTTATTACCCAATAGGC
2961 CTAGTGCCAGACAGCTGTGATCCTGAGAATTCCCAGATGAGACTGGTCCTTGGAGGACCAGTGAATGTGGATAGAGAAGG
3041 CCACCTAGTAGGCCTCTCCCAGGGCCAGGATGCCAGTTTCTTGGTGCTTTAGAGTCTCCAAGGAAGCACTGCCTTGGGGC
3121 CCAGTTCAAGCCAGCCCTACCTATCTGGCCTCAGCTTGGGTACCAGGCCACAAGACTGCCCGGATAATGGGTTCAGTAAA
3201 CACCAGTCTCTCTCCCTCCTTAGTCCTATGCCAAGAAGGGAAGTAGCTTCACACACTCAGGAGGCTGGGTGTGTACCCTT
3281 CATCCTGCTGCCAGCAGCTTTCCTTACCTGTGCCAGTGCCACCACCCCACCTGCCCTCAGCCCCCAGGCCCAGTTGCTAG
3361 AGGGAGGCATGGGGTTTAGCAGGGAGACTTCAAGTTTACCCATGTGTATGTTGCATTCAAGTTGTTTTTAATATATATAT
3441 ATATATATATCAAAAGTCAATTATCTATTTTTATATTGTTTGCATTTTATATTCATGGAAAACAATGTTTATCAATTGTT
3521 CTTTTCTGATTTATTTTTAAGCGGTGCTGTTTACAGTTTTAAACAAAACAAAGATGACACAAAAATTGCTGCTGCTTGTG
3601 CAGAGGGCTGGCATCTCAACTGCCTAGGGCCCTCCCTCTTTCCCCTCTCCCTACCTTAGCTGTACCACACTGTCCGTTCC
3681 CTCCCCCCATGATAGGGACAGCAGAAGATGCCCAGGTACTGAAGACAAACGCCAAGTGACTCAGGCGTGTGGGACCTGGT
3761 AGACAGCTTGTCATTTTCTGGCTTTATTTTATGTTTTTCTTTCTTTTGAACCCTTCTTCCCCATGTCTAGACCCTCTGAG
3841 AGTACTCATGTGTCTTATTTTTTTTCCTCGTTATGTTTTGTGCTTTAGTTTTGAAATCAGAGTGCCCATGTTGTGCTATT
3921 TGTCTTGTTGAGTTTCTCCAAAGGAGCATTTTGGGAACATTCTCCACCCAATGGGGAAGGAAGGGGGTTTCAACCATGTC
4001 CCCTTTCCCCAAGAAGCTGTGGGAGACAGATGACAATGATGCTTGCACTATCAGGAATTTACCATCTCGTTGAGGAAACC
4081 CTTGCATAGGACTTCCTAGGAGCTCAGTTGATTGTGACATTTTCCCAGAAGAGAGGCTTTGGGGAACTCCTTCACCCCTC
4161 TTGCTGCTTTGGGGGAATCTCCTCCCCTACCACCATTCCCCCTCCCCTGCCCTGCTCCAGCTCACACGTGGATGGTACTT
4241 TGGGGAACAGTGACTTTCAGGGTGATGGCTTGCTGGCCTGATCCCTGACTTTCCAATCCTATAGTCACTCCAAAGAAGAA
4321 AATCCACATGGTATGTATATGTGTGAGGGTTGGGTCTATTGAGAGGTGGGACTTTAATTATTGTTATTATTATTGGTGCT
4401 TATTTTTCCTGCTGTATATGGGGGTGGGGGTGGGGGGGAATAAAACAGGAATGTATATTTAGGTCATGTTAAATAAAATG
4481 GCTGGAGGAAGGAGGGAAGAAATTAGGAACTGCAGTACATCATCACCCCAGGTGTAAGAGTTATTTCTCTCCCAGTGCAG
4561 AAAGGGGAGTGTGGCCCCTGGCTGTACCTGAGCTTCCTCTTCTCCATCCCTGAGACATCACAGAATCACCCGGGTTCTGA
4641 CCTCTCCACTTCTAGCTCTCACTGACATCTGGATATCTTGATGCACTGCCTGTTTGTAACAACATATACTTCTTTGCTGA
4721 ATGCTAATAAACTTCTGGGTTCAAGAGGGAACCCCTCAGTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaGACGGA---CUCGUAGAGGAa 5'
            ||||:|   |:| ||||||| 
Target 5' tgCTGCTTTGGGGGAATCTCCTc 3'
 4162 - 4184 162.00 -19.10
2 
miRNA  3' uagACGGACUCGUAGAGGaa 5'
             | ||  | |||||||  
Target 5' acaTCCC--ACCATCTCCat 3'
 1652 - 1669 129.00 -10.00
3 
miRNA  3' uagACGGACUCGUAGAGGaa 5'
             |||:| || :|||||  
Target 5' tggTGCTTTAGAGTCTCCaa 3'
 3082 - 3101 129.00 -13.00
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774381591 4 dbSNP
rs1461270928 5 dbSNP
rs768789626 7 dbSNP
rs1351268252 8 dbSNP
rs1461251173 10 dbSNP
rs1163019569 12 dbSNP
rs1249199210 14 dbSNP
rs200923986 19 dbSNP
rs1486581554 20 dbSNP
rs772094541 24 dbSNP
rs775426593 27 dbSNP
rs745699635 28 dbSNP
rs1316886146 29 dbSNP
rs780959497 31 dbSNP
rs1381875275 32 dbSNP
rs1298249751 37 dbSNP
rs770546383 50 dbSNP
rs1180735663 53 dbSNP
rs913516302 54 dbSNP
rs1259603851 59 dbSNP
rs990817932 60 dbSNP
rs1346580538 61 dbSNP
rs1284320172 62 dbSNP
rs1225139222 64 dbSNP
rs1348054100 65 dbSNP
rs1278152856 66 dbSNP
rs761049370 68 dbSNP
rs1420388858 69 dbSNP
rs750946466 72 dbSNP
rs1315409925 73 dbSNP
rs772303000 73 dbSNP
rs1232351255 74 dbSNP
rs1483436070 75 dbSNP
rs1184917581 78 dbSNP
rs950830529 79 dbSNP
rs1164183347 80 dbSNP
rs865865393 80 dbSNP
rs1413446414 81 dbSNP
rs1374946963 83 dbSNP
rs1374118055 86 dbSNP
rs1416491207 86 dbSNP
rs1470967406 86 dbSNP
rs767652148 110 dbSNP
rs1407823980 126 dbSNP
rs1008386457 144 dbSNP
rs890921342 163 dbSNP
rs1411135409 166 dbSNP
rs1028144587 168 dbSNP
rs1354732209 180 dbSNP
rs1448755028 181 dbSNP
rs1285701873 190 dbSNP
rs1158200336 194 dbSNP
rs762045374 196 dbSNP
rs1212977041 201 dbSNP
rs761967224 203 dbSNP
rs903701619 227 dbSNP
rs1044013137 231 dbSNP
rs1255563985 233 dbSNP
rs1185778621 239 dbSNP
rs1485276533 244 dbSNP
rs1188895927 245 dbSNP
rs1242227321 250 dbSNP
rs959558342 266 dbSNP
rs1474651609 267 dbSNP
rs1166894274 268 dbSNP
rs774679801 271 dbSNP
rs1431314973 278 dbSNP
rs1171197644 284 dbSNP
rs1374363298 292 dbSNP
rs1396515905 304 dbSNP
rs1336115955 316 dbSNP
rs1324428649 317 dbSNP
rs1429775435 321 dbSNP
rs1297066085 322 dbSNP
rs1444764894 328 dbSNP
rs1366183326 331 dbSNP
rs1283200897 332 dbSNP
rs1213896063 335 dbSNP
rs1335979221 337 dbSNP
rs1201473508 339 dbSNP
rs1281358959 339 dbSNP
rs1445585866 340 dbSNP
rs386417044 340 dbSNP
rs10628043 341 dbSNP
rs1191415458 341 dbSNP
rs763256131 341 dbSNP
rs1320971882 342 dbSNP
rs1360103653 342 dbSNP
rs1382714336 342 dbSNP
rs1390609321 343 dbSNP
rs1437515810 343 dbSNP
rs775106309 343 dbSNP
rs1234077371 344 dbSNP
rs1276750577 344 dbSNP
rs1349158944 345 dbSNP
rs1208697915 346 dbSNP
rs1211393171 346 dbSNP
rs1269140502 346 dbSNP
rs1466547778 346 dbSNP
rs1295444245 347 dbSNP
rs1232028712 348 dbSNP
rs1200354428 349 dbSNP
rs1378994174 350 dbSNP
rs1270856142 351 dbSNP
rs1433055889 352 dbSNP
rs868572470 353 dbSNP
rs866789986 355 dbSNP
rs1462145953 356 dbSNP
rs1390277925 357 dbSNP
rs866473703 357 dbSNP
rs1162479474 358 dbSNP
rs867711555 359 dbSNP
rs1420073047 360 dbSNP
rs199713693 361 dbSNP
rs5964738 363 dbSNP
rs57262707 364 dbSNP
rs1163804458 365 dbSNP
rs1165245918 365 dbSNP
rs1182760044 365 dbSNP
rs1205241247 365 dbSNP
rs1211306935 365 dbSNP
rs1231861130 365 dbSNP
rs1247775520 365 dbSNP
rs1265283633 365 dbSNP
rs1289559013 365 dbSNP
rs1331590370 365 dbSNP
rs1368878394 365 dbSNP
rs1414114196 365 dbSNP
rs1468777945 365 dbSNP
rs1474221031 365 dbSNP
rs1482453007 365 dbSNP
rs1488599597 365 dbSNP
rs567386357 365 dbSNP
rs5918540 365 dbSNP
rs1167099597 367 dbSNP
rs1169296092 367 dbSNP
rs1181260732 367 dbSNP
rs1256536457 367 dbSNP
rs1388565703 367 dbSNP
rs1407150951 367 dbSNP
rs1425368577 367 dbSNP
rs1484633399 367 dbSNP
rs867354549 367 dbSNP
rs1293956984 369 dbSNP
rs1302796183 369 dbSNP
rs1380295702 369 dbSNP
rs1398157536 369 dbSNP
rs1464962478 369 dbSNP
rs868236960 369 dbSNP
rs867520710 371 dbSNP
rs1240992043 373 dbSNP
rs1276132100 373 dbSNP
rs1345148612 373 dbSNP
rs1184546867 375 dbSNP
rs1209289757 375 dbSNP
rs1247258751 375 dbSNP
rs1274766664 375 dbSNP
rs1484079402 375 dbSNP
rs1449055372 377 dbSNP
rs1189506574 379 dbSNP
rs1392044775 380 dbSNP
rs548962051 385 dbSNP
rs891758313 389 dbSNP
rs1469496797 391 dbSNP
rs1275444056 392 dbSNP
rs1212144986 393 dbSNP
rs1175889958 395 dbSNP
rs1207825398 395 dbSNP
rs1250136310 395 dbSNP
rs1318924422 395 dbSNP
rs1388431935 395 dbSNP
rs1435305808 395 dbSNP
rs1468092657 395 dbSNP
rs867107024 395 dbSNP
rs1190683662 397 dbSNP
rs751390282 397 dbSNP
rs769633987 399 dbSNP
rs1321484286 401 dbSNP
rs1053158030 403 dbSNP
rs1458101676 403 dbSNP
rs745734937 403 dbSNP
rs938765142 404 dbSNP
rs1293571669 405 dbSNP
rs1435397099 405 dbSNP
rs1369164773 407 dbSNP
rs1226445687 409 dbSNP
rs1287679121 415 dbSNP
rs1329517715 415 dbSNP
rs1355604220 415 dbSNP
rs1450054732 415 dbSNP
rs770424850 415 dbSNP
rs776607488 415 dbSNP
rs1274408218 419 dbSNP
rs1489525864 423 dbSNP
rs746561988 424 dbSNP
rs928746669 427 dbSNP
rs1216805098 429 dbSNP
rs5964348 439 dbSNP
rs1360019717 446 dbSNP
rs1473238874 458 dbSNP
rs1161822350 464 dbSNP
rs980224252 477 dbSNP
rs1412128084 481 dbSNP
rs188858579 493 dbSNP
rs200234328 506 dbSNP
rs1296906903 508 dbSNP
rs1441957746 519 dbSNP
rs1407456287 527 dbSNP
rs920109533 531 dbSNP
rs1351016953 538 dbSNP
rs982364944 539 dbSNP
rs961581958 543 dbSNP
rs1282191759 553 dbSNP
rs757940675 555 dbSNP
rs971438605 567 dbSNP
rs1323663807 577 dbSNP
rs1457275926 579 dbSNP
rs974689990 588 dbSNP
rs961687178 591 dbSNP
rs1172506989 601 dbSNP
rs1361609103 602 dbSNP
rs1203096892 609 dbSNP
rs1274100565 610 dbSNP
rs1483649556 614 dbSNP
rs1185034731 623 dbSNP
rs1236038403 632 dbSNP
rs747868862 634 dbSNP
rs1472692737 643 dbSNP
rs1015674388 658 dbSNP
rs1418200728 661 dbSNP
rs1193636491 664 dbSNP
rs1415521078 669 dbSNP
rs1427486123 670 dbSNP
rs1167407372 677 dbSNP
rs1370691908 681 dbSNP
rs780218507 686 dbSNP
rs780705386 687 dbSNP
rs986508847 694 dbSNP
rs756518696 697 dbSNP
rs891556954 698 dbSNP
rs1032792754 708 dbSNP
rs1028046629 716 dbSNP
rs755930835 717 dbSNP
rs750956765 720 dbSNP
rs1342987895 732 dbSNP
rs1198030976 736 dbSNP
rs1207275750 742 dbSNP
rs1442142397 748 dbSNP
rs1022137926 749 dbSNP
rs1363053012 750 dbSNP
rs11380304 758 dbSNP
rs201773901 759 dbSNP
rs1009889618 760 dbSNP
rs1447249994 761 dbSNP
rs892421021 767 dbSNP
rs757385889 768 dbSNP
rs1187566885 773 dbSNP
rs1390217567 774 dbSNP
rs1450803307 775 dbSNP
rs1170683513 793 dbSNP
rs751639039 796 dbSNP
rs1415040066 804 dbSNP
rs1235041806 815 dbSNP
rs1386244906 820 dbSNP
rs1433103994 821 dbSNP
rs1297182380 839 dbSNP
rs1038961341 842 dbSNP
rs1229717479 843 dbSNP
rs767739496 860 dbSNP
rs907224138 872 dbSNP
rs890413015 874 dbSNP
rs1044433486 882 dbSNP
rs764297331 887 dbSNP
rs142172661 888 dbSNP
rs1265336315 897 dbSNP
rs1463849496 899 dbSNP
rs1207642959 903 dbSNP
rs1248277442 908 dbSNP
rs775793027 908 dbSNP
rs1196128251 917 dbSNP
rs1299629921 919 dbSNP
rs1439934370 925 dbSNP
rs929351735 932 dbSNP
rs184461050 941 dbSNP
rs1038575618 943 dbSNP
rs1456512502 945 dbSNP
rs1174167886 960 dbSNP
rs973480721 961 dbSNP
rs940250788 979 dbSNP
rs1384197171 989 dbSNP
rs1436118803 992 dbSNP
rs1330644336 999 dbSNP
rs926802756 1005 dbSNP
rs1285760479 1006 dbSNP
rs192160710 1007 dbSNP
rs1228152440 1008 dbSNP
rs982734547 1012 dbSNP
rs1352356856 1016 dbSNP
rs987474292 1024 dbSNP
rs1265996310 1035 dbSNP
rs1451705051 1059 dbSNP
rs955001616 1060 dbSNP
rs1174977687 1077 dbSNP
rs1024362283 1092 dbSNP
rs920934986 1096 dbSNP
rs111885962 1103 dbSNP
rs1159617809 1108 dbSNP
rs1251729749 1136 dbSNP
rs1179251245 1150 dbSNP
rs1479952747 1156 dbSNP
rs1455518124 1161 dbSNP
rs955716012 1174 dbSNP
rs975126422 1181 dbSNP
rs1387443278 1192 dbSNP
rs1305100869 1204 dbSNP
rs1251803851 1210 dbSNP
rs1409791817 1235 dbSNP
rs1289354640 1245 dbSNP
rs967825373 1249 dbSNP
rs1242110051 1260 dbSNP
rs1264495357 1262 dbSNP
rs1212182386 1265 dbSNP
rs900303053 1268 dbSNP
rs1486721432 1278 dbSNP
rs1022544376 1287 dbSNP
rs1271938002 1306 dbSNP
rs1278222770 1319 dbSNP
rs1009425564 1320 dbSNP
rs759442467 1322 dbSNP
rs148678846 1334 dbSNP
rs1185621051 1337 dbSNP
rs1421840645 1337 dbSNP
rs1368106023 1343 dbSNP
rs186902129 1351 dbSNP
rs1003431233 1361 dbSNP
rs28653713 1371 dbSNP
rs1313454195 1373 dbSNP
rs1429622752 1374 dbSNP
rs1299271355 1380 dbSNP
rs1416523952 1381 dbSNP
rs780297964 1395 dbSNP
rs772670498 1397 dbSNP
rs1044382381 1403 dbSNP
rs1012952842 1420 dbSNP
rs771619669 1422 dbSNP
rs1312533904 1423 dbSNP
rs1340691513 1432 dbSNP
rs1247763708 1442 dbSNP
rs766767101 1456 dbSNP
rs183285307 1461 dbSNP
rs1205704573 1468 dbSNP
rs144171633 1488 dbSNP
rs940175257 1494 dbSNP
rs1482271612 1502 dbSNP
rs899208127 1508 dbSNP
rs1037718443 1511 dbSNP
rs938102416 1525 dbSNP
rs908724619 1531 dbSNP
rs140017010 1537 dbSNP
rs982315835 1547 dbSNP
rs934240405 1558 dbSNP
rs1356774156 1560 dbSNP
rs1465042839 1569 dbSNP
rs746280695 1588 dbSNP
rs949613596 1595 dbSNP
rs1454201837 1606 dbSNP
rs1476449658 1609 dbSNP
rs1318163801 1610 dbSNP
rs1228482636 1611 dbSNP
rs1297188741 1614 dbSNP
rs975113384 1616 dbSNP
rs968183020 1624 dbSNP
rs1232506528 1625 dbSNP
rs914141145 1630 dbSNP
rs915023870 1642 dbSNP
rs955682197 1645 dbSNP
rs781703972 1646 dbSNP
rs1486225907 1657 dbSNP
rs1464660786 1667 dbSNP
rs1187180291 1670 dbSNP
rs757795319 1688 dbSNP
rs978467186 1704 dbSNP
rs773615108 1705 dbSNP
rs1328283692 1728 dbSNP
rs1176000323 1733 dbSNP
rs1017824371 1734 dbSNP
rs1471169890 1739 dbSNP
rs1157482289 1748 dbSNP
rs956543078 1749 dbSNP
rs1035267103 1771 dbSNP
rs752114973 1784 dbSNP
rs1235098373 1793 dbSNP
rs1386106940 1797 dbSNP
rs1283857452 1810 dbSNP
rs770248514 1814 dbSNP
rs1226331371 1827 dbSNP
rs1311408434 1828 dbSNP
rs1328715555 1829 dbSNP
rs1382356188 1838 dbSNP
rs1386491370 1839 dbSNP
rs374022848 1843 dbSNP
rs1022904098 1844 dbSNP
rs954724465 1845 dbSNP
rs1012900355 1846 dbSNP
rs898503211 1856 dbSNP
rs1016996484 1867 dbSNP
rs993831594 1872 dbSNP
rs5964737 1873 dbSNP
rs887250798 1880 dbSNP
rs1400878457 1883 dbSNP
rs192168352 1888 dbSNP
rs1476478923 1905 dbSNP
rs1051301721 1915 dbSNP
rs934230337 1916 dbSNP
rs1303291514 1924 dbSNP
rs900106910 1927 dbSNP
rs1039371426 1929 dbSNP
rs1037687250 1934 dbSNP
rs1287459646 1946 dbSNP
rs1002218436 1957 dbSNP
rs1224499740 1959 dbSNP
rs1286614383 1964 dbSNP
rs1320206411 1965 dbSNP
rs946372465 1972 dbSNP
rs752857319 1987 dbSNP
rs1490978726 1997 dbSNP
rs1180677524 2006 dbSNP
rs765537189 2009 dbSNP
rs914909998 2011 dbSNP
rs1470721829 2019 dbSNP
rs1187452371 2028 dbSNP
rs188024095 2040 dbSNP
rs935083137 2049 dbSNP
rs927793074 2050 dbSNP
rs1422944954 2080 dbSNP
rs1163629744 2088 dbSNP
rs1366945748 2131 dbSNP
rs753582971 2136 dbSNP
rs766194048 2137 dbSNP
rs771910658 2141 dbSNP
rs745336821 2164 dbSNP
rs1282281241 2186 dbSNP
rs1377212046 2187 dbSNP
rs973313114 2204 dbSNP
rs1052666013 2233 dbSNP
rs1361727715 2257 dbSNP
rs183845317 2261 dbSNP
rs773149600 2268 dbSNP
rs376526235 2269 dbSNP
rs1004294902 2278 dbSNP
rs1264864377 2286 dbSNP
rs1228027415 2296 dbSNP
rs925585828 2301 dbSNP
rs1292769610 2302 dbSNP
rs887232154 2309 dbSNP
rs1371201861 2313 dbSNP
rs1029816681 2318 dbSNP
rs998381516 2323 dbSNP
rs900013383 2326 dbSNP
rs964400534 2331 dbSNP
rs1388983033 2332 dbSNP
rs1420139182 2336 dbSNP
rs1411631895 2341 dbSNP
rs910281947 2344 dbSNP
rs1358386088 2345 dbSNP
rs1462904302 2347 dbSNP
rs987663921 2353 dbSNP
rs1374897475 2355 dbSNP
rs1337648531 2356 dbSNP
rs1166726397 2359 dbSNP
rs1039952654 2360 dbSNP
rs771474050 2368 dbSNP
rs946960792 2375 dbSNP
rs1226260104 2380 dbSNP
rs893437436 2389 dbSNP
rs1449105435 2394 dbSNP
rs1253931697 2409 dbSNP
rs1340634453 2417 dbSNP
rs1052564068 2427 dbSNP
rs1195729401 2439 dbSNP
rs756737178 2440 dbSNP
rs935092156 2465 dbSNP
rs963280223 2470 dbSNP
rs1461170544 2474 dbSNP
rs1203835689 2492 dbSNP
rs1244607092 2502 dbSNP
rs927747549 2508 dbSNP
rs1449697108 2512 dbSNP
rs1266347667 2514 dbSNP
rs749204928 2516 dbSNP
rs1016164504 2517 dbSNP
rs1476324059 2520 dbSNP
rs1196339728 2531 dbSNP
rs1170777708 2538 dbSNP
rs1424128199 2551 dbSNP
rs1470139210 2556 dbSNP
rs1341304241 2567 dbSNP
rs1408564083 2577 dbSNP
rs981840515 2578 dbSNP
rs373381382 2582 dbSNP
rs773850096 2587 dbSNP
rs1327121398 2597 dbSNP
rs973313915 2615 dbSNP
rs1046469432 2640 dbSNP
rs768301381 2654 dbSNP
rs1014093508 2675 dbSNP
rs1347963240 2676 dbSNP
rs892595814 2682 dbSNP
rs1305226198 2697 dbSNP
rs748976979 2721 dbSNP
rs777691166 2728 dbSNP
rs1261765605 2736 dbSNP
rs1448231858 2738 dbSNP
rs1329737083 2741 dbSNP
rs1268082018 2747 dbSNP
rs755845519 2750 dbSNP
rs1480762853 2753 dbSNP
rs1201274107 2755 dbSNP
rs1053052182 2757 dbSNP
rs1455794160 2759 dbSNP
rs963660982 2765 dbSNP
rs936878428 2769 dbSNP
rs1323265857 2778 dbSNP
rs1321731827 2786 dbSNP
rs1345428670 2787 dbSNP
rs752545444 2790 dbSNP
rs1349053628 2793 dbSNP
rs1237799078 2796 dbSNP
rs781633353 2799 dbSNP
rs868449847 2822 dbSNP
rs1399194859 2823 dbSNP
rs925510462 2839 dbSNP
rs1352473906 2860 dbSNP
rs1429265716 2861 dbSNP
rs983213555 2868 dbSNP
rs951429610 2870 dbSNP
rs1290455559 2888 dbSNP
rs1395736000 2890 dbSNP
rs142832053 2893 dbSNP
rs943012104 2903 dbSNP
rs1418289114 2910 dbSNP
rs1477139434 2917 dbSNP
rs1376860170 2931 dbSNP
rs747503290 2932 dbSNP
rs1471317747 2942 dbSNP
rs778410388 2951 dbSNP
rs1439328027 2953 dbSNP
rs758377757 2955 dbSNP
rs933086087 2957 dbSNP
rs919071168 2960 dbSNP
rs755270204 2971 dbSNP
rs752870389 2979 dbSNP
rs971861288 3005 dbSNP
rs1204308135 3012 dbSNP
rs778882116 3018 dbSNP
rs1391169648 3019 dbSNP
rs1018461223 3030 dbSNP
rs1337132954 3033 dbSNP
rs1011149055 3039 dbSNP
rs139314855 3045 dbSNP
rs1016133412 3056 dbSNP
rs1052095304 3058 dbSNP
rs537461974 3060 dbSNP
rs1313671882 3061 dbSNP
rs1359565844 3072 dbSNP
rs1217151817 3083 dbSNP
rs980690174 3084 dbSNP
rs1272406736 3086 dbSNP
rs1343769133 3087 dbSNP
rs1431116081 3091 dbSNP
rs1274648905 3092 dbSNP
rs999569530 3109 dbSNP
rs1025398450 3111 dbSNP
rs191137247 3122 dbSNP
rs1182013850 3127 dbSNP
rs1384612275 3129 dbSNP
rs1445329181 3131 dbSNP
rs1165617543 3135 dbSNP
rs751571013 3141 dbSNP
rs1461960162 3152 dbSNP
rs1016812114 3180 dbSNP
rs5918861 3181 dbSNP
rs1001014337 3182 dbSNP
rs1409730030 3189 dbSNP
rs1382812734 3194 dbSNP
rs1376173332 3196 dbSNP
rs947818095 3201 dbSNP
rs916409803 3203 dbSNP
rs754065479 3210 dbSNP
rs1306815512 3218 dbSNP
rs941942005 3227 dbSNP
rs1252814273 3240 dbSNP
rs1342619221 3243 dbSNP
rs1201944477 3261 dbSNP
rs1401837536 3265 dbSNP
rs766107486 3272 dbSNP
rs369868502 3276 dbSNP
rs750326895 3299 dbSNP
rs767534404 3299 dbSNP
rs888765425 3304 dbSNP
rs1051883647 3306 dbSNP
rs12353823 3308 dbSNP
rs1428387974 3319 dbSNP
rs983399261 3320 dbSNP
rs951335231 3321 dbSNP
rs1171766831 3324 dbSNP
rs1181391709 3325 dbSNP
rs1475472635 3330 dbSNP
rs186024552 3348 dbSNP
rs933032508 3358 dbSNP
rs922597794 3359 dbSNP
rs1176231609 3360 dbSNP
rs1406351230 3362 dbSNP
rs1454281282 3365 dbSNP
rs976798807 3385 dbSNP
rs1207346280 3386 dbSNP
rs762974982 3389 dbSNP
rs1297654526 3404 dbSNP
rs1018440837 3408 dbSNP
rs368451249 3411 dbSNP
rs1263578477 3412 dbSNP
rs773867277 3420 dbSNP
rs1205837635 3422 dbSNP
rs1258994399 3430 dbSNP
rs1011514302 3434 dbSNP
rs1284606213 3437 dbSNP
rs1187551207 3447 dbSNP
rs768052532 3449 dbSNP
rs1454482994 3451 dbSNP
rs756051704 3451 dbSNP
rs772932563 3451 dbSNP
rs958245708 3451 dbSNP
rs1206498774 3454 dbSNP
rs1453838788 3456 dbSNP
rs1331724223 3459 dbSNP
rs1343535765 3464 dbSNP
rs762635236 3475 dbSNP
rs969727509 3478 dbSNP
rs1347192295 3480 dbSNP
rs1221085831 3482 dbSNP
rs1286796828 3483 dbSNP
rs1228319851 3489 dbSNP
rs775340162 3498 dbSNP
rs1316609493 3503 dbSNP
rs1024945321 3506 dbSNP
rs1216584297 3506 dbSNP
rs992553172 3507 dbSNP
rs1222429922 3508 dbSNP
rs1031647879 3512 dbSNP
rs1269968460 3525 dbSNP
rs771417738 3526 dbSNP
rs182898712 3527 dbSNP
rs999735908 3536 dbSNP
rs747419062 3542 dbSNP
rs1406787040 3543 dbSNP
rs1419349244 3544 dbSNP
rs1031089379 3567 dbSNP
rs150866940 3570 dbSNP
rs1423887438 3574 dbSNP
rs1303689935 3588 dbSNP
rs1367141294 3588 dbSNP
rs1000983513 3593 dbSNP
rs1445990411 3598 dbSNP
rs1372832915 3605 dbSNP
rs1011951336 3606 dbSNP
rs1311490701 3613 dbSNP
rs1357376887 3631 dbSNP
rs1245811558 3632 dbSNP
rs903987787 3639 dbSNP
rs1018474079 3642 dbSNP
rs1007115326 3645 dbSNP
rs1232716377 3653 dbSNP
rs368230138 3657 dbSNP
rs867700321 3659 dbSNP
rs777222072 3662 dbSNP
rs1458600089 3666 dbSNP
rs1367749423 3669 dbSNP
rs772583802 3675 dbSNP
rs748635175 3676 dbSNP
rs1391278829 3679 dbSNP
rs780747344 3683 dbSNP
rs941828527 3685 dbSNP
rs907718501 3686 dbSNP
rs778986820 3687 dbSNP
rs768010415 3688 dbSNP
rs757500692 3689 dbSNP
rs1488596448 3691 dbSNP
rs1293509038 3695 dbSNP
rs751836197 3696 dbSNP
rs764171341 3703 dbSNP
rs1275148154 3707 dbSNP
rs747978058 3709 dbSNP
rs755066474 3710 dbSNP
rs1294921808 3718 dbSNP
rs775512788 3719 dbSNP
rs1347543593 3726 dbSNP
rs765225471 3729 dbSNP
rs375361488 3730 dbSNP
rs1371539052 3731 dbSNP
rs762257768 3733 dbSNP
rs776492460 3740 dbSNP
rs1373068680 3742 dbSNP
rs770763349 3746 dbSNP
rs780325536 3747 dbSNP
rs747727608 3749 dbSNP
rs1196808208 3752 dbSNP
rs1490095454 3757 dbSNP
rs1275084583 3758 dbSNP
rs778556245 3759 dbSNP
rs1337297909 3763 dbSNP
rs754483882 3767 dbSNP
rs1308454435 3770 dbSNP
rs746384837 3778 dbSNP
rs1325779862 3782 dbSNP
rs1200071097 3784 dbSNP
rs909024782 3787 dbSNP
rs1460646625 3791 dbSNP
rs190662204 3802 dbSNP
rs778512341 3808 dbSNP
rs942742684 3808 dbSNP
rs1331279005 3812 dbSNP
rs1244496712 3813 dbSNP
rs1463217284 3820 dbSNP
rs911268873 3834 dbSNP
rs1266638918 3835 dbSNP
rs1419896082 3838 dbSNP
rs750179371 3843 dbSNP
rs1335900469 3852 dbSNP
rs1174086091 3860 dbSNP
rs1404145233 3866 dbSNP
rs1469530377 3867 dbSNP
rs989599962 3869 dbSNP
rs767244422 3870 dbSNP
rs1227082032 3883 dbSNP
rs1031177720 3905 dbSNP
rs978308618 3916 dbSNP
rs1437558297 3917 dbSNP
rs1261702050 3920 dbSNP
rs1322372839 3923 dbSNP
rs757149563 3931 dbSNP
rs970995448 3959 dbSNP
rs1444783983 3961 dbSNP
rs751462468 3987 dbSNP
rs1396374574 3995 dbSNP
rs5964736 3996 dbSNP
rs1428369364 4003 dbSNP
rs1469450229 4016 dbSNP
rs1404650970 4023 dbSNP
rs1419653418 4036 dbSNP
rs1404378954 4038 dbSNP
rs1399006251 4041 dbSNP
rs1169082033 4047 dbSNP
rs186202209 4050 dbSNP
rs1247098095 4064 dbSNP
rs1016402664 4066 dbSNP
rs1005969590 4068 dbSNP
rs1281719107 4069 dbSNP
rs1469229117 4079 dbSNP
rs1223674662 4084 dbSNP
rs1276237542 4113 dbSNP
rs923945621 4117 dbSNP
rs886235640 4119 dbSNP
rs1284405359 4157 dbSNP
rs1489204065 4158 dbSNP
rs1220207077 4162 dbSNP
rs1267837416 4165 dbSNP
rs1480650387 4167 dbSNP
rs775251799 4173 dbSNP
rs1047590674 4174 dbSNP
rs1220042081 4175 dbSNP
rs1321570608 4179 dbSNP
rs933221609 4181 dbSNP
rs901783386 4186 dbSNP
rs879051904 4191 dbSNP
rs1041052779 4198 dbSNP
rs942654399 4203 dbSNP
rs1158042747 4204 dbSNP
rs1408832789 4205 dbSNP
rs1422013480 4207 dbSNP
rs1301840799 4211 dbSNP
rs955608589 4214 dbSNP
rs1297198470 4222 dbSNP
rs911228517 4227 dbSNP
rs989938215 4228 dbSNP
rs994439150 4234 dbSNP
rs1237907941 4247 dbSNP
rs1369495599 4268 dbSNP
rs936804718 4279 dbSNP
rs552111233 4284 dbSNP
rs1279595335 4292 dbSNP
rs1036003952 4302 dbSNP
rs1243609965 4323 dbSNP
rs1005895628 4330 dbSNP
rs1490511577 4336 dbSNP
rs181576984 4337 dbSNP
rs978256371 4340 dbSNP
rs759284737 4358 dbSNP
rs1248207729 4359 dbSNP
rs1309766565 4367 dbSNP
rs970941672 4373 dbSNP
rs1436240351 4382 dbSNP
rs1181398018 4386 dbSNP
rs1380923102 4387 dbSNP
rs1427303837 4389 dbSNP
rs1388989243 4401 dbSNP
rs1385125700 4402 dbSNP
rs1173900408 4418 dbSNP
rs1455273281 4419 dbSNP
rs887513290 4422 dbSNP
rs1390395167 4424 dbSNP
rs1427701444 4425 dbSNP
rs1189784913 4431 dbSNP
rs189169033 4436 dbSNP
rs771598860 4438 dbSNP
rs1246925714 4439 dbSNP
rs1249360539 4439 dbSNP
rs200717985 4439 dbSNP
rs762740928 4439 dbSNP
rs773903193 4446 dbSNP
rs1338508960 4452 dbSNP
rs959257209 4468 dbSNP
rs1239006942 4481 dbSNP
rs1459291384 4483 dbSNP
rs1207880969 4490 dbSNP
rs917792218 4492 dbSNP
rs770407615 4494 dbSNP
rs1190231077 4496 dbSNP
rs1015936196 4512 dbSNP
rs1006372558 4514 dbSNP
rs1171919506 4517 dbSNP
rs748632165 4526 dbSNP
rs1360426047 4532 dbSNP
rs1401979868 4534 dbSNP
rs886228343 4547 dbSNP
rs1335429466 4549 dbSNP
rs935236797 4551 dbSNP
rs774781176 4569 dbSNP
rs1293365416 4596 dbSNP
rs1325842969 4601 dbSNP
rs923909848 4610 dbSNP
rs1026133300 4614 dbSNP
rs979414850 4626 dbSNP
rs768721707 4631 dbSNP
rs997378221 4632 dbSNP
rs911307163 4639 dbSNP
rs901696537 4642 dbSNP
rs749413716 4646 dbSNP
rs1183734083 4653 dbSNP
rs1260261122 4658 dbSNP
rs1428479497 4662 dbSNP
rs1194813448 4664 dbSNP
rs1299446034 4665 dbSNP
rs943308923 4666 dbSNP
rs1479228191 4675 dbSNP
rs748761510 4679 dbSNP
rs1359178281 4682 dbSNP
rs1467119729 4683 dbSNP
rs3810701 4687 dbSNP
rs1384135307 4703 dbSNP
rs1400562356 4706 dbSNP
rs777672656 4707 dbSNP
rs1279816129 4724 dbSNP
rs756284718 4738 dbSNP
rs924080256 4739 dbSNP
rs769789107 4752 dbSNP
rs1313070392 4758 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uagacggacucgUAGAGGAa 5'
                      ||||||| 
Target 5' -----------aAUCUCCUc 3'
 		1 - 9
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000330258.3 | 3UTR | AAUCUCCUCCCCUACCACCAUUCCCCCUCCCCUGCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
110 hsa-miR-6888-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100971 CENPQ centromere protein Q 2 4
MIRT177381 WAC WW domain containing adaptor with coiled-coil 2 4
MIRT215237 NPM1 nucleophosmin 1 2 4
MIRT264969 TMEM136 transmembrane protein 136 2 2
MIRT306298 KLHL24 kelch like family member 24 2 2
MIRT319712 UBN2 ubinuclein 2 2 2
MIRT332866 TXNIP thioredoxin interacting protein 2 2
MIRT444384 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445270 CPPED1 calcineurin like phosphoesterase domain containing 1 2 2
MIRT447185 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT448763 HDX highly divergent homeobox 2 2
MIRT451468 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT452754 U2AF2 U2 small nuclear RNA auxiliary factor 2 2 2
MIRT455325 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456846 ZNF460 zinc finger protein 460 2 2
MIRT457372 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT460352 ARL14EP ADP ribosylation factor like GTPase 14 effector protein 2 2
MIRT462004 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT462104 TMEM214 transmembrane protein 214 2 2
MIRT465309 TRAM2 translocation associated membrane protein 2 2 2
MIRT468841 RRM2 ribonucleotide reductase regulatory subunit M2 2 4
MIRT469635 RAD21 RAD21 cohesin complex component 2 6
MIRT470181 PSMD11 proteasome 26S subunit, non-ATPase 11 2 4
MIRT471782 NUP153 nucleoporin 153 2 2
MIRT472261 NFIC nuclear factor I C 2 2
MIRT473731 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT477728 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 2 2
MIRT479358 CEP97 centrosomal protein 97 2 2
MIRT481063 BASP1 brain abundant membrane attached signal protein 1 2 2
MIRT482044 AMER1 APC membrane recruitment protein 1 2 2
MIRT482892 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog 2 4
MIRT485773 B4GALT5 beta-1,4-galactosyltransferase 5 2 2
MIRT492646 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT501915 MBD4 methyl-CpG binding domain 4, DNA glycosylase 2 4
MIRT503022 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT503247 ZFP36 ZFP36 ring finger protein 2 4
MIRT504591 FAM103A1 family with sequence similarity 103 member A1 2 6
MIRT507346 FAM168A family with sequence similarity 168 member A 2 2
MIRT508274 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508414 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508956 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 2 4
MIRT514698 SOD2 superoxide dismutase 2 2 2
MIRT515837 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT516095 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT516420 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT516863 TYW5 tRNA-yW synthesizing protein 5 2 2
MIRT516940 MRRF mitochondrial ribosome recycling factor 2 2
MIRT518122 RNMTL1 mitochondrial rRNA methyltransferase 3 2 4
MIRT522745 LNPEP leucyl and cystinyl aminopeptidase 2 2
MIRT523816 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT524107 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT526722 RPS9 ribosomal protein S9 2 2
MIRT527047 ISY1-RAB43 ISY1-RAB43 readthrough 2 2
MIRT534174 SLC8A1 solute carrier family 8 member A1 2 2
MIRT537151 GJA1 gap junction protein alpha 1 2 2
MIRT544174 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT544558 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT544569 POLDIP3 DNA polymerase delta interacting protein 3 2 2
MIRT545174 SPATA18 spermatogenesis associated 18 2 2
MIRT545478 TRIM37 tripartite motif containing 37 2 2
MIRT549771 ZNF611 zinc finger protein 611 2 4
MIRT550733 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT550864 SNAP47 synaptosome associated protein 47 2 4
MIRT551297 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551325 GSG2 histone H3 associated protein kinase 2 6
MIRT552807 XIAP X-linked inhibitor of apoptosis 2 4
MIRT555345 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 4
MIRT558137 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT560877 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT561906 SMCR7L mitochondrial elongation factor 1 1 1
MIRT564414 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT568716 TMEM30B transmembrane protein 30B 2 2
MIRT573284 NCAPH non-SMC condensin I complex subunit H 2 2
MIRT573685 HES6 hes family bHLH transcription factor 6 2 2
MIRT618161 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT622840 PDZD4 PDZ domain containing 4 2 2
MIRT624355 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT642273 SMIM17 small integral membrane protein 17 2 2
MIRT652967 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 2 2
MIRT666642 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT680851 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT681368 BRI3BP BRI3 binding protein 2 2
MIRT681551 ZNF738 zinc finger protein 738 2 2
MIRT681667 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT681808 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681955 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682192 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682249 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682396 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT685160 DTWD2 DTW domain containing 2 2 2
MIRT687030 RNF24 ring finger protein 24 2 2
MIRT688377 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT690383 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT691949 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT693036 MB21D1 Mab-21 domain containing 1 2 2
MIRT693110 SCNM1 sodium channel modifier 1 2 2
MIRT694481 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694898 ZNF417 zinc finger protein 417 2 2
MIRT696667 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT698663 TERF2 telomeric repeat binding factor 2 2 2
MIRT700157 RNF115 ring finger protein 115 2 2
MIRT700984 PDE4D phosphodiesterase 4D 2 2
MIRT702139 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702207 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702496 KIAA1328 KIAA1328 2 2
MIRT704932 CCDC36 coiled-coil domain containing 36 2 2
MIRT705778 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT707795 TTYH3 tweety family member 3 2 2
MIRT711479 MYH15 myosin heavy chain 15 2 2
MIRT713188 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6888-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6888-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)

Error report submission