miRTarBase - #MIRT482107


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pre-miRNA Information
pre-miRNA hsa-mir-4781   
Genomic Coordinates chr1: 54054079 - 54054154
Description Homo sapiens miR-4781 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4781-3p
Sequence 46| AAUGUUGGAAUCCUCGCUAGAG |67
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs968609764 2 dbSNP
rs899910686 3 dbSNP
rs74085143 4 dbSNP
rs550946107 8 dbSNP
rs747064911 10 dbSNP
rs1352517651 13 dbSNP
rs1436072914 22 dbSNP
Putative Targets

Gene Information
Gene Symbol AKT3   
Synonyms MPPH, MPPH2, PKB-GAMMA, PKBG, PRKBG, RAC-PK-gamma, RAC-gamma, STK-2
Description AKT serine/threonine kinase 3
Transcript NM_005465   
Other Transcripts NM_181690   
Expression
Putative miRNA Targets on AKT3
3'UTR of AKT3
(miRNA target sites are highlighted)		 
>AKT3|NM_005465|3'UTR
   1 GTCTCTTTCATTCTGCTACTTCACTGTCATCTTCAATTTATTACTGAAAATGATTCCTGGACATCACCAGTCCTAGCTCT
  81 TACACATAGCAGGGGCACCTTCCGACATCCCAGACCAGCCAAGGGTCCTCACCCCTCGCCACCTTTCACCCTCATGAAAA
 161 CACACATACACGCAAATACACTCCAGTTTTTGTTTTTGCATGAAATTGTATCTCAGTCTAAGGTCTCATGCTGTTGCTGC
 241 TACTGTCTTACTATTATAGCAACTTTAAGAAGTAATTTTCCAACCTTTGGAAGTCATGAGCCCACCATTGTTCATTTGTG
 321 CACCAATTATCATCTTTTGATCTTTTAGTTTTTCCCTCAGTGAAGGCTAAATGAGATACACTGATTCTAGGTACATTTTT
 401 TAACTTTCTAGAAGAGAAAAACTAACTAGACTAAGAAGATTTAGTTTATAAATTCAGAACAAGCAATTGTGGAAGGGTGG
 481 TGGCGTGCATATGTAAAGCACATCAGATCCGTGCGTGAAGTAGGCATATATCACTAAGCTGTGGCTGGAATTGATTAGGA
 561 AGCATTTGGTAGAAGGACTGAACAACTGTTGGGATATATATATATATATATAATTTTTTTTTTTTAAATTCCTGGTGGAT
 641 ACTGTAGAAGAAGCCCATATCACATGTGGATGTCGAGACTTCACGGGCAATCATGAGCAAGTGAACACTGTTCTACCAAG
 721 AACTGAAGGCATATGCACAGTCAAGGTCACTTAAAGGGTCTTATGAAACAATTTGAGCCAGAGAGCATCTTTCCCCTGTG
 801 CTTGGAAACCTTTTTTCCTTCTTGACATTTATCACCTCTGATGGCTGAAGAATGTAGACAGGTATAATGATACTGCTTTT
 881 CACCAAAATTTCTACACCAAGGTAAACAGGTGTTTGCCTTATTTAATTTTTTACTTTCAGTTCTACGTGAATTAGCTTTT
 961 TCTCAGATGTTGAAACTTTGAATGTCCTTTTATGATTTTGTTTATATTGCAGTAGTATTTATTTTTTAGTGATGAGAATT
1041 GTATGTCATGTTAGCAAACGCAGCTCCAACTTATATAAAATAGACTTACTGCAGTTACTTTTGACCCATGTGCAAGGATT
1121 GTACACGCTGATGAGAATCATGCACTTTTTCTCCTCTGTTAAAAAAAATGATAAGGCTCTGAAATGGAATATATTGGTTA
1201 GAATTTGGCTTTGGGAGAAGAGATGCTGCCATTTAACCCCTTGGTACTGAAAATGAGAAAATCCCCAACTATGCATGCCA
1281 AGGGGTTAATGAAACAAATAGCTGTTGACGTTTGCTCATTTAAGAATTTGAAACGTTATGATGACCTGGCAACAAAAAGT
1361 AATGAAGAAAATTGAGACCTGAGTGAAGATAAGAAATGATCTTTACGTGGCAAAATGAACACATCTTGAGTATTTAGGAA
1441 ATGGGCAGTGAAGGCTAAGAACCTGGTGTGTTTCTTGGGATCATGGTACATTTATCACTGAATTAAGCCATCAGGGAAAA
1521 AACAACAAAAAAAGAGAACACCTCCAGCTTTTCTTTTTCTGTATATACTCATGTCCCCCAGATTCCAACATTTCTCACTG
1601 AAAGGGGGCATGTATGCAAACCTCATCTTTCTCCTTCATTAATGATGATCTTCAGATTAAACCCTTTGGTGCTAGGAGCT
1681 GACAATTTCCAAAGCAGCCTGTGAAGTCCTAGGGGCTGGGGGCCACTCTTGCGGCAAGCAGAAGGCCATCCTACTCCGCG
1761 GAGTGATCATGGAAATGTATTTTAGTTAAACTCTGACAGCTCCCAAACGGAAGACTACAGCATGACGTAGTATTATGATT
1841 GCATTGTATGAAAGAGCAAGTGACTTTCTAAGTAGGATGAATCATATTCATATGCAGATGTCTTAGCCTCTTGACGCTGG
1921 AAGTGTGGATTTATAGCTATGAAACCACTGCTGGCAGTGGGTGGGCCACTGGGACTGACGGGGGTTAAAGGGCATTTTAC
2001 TAAGGCAGCTAAGACATATTCAGACATCAACGTTATCCTTCTTTTTCATATTTCTACCTGAGTGAAGTTCATCCTTAGTA
2081 TTGAGTAGGAAGTTACAGTAAATGGTAGTTCATTCTTACTTACACACATAGCTAATCTTTTTTTTTTCACTTGGAATTAT
2161 GTTGAATGTTTCATTTTGACAAAAAAGTAGACTAGAAGGTATGTTCTTTAAGTTGTCTTGCATCCATTATATAAGAAAGA
2241 AACAGGTGAGAGGAAGAGCAGAAAGCTGAGACTGGCTGATGTTCAGAGCACTTACTCCTCTAGAGGGAAAGCATGACACC
2321 GAACACTAAGCACACAGCTTTTTGTTGTTTTGGTTTTTTCTCCCGCAAATCTTAAAGTGATTCCCATGACCTTGGCCAAG
2401 GACACTTCTTAAAGATTAATGACTGGCACTGACATTGCCCCAGGCGGGCCACTCCTCACACTGGCTCTCAGTTCCCAGCC
2481 ATGCCTGGGGCTCAGTCACTTCTATTCCACCCTCTGAGACTCCATTGGTGTCACACAAGGTGTCTTCTTGGCTTTGATTT
2561 TGAGAATCCCCTATTTTCACTTCCAGATCTGTCAGCTGCCATGGAGGAATAATAGAAAACCAGAAATGCGTGTAGAGGGA
2641 GATTTCTAAAACTTCCCTTGTGTCGCCCATAGTTGTAGTTTTGGGTTCTGGCAGGTGGAACACCCTGAAACCTGGAATCA
2721 TTCTATGAGAATACAGTTCAGACTTTGCAGACTCCAGCCCATACTAACTGTCATGAAGCTTGACTTCTTGTCATAATGCA
2801 GCCATCTTGGAGGAAATTGGCCATTTCTGCTTAGATGGTTGGCAGGGTCGCGCTCAGCTTTGCTTTCTACACTAATTACA
2881 TAGCATTATTCAAGTATTGTTTTCCATTTCCCATCCCTGATTTCCAGCTTCTTAAAGCTGACTGTTCTTGCAGGGGCCAC
2961 TTGCTTCTCCTAGAGTACAAAAGTAAGGGCCTTCCTTACTAACTGCAGGGTCTCTCTATTACACCTCAACATACACACTT
3041 TGCTGCTACTGTTTGTACTGTCTACAGTAGAATTTCCTTATCTTGCTCCTGGTAGTGCATTACAGGCAAGCATGAAATGT
3121 AAAGTATTTATTTAAATAAAAAGAAAACCTCTAAATTGGTAATTGAATTACCTCCCTGTAGCTTTATAGTTTGTGACATT
3201 TCTTGACCTTGCTAGTTCTTTCATTAGATCTGCGCAAGATCTAGTCATCTGGTTAAGGATTTTAAGCAGATGCAACTATA
3281 AACCCAAGAAACTGTATTACTATTACTGTTGGTCATACTAAACCTGTCTATTTCCTGAAGTATATGACCCACAAGGATGT
3361 GGAATAACTAGGAGAAACTGTTTTTGTACACTGTACATCCTTAGTATTTTTACACGTATATGATAGGGATGAACATGATT
3441 TTCCTTCGTACAGACAGCTTAAATAAAGCACTATGTCAATCTGCTACTTCTCTGTTTATTGTTGTTGGATGTGGTTCTAT
3521 AATCCCCCCAAATTAAATCTTCTTTAATGAAAACATGATTTTTAATAGCCCCAGCTGGTATTAACCTACCTTGTATAAAA
3601 TGTGACAGGAAAATATAGAAATAATTCCTTGTAGCTCACACACACACACATAGGGGATCATTTTTACTTCAGTGAAATGG
3681 CAGTAGTGCGGTTGTGCAAACTTTGATGAACGGCTGCTTCTGAGGGGAAACGCTGACCTCTCAGCACTGGATTTAGGATG
3761 GATGTACTGTGAAGCCAGGGATGAAGGAGGTCTCAGACCCTGGGGACATTCAGACCCGAATCATCTATACAACACACGGT
3841 TTGGACCCAGAATCTGAAGGAATGTAGCTTTTCATTAACGTCTTCCTGATAATGTACTGCTCTGCATATTTCCTTTCTTA
3921 GAGTGTATTTCTAACAACATGTCATGGCAAATTAACAAACTTAGACGTGGGTGATGTAGATGGGTAGGATGGCTGGACTG
4001 CAGTCTGACTTCACGTTGAATCATTCTGGATGGGGCCTTTTTCTGATTTTACCTCATAAAGCTACTATTGTAGAAACTTG
4081 GCTTTGCTCCTGTGACGAAGCCAGACAGAGGAATGGCTTTTGGGACCAGAGTGAGTCAAGCATGTATGTGTATGTCACAC
4161 GGCCAAATTTGAGGGCATTCTCACATGTGCTCTTCTCTCAAAACCACTGGGGTTGACAGATCCAGGAGGCTAAAAAAAAG
4241 TGACCTCTATAATTCTTTAAAGGTGCTATTTTTAGAATATTGTATAATTTATTCACAGTATATCTAAAACAGAATTAAGG
4321 ACAATTAAAATATCTTATGTGACAGCCTTTATGTCTAGCACATTTGATGAAATAAAAAACTTCTGAATCTGAATAGAAGT
4401 TCTACTGTTTCAGGCTTGAACCTTTTACATGCTCAAGAGATTCAAATGGTCTCTGTGTGTAGATCATGCCACCGCCTCCA
4481 AAGCCTAATCCACATCACTTCTGAGAGGCAAGGCTGAGCATATGGTGACATCAGCTCTGTGTTGAGATGGTGATGAGGAT
4561 GATGGCTCGCTGGCCAGGCAGGGCAGCCGAAGGTCAGGGACCTGTCCTAACTAACTGCAGCCTTGCCTTTAGTGTTTGTC
4641 ATTCTCAGATACAACACGGTATGTCCAGTGTCCGTTTTTATTACTTTAAAGCATTTGAGGGCTTAATTGTGTATAGTAGA
4721 AATACTATTTTAGACAAATAATTATCTGTGTACAGATATTTGATATACTCTAAGTAAATTTTCTAATTTCACTAAGTACG
4801 TTTTTAGGCTCCTCTCAAATACTGCGTATTGAAGAAAAAAATCTGACACCACCGAGCCAAAGATGCTTTTTTGTCTGTTT
4881 TCGTTGTTTAACAGAATGGAAAGAGTAATGCATAGTGCTTCCTGGTGTCTCCTGATTGATTGATTGTGCACAAAGTAGGA
4961 CGATAAATAAATAAAATGGAGTCTGATGGGACATTGATTAAAGGTGAAGGATGATTGATATATAGATCATGAAAAGAAAA
5041 ATGAATGGCAGGAAAAAAAGTTTGGTCCTTAATATACTTTGGCCTAGTTAAAATATGTGCCTTTTTGGTGTGTTTTGTTC
5121 ATCACTACAAGATAAAAAGGAAACATTACAACTCAAGTCTTTAAAAAGTTCATTTATTGAAAATCATATGTATAACCTAG
5201 CATACGAATGAGCAGATTTAAACACATAACTTCAAGCCATTTCTGAAAACATACACCAGGAGCTCTGCTCAGCTAGAGTC
5281 AGACTCCAGCTCCAGCCCGACTGCGTGCGGGGACAGCGCCCGCGTTGATGAGGACCAGCCCCACTGCAGGCTGAGGCGGT
5361 GTCACCCTGGGAAGGTCGTGGTGCGTTGTGGCATATTAAGTCTAAACCAGATGAATGTAAATATCTCTTTGTAAATCATT
5441 TATTTCACTCTGTTCCATCCAGGTCAGCAATCAGATTGTGGCATGCTGGGTAACTGGAAAAAATAATAAAAAGTAAGTTT
5521 CAATAGCTCAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gagaucgcucCUAAGGUUGUAa 5'
                    ||||||||||| 
Target 5' atgtcccccaGATTCCAACATt 3'
 1571 - 1592 160.00 -15.00
2 
miRNA  3' gagAUCG-CUCC-U--AAGGUUGUAa 5'
             |||| |:|| |  ||||:|||| 
Target 5' acaTAGCAGGGGCACCTTCCGACATc 3'
 84 - 109 149.00 -18.10
3 
miRNA  3' gaGAUCGCUCCU-AAGGUUGUaa 5'
            :||| | | | |||:||||  
Target 5' tcTTAGAGTGTATTTCTAACAac 3'
 3916 - 3938 128.00 -11.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
387204 7 ClinVar
296922 5160 ClinVar
296921 5177 ClinVar
296920 5252 ClinVar
296919 5315 ClinVar
296918 5367 ClinVar
296917 5403 ClinVar
853144 5484 ClinVar
COSN30521347 5 COSMIC
COSN30185556 13 COSMIC
COSN31486454 22 COSMIC
COSN30148892 28 COSMIC
COSN28816008 65 COSMIC
COSN25052855 67 COSMIC
COSN31552909 86 COSMIC
COSN25539116 115 COSMIC
COSN31586428 139 COSMIC
COSN31485814 188 COSMIC
COSN21953840 408 COSMIC
COSN22423699 421 COSMIC
COSN8452850 421 COSMIC
COSN30108173 611 COSMIC
COSN25109943 674 COSMIC
COSN31591422 796 COSMIC
COSN30268237 881 COSMIC
COSN31571317 887 COSMIC
COSN31539851 909 COSMIC
COSN31544801 1039 COSMIC
COSN17327665 1071 COSMIC
COSN15660406 1187 COSMIC
COSN31571315 1222 COSMIC
COSN5202726 1239 COSMIC
COSN15894832 1261 COSMIC
COSN31543742 1310 COSMIC
COSN28664457 1335 COSMIC
COSN19656930 1503 COSMIC
COSN24297735 1575 COSMIC
COSN31541233 1617 COSMIC
COSN31528048 1715 COSMIC
COSN29166323 1732 COSMIC
COSN31578935 1755 COSMIC
COSN31521812 1786 COSMIC
COSN19446184 1827 COSMIC
COSN20096202 1853 COSMIC
COSN30543621 1942 COSMIC
COSN1440245 1958 COSMIC
COSN31516005 2032 COSMIC
COSN27363893 2137 COSMIC
COSN31535474 2178 COSMIC
COSN7213175 2217 COSMIC
COSN5369593 2525 COSMIC
COSN29094002 2905 COSMIC
COSN8452849 3067 COSMIC
COSN1440244 3411 COSMIC
COSN8452848 4763 COSMIC
COSN4749577 4933 COSMIC
COSN28870851 5318 COSMIC
COSN31502318 5330 COSMIC
COSN31560700 5347 COSMIC
COSN30712282 5356 COSMIC
COSN30751536 5399 COSMIC
COSN23177651 5411 COSMIC
COSN30104708 5415 COSMIC
COSM7094679 5493 COSMIC
COSM7094677 5500 COSMIC
COSM6062432 5505 COSMIC
COSN26965721 5509 COSMIC
COSN26392492 5514 COSMIC
COSN213389 5515 COSMIC
rs9428966 651 GWAS
rs67027895 1335 GWAS
rs34770086 1856 GWAS
rs1058305 3909 GWAS
rs14403 4658 GWAS
rs145504297 4946 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766019860 3 dbSNP
rs746704800 4 dbSNP
rs769005975 4 dbSNP
rs543291675 7 dbSNP
rs370750588 9 dbSNP
rs918344063 9 dbSNP
rs764600594 10 dbSNP
rs1184602716 15 dbSNP
rs1480409905 19 dbSNP
rs761768321 24 dbSNP
rs753649886 28 dbSNP
rs1328222784 36 dbSNP
rs763992613 40 dbSNP
rs775103000 41 dbSNP
rs192105293 44 dbSNP
rs552302039 45 dbSNP
rs1208690839 50 dbSNP
rs768201175 56 dbSNP
rs958725921 67 dbSNP
rs781391076 77 dbSNP
rs1430430535 79 dbSNP
rs114728802 85 dbSNP
rs1309249426 89 dbSNP
rs1157582039 91 dbSNP
rs1018048352 92 dbSNP
rs557020197 103 dbSNP
rs1348927637 104 dbSNP
rs1363775802 114 dbSNP
rs1407065453 115 dbSNP
rs1303918815 116 dbSNP
rs1349667269 117 dbSNP
rs1221812326 122 dbSNP
rs985366925 127 dbSNP
rs187407614 137 dbSNP
rs1323370745 138 dbSNP
rs1002951735 142 dbSNP
rs907036161 143 dbSNP
rs550667375 144 dbSNP
rs1289037896 154 dbSNP
rs1036163793 171 dbSNP
rs746726491 172 dbSNP
rs1010910652 173 dbSNP
rs1480527945 176 dbSNP
rs1175887870 186 dbSNP
rs892460681 187 dbSNP
rs1031120360 195 dbSNP
rs1005125780 207 dbSNP
rs1166300526 211 dbSNP
rs771057786 215 dbSNP
rs1004024259 218 dbSNP
rs887672158 221 dbSNP
rs1472511042 236 dbSNP
rs1409933147 237 dbSNP
rs1164478313 240 dbSNP
rs879610006 244 dbSNP
rs1049479371 251 dbSNP
rs931649369 257 dbSNP
rs1299722297 259 dbSNP
rs1373775531 267 dbSNP
rs1451824096 282 dbSNP
rs1483530974 283 dbSNP
rs1360999711 284 dbSNP
rs1246308733 290 dbSNP
rs1219603175 291 dbSNP
rs1246020085 300 dbSNP
rs1273239922 303 dbSNP
rs921638257 305 dbSNP
rs1206166205 307 dbSNP
rs370949990 318 dbSNP
rs1290258335 321 dbSNP
rs1183533663 323 dbSNP
rs1208037855 324 dbSNP
rs557784596 326 dbSNP
rs1289743139 333 dbSNP
rs1446556340 348 dbSNP
rs944407476 353 dbSNP
rs534559707 364 dbSNP
rs977591163 366 dbSNP
rs1354905388 373 dbSNP
rs183115836 376 dbSNP
rs771792175 382 dbSNP
rs1384955963 384 dbSNP
rs1453255453 391 dbSNP
rs1049081021 408 dbSNP
rs372332395 410 dbSNP
rs1272740443 412 dbSNP
rs990829608 419 dbSNP
rs1351988357 423 dbSNP
rs1326989799 425 dbSNP
rs918237068 426 dbSNP
rs1203392787 429 dbSNP
rs70961726 429 dbSNP
rs1457228187 430 dbSNP
rs1463090326 433 dbSNP
rs867294808 453 dbSNP
rs1241670369 455 dbSNP
rs45498504 461 dbSNP
rs192817317 479 dbSNP
rs188008375 480 dbSNP
rs1034346977 485 dbSNP
rs1480214049 486 dbSNP
rs1174055688 487 dbSNP
rs779300358 502 dbSNP
rs1470300742 503 dbSNP
rs1424493630 504 dbSNP
rs910947721 504 dbSNP
rs1432229994 506 dbSNP
rs971414870 510 dbSNP
rs1344525051 511 dbSNP
rs985272089 514 dbSNP
rs1015436907 515 dbSNP
rs1187684386 520 dbSNP
rs1284118021 526 dbSNP
rs368698280 528 dbSNP
rs1445380345 534 dbSNP
rs968487664 539 dbSNP
rs1463527425 545 dbSNP
rs914530273 557 dbSNP
rs1197533317 562 dbSNP
rs1209225039 564 dbSNP
rs1311117189 570 dbSNP
rs1431164052 573 dbSNP
rs1004707282 575 dbSNP
rs1275810786 577 dbSNP
rs1157951677 587 dbSNP
rs887632135 595 dbSNP
rs989128331 599 dbSNP
rs1304687815 602 dbSNP
rs1364396310 605 dbSNP
rs1402794228 606 dbSNP
rs1027570578 611 dbSNP
rs1234365727 612 dbSNP
rs1363416386 612 dbSNP
rs1252372910 613 dbSNP
rs139770173 613 dbSNP
rs956759869 613 dbSNP
rs996129952 613 dbSNP
rs900430555 614 dbSNP
rs1451999347 615 dbSNP
rs550577285 625 dbSNP
rs1159074715 626 dbSNP
rs1230943912 626 dbSNP
rs1471154019 626 dbSNP
rs182785210 626 dbSNP
rs60854028 626 dbSNP
rs758243739 629 dbSNP
rs1174042839 631 dbSNP
rs1179115228 632 dbSNP
rs1023692736 636 dbSNP
rs1365848604 637 dbSNP
rs9428966 651 dbSNP
rs1416438243 652 dbSNP
rs1042557173 657 dbSNP
rs190951746 666 dbSNP
rs888612324 669 dbSNP
rs545475704 672 dbSNP
rs1382154107 674 dbSNP
rs1048672880 675 dbSNP
rs540435625 684 dbSNP
rs1357386305 685 dbSNP
rs1195433286 693 dbSNP
rs994811235 697 dbSNP
rs1439275396 704 dbSNP
rs914763283 713 dbSNP
rs772124321 714 dbSNP
rs754164872 731 dbSNP
rs1242405445 733 dbSNP
rs1187043280 738 dbSNP
rs1482882530 742 dbSNP
rs559877618 748 dbSNP
rs1235301191 751 dbSNP
rs1184950317 752 dbSNP
rs1211585623 756 dbSNP
rs1368525657 764 dbSNP
rs1312448631 771 dbSNP
rs1165726996 773 dbSNP
rs1467968993 784 dbSNP
rs1411954534 785 dbSNP
rs990407887 795 dbSNP
rs1332667776 811 dbSNP
rs1273499520 817 dbSNP
rs1382754354 817 dbSNP
rs1225662923 822 dbSNP
rs937559398 829 dbSNP
rs1340503456 839 dbSNP
rs1300194667 843 dbSNP
rs927552543 854 dbSNP
rs981383829 870 dbSNP
rs879697511 873 dbSNP
rs765267766 896 dbSNP
rs1268584857 900 dbSNP
rs1301222379 901 dbSNP
rs543218384 902 dbSNP
rs1199078184 910 dbSNP
rs1262251902 915 dbSNP
rs186169175 933 dbSNP
rs573066313 946 dbSNP
rs983981409 947 dbSNP
rs1427347857 976 dbSNP
rs1376104293 979 dbSNP
rs1190606385 985 dbSNP
rs1215020409 985 dbSNP
rs1374396194 994 dbSNP
rs1326410896 1000 dbSNP
rs1171893688 1006 dbSNP
rs1168213352 1010 dbSNP
rs1339195749 1018 dbSNP
rs1427990594 1018 dbSNP
rs1049467029 1028 dbSNP
rs140237232 1031 dbSNP
rs61833175 1047 dbSNP
rs1170862716 1050 dbSNP
rs914377541 1053 dbSNP
rs1027869355 1059 dbSNP
rs543442802 1060 dbSNP
rs1267121935 1069 dbSNP
rs900399497 1074 dbSNP
rs1018883443 1078 dbSNP
rs1256465719 1079 dbSNP
rs796769872 1089 dbSNP
rs1202897170 1092 dbSNP
rs1485723966 1102 dbSNP
rs1250356926 1114 dbSNP
rs1263193311 1118 dbSNP
rs1202598712 1123 dbSNP
rs982118932 1126 dbSNP
rs1253512958 1127 dbSNP
rs3203274 1128 dbSNP
rs1228588040 1135 dbSNP
rs1008552448 1138 dbSNP
rs1429036789 1141 dbSNP
rs1178903910 1169 dbSNP
rs1479630285 1169 dbSNP
rs759359511 1169 dbSNP
rs1311248832 1194 dbSNP
rs749778855 1222 dbSNP
rs1362532336 1232 dbSNP
rs1023763028 1238 dbSNP
rs1012328485 1240 dbSNP
rs1343433681 1261 dbSNP
rs1406500440 1265 dbSNP
rs952883970 1275 dbSNP
rs1230478175 1276 dbSNP
rs1042135029 1279 dbSNP
rs1236778952 1282 dbSNP
rs577707263 1285 dbSNP
rs1011105298 1289 dbSNP
rs1262046948 1294 dbSNP
rs1353719665 1297 dbSNP
rs1221302749 1304 dbSNP
rs1266270724 1308 dbSNP
rs893562967 1309 dbSNP
rs1054513062 1317 dbSNP
rs1489972217 1318 dbSNP
rs937528426 1324 dbSNP
rs1268427952 1329 dbSNP
rs1419012232 1332 dbSNP
rs67027895 1335 dbSNP
rs1382313582 1339 dbSNP
rs897413467 1355 dbSNP
rs1045986906 1358 dbSNP
rs950053385 1363 dbSNP
rs1363980435 1369 dbSNP
rs1459594239 1378 dbSNP
rs1372619290 1380 dbSNP
rs1336764240 1389 dbSNP
rs534699374 1390 dbSNP
rs1389666971 1398 dbSNP
rs1309037486 1400 dbSNP
rs145484972 1401 dbSNP
rs375448036 1406 dbSNP
rs952189374 1407 dbSNP
rs1049497484 1411 dbSNP
rs920711650 1422 dbSNP
rs1221765227 1425 dbSNP
rs1266473229 1431 dbSNP
rs1480504710 1439 dbSNP
rs1176036561 1442 dbSNP
rs1240538947 1457 dbSNP
rs892863168 1465 dbSNP
rs1183089445 1467 dbSNP
rs75599485 1475 dbSNP
rs1383398391 1476 dbSNP
rs974547357 1482 dbSNP
rs1165742475 1501 dbSNP
rs76423396 1502 dbSNP
rs70961725 1503 dbSNP
rs1333325524 1506 dbSNP
rs756210255 1506 dbSNP
rs752703071 1508 dbSNP
rs767739715 1509 dbSNP
rs966393400 1522 dbSNP
rs537607617 1523 dbSNP
rs916570552 1524 dbSNP
rs1250755950 1526 dbSNP
rs1294383045 1529 dbSNP
rs1307327456 1533 dbSNP
rs1260342645 1534 dbSNP
rs990924188 1534 dbSNP
rs748569248 1536 dbSNP
rs755143860 1538 dbSNP
rs1203512432 1540 dbSNP
rs1241431182 1541 dbSNP
rs1010573607 1546 dbSNP
rs893523057 1547 dbSNP
rs1488372110 1555 dbSNP
rs765857745 1564 dbSNP
rs1263976777 1566 dbSNP
rs952923823 1573 dbSNP
rs1172579058 1574 dbSNP
rs370465013 1575 dbSNP
rs1027041337 1579 dbSNP
rs1469290486 1582 dbSNP
rs1216170036 1588 dbSNP
rs750247763 1590 dbSNP
rs115740111 1593 dbSNP
rs1448086069 1596 dbSNP
rs1287741671 1599 dbSNP
rs1359458711 1600 dbSNP
rs775629461 1601 dbSNP
rs1020320237 1610 dbSNP
rs1280494207 1626 dbSNP
rs1287863403 1627 dbSNP
rs2275521 1633 dbSNP
rs1223501911 1637 dbSNP
rs571599853 1642 dbSNP
rs1277092067 1646 dbSNP
rs1444234961 1661 dbSNP
rs889473689 1669 dbSNP
rs1241537947 1678 dbSNP
rs1352368862 1681 dbSNP
rs950315979 1683 dbSNP
rs1307999768 1684 dbSNP
rs765048740 1708 dbSNP
rs1386367714 1715 dbSNP
rs1388319009 1718 dbSNP
rs376781950 1720 dbSNP
rs1048170948 1722 dbSNP
rs1011170037 1729 dbSNP
rs1427221116 1730 dbSNP
rs1157751109 1732 dbSNP
rs529091593 1733 dbSNP
rs1461952257 1739 dbSNP
rs1387795611 1749 dbSNP
rs551610301 1750 dbSNP
rs1052835521 1753 dbSNP
rs1458389623 1754 dbSNP
rs1404683461 1756 dbSNP
rs761715712 1757 dbSNP
rs183400807 1758 dbSNP
rs907025612 1759 dbSNP
rs559552412 1760 dbSNP
rs911763765 1761 dbSNP
rs549605049 1767 dbSNP
rs1195867554 1770 dbSNP
rs1469336282 1784 dbSNP
rs1219137110 1785 dbSNP
rs763872282 1791 dbSNP
rs1264135287 1795 dbSNP
rs1490236721 1797 dbSNP
rs1268083712 1805 dbSNP
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rs760118113 1809 dbSNP
rs1261314314 1815 dbSNP
rs915805696 1821 dbSNP
rs966990985 1826 dbSNP
rs760274781 1827 dbSNP
rs920007017 1828 dbSNP
rs1010960837 1830 dbSNP
rs957750741 1834 dbSNP
rs1321999037 1836 dbSNP
rs972839248 1843 dbSNP
rs1437885496 1845 dbSNP
rs961874247 1846 dbSNP
rs1019722598 1855 dbSNP
rs34770086 1857 dbSNP
rs538216688 1857 dbSNP
rs954308013 1858 dbSNP
rs529465390 1868 dbSNP
rs1359013627 1874 dbSNP
rs557453245 1875 dbSNP
rs1291845286 1885 dbSNP
rs1001942208 1887 dbSNP
rs151083954 1890 dbSNP
rs1441422963 1892 dbSNP
rs1178734677 1894 dbSNP
rs1024387221 1897 dbSNP
rs1384013988 1908 dbSNP
rs1014440470 1915 dbSNP
rs1164628235 1918 dbSNP
rs771886035 1920 dbSNP
rs1406291507 1923 dbSNP
rs1173828067 1924 dbSNP
rs1031874058 1927 dbSNP
rs577602285 1928 dbSNP
rs1310088856 1936 dbSNP
rs1048002666 1939 dbSNP
rs1242958651 1949 dbSNP
rs1386521534 1951 dbSNP
rs1247730418 1960 dbSNP
rs113768661 1964 dbSNP
rs540642563 1970 dbSNP
rs1459040889 1973 dbSNP
rs35197966 1974 dbSNP
rs774630157 1979 dbSNP
rs899206795 1980 dbSNP
rs1039130545 1982 dbSNP
rs1440179502 1990 dbSNP
rs1368718366 2000 dbSNP
rs943401551 2002 dbSNP
rs911983788 2009 dbSNP
rs1048967642 2021 dbSNP
rs1343191990 2025 dbSNP
rs931345244 2031 dbSNP
rs531329460 2032 dbSNP
rs1235236934 2039 dbSNP
rs1405500662 2040 dbSNP
rs555005002 2044 dbSNP
rs535312241 2047 dbSNP
rs1341217197 2048 dbSNP
rs1295045969 2051 dbSNP
rs190950461 2063 dbSNP
rs564075522 2070 dbSNP
rs1319725831 2071 dbSNP
rs769595591 2072 dbSNP
rs1219229659 2077 dbSNP
rs940139371 2086 dbSNP
rs1195367631 2089 dbSNP
rs539325565 2095 dbSNP
rs1342740113 2096 dbSNP
rs1201699907 2097 dbSNP
rs912618614 2104 dbSNP
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rs1403652890 2118 dbSNP
rs954174200 2119 dbSNP
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rs1240421460 4822 dbSNP
rs941164306 4825 dbSNP
rs909680563 4826 dbSNP
rs568415808 4827 dbSNP
rs559718404 4835 dbSNP
rs1402825878 4837 dbSNP
rs1381575376 4842 dbSNP
rs1400381198 4842 dbSNP
rs1327655676 4848 dbSNP
rs1435141708 4849 dbSNP
rs953922505 4852 dbSNP
rs374751487 4853 dbSNP
rs1029596135 4854 dbSNP
rs1258132776 4861 dbSNP
rs1440090905 4866 dbSNP
rs1205041176 4876 dbSNP
rs1282301712 4877 dbSNP
rs976813735 4877 dbSNP
rs1191746044 4881 dbSNP
rs371717791 4882 dbSNP
rs1253140296 4883 dbSNP
rs955757904 4886 dbSNP
rs1200816999 4888 dbSNP
rs761918810 4890 dbSNP
rs964754653 4890 dbSNP
rs1156773557 4891 dbSNP
rs1390683768 4891 dbSNP
rs186540139 4893 dbSNP
rs1457323877 4894 dbSNP
rs1324562971 4897 dbSNP
rs1368422924 4898 dbSNP
rs1017288057 4903 dbSNP
rs1444743280 4903 dbSNP
rs1225060725 4905 dbSNP
rs1314473429 4905 dbSNP
rs1000908218 4912 dbSNP
rs1331761327 4926 dbSNP
rs1209443632 4929 dbSNP
rs967829510 4936 dbSNP
rs36095248 4944 dbSNP
rs1020674617 4945 dbSNP
rs1211835921 4946 dbSNP
rs1267843297 4947 dbSNP
rs145504297 4947 dbSNP
rs71703794 4947 dbSNP
rs749837277 4947 dbSNP
rs771514140 4947 dbSNP
rs1285942888 4950 dbSNP
rs1472874039 4958 dbSNP
rs552280426 4961 dbSNP
rs777772187 4962 dbSNP
rs1293778475 4964 dbSNP
rs1391194903 4976 dbSNP
rs554842444 4976 dbSNP
rs905086063 4978 dbSNP
rs532131586 4982 dbSNP
rs1232800839 4987 dbSNP
rs1352938480 4991 dbSNP
rs1044416309 4993 dbSNP
rs542088024 4994 dbSNP
rs1332726274 5000 dbSNP
rs1022381331 5005 dbSNP
rs1266275639 5005 dbSNP
rs1480391276 5012 dbSNP
rs1193924592 5013 dbSNP
rs887870674 5015 dbSNP
rs1483368112 5017 dbSNP
rs1294585635 5018 dbSNP
rs536202149 5020 dbSNP
rs1430133638 5025 dbSNP
rs574806824 5030 dbSNP
rs923422596 5033 dbSNP
rs1460150244 5035 dbSNP
rs1012381948 5036 dbSNP
rs1167168643 5040 dbSNP
rs377238670 5041 dbSNP
rs1372776750 5043 dbSNP
rs895373921 5043 dbSNP
rs976196104 5047 dbSNP
rs943646035 5053 dbSNP
rs1343448961 5060 dbSNP
rs1377547557 5060 dbSNP
rs556470880 5063 dbSNP
rs910759822 5063 dbSNP
rs1225485986 5066 dbSNP
rs1276554210 5067 dbSNP
rs1342645320 5070 dbSNP
rs1209819384 5086 dbSNP
rs1255341596 5090 dbSNP
rs939345420 5091 dbSNP
rs549532932 5094 dbSNP
rs1420531970 5095 dbSNP
rs544459823 5096 dbSNP
rs772404544 5097 dbSNP
rs1168378349 5099 dbSNP
rs1426421676 5107 dbSNP
rs1170063712 5115 dbSNP
rs1491114544 5116 dbSNP
rs968117933 5117 dbSNP
rs1173330810 5121 dbSNP
rs1357994843 5129 dbSNP
rs774615107 5131 dbSNP
rs1303545797 5134 dbSNP
rs747882785 5152 dbSNP
rs1432934591 5154 dbSNP
rs987878432 5156 dbSNP
rs1233302598 5157 dbSNP
rs781285113 5157 dbSNP
rs577416381 5160 dbSNP
rs1491383470 5162 dbSNP
rs1034870359 5163 dbSNP
rs1491176274 5163 dbSNP
rs941385064 5164 dbSNP
rs575251064 5165 dbSNP
rs182270139 5166 dbSNP
rs985264155 5168 dbSNP
rs1453417549 5169 dbSNP
rs879828098 5171 dbSNP
rs1057515459 5177 dbSNP
rs932531158 5180 dbSNP
rs1423473844 5184 dbSNP
rs922494824 5184 dbSNP
rs1017225402 5185 dbSNP
rs1177460803 5186 dbSNP
rs1474151091 5189 dbSNP
rs754820382 5192 dbSNP
rs1322565095 5193 dbSNP
rs751110482 5203 dbSNP
rs1216151809 5205 dbSNP
rs1485125868 5213 dbSNP
rs1006255810 5223 dbSNP
rs1369428285 5227 dbSNP
rs765775428 5228 dbSNP
rs978401873 5229 dbSNP
rs1306228365 5231 dbSNP
rs1326904871 5232 dbSNP
rs1210123519 5239 dbSNP
rs1057515485 5252 dbSNP
rs1268190431 5252 dbSNP
rs1280115832 5254 dbSNP
rs3831932 5255 dbSNP
rs1211399410 5256 dbSNP
rs758117117 5256 dbSNP
rs1192075550 5261 dbSNP
rs1407904208 5262 dbSNP
rs529869615 5263 dbSNP
rs1161540311 5268 dbSNP
rs901905596 5289 dbSNP
rs1302601533 5297 dbSNP
rs1214427076 5298 dbSNP
rs1022697911 5299 dbSNP
rs1360036631 5304 dbSNP
rs1012350839 5305 dbSNP
rs1348619916 5306 dbSNP
rs910841165 5308 dbSNP
rs561213869 5309 dbSNP
rs544501776 5312 dbSNP
rs1035671456 5313 dbSNP
rs1226067360 5314 dbSNP
rs1057515424 5315 dbSNP
rs1291591480 5317 dbSNP
rs1003761778 5318 dbSNP
rs913554173 5320 dbSNP
rs1251533365 5321 dbSNP
rs960458468 5322 dbSNP
rs987784074 5322 dbSNP
rs369944084 5323 dbSNP
rs1037009232 5324 dbSNP
rs764805387 5330 dbSNP
rs372086684 5339 dbSNP
rs1169541118 5348 dbSNP
rs562761595 5357 dbSNP
rs558774589 5358 dbSNP
rs888521002 5359 dbSNP
rs762181040 5361 dbSNP
rs577274111 5365 dbSNP
rs554190542 5367 dbSNP
rs932476961 5378 dbSNP
rs1356687860 5384 dbSNP
rs369079480 5385 dbSNP
rs1274427017 5386 dbSNP
rs1340522689 5388 dbSNP
rs1041284158 5397 dbSNP
rs887001769 5400 dbSNP
rs1253184007 5402 dbSNP
rs1057515484 5403 dbSNP
rs368945100 5403 dbSNP
rs373195978 5413 dbSNP
rs1384170638 5419 dbSNP
rs1396420857 5420 dbSNP
rs1372096004 5421 dbSNP
rs1185584029 5422 dbSNP
rs1239262973 5424 dbSNP
rs1473271068 5424 dbSNP
rs763036740 5425 dbSNP
rs779134954 5427 dbSNP
rs1370704204 5429 dbSNP
rs370202653 5429 dbSNP
rs769698229 5432 dbSNP
rs934557305 5436 dbSNP
rs748705341 5437 dbSNP
rs745346608 5446 dbSNP
rs901936599 5450 dbSNP
rs534167122 5452 dbSNP
rs574680728 5453 dbSNP
rs747348160 5457 dbSNP
rs376082705 5462 dbSNP
rs758064710 5463 dbSNP
rs1268199421 5470 dbSNP
rs1474766803 5474 dbSNP
rs750000450 5478 dbSNP
rs1489827909 5480 dbSNP
rs778917211 5481 dbSNP
rs778488043 5484 dbSNP
rs368277791 5486 dbSNP
rs1370873441 5492 dbSNP
rs1275793561 5494 dbSNP
rs756661933 5495 dbSNP
rs749233183 5504 dbSNP
rs757087091 5504 dbSNP
rs777493329 5508 dbSNP
rs1281295303 5510 dbSNP
rs1304405458 5510 dbSNP
rs753870692 5513 dbSNP
rs1350739174 5514 dbSNP
rs755938534 5519 dbSNP
rs377508562 5523 dbSNP
rs760595628 5526 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10000.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gagaucgcuccuaaGGUUGUAa 5'
                        :|||||| 
Target 5' cucucuauuacaccUCAACAUa 3'
 		2 - 23
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gagaucgcuccuaaGGUUGUAa 5'
                        :|||||| 
Target 5' cucucuauuacaccUCAACAUa 3'
 		2 - 23
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000366539.1 | 3UTR | UCUCUCUAUUACACCUCAACAUACACACUUUGCUGCUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000366539.1 | 3UTR | UCUCUCUAUUACACCUCAACAUACACACUUUGCUGCUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
204 hsa-miR-4781-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071728 CCNK cyclin K 2 2
MIRT184858 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT205881 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT218699 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2 2
MIRT223783 OXR1 oxidation resistance 1 2 2
MIRT242435 GAN gigaxonin 2 2
MIRT306825 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT334170 CCND1 cyclin D1 2 6
MIRT339617 TMPO thymopoietin 2 2
MIRT400371 C2ORF68 chromosome 2 open reading frame 68 2 2
MIRT445533 KIF1B kinesin family member 1B 2 4
MIRT450273 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450701 RORA RAR related orphan receptor A 2 2
MIRT451160 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT453775 NUCB1 nucleobindin 1 2 10
MIRT453884 IFRD1 interferon related developmental regulator 1 2 12
MIRT454238 OSBPL10 oxysterol binding protein like 10 2 9
MIRT458661 PAGR1 PAXIP1 associated glutamate rich protein 1 2 12
MIRT466948 STAU1 staufen double-stranded RNA binding protein 1 2 2
MIRT470278 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT471144 PHF19 PHD finger protein 19 2 2
MIRT471873 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT476739 FOXN2 forkhead box N2 2 2
MIRT480453 C16orf72 chromosome 16 open reading frame 72 2 6
MIRT482107 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483374 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT484063 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT496329 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT498659 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 4
MIRT498711 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499322 ZNF485 zinc finger protein 485 2 6
MIRT499711 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499767 CIRH1A UTP4, small subunit processome component 2 6
MIRT499912 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 8
MIRT504946 ZSWIM6 zinc finger SWIM-type containing 6 2 4
MIRT505377 TMEM154 transmembrane protein 154 2 4
MIRT508778 GSG1 germ cell associated 1 2 2
MIRT509793 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT512421 LAYN layilin 2 4
MIRT513321 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT513592 DCTN6 dynactin subunit 6 2 2
MIRT514785 RBM4B RNA binding motif protein 4B 2 2
MIRT514859 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515122 LMOD3 leiomodin 3 2 2
MIRT515271 CSNK1E casein kinase 1 epsilon 2 2
MIRT515594 FBXL13 F-box and leucine rich repeat protein 13 2 2
MIRT515880 PLXDC2 plexin domain containing 2 2 2
MIRT515908 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT515960 C9orf156 tRNA methyltransferase O 2 2
MIRT517210 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517330 ZNF347 zinc finger protein 347 2 2
MIRT517480 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517594 ZNF579 zinc finger protein 579 2 4
MIRT517676 TRIM72 tripartite motif containing 72 2 2
MIRT518215 TRMT10B tRNA methyltransferase 10B 2 2
MIRT518583 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT518777 ZFP14 ZFP14 zinc finger protein 2 2
MIRT519094 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 4
MIRT519112 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT519400 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519446 GLA galactosidase alpha 2 2
MIRT519476 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT519711 ZNF584 zinc finger protein 584 2 4
MIRT521409 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT521522 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT522652 MANEAL mannosidase endo-alpha like 2 2
MIRT523505 GMPS guanine monophosphate synthase 2 4
MIRT523795 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT524062 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524136 DMXL1 Dmx like 1 2 2
MIRT524192 DENND4C DENN domain containing 4C 2 4
MIRT525925 KIAA0391 KIAA0391 2 2
MIRT528021 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT528685 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT528769 CD1D CD1d molecule 2 2
MIRT529373 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529469 ZNF546 zinc finger protein 546 2 2
MIRT529641 ZNF621 zinc finger protein 621 2 2
MIRT530681 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT530752 GPR82 G protein-coupled receptor 82 2 2
MIRT531628 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT531649 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT532179 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT532219 CCDC117 coiled-coil domain containing 117 2 2
MIRT534238 SLC25A16 solute carrier family 25 member 16 2 4
MIRT539952 SLC30A5 solute carrier family 30 member 5 2 2
MIRT540179 MB21D1 Mab-21 domain containing 1 2 2
MIRT540466 ZNF71 zinc finger protein 71 2 2
MIRT540560 PPIC peptidylprolyl isomerase C 2 2
MIRT543265 ZNF662 zinc finger protein 662 2 2
MIRT543596 KIAA1549 KIAA1549 2 2
MIRT543971 RNF20 ring finger protein 20 2 2
MIRT544053 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544605 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT544679 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT547627 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT550668 TRAF1 TNF receptor associated factor 1 2 2
MIRT551533 EMB embigin 2 2
MIRT552443 ZNF449 zinc finger protein 449 2 2
MIRT559265 BAG4 BCL2 associated athanogene 4 2 4
MIRT562479 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT564211 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT565973 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT570524 SHH sonic hedgehog 2 2
MIRT575307 Osbpl10 oxysterol binding protein-like 10 2 6
MIRT618212 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT620115 HARBI1 harbinger transposase derived 1 2 2
MIRT624062 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT626083 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT629868 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630750 COG6 component of oligomeric golgi complex 6 2 2
MIRT631002 ZNF573 zinc finger protein 573 2 2
MIRT631100 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631290 SGSM1 small G protein signaling modulator 1 2 2
MIRT631337 CD300E CD300e molecule 2 2
MIRT631532 MYO6 myosin VI 2 2
MIRT631644 WDR91 WD repeat domain 91 2 4
MIRT632788 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633282 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633593 ABRACL ABRA C-terminal like 2 2
MIRT634074 PLIN3 perilipin 3 2 2
MIRT634163 YME1L1 YME1 like 1 ATPase 2 2
MIRT634257 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634679 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT638384 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638687 GCLM glutamate-cysteine ligase modifier subunit 2 2
MIRT640311 PRR13 proline rich 13 2 2
MIRT641132 NPHP3 nephrocystin 3 2 2
MIRT642315 FPR1 formyl peptide receptor 1 2 2
MIRT643703 KIAA0586 KIAA0586 2 2
MIRT644322 NFKBID NFKB inhibitor delta 2 2
MIRT645741 POLR3A RNA polymerase III subunit A 2 2
MIRT646975 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 2
MIRT648064 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648536 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT649294 NEK8 NIMA related kinase 8 2 2
MIRT650014 KLB klotho beta 2 2
MIRT650551 YIPF4 Yip1 domain family member 4 2 2
MIRT651796 UTP6 UTP6, small subunit processome component 2 2
MIRT652647 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653548 SLC38A7 solute carrier family 38 member 7 2 2
MIRT653895 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT655470 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT657764 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT659118 DENND6A DENN domain containing 6A 2 2
MIRT659377 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659836 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT659954 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT660258 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT663268 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT663766 ZNF285 zinc finger protein 285 2 2
MIRT666198 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT669763 ZNF101 zinc finger protein 101 2 4
MIRT669933 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT670007 GPR156 G protein-coupled receptor 156 2 4
MIRT670465 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670868 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671313 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671959 SPPL3 signal peptide peptidase like 3 2 2
MIRT672281 SHE Src homology 2 domain containing E 2 2
MIRT673654 CYCS cytochrome c, somatic 2 2
MIRT674063 ATXN3 ataxin 3 2 2
MIRT674423 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT674438 MIOX myo-inositol oxygenase 2 4
MIRT674483 BCL2L15 BCL2 like 15 2 2
MIRT675478 NUBPL nucleotide binding protein like 2 2
MIRT675648 TTPAL alpha tocopherol transfer protein like 2 2
MIRT675981 FAM126B family with sequence similarity 126 member B 2 2
MIRT676251 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT677652 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT682718 KIAA1456 KIAA1456 2 2
MIRT687545 MOB1B MOB kinase activator 1B 2 2
MIRT689620 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690035 CCDC90B coiled-coil domain containing 90B 2 2
MIRT691449 CXorf36 chromosome X open reading frame 36 2 2
MIRT691549 FLYWCH2 FLYWCH family member 2 2 2
MIRT691737 LARS leucyl-tRNA synthetase 2 2
MIRT692638 SUSD1 sushi domain containing 1 2 2
MIRT693866 IYD iodotyrosine deiodinase 2 2
MIRT693979 ZNF70 zinc finger protein 70 2 2
MIRT694150 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT695492 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695547 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT696023 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696402 CORO7 coronin 7 2 2
MIRT703028 HEATR5A HEAT repeat containing 5A 2 2
MIRT703559 FKBP14 FK506 binding protein 14 2 2
MIRT705036 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT705120 C4orf29 abhydrolase domain containing 18 2 2
MIRT706611 CYB5B cytochrome b5 type B 2 2
MIRT706635 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706730 RFK riboflavin kinase 2 2
MIRT706868 MAFF MAF bZIP transcription factor F 2 2
MIRT707020 RRP36 ribosomal RNA processing 36 2 2
MIRT707036 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707125 ZNF154 zinc finger protein 154 2 2
MIRT707390 SLC35F6 solute carrier family 35 member F6 2 2
MIRT708664 LYRM7 LYR motif containing 7 2 2
MIRT713010 BBX BBX, HMG-box containing 2 2
MIRT717314 TRAF3IP1 TRAF3 interacting protein 1 2 2
MIRT721912 C6orf201 chromosome 6 open reading frame 201 2 2
MIRT723050 YTHDC1 YTH domain containing 1 2 2
MIRT725038 NDUFAF7 NADH:ubiquinone oxidoreductase complex assembly factor 7 2 2
MIRT755316 SMAD5 SMAD family member 5 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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