pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF74   
Synonyms COS52, ZFP520, ZNF520, hZNF7
Description zinc finger protein 74
Transcript NM_003426   
Expression
Putative miRNA Targets on ZNF74
3'UTR of ZNF74
(miRNA target sites are highlighted)
>ZNF74|NM_003426|3'UTR
   1 CATGATGTGCTTTGGTGTCAGTAGCTGCTTTCTGAGCTACTCAACAAGGAAAGCACCCTGGTCCTCCCTGGCTCCTAGAT
  81 CCAGACCACCTTCCTCCAGGTGTGGGAGCCTTGCCTTATCACCCCCATCAGGTCTGCATGCCAGGGTGCCTCCTCTAGTT
 161 AAAGTCAGTCACCTCCCCAGAAGGGCCACACTCCAGGAGGAGTGTTGAGAGTCATTTGAGGTAGTCTTGCCACCTGTTTT
 241 CCTTGATGGGCCTGGAAGTTGTTGACAAGGGGAAAGATCTTTCTTGCCAATAAAAAGAAGGGATATCGTTGGGTGCCATG
 321 GCTCACACCTGTAATCTTAACACTGTGGGAGGCCAAGGCAAGGGGATCACTTGAGCCCAGGAGTCTAGGACCAGCCTGGA
 401 CAACATGGTGAGACCTCGTCTCTACAAAAAATGCAAAAATTAGCCAGATGTGGCGGCATGTCCCTGTGGTCCCAGCTACT
 481 CAGGAGGCTGAGGTGGGAGGATCATTTGAGCCTAGGAGGTCAAGGCTGCAGTGAGCCATGATTCACAGCACTGCACTGCA
 561 GCCTGGGTGACAAAGCAAGACCCTGTGTGAAATTAAAAGGAGGTATATCAACTGTTGTATCCTCGGACGGGCTCCTGACA
 641 CGGCTTTAATCAGGAGTTTCCTCCATAAACTATTATTTTCAGAATAATAATAAAACAAGAATTATGACTAGCATCACTTT
 721 CCAGTGAACATTATTATATTGCTAGAGAGGAGAATAATCTTGGGTGGTGGGCATTTGGAAAAAGTGAATTTCCTGGACTT
 801 AACTCATGTAAATAGCTCTACTGCAGAGCTGTGTGTTTAGTGACAGTGCAGTCAGGGGCATTCCCACAGCTGTCACAGCA
 881 CGGCCCAGCATCATTGTAGCCAGATCCTAACATGCCAACATCACCTCTTGCCATTTAGCCCCTAGTGAGAAATTGGGAGC
 961 TACCAGGCAGGTGCCCAGTGCATTCAGGGAAGATGGGCACAACATCAGGATGGGTGTGTCTGGAAGCTCCTCTTCACTGA
1041 CCAGGGCTGGGCAGGGCCACCCTGGGCTGGTGAGGCTGCCCTGCAGGGCTTCTCACTATGTAGCACCAGTCACCAGCCCA
1121 GGTCACAGAAGAAGCCCCTCCCAGCACCCACTGGAGAGGGGAAGCTGAAGCCCAGGGAGACGGGCTCCATGGTGGTCCCA
1201 CATGGAGCTGTTTTGCAAACCCTGGAAAAGGCGGCTCTCCCTGTCCCAACACTCTTCAGAGACAGGAAGACAGAGTTAAT
1281 CTTGAATGAATGTTATTTCTACTTAGTCCTAAGCAAGAATAAGCTGCCCTCTTGGTGATCATACTTTATACGGAGTGCTA
1361 TCGTTTATGAAATGCTTTCAGTATGCTTTTTAAATTATGCAGGCAAAATAACCACACTTCAGAAAATGTGGACTTCTGAA
1441 AAATAAAATCCCCATAATTCTTAATAAAACTGCCTTTTGCACTTTGATACATTACAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agAUUUAGAGU-AUC-ACGGAAGa 5'
            | ::| ||| ||| |||:||| 
Target 5' ctTTGGTGTCAGTAGCTGCTTTCt 3'
10 - 33 144.00 -12.90
2
miRNA  3' agAUUUAGAG-UA---UCACGGAAGa 5'
            ||| |||: ||   | ||||||: 
Target 5' caTAATTCTTAATAAAACTGCCTTTt 3'
1453 - 1478 144.00 -8.80
3
miRNA  3' agauuUAG--AGUA--UCACGGAAGa 5'
               |||  |:||  | |||:||| 
Target 5' gtgctATCGTTTATGAAATGCTTTCa 3'
1355 - 1380 137.00 -10.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32074538 67 COSMIC
COSN25440667 267 COSMIC
COSN23424532 588 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs779753219 4 dbSNP
rs748839663 7 dbSNP
rs371020054 11 dbSNP
rs1287040271 12 dbSNP
rs1478885547 18 dbSNP
rs949787660 19 dbSNP
rs779491666 20 dbSNP
rs981270585 22 dbSNP
rs748398119 24 dbSNP
rs374597080 25 dbSNP
rs937314612 37 dbSNP
rs1351024815 38 dbSNP
rs1404904131 49 dbSNP
rs1351320605 58 dbSNP
rs372756462 62 dbSNP
rs893814891 69 dbSNP
rs946684392 72 dbSNP
rs1042392309 73 dbSNP
rs1472900114 75 dbSNP
rs1412786451 78 dbSNP
rs902627909 85 dbSNP
rs998261805 97 dbSNP
rs1468757721 100 dbSNP
rs1173456275 103 dbSNP
rs4014 106 dbSNP
rs1222725545 108 dbSNP
rs1464750158 112 dbSNP
rs1355193530 123 dbSNP
rs4020 127 dbSNP
rs889916699 133 dbSNP
rs1369953834 152 dbSNP
rs1299975650 153 dbSNP
rs890008665 154 dbSNP
rs1405745631 159 dbSNP
rs543244848 172 dbSNP
rs527855817 189 dbSNP
rs1283743442 195 dbSNP
rs1275093118 204 dbSNP
rs1429650934 208 dbSNP
rs1344622670 209 dbSNP
rs559844020 217 dbSNP
rs763765018 226 dbSNP
rs1259835243 234 dbSNP
rs145528305 236 dbSNP
rs1405275671 240 dbSNP
rs1019717509 243 dbSNP
rs1017577418 247 dbSNP
rs1431546822 248 dbSNP
rs965780089 251 dbSNP
rs751199152 263 dbSNP
rs1191974114 273 dbSNP
rs1203144859 289 dbSNP
rs1249289428 290 dbSNP
rs1246571158 304 dbSNP
rs1009256175 305 dbSNP
rs545416628 308 dbSNP
rs117506051 309 dbSNP
rs1255927857 313 dbSNP
rs1025252403 319 dbSNP
rs1268711675 320 dbSNP
rs968114477 332 dbSNP
rs971156155 353 dbSNP
rs1196488596 369 dbSNP
rs1227204625 371 dbSNP
rs981154439 377 dbSNP
rs1299470988 378 dbSNP
rs556429556 384 dbSNP
rs1435244101 395 dbSNP
rs1428030257 396 dbSNP
rs926537241 397 dbSNP
rs990102233 399 dbSNP
rs1467570539 406 dbSNP
rs543319205 408 dbSNP
rs959297133 414 dbSNP
rs563623019 419 dbSNP
rs992008045 422 dbSNP
rs1351666314 426 dbSNP
rs1429336700 426 dbSNP
rs1388566784 427 dbSNP
rs917743743 431 dbSNP
rs1425600429 432 dbSNP
rs1255960007 433 dbSNP
rs1180590427 439 dbSNP
rs750252847 440 dbSNP
rs914497188 448 dbSNP
rs1203823982 451 dbSNP
rs529008552 455 dbSNP
rs117877445 456 dbSNP
rs919973854 470 dbSNP
rs931312787 477 dbSNP
rs1362519742 479 dbSNP
rs1310368277 492 dbSNP
rs1397713407 496 dbSNP
rs1213884549 501 dbSNP
rs1049709224 502 dbSNP
rs890052964 504 dbSNP
rs780007273 511 dbSNP
rs1409293905 512 dbSNP
rs1008404803 517 dbSNP
rs1041223319 521 dbSNP
rs565430325 522 dbSNP
rs528220986 532 dbSNP
rs1368247727 534 dbSNP
rs1163189957 538 dbSNP
rs1426010983 539 dbSNP
rs1290513119 544 dbSNP
rs1415159179 549 dbSNP
rs1051145037 550 dbSNP
rs889971485 552 dbSNP
rs550941481 554 dbSNP
rs571119957 558 dbSNP
rs1205394714 564 dbSNP
rs1219197968 566 dbSNP
rs1487994754 572 dbSNP
rs537070115 576 dbSNP
rs967786692 580 dbSNP
rs1322186013 583 dbSNP
rs1287683379 584 dbSNP
rs778981703 588 dbSNP
rs1185275779 596 dbSNP
rs1416135628 599 dbSNP
rs1392166626 601 dbSNP
rs1292077001 603 dbSNP
rs1033324004 604 dbSNP
rs1395791650 607 dbSNP
rs1159050505 608 dbSNP
rs1445243000 611 dbSNP
rs748307171 613 dbSNP
rs151182446 616 dbSNP
rs567956308 625 dbSNP
rs753034740 626 dbSNP
rs992058609 629 dbSNP
rs1264833104 630 dbSNP
rs917795944 641 dbSNP
rs887023 642 dbSNP
rs1422543487 643 dbSNP
rs970998817 645 dbSNP
rs376700872 649 dbSNP
rs149894684 652 dbSNP
rs1345540701 671 dbSNP
rs1267305158 675 dbSNP
rs13433540 680 dbSNP
rs1034031537 697 dbSNP
rs545552208 706 dbSNP
rs1239861775 710 dbSNP
rs931389305 711 dbSNP
rs1299488744 712 dbSNP
rs1050203915 714 dbSNP
rs1456103927 716 dbSNP
rs9610309 719 dbSNP
rs1313970441 726 dbSNP
rs967738115 727 dbSNP
rs1200509033 733 dbSNP
rs184187818 737 dbSNP
rs9622211 739 dbSNP
rs563397635 747 dbSNP
rs1247168525 753 dbSNP
rs923944089 754 dbSNP
rs188689290 765 dbSNP
rs1268723615 766 dbSNP
rs1051201395 767 dbSNP
rs369992304 772 dbSNP
rs1010366718 775 dbSNP
rs2266946 797 dbSNP
rs777192092 799 dbSNP
rs758393615 801 dbSNP
rs760019573 804 dbSNP
rs1319585144 811 dbSNP
rs1396012505 812 dbSNP
rs903615523 818 dbSNP
rs1173875474 823 dbSNP
rs868753228 826 dbSNP
rs1461844530 834 dbSNP
rs1183021187 839 dbSNP
rs1389170308 844 dbSNP
rs1166440843 852 dbSNP
rs898662284 857 dbSNP
rs559152036 859 dbSNP
rs1242537407 864 dbSNP
rs930231025 866 dbSNP
rs528283617 870 dbSNP
rs1254155354 879 dbSNP
rs140772114 882 dbSNP
rs551159585 883 dbSNP
rs144901111 892 dbSNP
rs961242992 895 dbSNP
rs530383111 911 dbSNP
rs1399840929 916 dbSNP
rs1156869139 917 dbSNP
rs1339237382 922 dbSNP
rs1335535942 923 dbSNP
rs1034006417 925 dbSNP
rs369067075 926 dbSNP
rs1408161796 928 dbSNP
rs1453248806 935 dbSNP
rs779666707 945 dbSNP
rs550591128 946 dbSNP
rs1419960896 961 dbSNP
rs567956975 962 dbSNP
rs1162496131 968 dbSNP
rs763630351 969 dbSNP
rs536972885 974 dbSNP
rs1190112006 977 dbSNP
rs115235585 996 dbSNP
rs1021878681 1001 dbSNP
rs985541372 1005 dbSNP
rs1439833586 1006 dbSNP
rs796640312 1017 dbSNP
rs1228109105 1023 dbSNP
rs1030227986 1030 dbSNP
rs1373069304 1031 dbSNP
rs761507426 1038 dbSNP
rs1234492364 1043 dbSNP
rs1349301682 1049 dbSNP
rs1222377598 1052 dbSNP
rs1285986565 1068 dbSNP
rs1411264394 1076 dbSNP
rs954595250 1080 dbSNP
rs1322569921 1087 dbSNP
rs911260074 1088 dbSNP
rs567036430 1089 dbSNP
rs1392735656 1091 dbSNP
rs1265574765 1093 dbSNP
rs1324929137 1095 dbSNP
rs1472248460 1109 dbSNP
rs767253973 1132 dbSNP
rs1411310859 1139 dbSNP
rs3088200 1143 dbSNP
rs558735463 1154 dbSNP
rs974146909 1158 dbSNP
rs754562466 1161 dbSNP
rs1261401341 1163 dbSNP
rs575703282 1164 dbSNP
rs12628313 1166 dbSNP
rs554998854 1172 dbSNP
rs930116518 1182 dbSNP
rs1232470238 1201 dbSNP
rs1373559627 1203 dbSNP
rs1273906243 1208 dbSNP
rs1025997139 1209 dbSNP
rs1469470669 1231 dbSNP
rs1175309585 1233 dbSNP
rs946275764 1234 dbSNP
rs1431128621 1238 dbSNP
rs1326411639 1244 dbSNP
rs907494082 1252 dbSNP
rs1386363315 1253 dbSNP
rs1156979465 1264 dbSNP
rs1470295952 1268 dbSNP
rs938928045 1272 dbSNP
rs766141264 1276 dbSNP
rs1190798472 1283 dbSNP
rs1043648896 1284 dbSNP
rs1477200290 1303 dbSNP
rs1175615487 1309 dbSNP
rs1055906406 1313 dbSNP
rs753755244 1318 dbSNP
rs904674328 1319 dbSNP
rs1266817218 1329 dbSNP
rs936457586 1330 dbSNP
rs1217250010 1336 dbSNP
rs1329152116 1340 dbSNP
rs1277353656 1341 dbSNP
rs1334764227 1349 dbSNP
rs1217114104 1352 dbSNP
rs1439530675 1353 dbSNP
rs1349611726 1361 dbSNP
rs1054874229 1363 dbSNP
rs573579475 1364 dbSNP
rs894864168 1370 dbSNP
rs1011747972 1374 dbSNP
rs1021343118 1376 dbSNP
rs1346523111 1380 dbSNP
rs1345855234 1393 dbSNP
rs1175521489 1404 dbSNP
rs1013261904 1413 dbSNP
rs1174614202 1426 dbSNP
rs1449265367 1429 dbSNP
rs190721315 1434 dbSNP
rs1188775440 1444 dbSNP
rs998713563 1445 dbSNP
rs1030159480 1447 dbSNP
rs1024621684 1451 dbSNP
rs1281871193 1465 dbSNP
rs754918194 1469 dbSNP
rs954646145 1476 dbSNP
rs897086457 1483 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 7625.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462573. RNA binding protein: AGO2. Condition:TZM-bl BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000357502.5 | 3UTR | cuucaccuggagcacca
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000357502.5 | 3UTR | ccuucaccuggagcacca
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000357502.5 | 3UTR | ccuucaccuggagcacca
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000357502.5 | 3UTR | ccuucaccuggagcacca
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1462573
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl BaL
Location of target site ENST00000357502.5 | 3UTR | cuucaccuggagcacca
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

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