Gene Symbol |
ANK1
|
Synonyms |
ANK, SPH1, SPH2 |
Description |
ankyrin 1 |
Transcript |
NM_000037
|
Other Transcripts |
NM_001142445
,
NM_001142446
,
NM_020475
,
NM_020476
,
NM_020477
,
NM_020478
,
NM_020480
|
Expression |
|
Putative miRNA Targets on ANK1 |
|
3'UTR of ANK1 (miRNA target sites are highlighted) |
>ANK1|NM_000037|3'UTR
1 CCCCGAGCCGCTCTCCTTGGAGTAGCCTCTCGGGAGGATCACACCTCGACACCCAACCCCTGAACCCCACACACTCTGCC
81 ATGCACACAGGAGGAGAGCTGGACCTGAGGGCCACCGCAGCGGTGCACACATTCCTCTGGGCTGACGGCATGACCTCTGT
161 AAGGGACTCCTGCTAGTCCCCTCTTGGCATGAATGACTGACTGTAGACGCATGACCTCCAGGCTTCAATCCTGCCTCTTG
241 CAATGACAGCTGATCTGTCGGAACCAGGACACAAAAGCAGCAAGAAGCGGGGAGAGAGAGGGATAGAAAACAAGCGCAGG
321 AGAGCCTGCGAACGCAAAAGTGAATGAGGGCTTTTTGTGGCTGGGGATGGGTTTTGGTTTTGGGGTTTTTTTTTTAAATT
401 GTTTTGACTTCGTACAGGGTACTTTTTCCCAACCTCATCTGTCAGAAATCCATGTGGGCTTCCTGGAAAGAAAAAAAAAA
481 AAAAGAAAACTAGGCATGAAATCAGTTTAACACCTTAATCTTAAGCCATGTCCTCATCTGCCCACCCTCCCCAACCCACA
561 TACCTCCATTCCACTTGTGACACCCCCTCGACTCCCTGGTGACGCTCCTCCCAGATCGCTCTACATGACATTCAGGACAC
641 ACACACACACACACACACACCACTCGCCTCCACTGAATCTACACACAGATTTTACTGTGACTTCTGAAGCTGTATAGACT
721 CTGCTGTGGATAAATTGGAATTTTTTATGTTGTCTCTCTCTCTGCCAATTTCAATACGAATCATCTTCCAATGGAAAATC
801 ATTACCTTGAAGAGTGCATTCGGGGTTCCTTGTGTTAGGGACTTAAGAATCTGAGGCGAGGACCCCCAGGCTTACCTGTA
881 GGACTCAAAGGGAGCCAGGACCCCATCTGAAAGGGTCTCCTCTCTCAGTTGGGGGACAGGCCGGTGGCTGACCCAGGATT
961 GCACCAGCATGTCCATAGAGAAGAGGTTTTCTATGTCTTCAAGCACTATATCATAGTCCGTGTTCAAAGTGTAAACTGTA
1041 CAGTAATCAGCCTTGTGT ATATGAAAAACAATAAATACTATGCAAACCAATAGAAACATTTAGCAGTACGTACAGAGCCT
1121 GACAGCGCAGCTCCTGAGGACTTCTGCGGCTGCAGGAGAAGGAGCTGTGGCCTGTCTTTCAGTGAAAGAGGAAGGAAAGG
1201 AGTAGGGCTAGTGAATGTATCTGCCAGGTCTTAGAAGTCAGGACCACCCAGGGTCTCCCAGAGTGAACTTGGTGCTCTAA
1281 GTCCAGGCAGCCTGCAGGCTGGGGACCCTGGGTGCAGGTGCCAGGCTCGAGGCTGTTCCCTGTCCTGCCTCAGTGCCTCC
1361 CCTCTGCCCAGCCCCTGTGGCCTCTTGGAGAGGCGAGCCAGGGGGCTCCCCGGACCGCATGGCCGGTGAGAGTAGAGTCG
1441 GAGGCGGAGAGCCTGGACGCCCAGAGGCCGGGGCCAGGCTCTGGGTCAAGGCAGGAAGGAGACAGACAGCTGGCAGTTCC
1521 TCGCCTCGGTGCCATCAGGGAGGAGCCTTAAGTTCCACTAGAGCCTCCGGCCCAGGGAGGCCAGAATCAGCACAATCCCG
1601 GCCCCGCCCTCGCGGCGGGCGCCCCCAGGGCCAGGAGAGAGAGACAGGGCTGGCTCCTCTCGCCCCTGGAGCCGCGGTGT
1681 GGACGGCCCGGCCCCGTCCGCCCCGCCGCTCTGCGGGAGTGTCCTCGGGACACACTTAAACCTTCCAAGTAGCACAGAAG
1761 CCCCCTCCACGTCAGAGGCCCCCTGGCCGCGGGGCCTGTGAGCGGAGAGGGGCCCTGCTTCCCACACAAATCCGCCCCGG
1841 TGCACCCCCGGCCAGGCAGGCCCCGGGGCGGCCTAGGCGCCTTGTCGGCCGGGGGTGGGGCTGCTTTTGCTTCCTTTAGA
1921 GGGGCGGGCAGGGAGAGGAAGCTCTAGCTCCGGGCCTGAGTTTCCCCGAGGCTGCGTCGGAGGAGCTGCAGGGCGAGCCC
2001 GGACGGCTGCCGTCTCCGCCAGAGGCCACCCCGGCCCGGCCTCCAGGGCGCAGAGGCGCCCCCCTCCATCCTCCCCCATC
2081 CCGGGGGCCACGGCAGGGGGGCCGCACAGCGCGGCTGGGACCGATTCGGTGACGGCCCAAGGAAGCTGGGCTCAGGGCTC
2161 GCCTCTCCCGCCTCGATCCTGCACCTTCCTCTCCCAGGTCGCTGCTGCAGCCAACCCAGTAGCCCCCTTAGCGCCCCCGC
2241 GGACCCCGCAGCTCCAGACTCCGCTTTGGCACCTCTGCTCCGGCTGGCATGGCTGCACGCTCCGGCTGCTAGTAGGAGCC
2321 GTTAGGGGAGGAGTTTGGGGTCTCCACACGATGCCTAGAGAATGCTGCAGTCTGCACATTAGACGCTTTTTAGAAGTTTT
2401 GAAATTACCTTGATTTTTTTAATTGTTATGAAAATGGATCTTTTCTTGACTCTCCCACATGCTCTGTTATGGGAGAGAAT
2481 CCCCTACCCTACTCTGATGTATAGACCATTCTCCCTTCACCAGCCGAACCAATGTCAAAATTAATAAAGAAATGGACTAA
2561 TGGCAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' augcgGUCAGUUA--UGGAACACu 5'
|||| ||| :|||||||
Target 5' ctgtaCAGT-AATCAGCCTTGTGt 3'
|
1036 - 1058
|
158.00 |
-15.60 |
2
|
miRNA 3' augcgGUCAG--UUAUGGAACACu 5'
|| || ::| |||||||
Target 5' gagtgCATTCGGGGTTCCTTGTGt 3'
|
812 - 835
|
151.00 |
-15.30 |
3
|
miRNA 3' augCGG-UCAGUUAUGGAACAcu 5'
||| || | :||||||
Target 5' gcgGCCTAGGC---GCCTTGTcg 3'
|
1868 - 1887
|
128.00 |
-12.50 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|