miRTarBase - #MIRT483726


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pre-miRNA Information
pre-miRNA hsa-mir-3180-1   
Genomic Coordinates chr16: 14911220 - 14911313
Description Homo sapiens miR-3180-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3180-2   
Genomic Coordinates chr16: 16309879 - 16309966
Description Homo sapiens miR-3180-2 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3180-3   
Genomic Coordinates chr16: 18402178 - 18402271
Description Homo sapiens miR-3180-3 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3180-3p
Sequence 62| UGGGGCGGAGCUUCCGGAGGCC |83
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol THSD4   
Synonyms ADAMTSL-6, ADAMTSL6, FVSY9334, PRO34005
Description thrombospondin type 1 domain containing 4
Transcript NM_024817   
Expression
Putative miRNA Targets on THSD4
3'UTR of THSD4
(miRNA target sites are highlighted)		 
>THSD4|NM_024817|3'UTR
   1 CACTCCTGCACCCCCATCAGTAGGGCAGCATCACTGCCTTCCCGGGGGCTTCAGCAGTGCGCCTGGCTGGCTGCTGCTCC
  81 ACCACGGGCCCCCTGGCCCAGGCGCTGCCAACCAACTTAGTCACCACCCCTGCCTCCGGTGAATGCACCCCGTGGTACCC
 161 AGGGGCTTTTTACACAAGATGTTTGAAAGCCACAGTCAGTCCTTTAAGCATCACCATGTACTGATGATCCCCTCCTTGGA
 241 CCTGGCATCTGCTAATGGTGCCCTTTGAAAGTCAAGCAGTGGGAAGTACATGGAGCTCTCAGCCCTGCTCCCATCTGGCA
 321 CCTTCAAGTCAGCAGATGGGCCACTGACTGAGCACTGCCCCGTCCCTGGTGCTACTGGTCTTTCTAAACTTAGCACCCTG
 401 GAGAGTCCAAGGAGGCAGCGCCCCCAACCCAGCGCCCCACTAAGCCTTGCTGACACGCGTGCATCCCTCTGTGACCTCAG
 481 CCCAGATGTGCCTGTTTTCATTCTCAAAGACATTAGACTGTTTTCCTGCCCTATGACACAGATAGCTCACATGAATATTG
 561 TGCTTTATTTAGCAGGTGTACTCACAGATACTAGCTCCTTAGCAGCTCACAACATCCCAGAATGGGAGGCAGGGGGTGAC
 641 TCATTATCCCCATTTTACTGACAGGGAAACTGAGGCTCAACTTAAGTAATTGACCTGCCAGGTATATTCACCCATCCAGT
 721 GGAAGAGCTGAGTCCCCGCCCCAGTCATCTACCAGTATCCAGCCTGGGGCCTGTACTTAGATGTGAAAGGTGCTGCTTCA
 801 TTTCTGACCAAGAGACTGAGAAGTTTCCCAGAATGCAAACAAAGCCCAGGCCCCTGAAATCTTTCCGGTCAAGCCTTTAT
 881 CCCAGCACTCAGTTGTTTTGGATGTCTGTTCCTACTTGCCCTTACCCCCAAAGTTACAGATCCTAGTTACAGGACTCTGC
 961 CAGCTTTGTTAAACTGTCCGTGAGACAAGAAAGCCATTGGGGAAACCAGGTGATTGCCTGAAATTCTTACTCCGTTCCAA
1041 GTGCTGTTCCTCCCAGGAAATCAAAGGCCAGGGTCCTTATGGCCGTGGAGCCTTCCCGACCACAGAGCCAACTTGTGAAG
1121 CACACAGCTCTGCAGCCTGGGCTCTGCCCTGCCTCAGCCGCCTCCCCCACGCTCTTCACCACGTTCCTGGAGAGTCCGGC
1201 CAACCTGTCCCAGCCGAAACACTGCTGTATTAGAAAAAGTCTCTTTCTGGTCTTTCTGGTTTTGTTTATGAATTTCCCTC
1281 TGTGGCCACAAATTCCTCCCCTCCCCCATGACTCACAGTCCATATGGCCCACCCCCAGACTTGAGCACCAAGCTCTGCAT
1361 TAATGCAGTTGGCCTGCGACAAGGAGCTGTGGACCCTTCCCCATCTCTTCCAATTCACTTTCCCCAACTATCCAGTTCCA
1441 GAGGCCGCAGGCCTGGAAGGATGCAGTGCATATTGAAAGGTGGACCCTCTGAAAACAGTTAAGAGGAATATATGTATGTT
1521 TTACCCATTAAGAAAAAATGGCAAGCTAAACAAATGTTAAACTTACAGAAAATTTGTCTTATGGTCCTGAGCATATTTCC
1601 CTTTTAGAGCAAGCCTGGATTCTTAGCAAAGTGTTTCCCCCATTTGCTCTTTTAGCTGACAAATCTGCCACTGTGATGAT
1681 GGTTTGCAGCTTTTGGAAGCAGTATGGCAACCTGGCCTGACATGCTCTTTAGGCTTCCACTAACCTGGGGCTTTCAGAAA
1761 TTCTATTTGGCCTTTCTGTGGGTAGCTTTCCAGCTTCTCTTCTAGGGAGCCCCAGGCATCATTTCCCAAAAGCATCCCCA
1841 TCTCCTGATTCTCTTGGAACTCCTACAGATAAGCATCCTGGCAGAGGCCCAGGCTCCCAAACCGACAAAGTGAAAAGAGA
1921 CCAGAGAGGCCAAGCATATTGACTGGTGCTGTTCAGGGCCTGCTCTTTTCCACTCACCACTTGTTTTGCTGCTTGTCACG
2001 AGGAGAGTTGTTCCTGTATGTGGCTGCTCTCAGATCTTTCCAAGCAAGCCAGTCATTTGAAGAGGTTTTCTTTTCATGCT
2081 GGAGGGCAGGCTAAGATCAATGAGTGGAAGAGAGAAAGGCTGTTTTAGCTCAAGTTAAAGGAACACCTTCTAGCCATCAA
2161 AGCCGCCCAACAGAGGCAAGGGCCACCACACATGAGAGAGCGCTCTGTCCTTAAAGGGAATTCTCTGTTGAGTGGGAGGT
2241 GAACACCCTGGTTCTTCCAACTCAGGAATTCTCGTGGCTGGGCTGGGTCAGTGATGGCTTTGTCTCTTTATGTCTAAAGT
2321 GCCCTATGGCTGCTGAAGGTTACCTAACCATTCTTTAAAAGGAGAATGACCCTCCATGGGAATGGCCAGCCTGCCAACTG
2401 TGCAATTGAAGAAGACCCGATGGATCAACCCCATGTCTCCCTTGGGGAGAAAGTGCATAAACCAGGGGTCTCTTTTTTTT
2481 TTTCAACAAACCATTGAGCTGTTCTTGGAGTTCATCTCTGGAGAGGTTATACATTATTAGAAGTTTGATTATTATTATAG
2561 TTTGATCAATTTATTTGTCTTAGAGATCCAATTTTTACTAATTCCCTAGTTTTTTATTTCAGCATCTGAATGTCTTTCTC
2641 CCTAGCACAGTGCATACAATCAGGGCCTTGGGTATTTCCAGTGATAACTTTCCTTGGAGAGGATCTAAGAAAAGCCCAGA
2721 TTTCGGTAGCCATCTCCCTCCAAATATGTCTCTTTCTGCTTTCTTAGTGCCCATTATTTCCCCCTCTCCTTTCTTCTGTC
2801 ACTGCCATCTCCTTCTTGGTCTTCCCATTGTTCTTTAACTGGCCGTAATGTGGAATTGATATTTACATTTTGATACGGTT
2881 TTTTTCTTGGCCTGTGTACGGGATTGCCTCATTTCCTGCTCTGAATTTTAAAATTAGATATTAAAGCTGTCATATGGTTT
2961 CCTCACAAAAGTCAACAAAGTCCAAACAAAAATAGTTTGCCGTTTTACTTTCATCCATTGAAAAAGGAAATTGTGCCTCT
3041 TGCAGCCTAGGCAAAGGACATTTAGTACTATCGATTCTTTCCACCCTCACGATGACTTGCGGTTCTCTCTGTAGAAAAGG
3121 GATGGCCTAAGAAATACAACTAAAAAAACAAACAAAAACACCAAAAGAAAAAAAAAAGCCATTTAAAGCCAGCCACTAGA
3201 GGGAGTCAGTTCAGTTCCGTAAAGGTATGCTCAGTGCCCGCTGCCTGCAAGCTGTTGGGGACCCCAGGGAGGGCAAGGCA
3281 GCCTGTCCCCGCCCCCAGGGAACTAGAACATGACAAGAATTCTCCGCACTGTGCCTACCTGTCCCTTTACCTTACCTCTC
3361 TGGCCCAGAGTTCTTGGAGGGTTTTTTCTTTATTTTCTTATGTACTCATCTACTTATTCTCAAAGTATTTAGCATTCAAC
3441 ACTCTTTTTGCTTTAAAAAGAATGGCCTTACAAAGGGACAGAAAAGAGAAGACACGAGCTTGGTGTATTTTCATCAAGTT
3521 ATGTGGCAGAGAAATCCAGATATTACCAGGACCTGTCTAAACAAATGTTGTGGGTTTTCTTTTCATTCGGATAGCCACTT
3601 TATAGTTGGAATATCAATTCTAATGAGGAGGAAGACATAAATATAAGTGGTAAAAAGAAACATGACTTCCCTTAAAACAG
3681 GCTGGATAATCTATATCAGCCTTGTGGGTGGAGACTAGTATTTGATCCTTGCCATATAAAACATTTTAATATGGTTTACA
3761 TGGGAAAATATCGATGGCTTCCTCACAAAATGTATGGGTGACGTGAAGTTGAAGAGCCAATGGCTTGGGTGACACGTGCT
3841 GGATCCAAAAAGATCAGGGAGACTAGAATAAAACTTGGATGTTAAAAATTCACCAGGAATCCACATAAAGTACTATATTT
3921 GGGCTAAAATGAAAAACTAAATACAAGGTGGGAGAGAGGCAAGAATTTCAGTTGACTAAGCTCAGTGTGAGTCAAAGTGG
4001 GATGGAACCATGCAAAAACAAAACCCACAGACATGCAGGCTACGTGAGGAGAAAACAGTGGTGAGGATCACATCACATTG
4081 TGTTTGCATTTGCCGGAACCATACTTTAAGAAGAAAACCGATCATCTATAATAACATCAGTTTATCAATGCCCCGTCCTG
4161 ATGAAGTGTGCAGACTCTCAGAAACAGCAGGAAGGACTTCATGAGAACCCTCAGGCTGGAGAAGGCACTAGGGCACAAGG
4241 AGAGCTCTCCTAGGACCAGGACCAAGAAGCTACAGGCAGGCACAGTTTAGCTCCTGCAGAGACCCAGCTTTTCACAAGTT
4321 GGAGCCTTCCAGAGATAGAGGGACTGTGGTAGGTGGTGACCCACCCATCACTGGAGGTGGAAGCAGAGGCCGTTTGCCAG
4401 GGATGCTGGAGAGGGGATTCAAGCATCTGGCTGGGCAACGTGATGCTCAGGGCCGTCTCCACTCAGGGCTTAGGGGAGTC
4481 TGTGAGTAGAAGAGCTTTAGGTGATTTGTTTGGTGGGGGAAGGCAAGTACACAGCTATGCACTTTCCGTTTCTGACTTTT
4561 GCCACCCTGTCAGCCATGGGGAGCCCACTGTGGGACTGAAACCCTGAGCTGAATGCGGCCTCATGTCTCAGAGAAACACT
4641 GGCAAGTTGGTCAGAGCCGCCGTCTGCATCGAGGCGTAGCTGAGCGGCAGGATGGGGGGCTGCCTGCCCAGGGTCTCTCA
4721 CCGTGGTGTAAGCAGAGCCATGGCTTGCCTAGGACCCTATAGATACCATCACTCTTTCTCAGCTCGACTGGAGTTTCTGC
4801 ACCTTTGCAGGGGCAAAGTAACTCCCTGCACCCTGAACCACCCCCCATTCCTGTTCATTTCAGCAGATAATGATGGAGGG
4881 GGGGGGTGTCCATCGTGCTGAGGGTGTGACCGCAAGAGGGTGAAAACTTCCAGCCAACTTTCTCAGTCCTTTCTCTTGCG
4961 AGAGGGAAGCCACCTGCTATACAAACTAATACCCCCTGCCTTGACCCCTTCCCCACGACTCAGTTGACAGAAGGATATAC
5041 TTTGTTATAACTTATTATTTTGTTCTCTGTAAATACAAGATGTTTATAGGAAATATGTATTCTGAACTCTATCTGCAGAA
5121 TGAGTCACTACACCAAAATAGTTCTATTATTTAGAATGTGTTAATTTTAAAGGGACCTGATAGGTATTTATTTACATATG
5201 CGATCCACATTTGTGTGAAAGCATGTGATCATACTAACCCAGCCTCCTGGAATGTCGCTGTACGATGATTGATGTCTTTT
5281 TCTCAGTCCATAGTTACAATTGTTTAGTATGCTAATCAGTCCAGTTCCCTGAGGTTTAAGATCAAATATAAATTACTCTG
5361 CTTTTCGACTCATTCAGGTAGCATTGTACCTGAACCTGATTGCTACTTTTTCATCTTAAATATTATATTTCCTCATCTAA
5441 TCTGCCTTCCCCTCATCCACAGACATTTGGAGAAGGAAATGGGAGGGTGTCTGTTATCCCTTTCTCTTTGCTTTGTCCCC
5521 GTTGTTAGACTGGCAGCGTCAGTTGCTCGGTGGGCTTGGTTAGAGCCGTGGGTGAGGCAGGTGGCTGGCGGGGACAGGGA
5601 GAGGCTGAGAGGGAAGTGGTGGCATTTACTGCTCTGACACTTCCACTGTCCCTGCTGGGGATGCTGGGGCCAAGGCCTGT
5681 GGGGCCTGTGAACTGCACAGCCAGGAGCAAGGAACCCACTAAATACTCCGTCACCTCCATGTCCCCTCTACAGTGTTAAA
5761 TTATTACATAAGCAGGTGAAAGGTAGAAGGCGAATTATGTGAGTAAATATGGTCTGTTTTCTCTTCAGCAAAAATGACTA
5841 TTTTTGTGTGTGACTAATTTATTTTTATTATTGTAAAGATACAATAAACCGGTTGAAATATCTGCTTTGTTGACAAGCGT
5921 GTGCTTTCTCTGGCCTTATTCGCGTTCTGTTCTCCTGCAAATAGCGCCCTCTAAAAAGAAGAGTCAGACAATAAACTGGT
6001 TGAAATATC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccggagGCCUUCGAGGCGGGGu 5'
                | ||: | ||||||| 
Target 5' gaagagCTGAGTCCCCGCCCCa 3'
 722 - 743 152.00 -20.10
2 
miRNA  3' ccggaggCCUUCG---A--GGCGGGGu 5'
                 || |||   |  ||||||| 
Target 5' agggcaaGGCAGCCTGTCCCCGCCCCc 3'
 3270 - 3296 145.00 -22.90
3 
miRNA  3' ccGGAGGC--CUUCGAGGCGGGGu 5'
            || |:|   :||| |:||||| 
Target 5' ggCCACTGACTGAGCACTGCCCCg 3'
 339 - 362 142.00 -27.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN22704598 32 COSMIC
COSN31959079 147 COSMIC
COSN1179728 421 COSMIC
COSN1683735 434 COSMIC
COSN23812775 607 COSMIC
COSN5756347 623 COSMIC
COSN20735768 693 COSMIC
COSN20779270 913 COSMIC
COSN20736006 940 COSMIC
COSN25285927 958 COSMIC
COSN29647160 1030 COSMIC
COSN28971422 1048 COSMIC
COSN28202043 1818 COSMIC
COSN7247896 1956 COSMIC
COSN8815779 2242 COSMIC
COSN9638521 2377 COSMIC
COSN20112228 2484 COSMIC
COSN5756348 2598 COSMIC
COSN26516890 2615 COSMIC
COSN15732943 2721 COSMIC
COSN5400529 3029 COSMIC
COSN24393219 3032 COSMIC
COSN30613666 3149 COSMIC
COSN31487100 3156 COSMIC
COSN31489703 3172 COSMIC
COSN29687411 3178 COSMIC
COSN32251745 3190 COSMIC
COSN26603744 3193 COSMIC
COSN28162404 3288 COSMIC
COSN26727613 3291 COSMIC
COSN31490965 3307 COSMIC
COSN20062409 3318 COSMIC
COSN31515482 3322 COSMIC
COSN31609045 3323 COSMIC
COSN25269886 3479 COSMIC
COSN31488913 3532 COSMIC
COSN5756349 3605 COSMIC
COSN30540114 3646 COSMIC
COSN8342050 3735 COSMIC
COSN1179729 3761 COSMIC
COSN24002896 4341 COSMIC
COSN8477407 4713 COSMIC
COSN22888145 4847 COSMIC
COSN20112233 4887 COSMIC
COSN18723719 4888 COSMIC
COSN8815780 5206 COSMIC
COSN8815781 5207 COSMIC
COSN1683736 5534 COSMIC
COSN18003510 5595 COSMIC
COSN27163344 5694 COSMIC
COSN5756351 5768 COSMIC
COSN25352693 5841 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761934848 1 dbSNP
rs1305623820 4 dbSNP
rs1344655035 7 dbSNP
rs1197711791 10 dbSNP
rs1263682156 11 dbSNP
rs1005404950 12 dbSNP
rs767506207 13 dbSNP
rs1236436258 14 dbSNP
rs1475437674 15 dbSNP
rs750590892 17 dbSNP
rs544189886 18 dbSNP
rs766678126 19 dbSNP
rs754175859 20 dbSNP
rs990269830 21 dbSNP
rs755372770 22 dbSNP
rs779348115 32 dbSNP
rs1336627086 34 dbSNP
rs200730384 38 dbSNP
rs369950925 42 dbSNP
rs199562579 44 dbSNP
rs375096591 45 dbSNP
rs775323792 48 dbSNP
rs202041876 49 dbSNP
rs938329207 51 dbSNP
rs1243192107 58 dbSNP
rs1196922421 59 dbSNP
rs536507710 61 dbSNP
rs548483869 62 dbSNP
rs1261744591 68 dbSNP
rs941884489 78 dbSNP
rs1308406976 80 dbSNP
rs1298239234 84 dbSNP
rs566878026 86 dbSNP
rs956697905 87 dbSNP
rs1315812981 88 dbSNP
rs900301300 89 dbSNP
rs932733623 92 dbSNP
rs1010203419 93 dbSNP
rs1378195721 94 dbSNP
rs891149771 94 dbSNP
rs1022563354 97 dbSNP
rs572484679 104 dbSNP
rs537446361 105 dbSNP
rs1031956252 108 dbSNP
rs1442178496 114 dbSNP
rs747967543 122 dbSNP
rs1367118742 125 dbSNP
rs1403080463 128 dbSNP
rs1253433857 129 dbSNP
rs986302794 138 dbSNP
rs1341901142 139 dbSNP
rs1292695251 140 dbSNP
rs555782963 142 dbSNP
rs963762643 145 dbSNP
rs1314512832 146 dbSNP
rs1011745273 149 dbSNP
rs976473926 152 dbSNP
rs922238876 153 dbSNP
rs929658287 155 dbSNP
rs577650488 160 dbSNP
rs1021761422 161 dbSNP
rs1365978058 162 dbSNP
rs769630517 177 dbSNP
rs538755129 181 dbSNP
rs970177397 189 dbSNP
rs553658530 190 dbSNP
rs1239964938 191 dbSNP
rs1181976395 204 dbSNP
rs909783486 208 dbSNP
rs1361926154 210 dbSNP
rs1253199546 216 dbSNP
rs190900355 221 dbSNP
rs1482903273 224 dbSNP
rs368739730 226 dbSNP
rs1270084467 237 dbSNP
rs1224971806 245 dbSNP
rs1044900383 246 dbSNP
rs1239943642 247 dbSNP
rs1318820556 265 dbSNP
rs905028142 283 dbSNP
rs1390771859 289 dbSNP
rs3825804 293 dbSNP
rs182753205 294 dbSNP
rs892447274 295 dbSNP
rs1438844023 301 dbSNP
rs1184030203 311 dbSNP
rs1158788329 313 dbSNP
rs554811086 314 dbSNP
rs1361579986 327 dbSNP
rs116274334 328 dbSNP
rs373783896 332 dbSNP
rs921779116 342 dbSNP
rs1022746109 354 dbSNP
rs4777456 355 dbSNP
rs1419537204 359 dbSNP
rs78526880 363 dbSNP
rs1333949081 376 dbSNP
rs1205960376 377 dbSNP
rs1266861911 377 dbSNP
rs1486861941 378 dbSNP
rs944091419 379 dbSNP
rs1053532115 380 dbSNP
rs1398813719 380 dbSNP
rs1017688898 384 dbSNP
rs1446482347 395 dbSNP
rs532470579 397 dbSNP
rs1284952867 399 dbSNP
rs186996082 405 dbSNP
rs1318512753 411 dbSNP
rs1385477857 416 dbSNP
rs140846238 420 dbSNP
rs760711314 421 dbSNP
rs1287838572 422 dbSNP
rs1340073258 424 dbSNP
rs1457167937 425 dbSNP
rs764659501 432 dbSNP
rs562879209 434 dbSNP
rs754362583 435 dbSNP
rs1194121426 444 dbSNP
rs1457296874 448 dbSNP
rs960063607 449 dbSNP
rs1208260936 453 dbSNP
rs1461828639 456 dbSNP
rs1264861365 457 dbSNP
rs982457659 458 dbSNP
rs762423524 460 dbSNP
rs1015019803 462 dbSNP
rs1229135907 464 dbSNP
rs544587055 466 dbSNP
rs1296226248 467 dbSNP
rs963014095 472 dbSNP
rs1244698884 477 dbSNP
rs192196466 480 dbSNP
rs1468731498 482 dbSNP
rs921831686 489 dbSNP
rs931835501 506 dbSNP
rs1476510684 507 dbSNP
rs1291019392 508 dbSNP
rs1371481952 519 dbSNP
rs548423676 531 dbSNP
rs570006296 541 dbSNP
rs765631240 542 dbSNP
rs1245073451 543 dbSNP
rs987706602 550 dbSNP
rs1441815929 552 dbSNP
rs1186323663 553 dbSNP
rs1197409488 558 dbSNP
rs1242408745 566 dbSNP
rs1476102349 568 dbSNP
rs1167979754 578 dbSNP
rs1246288818 593 dbSNP
rs1384316418 596 dbSNP
rs1312329198 598 dbSNP
rs1340469401 601 dbSNP
rs1330149390 604 dbSNP
rs1411945896 614 dbSNP
rs926413243 625 dbSNP
rs911689257 631 dbSNP
rs150251553 632 dbSNP
rs757272155 632 dbSNP
rs939184128 636 dbSNP
rs531811699 637 dbSNP
rs750847153 642 dbSNP
rs1161818034 643 dbSNP
rs1472426277 643 dbSNP
rs1233322592 647 dbSNP
rs758073111 649 dbSNP
rs1435817325 658 dbSNP
rs1053186206 663 dbSNP
rs1222731706 666 dbSNP
rs537384969 684 dbSNP
rs1361217836 695 dbSNP
rs1288954020 698 dbSNP
rs1227182152 700 dbSNP
rs1350778552 702 dbSNP
rs545026198 705 dbSNP
rs1394657346 712 dbSNP
rs892540549 717 dbSNP
rs913258230 718 dbSNP
rs947377186 730 dbSNP
rs549345022 738 dbSNP
rs1327302476 739 dbSNP
rs1043730474 741 dbSNP
rs903855569 744 dbSNP
rs1043323374 748 dbSNP
rs906120873 752 dbSNP
rs571244446 753 dbSNP
rs113556746 754 dbSNP
rs112711508 755 dbSNP
rs184700260 756 dbSNP
rs1057485097 758 dbSNP
rs895954432 759 dbSNP
rs553833590 764 dbSNP
rs1285790940 766 dbSNP
rs564902864 770 dbSNP
rs1225948343 772 dbSNP
rs1264938348 784 dbSNP
rs1017826676 794 dbSNP
rs963071103 809 dbSNP
rs1347797959 817 dbSNP
rs901997277 823 dbSNP
rs1436067115 825 dbSNP
rs779619054 831 dbSNP
rs565684131 835 dbSNP
rs536439590 836 dbSNP
rs1387727941 845 dbSNP
rs1191102867 846 dbSNP
rs951157996 849 dbSNP
rs1261772406 853 dbSNP
rs953421579 856 dbSNP
rs987372962 865 dbSNP
rs374932006 867 dbSNP
rs1243328395 868 dbSNP
rs866228953 870 dbSNP
rs554837555 874 dbSNP
rs150081647 875 dbSNP
rs1326053935 884 dbSNP
rs913310402 887 dbSNP
rs1218847241 893 dbSNP
rs947429541 897 dbSNP
rs980658613 900 dbSNP
rs771153264 915 dbSNP
rs926507331 919 dbSNP
rs927261863 926 dbSNP
rs939277521 929 dbSNP
rs527990111 931 dbSNP
rs562750111 938 dbSNP
rs895998489 940 dbSNP
rs1410174721 941 dbSNP
rs796880348 944 dbSNP
rs913763033 947 dbSNP
rs945441893 954 dbSNP
rs1044206932 959 dbSNP
rs1036148785 961 dbSNP
rs188656008 981 dbSNP
rs751046979 998 dbSNP
rs1275317099 1009 dbSNP
rs1355611968 1028 dbSNP
rs754509822 1034 dbSNP
rs16956188 1035 dbSNP
rs547639092 1043 dbSNP
rs1224142878 1050 dbSNP
rs953045714 1058 dbSNP
rs1009252324 1071 dbSNP
rs902092113 1075 dbSNP
rs748015341 1077 dbSNP
rs1018849983 1081 dbSNP
rs756081124 1085 dbSNP
rs577174625 1086 dbSNP
rs541121922 1096 dbSNP
rs559796881 1098 dbSNP
rs956781457 1099 dbSNP
rs530177174 1111 dbSNP
rs1026440966 1113 dbSNP
rs1157080550 1119 dbSNP
rs1181811721 1120 dbSNP
rs1481140199 1125 dbSNP
rs542006325 1134 dbSNP
rs886611796 1137 dbSNP
rs1360196189 1142 dbSNP
rs1003935069 1145 dbSNP
rs915035693 1147 dbSNP
rs200327774 1148 dbSNP
rs1017111454 1152 dbSNP
rs563568600 1153 dbSNP
rs1001856061 1156 dbSNP
rs1311861433 1160 dbSNP
rs531082202 1161 dbSNP
rs1375221051 1162 dbSNP
rs552851402 1163 dbSNP
rs960609906 1165 dbSNP
rs978784864 1169 dbSNP
rs992078402 1171 dbSNP
rs1304588258 1172 dbSNP
rs913701279 1176 dbSNP
rs1378751075 1183 dbSNP
rs927303047 1184 dbSNP
rs36015014 1189 dbSNP
rs1420255004 1197 dbSNP
rs1308053790 1198 dbSNP
rs571116684 1199 dbSNP
rs532130141 1204 dbSNP
rs925342772 1207 dbSNP
rs1487882812 1208 dbSNP
rs1209699607 1210 dbSNP
rs1251959392 1214 dbSNP
rs7402189 1217 dbSNP
rs565752159 1229 dbSNP
rs1331213523 1234 dbSNP
rs1379883440 1239 dbSNP
rs1036535876 1240 dbSNP
rs193131509 1246 dbSNP
rs1227487719 1249 dbSNP
rs933538262 1259 dbSNP
rs1284760565 1260 dbSNP
rs775644180 1273 dbSNP
rs930393910 1285 dbSNP
rs1050149326 1286 dbSNP
rs774994826 1288 dbSNP
rs34544190 1293 dbSNP
rs1457473327 1299 dbSNP
rs1454755674 1300 dbSNP
rs1391379998 1308 dbSNP
rs888808239 1309 dbSNP
rs1472442415 1310 dbSNP
rs747099316 1313 dbSNP
rs1008555817 1314 dbSNP
rs1019318090 1324 dbSNP
rs1404747535 1326 dbSNP
rs1266746793 1338 dbSNP
rs1402446478 1339 dbSNP
rs1266105624 1342 dbSNP
rs1047977439 1350 dbSNP
rs892384806 1373 dbSNP
rs1323948680 1378 dbSNP
rs554774220 1379 dbSNP
rs1009403591 1384 dbSNP
rs886583394 1386 dbSNP
rs1022095293 1393 dbSNP
rs1330469678 1395 dbSNP
rs569878880 1400 dbSNP
rs967829151 1406 dbSNP
rs978837100 1418 dbSNP
rs1319087272 1420 dbSNP
rs1034427823 1421 dbSNP
rs1407276179 1422 dbSNP
rs1006780661 1423 dbSNP
rs1229625169 1424 dbSNP
rs1310147553 1425 dbSNP
rs550333365 1426 dbSNP
rs898230295 1428 dbSNP
rs917199814 1430 dbSNP
rs1451357630 1431 dbSNP
rs879733707 1445 dbSNP
rs1259241838 1447 dbSNP
rs537299301 1448 dbSNP
rs1280467780 1464 dbSNP
rs972281032 1468 dbSNP
rs1344045126 1471 dbSNP
rs138965950 1474 dbSNP
rs1237904335 1477 dbSNP
rs1251474986 1482 dbSNP
rs1483790111 1506 dbSNP
rs1339410446 1515 dbSNP
rs3087532 1524 dbSNP
rs1435002002 1525 dbSNP
rs930785219 1528 dbSNP
rs1254415072 1529 dbSNP
rs185636591 1543 dbSNP
rs1401972534 1544 dbSNP
rs1013480417 1545 dbSNP
rs553129796 1557 dbSNP
rs1425640687 1564 dbSNP
rs1390960713 1568 dbSNP
rs1021309526 1569 dbSNP
rs1168113413 1572 dbSNP
rs76139799 1583 dbSNP
rs1239068186 1586 dbSNP
rs979663156 1596 dbSNP
rs1441590934 1601 dbSNP
rs546522042 1605 dbSNP
rs1206830991 1618 dbSNP
rs1481904195 1619 dbSNP
rs964764362 1632 dbSNP
rs1245989142 1634 dbSNP
rs888868264 1637 dbSNP
rs563506509 1638 dbSNP
rs1340223115 1642 dbSNP
rs1309079577 1657 dbSNP
rs1040046163 1663 dbSNP
rs923242838 1671 dbSNP
rs1307666833 1672 dbSNP
rs1405973764 1673 dbSNP
rs1416087566 1677 dbSNP
rs568137139 1689 dbSNP
rs531020791 1702 dbSNP
rs1472456718 1705 dbSNP
rs180731912 1708 dbSNP
rs564790101 1709 dbSNP
rs1047744397 1711 dbSNP
rs1250539519 1721 dbSNP
rs1222801759 1726 dbSNP
rs57969024 1737 dbSNP
rs1452797159 1738 dbSNP
rs538709271 1740 dbSNP
rs1208563054 1741 dbSNP
rs114168536 1743 dbSNP
rs558601439 1747 dbSNP
rs547347435 1749 dbSNP
rs1289529684 1754 dbSNP
rs34645102 1758 dbSNP
rs376348350 1764 dbSNP
rs1034889285 1766 dbSNP
rs1349037151 1772 dbSNP
rs1287917523 1778 dbSNP
rs1437503383 1783 dbSNP
rs768324873 1792 dbSNP
rs1014722357 1804 dbSNP
rs1038271970 1811 dbSNP
rs183991271 1812 dbSNP
rs1161300658 1813 dbSNP
rs565698129 1817 dbSNP
rs1411000471 1821 dbSNP
rs906033041 1822 dbSNP
rs1257981850 1825 dbSNP
rs529776873 1833 dbSNP
rs548314102 1834 dbSNP
rs972332953 1843 dbSNP
rs28716620 1848 dbSNP
rs1054895168 1852 dbSNP
rs1447092430 1857 dbSNP
rs868716565 1858 dbSNP
rs1013240631 1859 dbSNP
rs1211155654 1861 dbSNP
rs1327481749 1866 dbSNP
rs1254461724 1876 dbSNP
rs1220024566 1877 dbSNP
rs1370093381 1883 dbSNP
rs1273307311 1896 dbSNP
rs1435776948 1899 dbSNP
rs537249659 1904 dbSNP
rs1435818072 1905 dbSNP
rs1455614688 1913 dbSNP
rs761575325 1913 dbSNP
rs902422227 1916 dbSNP
rs1483068118 1928 dbSNP
rs1000830773 1930 dbSNP
rs1415965572 1947 dbSNP
rs149421451 1957 dbSNP
rs1171657031 1960 dbSNP
rs1476888892 1966 dbSNP
rs1449497031 1970 dbSNP
rs1032553603 1972 dbSNP
rs188379332 1974 dbSNP
rs1463983215 1976 dbSNP
rs1247796871 1992 dbSNP
rs1211184182 1996 dbSNP
rs974772275 2000 dbSNP
rs1030352198 2001 dbSNP
rs1415942878 2001 dbSNP
rs1342924983 2011 dbSNP
rs954819276 2014 dbSNP
rs370000213 2016 dbSNP
rs1432802712 2017 dbSNP
rs373839830 2019 dbSNP
rs1364286742 2020 dbSNP
rs772221869 2027 dbSNP
rs1358395718 2030 dbSNP
rs983848576 2032 dbSNP
rs28666969 2040 dbSNP
rs144797712 2053 dbSNP
rs1430054087 2062 dbSNP
rs766047855 2063 dbSNP
rs1337677805 2079 dbSNP
rs1166248190 2081 dbSNP
rs535516968 2083 dbSNP
rs1419356063 2097 dbSNP
rs1182980580 2101 dbSNP
rs1484421646 2102 dbSNP
rs927416910 2110 dbSNP
rs557039942 2113 dbSNP
rs1210416616 2120 dbSNP
rs201204172 2124 dbSNP
rs1483541810 2129 dbSNP
rs1057344134 2138 dbSNP
rs878970199 2147 dbSNP
rs751223435 2165 dbSNP
rs754668476 2166 dbSNP
rs1229997066 2194 dbSNP
rs1313292089 2194 dbSNP
rs546361184 2202 dbSNP
rs902214017 2203 dbSNP
rs564552713 2205 dbSNP
rs1305813057 2212 dbSNP
rs1217543409 2214 dbSNP
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rs1166071154 2221 dbSNP
rs16956198 2229 dbSNP
rs995939865 2240 dbSNP
rs1030131093 2241 dbSNP
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rs1473129282 2251 dbSNP
rs1254183169 2252 dbSNP
rs1203313174 2257 dbSNP
rs954755581 2260 dbSNP
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rs1320154981 2301 dbSNP
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rs978224598 2816 dbSNP
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rs558294472 2900 dbSNP
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rs4776575 3859 dbSNP
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rs1354286028 3995 dbSNP
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rs1301122822 4066 dbSNP
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rs920484173 4068 dbSNP
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rs112066437 4096 dbSNP
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rs1385217709 4845 dbSNP
rs386785245 4845 dbSNP
rs59267329 4846 dbSNP
rs544399398 4847 dbSNP
rs59924069 4848 dbSNP
rs111282076 4860 dbSNP
rs1197200078 4871 dbSNP
rs1451313689 4875 dbSNP
rs1054228492 4877 dbSNP
rs62023288 4877 dbSNP
rs1048608653 4878 dbSNP
rs1272923423 4878 dbSNP
rs35056281 4878 dbSNP
rs398099890 4878 dbSNP
rs892938271 4879 dbSNP
rs200298240 4880 dbSNP
rs887492865 4880 dbSNP
rs201495470 4881 dbSNP
rs533592515 4881 dbSNP
rs1211680347 4882 dbSNP
rs951618314 4882 dbSNP
rs983004820 4883 dbSNP
rs1339780056 4884 dbSNP
rs910073805 4884 dbSNP
rs1044451271 4885 dbSNP
rs200635933 4885 dbSNP
rs1414283665 4886 dbSNP
rs1477003403 4887 dbSNP
rs555039743 4887 dbSNP
rs1423165482 4888 dbSNP
rs1188809347 4889 dbSNP
rs1484258528 4890 dbSNP
rs1409547784 4893 dbSNP
rs573439808 4896 dbSNP
rs1031610783 4899 dbSNP
rs775981715 4904 dbSNP
rs1377345177 4905 dbSNP
rs1413073120 4908 dbSNP
rs1216558257 4910 dbSNP
rs1292570169 4911 dbSNP
rs1316976589 4912 dbSNP
rs933701159 4913 dbSNP
rs1376285691 4915 dbSNP
rs1301620378 4918 dbSNP
rs548150390 4919 dbSNP
rs924249707 4921 dbSNP
rs1333856576 4923 dbSNP
rs759277285 4931 dbSNP
rs1338518374 4935 dbSNP
rs369964520 4942 dbSNP
rs761424732 4958 dbSNP
rs1425654133 4959 dbSNP
rs865795703 4960 dbSNP
rs879125770 4961 dbSNP
rs948555938 4974 dbSNP
rs148186079 4980 dbSNP
rs577833816 4986 dbSNP
rs1484391888 4993 dbSNP
rs1457125810 4996 dbSNP
rs1273456764 5004 dbSNP
rs1223238262 5005 dbSNP
rs1209582216 5008 dbSNP
rs965433312 5017 dbSNP
rs905278462 5018 dbSNP
rs1195976730 5022 dbSNP
rs1445068553 5027 dbSNP
rs1376558533 5028 dbSNP
rs765079205 5029 dbSNP
rs918818135 5030 dbSNP
rs1459576320 5031 dbSNP
rs545307238 5040 dbSNP
rs1401330253 5042 dbSNP
rs1475328324 5045 dbSNP
rs1382135764 5050 dbSNP
rs1176653495 5052 dbSNP
rs1438867715 5056 dbSNP
rs1253324592 5060 dbSNP
rs984250204 5063 dbSNP
rs560250524 5081 dbSNP
rs1397168605 5083 dbSNP
rs916790097 5084 dbSNP
rs948442810 5086 dbSNP
rs1044179292 5088 dbSNP
rs928270261 5090 dbSNP
rs938337483 5095 dbSNP
rs1355175249 5097 dbSNP
rs1288809625 5098 dbSNP
rs56880551 5107 dbSNP
rs1376628403 5110 dbSNP
rs1304707949 5112 dbSNP
rs549447375 5118 dbSNP
rs1011449256 5125 dbSNP
rs1004495530 5127 dbSNP
rs1293121786 5132 dbSNP
rs1017596802 5136 dbSNP
rs182129737 5140 dbSNP
rs750430472 5142 dbSNP
rs562671010 5145 dbSNP
rs531878322 5146 dbSNP
rs1233768841 5155 dbSNP
rs1395601831 5157 dbSNP
rs955137136 5180 dbSNP
rs762809187 5185 dbSNP
rs766205418 5191 dbSNP
rs924305309 5197 dbSNP
rs934316488 5204 dbSNP
rs965860941 5206 dbSNP
rs914474113 5225 dbSNP
rs1215251174 5232 dbSNP
rs1353689860 5239 dbSNP
rs1257070577 5243 dbSNP
rs79206740 5244 dbSNP
rs1310763198 5255 dbSNP
rs1044628718 5258 dbSNP
rs1219409440 5261 dbSNP
rs1342607942 5264 dbSNP
rs907007685 5265 dbSNP
rs1399455856 5266 dbSNP
rs939436237 5267 dbSNP
rs756387125 5268 dbSNP
rs764454708 5273 dbSNP
rs984407302 5277 dbSNP
rs887140278 5291 dbSNP
rs1004212857 5292 dbSNP
rs1478634651 5298 dbSNP
rs1421000760 5300 dbSNP
rs916735673 5306 dbSNP
rs969566623 5311 dbSNP
rs755977848 5312 dbSNP
rs982705692 5313 dbSNP
rs928374200 5314 dbSNP
rs1202646178 5315 dbSNP
rs1482486007 5316 dbSNP
rs185280845 5324 dbSNP
rs1452757236 5325 dbSNP
rs1219619948 5332 dbSNP
rs1052746391 5336 dbSNP
rs79355237 5341 dbSNP
rs1380924192 5346 dbSNP
rs537320654 5347 dbSNP
rs1341089908 5348 dbSNP
rs986543003 5353 dbSNP
rs1394149765 5362 dbSNP
rs1031377321 5367 dbSNP
rs1466969332 5368 dbSNP
rs947295135 5372 dbSNP
rs1397716619 5376 dbSNP
rs538922568 5378 dbSNP
rs1475258925 5390 dbSNP
rs1369628250 5395 dbSNP
rs1156721084 5398 dbSNP
rs1042979708 5401 dbSNP
rs140605066 5402 dbSNP
rs990227878 5411 dbSNP
rs914208890 5426 dbSNP
rs1459337630 5428 dbSNP
rs1256422137 5438 dbSNP
rs970393112 5451 dbSNP
rs1267372106 5453 dbSNP
rs980020568 5455 dbSNP
rs1327615569 5461 dbSNP
rs372047628 5470 dbSNP
rs1339850987 5475 dbSNP
rs566075971 5489 dbSNP
rs938486556 5494 dbSNP
rs766454524 5495 dbSNP
rs1056600405 5518 dbSNP
rs190436725 5521 dbSNP
rs901219086 5522 dbSNP
rs183192255 5524 dbSNP
rs1025643336 5527 dbSNP
rs1456941884 5528 dbSNP
rs1368431515 5534 dbSNP
rs888477210 5538 dbSNP
rs573378181 5539 dbSNP
rs113641132 5541 dbSNP
rs1259454484 5544 dbSNP
rs375620691 5549 dbSNP
rs969641655 5550 dbSNP
rs1178406049 5551 dbSNP
rs369027625 5552 dbSNP
rs757419461 5560 dbSNP
rs1467420760 5568 dbSNP
rs1193237657 5569 dbSNP
rs28458348 5573 dbSNP
rs1024361718 5583 dbSNP
rs1420924813 5585 dbSNP
rs746322092 5588 dbSNP
rs544931708 5590 dbSNP
rs971891745 5595 dbSNP
rs1436905697 5599 dbSNP
rs560464900 5600 dbSNP
rs1332503950 5604 dbSNP
rs1321132140 5605 dbSNP
rs988999224 5613 dbSNP
rs1363324156 5614 dbSNP
rs1458298119 5618 dbSNP
rs758934945 5640 dbSNP
rs1167019455 5646 dbSNP
rs912882108 5657 dbSNP
rs868252856 5660 dbSNP
rs947031773 5670 dbSNP
rs556888387 5673 dbSNP
rs1422134152 5676 dbSNP
rs955797603 5688 dbSNP
rs1011296378 5695 dbSNP
rs1021728241 5696 dbSNP
rs978413538 5703 dbSNP
rs780348325 5704 dbSNP
rs1196958371 5713 dbSNP
rs1451118594 5727 dbSNP
rs576585638 5728 dbSNP
rs572410913 5730 dbSNP
rs1040881022 5731 dbSNP
rs1285182728 5740 dbSNP
rs1219620905 5748 dbSNP
rs377637552 5749 dbSNP
rs907678563 5751 dbSNP
rs1234367066 5768 dbSNP
rs1231986034 5772 dbSNP
rs539247025 5775 dbSNP
rs1299562472 5779 dbSNP
rs1397559647 5785 dbSNP
rs188522602 5785 dbSNP
rs1038434056 5787 dbSNP
rs1333122031 5790 dbSNP
rs543029304 5792 dbSNP
rs193036915 5793 dbSNP
rs1481713675 5795 dbSNP
rs1171184845 5799 dbSNP
rs1023648533 5810 dbSNP
rs1480268138 5815 dbSNP
rs1194311727 5816 dbSNP
rs768265789 5820 dbSNP
rs932662455 5836 dbSNP
rs531676204 5838 dbSNP
rs1046044 5840 dbSNP
rs905402318 5847 dbSNP
rs1443932151 5857 dbSNP
rs1189970342 5873 dbSNP
rs1199650323 5874 dbSNP
rs1318207814 5882 dbSNP
rs1279659907 5885 dbSNP
rs1216286509 5890 dbSNP
rs368446447 5891 dbSNP
rs183959410 5892 dbSNP
rs957118402 5895 dbSNP
rs1361397199 5903 dbSNP
rs988287707 5905 dbSNP
rs1171072743 5910 dbSNP
rs1019966091 5919 dbSNP
rs1460099753 5920 dbSNP
rs1008403000 5922 dbSNP
rs1053229645 5926 dbSNP
rs1476891477 5928 dbSNP
rs968450109 5929 dbSNP
rs891940279 5935 dbSNP
rs1011765966 5936 dbSNP
rs1416152374 5939 dbSNP
rs1235638945 5940 dbSNP
rs1182800394 5942 dbSNP
rs978359404 5943 dbSNP
rs1259615081 5944 dbSNP
rs910926637 5945 dbSNP
rs1316919804 5948 dbSNP
rs970167066 5950 dbSNP
rs1354069665 5952 dbSNP
rs558667767 5954 dbSNP
rs1382022047 5958 dbSNP
rs1282905438 5966 dbSNP
rs977104163 5967 dbSNP
rs1333618929 5976 dbSNP
rs1464321120 5978 dbSNP
rs1354140901 5993 dbSNP
rs922441262 5997 dbSNP
rs929773763 5998 dbSNP
rs1411573876 5999 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166 , TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 PAR-CLIP data was present in GSM1462573. RNA binding protein: AGO2. Condition:TZM-bl BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ccggaggccuucGAGGCGGGGu 5'
                      | ||||||| 
Target 5' ----cagccuguCCCCGCCCCc 3'
 		1 - 18
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000355327.3 | 3UTR | CAGCCUGUCCCCGCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462573
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl BaL
Location of target site ENST00000355327.3 | 3UTR | CAGCCUGUCCCCGCCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
66 hsa-miR-3180-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT133792 SKI SKI proto-oncogene 2 2
MIRT146658 MINK1 misshapen like kinase 1 2 4
MIRT441337 C19orf26 CACN beta subunit associated regulatory protein 2 4
MIRT449088 XPO6 exportin 6 2 2
MIRT464967 TULP1 tubby like protein 1 2 6
MIRT471706 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT473252 MIDN midnolin 2 2
MIRT483494 STMN3 stathmin 3 2 4
MIRT483726 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT485684 CCDC64 BICD family like cargo adaptor 1 2 4
MIRT486046 WSCD1 WSC domain containing 1 2 4
MIRT486522 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486779 SESTD1 SEC14 and spectrin domain containing 1 2 4
MIRT486852 DPF1 double PHD fingers 1 2 2
MIRT487035 C10orf55 chromosome 10 open reading frame 55 2 2
MIRT487082 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT487284 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 4
MIRT487992 RXRB retinoid X receptor beta 2 2
MIRT488101 POU3F1 POU class 3 homeobox 1 2 2
MIRT488547 POU3F3 POU class 3 homeobox 3 2 8
MIRT488582 ST7L suppression of tumorigenicity 7 like 2 2
MIRT488757 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489217 ASCL2 achaete-scute family bHLH transcription factor 2 2 4
MIRT489350 SYNGR1 synaptogyrin 1 2 4
MIRT489385 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489459 MSC musculin 2 2
MIRT489469 SLITRK5 SLIT and NTRK like family member 5 2 2
MIRT489749 TACC3 transforming acidic coiled-coil containing protein 3 2 2
MIRT490244 MFI2 melanotransferrin 2 2
MIRT490423 VPS51 VPS51, GARP complex subunit 2 4
MIRT490644 FEM1A fem-1 homolog A 2 2
MIRT491977 UNK unkempt family zinc finger 2 2
MIRT492469 RASD1 ras related dexamethasone induced 1 2 4
MIRT492837 NRGN neurogranin 2 2
MIRT492956 NEUROD2 neuronal differentiation 2 2 2
MIRT493002 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT493430 KCNK3 potassium two pore domain channel subfamily K member 3 2 2
MIRT493709 H2AFX H2A histone family member X 2 6
MIRT493886 FAM43A family with sequence similarity 43 member A 2 4
MIRT493955 ENG endoglin 2 2
MIRT500168 MSI1 musashi RNA binding protein 1 2 2
MIRT500196 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 4
MIRT500366 ZNF385A zinc finger protein 385A 2 2
MIRT501159 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501698 PCGF3 polycomb group ring finger 3 2 6
MIRT512173 CASP16 caspase 16, pseudogene 2 6
MIRT512237 ATG2A autophagy related 2A 2 6
MIRT512879 PITX3 paired like homeodomain 3 2 2
MIRT531184 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT548362 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT569093 FSCN1 fascin actin-bundling protein 1 2 2
MIRT574133 MARVELD1 MARVEL domain containing 1 2 2
MIRT635542 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT654098 RSBN1L round spermatid basic protein 1 like 2 2
MIRT664919 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT669843 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT670502 LYRM4 LYR motif containing 4 2 2
MIRT670526 SLC9A7 solute carrier family 9 member A7 2 2
MIRT670550 SHISA2 shisa family member 2 2 2
MIRT671031 PCDHB2 protocadherin beta 2 2 2
MIRT695219 SCAMP3 secretory carrier membrane protein 3 2 2
MIRT700129 RNF144B ring finger protein 144B 2 2
MIRT709280 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT712750 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT720753 FAM193A family with sequence similarity 193 member A 2 2
MIRT724920 VPS18 VPS18, CORVET/HOPS core subunit 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3180 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3180 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3180 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3180 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3180 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3180 Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-3180 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (MGC803)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3180 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-3180 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-3180 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3180-3p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3180-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3180-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3180-3p Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-3180-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-3180-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (MGC803)
hsa-miR-3180-3p Cisplatin 5460033 NSC119875 approved resistant Low Gastric Cancer cell line (MGC-803)
hsa-miR-3180-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3180-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3180-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3180-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-3180-3p Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-3180-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-3180-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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