pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LENG8   
Synonyms pp13842
Description leukocyte receptor cluster member 8
Transcript NM_052925   
Expression
Putative miRNA Targets on LENG8
3'UTR of LENG8
(miRNA target sites are highlighted)
>LENG8|NM_052925|3'UTR
   1 GCACCCAGCGAGGAGGGGCGGGGGCAGGGGCTGCAGCCCCCAGCGCTGCCTTTGCGGATTCTGTTTTTGAGCCGTGGACT
  81 TGGGTTGTAAATTTATTTGTGGGGAGTGCGCTCCAGGAAGAGCCACCATCCCTGCCCCCGTTTTCCCACCGGGGAGTCTG
 161 TACAGAGATTTTTCTACGTTTTTATTTTTTGCCTCAGAGGGATGGGATTGGGGAGGAGGGGATGGGCAGCGGAGGGTTGG
 241 GGGCATGGTCTGCAGGCTCATCTGTGTCCGCCTTTCACTCCACTAATGCTGTCTCAGTGTTTTCTCTCTCTCTCTTTCGA
 321 GCTTGCACTCCGGTACCCGACCCGGCGCCCTGGCCCATCCCATGCCGGGGGGCCAGTGGAAAGAAGACAGGCCGTCCAGC
 401 CCGTGCCCGCCTGCGGCGGGGGCACCCAGCAAGCCCGCCCACCGCCCGCTGCCTCACCTGCTTCGCCACAGACTCTTGTT
 481 CCCAGCCCCTTGGGGCCTCCGTGTTTGGGGTGGGGGAGCTGCTTAGAGACTGTGCCCGTCCTCGGCCCCCCACCCTGAAG
 561 TGCCAGCACCACCAGCACCAGATCCTCCGCCGCCACACCGCACTGAGGACACGCCGGCCGGGCCGCCTCGTCTCAAGTTG
 641 TATAAAGTTGTCTCCGTGTCCCCTCCTCCCTCTGCCCCCAGTGTTTCTTCTGATTTTTTTTTCCCCTTTCCCTCCCTCCC
 721 TCTCCGCATTCTTCCCTTGGTTCAGCACAGGTAAAACGGTTCCCCTCCCTCCCTGCCTTCATGGATCACCAGCTCACGTC
 801 ATGTTGCCTTCTCTTTTCTTTGTGTGTGTGTTTATTTAAGTTATTTTTCTTCCTCCTCTCCCTTTTCTTTTTGGCCCTCC
 881 CTCCCTCCCTCTTCTGCCATGTAACTGGAGGATGTGCTATGAGTTTGCAAACAGCTGGACTGTCAGGCTGCTTTTTTTCC
 961 AGATGTTCCTCCTCTGCCTCCCCTTCCCCTCCTCTCCCCTCCTTTTCCTTCCTTCCTTCCTTTCCTTGGAGCACTGAGCA
1041 CCATTTGGAAGCTTGAGAGAAACCAAAATTAAAGAGAGAAAGAGAGAGCGTGCACGCTCCTGCTTTGTCTTTCCTGTGAA
1121 AAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauucugguuCGGA--GGAAGGGa 5'
                    ||||  ||||||| 
Target 5' ttcctcctctGCCTCCCCTTCCCc 3'
966 - 989 150.00 -18.80
2
miRNA  3' gauUCUGGUUCGGAGGAAGGGa 5'
             | ::|| |:: |||||:| 
Target 5' ctcACGTCATGTTGCCTTCTCt 3'
793 - 814 139.00 -13.40
3
miRNA  3' gauucugguuCGGAGGAAGGGa 5'
                    || |:|||||| 
Target 5' ctccctctccGCATTCTTCCCt 3'
716 - 737 136.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31557409 109 COSMIC
COSN26442462 140 COSMIC
COSN31593272 141 COSMIC
COSN17624751 175 COSMIC
COSN30176665 313 COSMIC
COSN13244942 315 COSMIC
COSN30165321 323 COSMIC
COSN5762037 336 COSMIC
COSN5762039 341 COSMIC
COSN20043395 387 COSMIC
COSN20042802 438 COSMIC
COSN24393628 444 COSMIC
COSN28850775 466 COSMIC
COSN31958086 467 COSMIC
COSN30159684 539 COSMIC
COSN30544320 564 COSMIC
COSN30133794 601 COSMIC
COSN31555885 619 COSMIC
COSN30759502 629 COSMIC
COSN15666061 637 COSMIC
COSN8976066 656 COSMIC
COSN31491037 666 COSMIC
COSN31524531 690 COSMIC
COSN30510617 692 COSMIC
COSN30527377 693 COSMIC
COSN30527366 694 COSMIC
COSN1218611 703 COSMIC
COSN30745829 703 COSMIC
COSN31562852 703 COSMIC
COSN28849002 706 COSMIC
COSN2535739 713 COSMIC
COSN31488895 723 COSMIC
COSN24387568 727 COSMIC
COSN24861258 758 COSMIC
COSN15324351 811 COSMIC
COSN30176880 814 COSMIC
COSN26325147 817 COSMIC
COSN30708775 889 COSMIC
COSN30111310 968 COSMIC
COSN13830094 970 COSMIC
COSN30176760 975 COSMIC
COSN30589351 977 COSMIC
COSN18716539 984 COSMIC
COSN30149618 995 COSMIC
COSN30501232 1005 COSMIC
COSN26982342 1007 COSMIC
COSN26982341 1010 COSMIC
COSN30673901 1020 COSMIC
COSN20072590 1024 COSMIC
COSN30146933 1025 COSMIC
COSN31502357 1037 COSMIC
COSN30498553 1039 COSMIC
COSN30479532 1043 COSMIC
COSN6147355 1045 COSMIC
COSN21535944 1058 COSMIC
COSN26982343 1060 COSMIC
COSN30176922 1087 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776725684 2 dbSNP
rs1325670390 4 dbSNP
rs759869820 8 dbSNP
rs765489285 11 dbSNP
rs1440511048 13 dbSNP
rs539821003 15 dbSNP
rs574239111 15 dbSNP
rs752765383 15 dbSNP
rs776014863 16 dbSNP
rs1035925718 20 dbSNP
rs371202325 20 dbSNP
rs958920408 21 dbSNP
rs1217624859 23 dbSNP
rs1242377054 24 dbSNP
rs764732051 25 dbSNP
rs1190942904 27 dbSNP
rs1270407653 30 dbSNP
rs1032400356 31 dbSNP
rs1480439762 32 dbSNP
rs1177801415 33 dbSNP
rs1425020837 34 dbSNP
rs751982321 36 dbSNP
rs1161708278 37 dbSNP
rs755696100 38 dbSNP
rs1431790846 40 dbSNP
rs576521045 41 dbSNP
rs754625868 44 dbSNP
rs778478993 45 dbSNP
rs1405582542 46 dbSNP
rs1274213506 50 dbSNP
rs1342744019 51 dbSNP
rs117449644 56 dbSNP
rs947583084 57 dbSNP
rs977907305 60 dbSNP
rs562608472 64 dbSNP
rs1233932892 72 dbSNP
rs555918459 74 dbSNP
rs375563767 75 dbSNP
rs1051740032 78 dbSNP
rs1336648042 85 dbSNP
rs1202030680 86 dbSNP
rs982759231 90 dbSNP
rs1331280487 95 dbSNP
rs1460220654 103 dbSNP
rs1394334109 105 dbSNP
rs1166308917 107 dbSNP
rs775464010 110 dbSNP
rs1039597516 111 dbSNP
rs938151600 128 dbSNP
rs1183192523 132 dbSNP
rs1234267934 133 dbSNP
rs1414418316 135 dbSNP
rs1471656747 137 dbSNP
rs1467893707 138 dbSNP
rs1158409144 139 dbSNP
rs1360309131 140 dbSNP
rs531366832 141 dbSNP
rs1215461109 143 dbSNP
rs35645066 145 dbSNP
rs542025326 146 dbSNP
rs1055477268 151 dbSNP
rs1282244090 152 dbSNP
rs995384182 153 dbSNP
rs1032667581 154 dbSNP
rs376074180 157 dbSNP
rs1281518950 159 dbSNP
rs919638019 165 dbSNP
rs1370684342 173 dbSNP
rs1375243035 175 dbSNP
rs561940479 178 dbSNP
rs1003053459 179 dbSNP
rs1316948199 181 dbSNP
rs1400787416 183 dbSNP
rs1409654462 185 dbSNP
rs548542467 186 dbSNP
rs1221630801 193 dbSNP
rs1305662189 194 dbSNP
rs747994504 197 dbSNP
rs758183110 201 dbSNP
rs1463481184 205 dbSNP
rs1352613789 206 dbSNP
rs777804397 209 dbSNP
rs1293419118 211 dbSNP
rs1455305928 212 dbSNP
rs1490376661 212 dbSNP
rs1046758859 218 dbSNP
rs1197514412 221 dbSNP
rs1246690291 222 dbSNP
rs746944526 225 dbSNP
rs1179390060 230 dbSNP
rs547800274 231 dbSNP
rs1008168248 232 dbSNP
rs1157107480 233 dbSNP
rs45514896 242 dbSNP
rs1041334985 243 dbSNP
rs1322945634 244 dbSNP
rs1232324018 245 dbSNP
rs564515698 246 dbSNP
rs1444284397 251 dbSNP
rs899681947 252 dbSNP
rs533364623 253 dbSNP
rs1375895456 254 dbSNP
rs1237628669 257 dbSNP
rs1316752181 258 dbSNP
rs977648483 259 dbSNP
rs1345807259 260 dbSNP
rs549966609 262 dbSNP
rs1310589322 263 dbSNP
rs924674092 264 dbSNP
rs1310897432 265 dbSNP
rs1208787561 267 dbSNP
rs1218562042 268 dbSNP
rs1287128486 270 dbSNP
rs36010667 271 dbSNP
rs570148427 271 dbSNP
rs745885393 273 dbSNP
rs958150823 281 dbSNP
rs943410282 283 dbSNP
rs1177122421 284 dbSNP
rs535644429 288 dbSNP
rs1476372999 294 dbSNP
rs149072994 294 dbSNP
rs1208891018 297 dbSNP
rs758585144 300 dbSNP
rs1306149577 303 dbSNP
rs764329239 303 dbSNP
rs931120641 303 dbSNP
rs1162807192 305 dbSNP
rs1271274803 310 dbSNP
rs1388672732 310 dbSNP
rs867761423 313 dbSNP
rs1411672115 315 dbSNP
rs763454762 317 dbSNP
rs971118359 319 dbSNP
rs886953817 320 dbSNP
rs1413648630 323 dbSNP
rs1444366649 328 dbSNP
rs1316877191 329 dbSNP
rs1420735167 330 dbSNP
rs566018620 332 dbSNP
rs774725680 333 dbSNP
rs1282011041 336 dbSNP
rs1340894525 338 dbSNP
rs1214607881 339 dbSNP
rs1002589142 340 dbSNP
rs1411576958 341 dbSNP
rs959534064 342 dbSNP
rs1197205471 343 dbSNP
rs535026029 344 dbSNP
rs1443284131 345 dbSNP
rs1187123128 347 dbSNP
rs767996817 348 dbSNP
rs553352079 350 dbSNP
rs931090709 358 dbSNP
rs200045964 361 dbSNP
rs754470242 366 dbSNP
rs1232112416 367 dbSNP
rs1355512073 367 dbSNP
rs542930989 367 dbSNP
rs1463997348 368 dbSNP
rs1338547191 369 dbSNP
rs764934510 371 dbSNP
rs750163713 373 dbSNP
rs1372226509 374 dbSNP
rs1395193286 377 dbSNP
rs1331832322 381 dbSNP
rs755910630 385 dbSNP
rs1430884435 389 dbSNP
rs1392149827 390 dbSNP
rs566785102 394 dbSNP
rs539430403 395 dbSNP
rs1490559488 397 dbSNP
rs1221123635 398 dbSNP
rs987512885 399 dbSNP
rs1217337767 400 dbSNP
rs758022862 401 dbSNP
rs777462393 403 dbSNP
rs370404897 404 dbSNP
rs932555266 409 dbSNP
rs576113259 410 dbSNP
rs1448944272 411 dbSNP
rs1053656721 412 dbSNP
rs1262576497 414 dbSNP
rs189245081 415 dbSNP
rs561902196 416 dbSNP
rs746015871 418 dbSNP
rs1047429595 419 dbSNP
rs572364848 421 dbSNP
rs1046089150 424 dbSNP
rs1325030379 426 dbSNP
rs1400219372 429 dbSNP
rs1297122290 433 dbSNP
rs906540554 434 dbSNP
rs541280344 437 dbSNP
rs373853556 438 dbSNP
rs151232371 439 dbSNP
rs959649763 443 dbSNP
rs533139166 444 dbSNP
rs1254624684 445 dbSNP
rs973609967 446 dbSNP
rs1027800335 448 dbSNP
rs999084310 448 dbSNP
rs367996635 449 dbSNP
rs1487369029 455 dbSNP
rs954865818 456 dbSNP
rs1260844337 457 dbSNP
rs1268036739 459 dbSNP
rs768879946 465 dbSNP
rs1017622065 466 dbSNP
rs964741930 467 dbSNP
rs192699796 468 dbSNP
rs1293373377 474 dbSNP
rs1216073020 476 dbSNP
rs1380559394 478 dbSNP
rs1384301541 479 dbSNP
rs1420019821 484 dbSNP
rs1157697768 486 dbSNP
rs1357495861 486 dbSNP
rs563610951 487 dbSNP
rs1358187571 488 dbSNP
rs1426052275 489 dbSNP
rs1309526863 490 dbSNP
rs1293581056 493 dbSNP
rs1173344762 495 dbSNP
rs920571314 497 dbSNP
rs868735036 498 dbSNP
rs762176280 500 dbSNP
rs908256157 501 dbSNP
rs529424132 502 dbSNP
rs1308859411 506 dbSNP
rs1261798580 507 dbSNP
rs1218246022 508 dbSNP
rs943722804 510 dbSNP
rs982717957 511 dbSNP
rs1224900944 519 dbSNP
rs1346895090 522 dbSNP
rs1226593825 525 dbSNP
rs908490490 525 dbSNP
rs549156913 526 dbSNP
rs1278853350 532 dbSNP
rs976865686 533 dbSNP
rs938483095 535 dbSNP
rs575836146 538 dbSNP
rs761667324 539 dbSNP
rs915768150 539 dbSNP
rs932584725 541 dbSNP
rs565979677 542 dbSNP
rs1378152631 543 dbSNP
rs534894399 544 dbSNP
rs752165336 545 dbSNP
rs1188179565 546 dbSNP
rs183600073 546 dbSNP
rs1455892743 547 dbSNP
rs934354286 548 dbSNP
rs1421147620 549 dbSNP
rs763745681 550 dbSNP
rs1195019044 551 dbSNP
rs371766205 552 dbSNP
rs751368532 553 dbSNP
rs1003622646 556 dbSNP
rs1033669886 558 dbSNP
rs757074374 562 dbSNP
rs890728531 563 dbSNP
rs895130094 564 dbSNP
rs1242645555 566 dbSNP
rs1259960398 568 dbSNP
rs1458140755 571 dbSNP
rs1197841759 573 dbSNP
rs1236141923 574 dbSNP
rs995067030 579 dbSNP
rs1462443244 582 dbSNP
rs1027832797 584 dbSNP
rs1182109471 585 dbSNP
rs1412572274 586 dbSNP
rs779783088 587 dbSNP
rs571925644 588 dbSNP
rs1005423516 589 dbSNP
rs201772847 590 dbSNP
rs1170502168 591 dbSNP
rs1028193177 592 dbSNP
rs1450571429 593 dbSNP
rs1416492301 598 dbSNP
rs1303672844 599 dbSNP
rs576980894 600 dbSNP
rs758908650 601 dbSNP
rs1280157078 602 dbSNP
rs920954859 604 dbSNP
rs953670338 605 dbSNP
rs1239821229 606 dbSNP
rs989411427 607 dbSNP
rs1256023780 611 dbSNP
rs7254603 612 dbSNP
rs749239475 613 dbSNP
rs945309505 613 dbSNP
rs576045160 614 dbSNP
rs544802272 616 dbSNP
rs1482064953 617 dbSNP
rs1195306391 618 dbSNP
rs114022240 620 dbSNP
rs1477174520 621 dbSNP
rs1170618008 623 dbSNP
rs1422055321 625 dbSNP
rs1416555199 626 dbSNP
rs1177213262 627 dbSNP
rs574398515 630 dbSNP
rs1464728217 631 dbSNP
rs1300211691 632 dbSNP
rs978525615 635 dbSNP
rs772393013 636 dbSNP
rs1406626839 637 dbSNP
rs1276276073 643 dbSNP
rs1369617906 645 dbSNP
rs189505511 653 dbSNP
rs756590621 656 dbSNP
rs1310155172 657 dbSNP
rs1191587467 659 dbSNP
rs1218351725 661 dbSNP
rs778132213 662 dbSNP
rs1453653164 663 dbSNP
rs890133568 664 dbSNP
rs1487692507 667 dbSNP
rs1190834251 669 dbSNP
rs1401050363 670 dbSNP
rs564343866 671 dbSNP
rs1479281279 672 dbSNP
rs886731305 673 dbSNP
rs1192203902 676 dbSNP
rs1424910031 678 dbSNP
rs1282292510 679 dbSNP
rs1431755759 679 dbSNP
rs868607038 681 dbSNP
rs944925789 683 dbSNP
rs1160714159 684 dbSNP
rs1361378852 685 dbSNP
rs771363051 688 dbSNP
rs1296408519 692 dbSNP
rs577895549 693 dbSNP
rs754920356 694 dbSNP
rs778455655 694 dbSNP
rs774995081 696 dbSNP
rs995448911 697 dbSNP
rs1342906502 699 dbSNP
rs1274120538 700 dbSNP
rs181164622 703 dbSNP
rs747694487 703 dbSNP
rs763724812 704 dbSNP
rs1362065760 705 dbSNP
rs1241992765 706 dbSNP
rs1309580201 707 dbSNP
rs1352497114 708 dbSNP
rs1004987400 709 dbSNP
rs886546524 709 dbSNP
rs1291397216 710 dbSNP
rs1034991473 713 dbSNP
rs1192814736 715 dbSNP
rs1474412749 716 dbSNP
rs1222977633 717 dbSNP
rs960707759 721 dbSNP
rs1467448725 725 dbSNP
rs199571138 726 dbSNP
rs761564493 727 dbSNP
rs1209130226 729 dbSNP
rs1439318276 732 dbSNP
rs529367162 737 dbSNP
rs1156981827 741 dbSNP
rs1416074387 745 dbSNP
rs1405973706 747 dbSNP
rs767445746 748 dbSNP
rs1348016245 757 dbSNP
rs1448778504 758 dbSNP
rs997955280 759 dbSNP
rs771804093 763 dbSNP
rs1375776105 764 dbSNP
rs1028048316 765 dbSNP
rs1260554362 766 dbSNP
rs1237512465 770 dbSNP
rs1285531783 778 dbSNP
rs1356475529 779 dbSNP
rs1341934997 781 dbSNP
rs1400092691 781 dbSNP
rs953702598 783 dbSNP
rs989183948 786 dbSNP
rs542668139 787 dbSNP
rs1289854152 790 dbSNP
rs1467518592 791 dbSNP
rs925824419 794 dbSNP
rs979024251 794 dbSNP
rs1408132871 796 dbSNP
rs1200993088 798 dbSNP
rs750201093 799 dbSNP
rs1457555374 801 dbSNP
rs1179959317 803 dbSNP
rs1481232025 804 dbSNP
rs934374630 805 dbSNP
rs756121848 807 dbSNP
rs1198893707 810 dbSNP
rs3745438 811 dbSNP
rs1162714702 812 dbSNP
rs1238407198 812 dbSNP
rs1415656662 814 dbSNP
rs1467115315 815 dbSNP
rs911519373 815 dbSNP
rs1039252720 821 dbSNP
rs561715173 821 dbSNP
rs747309125 823 dbSNP
rs922217624 823 dbSNP
rs1171217992 827 dbSNP
rs1413771643 831 dbSNP
rs753918417 831 dbSNP
rs1410864364 832 dbSNP
rs1379521898 833 dbSNP
rs1399290864 833 dbSNP
rs1420657464 835 dbSNP
rs927805198 835 dbSNP
rs372123870 836 dbSNP
rs753652584 836 dbSNP
rs1467169240 844 dbSNP
rs1444259012 845 dbSNP
rs1335825576 850 dbSNP
rs1162964669 853 dbSNP
rs1340680210 854 dbSNP
rs1055144178 856 dbSNP
rs755080380 857 dbSNP
rs186611630 859 dbSNP
rs1183912683 861 dbSNP
rs1281921736 862 dbSNP
rs757100483 862 dbSNP
rs1319309625 863 dbSNP
rs745552100 868 dbSNP
rs1259217172 869 dbSNP
rs1317720403 872 dbSNP
rs1194400614 874 dbSNP
rs1237993149 875 dbSNP
rs760061686 875 dbSNP
rs776917477 875 dbSNP
rs1281050870 877 dbSNP
rs779043477 878 dbSNP
rs1314474100 879 dbSNP
rs1321883221 879 dbSNP
rs765699856 879 dbSNP
rs1255495867 880 dbSNP
rs1478810294 881 dbSNP
rs748378494 882 dbSNP
rs551582288 884 dbSNP
rs1460319534 886 dbSNP
rs1174097254 888 dbSNP
rs1448902297 890 dbSNP
rs778117213 892 dbSNP
rs1062932 895 dbSNP
rs747317750 896 dbSNP
rs1392208792 897 dbSNP
rs775596799 897 dbSNP
rs1341863377 900 dbSNP
rs1400041671 911 dbSNP
rs779482917 914 dbSNP
rs1040608574 918 dbSNP
rs1279427168 918 dbSNP
rs771486093 920 dbSNP
rs1457488452 926 dbSNP
rs1225773076 927 dbSNP
rs777192029 930 dbSNP
rs571830433 935 dbSNP
rs902024531 940 dbSNP
rs1167138224 941 dbSNP
rs1417607441 942 dbSNP
rs1278401417 943 dbSNP
rs1179725929 944 dbSNP
rs996314065 945 dbSNP
rs1354378730 946 dbSNP
rs1251694483 947 dbSNP
rs1022868587 949 dbSNP
rs1028080752 950 dbSNP
rs1266752782 951 dbSNP
rs763040960 951 dbSNP
rs531274898 952 dbSNP
rs889571859 954 dbSNP
rs1262457516 955 dbSNP
rs1166408092 961 dbSNP
rs1213199341 962 dbSNP
rs1431881775 963 dbSNP
rs1352617564 966 dbSNP
rs1395961841 967 dbSNP
rs771665206 970 dbSNP
rs1000128531 971 dbSNP
rs1022400130 973 dbSNP
rs1302618724 978 dbSNP
rs1369476445 979 dbSNP
rs1387319029 981 dbSNP
rs1391516543 983 dbSNP
rs1440785261 984 dbSNP
rs1451885540 985 dbSNP
rs966379246 985 dbSNP
rs549506136 987 dbSNP
rs1367833834 988 dbSNP
rs1225612724 998 dbSNP
rs955901268 1005 dbSNP
rs988516292 1005 dbSNP
rs911675050 1007 dbSNP
rs965671437 1010 dbSNP
rs974404694 1015 dbSNP
rs1434315488 1017 dbSNP
rs978427275 1021 dbSNP
rs774883266 1025 dbSNP
rs1274474170 1026 dbSNP
rs1184263436 1029 dbSNP
rs569584702 1031 dbSNP
rs750379463 1033 dbSNP
rs535452245 1034 dbSNP
rs1345429496 1035 dbSNP
rs1255243329 1045 dbSNP
rs1233863656 1049 dbSNP
rs1248530054 1055 dbSNP
rs1049329132 1056 dbSNP
rs1398243189 1064 dbSNP
rs555467646 1067 dbSNP
rs1402136260 1071 dbSNP
rs758668911 1071 dbSNP
rs940909647 1073 dbSNP
rs1190689656 1077 dbSNP
rs1056556612 1079 dbSNP
rs1379894467 1080 dbSNP
rs751705318 1081 dbSNP
rs896594597 1081 dbSNP
rs960530264 1083 dbSNP
rs1045056066 1086 dbSNP
rs1484519037 1087 dbSNP
rs1458573439 1088 dbSNP
rs565801495 1088 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucGGAGGA-AGGGa 5'
                     |||||| |||| 
Target 5' --------uccCCUCCUCUCCCc 3'
1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166 , TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 PAR-CLIP data was present in GSM1462573. RNA binding protein: AGO2. Condition:TZM-bl BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000326764.5 | 3UTR | UCCCCUCCUCUCCCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000326764.5 | 3UTR | UCCCCUCCUCUCCCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000326764.5 | 3UTR | CCCCUUCCCCUCCUCUCCCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1462573
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl BaL
Location of target site ENST00000326764.5 | 3UTR | UCCCCUCCUCUCCCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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