pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC9A1   
Synonyms APNH, LIKNS, NHE-1, NHE1, PPP1R143
Description solute carrier family 9 member A1
Transcript NM_003047   
Expression
Putative miRNA Targets on SLC9A1
3'UTR of SLC9A1
(miRNA target sites are highlighted)
>SLC9A1|NM_003047|3'UTR
   1 CACCAGGGCCAGCAGGCAGCGCCTGTCCCCTCACAGACTCTTCCACCAGAGCAGGGGCTGCTGGGGGCTCCCCTTGCCCT
  81 TCCTGACCCGGATTGGCCCTGCCCCTCCCCCTACCGCATGGCAGCTGGGCCCACAGCCCCCACCCCAGCACAGCTCCTCC
 161 CCTGCCGCCTCCCGGGAAGCATCCTCCCCACCAGAGCTGCCTCCCCAATCCATTTGGCAGAACTGCTGGGGCTGGTGAGG
 241 CCGGCCCTGCCCCTCCCTAGATCCAGGCTTCTCCCGGACCTGGACTAGGGCCTCGGAGGCTCCTCCCTCTGCCTCATCCT
 321 CCTCCTCATTCAGACCAATCTTAGTTTCTAACCAAAGAGTCTCTGGCTCAGCTGTGGTCCCACCCAGGAAGGGAGGGAGC
 401 TGAGGCCTCCCTTGAGTAGGCCCTGCTTTATCAGGGGACAAACCAGGGGTACCAGGCACATGGCTGGGGGAGGGACTGCT
 481 GACCCACCAAGGTCTCACACTCCTCCTGCCAGCTCTGTCACCCTGGCCACCACCCAACCTGTCCTTACTCAGAGCTGCGG
 561 GCTGAGGGCATCTCTGAGTGTCTCTGCCTGGAGCAGGGGTGGTTTCTACGGTGACAGTGACGTGACTCAGAGCTTTTCGA
 641 ACTGTGCTCCCACGGGGACCACTGGGCCCCTCAGGGGAAGCTGCTAGGGGAAGGACTGGCCGTGGCTCCAGAATGTGCTG
 721 CCTTTTTAAGTTTTGTTTGTTCACACTCCTATATATGATTGTTTGCACAGAGGGCGCTCCTGTTTTTAAAACATTTTGAA
 801 AACCCCTGGCTGAACAGTGCTCTGCCTCTAACTCCCTCCTCACACTCCAGAATTACCCTTCCTCATCTGTGCCTGTCTGT
 881 CCAACCCCTCCCCCACGTCTCTCTGCCTGCTGGGCTCTTAACTGTTGCTCGAAGACTGTGACATCAGAAGTAACTCCCAC
 961 TCCTAATCAAGAGTCTCTCCAGCCTCACAGATGCTGGCCTCTTGGCACCTGCCTAGCTCTTGGGCCTGACCTCCAGTCCT
1041 GCTGGCCTGCTCTTACTTCCCCCACCCTGGGTTTGGCCCCTGGAACCTTTCCCTTGTGTGTACCACACCCTGCCTGCTGT
1121 GGAGCCCATTGTGGAGGCGGTGGGGGGGAGAAGGCCTCCCCTGAGGATCCCCTGTCCCCTGGGGCTGGTGGATTGGGCAG
1201 AATCCTGGGCCCCCAGAGACCTTTGCCCACACACACTCCTTCCCCTTGTCCCTGGGGCACTCCCCCAGGATTGTGCAATA
1281 GTCAGAGTGTCCCTTTTTGCAGGGGACTGGGCCATGGGTCCTCGGCCCATCTGTCCATCCTCCTCTCCATGCAAGTGCTG
1361 TTTGGGCAGGAGTCACCATGCAAGGGTGACATCGACAACCACGTACCAAGCCACCGCAGCTGCTGCCACTCTGCTGCCTG
1441 TACAGAAGAAACTGAATCTTTTTCATATTCTAATAAATCAATGTGAGTTTTTAATAGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauuCUGGU---UCGGAGGAAGGGa 5'
              | |||   |  ||||||||| 
Target 5' ctttGCCCACACACACTCCTTCCCc 3'
1221 - 1245 154.00 -18.90
2
miRNA  3' gaUUCUGGUUCGGA--GGAAGGGa 5'
            :||:||:: |||  || |||| 
Target 5' gtGAGGCCGGCCCTGCCCCTCCCt 3'
235 - 258 134.00 -24.10
3
miRNA  3' gauucUGGU-UCGGAGGAAGGGa 5'
               |||| |||: ||| ||| 
Target 5' tccccACCAGAGCTGCCTCCCCa 3'
185 - 207 133.00 -16.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30510464 15 COSMIC
COSN31593658 65 COSMIC
COSN31562690 90 COSMIC
COSN26509180 106 COSMIC
COSN8638087 164 COSMIC
COSN31536314 329 COSMIC
COSN30540544 372 COSMIC
COSN28197997 395 COSMIC
COSN31543143 493 COSMIC
COSN6451837 579 COSMIC
COSN31490533 696 COSMIC
COSN31577082 780 COSMIC
COSN31531488 830 COSMIC
COSN31544472 834 COSMIC
COSN26464965 841 COSMIC
COSN26465285 909 COSMIC
COSN26585350 915 COSMIC
COSN16128618 947 COSMIC
COSN5740354 1094 COSMIC
COSN31488842 1116 COSMIC
COSN31540967 1161 COSMIC
COSN31577315 1245 COSMIC
COSN31594858 1416 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755873620 1 dbSNP
rs4266911 2 dbSNP
rs767481023 8 dbSNP
rs980621693 10 dbSNP
rs1453946167 12 dbSNP
rs1251396013 16 dbSNP
rs754816582 20 dbSNP
rs750523701 21 dbSNP
rs200032250 25 dbSNP
rs762145434 27 dbSNP
rs755414999 28 dbSNP
rs1276336985 34 dbSNP
rs200497096 42 dbSNP
rs1176419570 46 dbSNP
rs956619308 51 dbSNP
rs1307538568 57 dbSNP
rs931753556 60 dbSNP
rs1251390867 69 dbSNP
rs1030635357 72 dbSNP
rs997892977 85 dbSNP
rs1220742919 89 dbSNP
rs900913812 90 dbSNP
rs1246490235 97 dbSNP
rs1293650014 97 dbSNP
rs1018471413 104 dbSNP
rs1285519364 110 dbSNP
rs1217412116 113 dbSNP
rs1393370934 113 dbSNP
rs569420449 115 dbSNP
rs920254338 116 dbSNP
rs973052061 125 dbSNP
rs889261570 132 dbSNP
rs1368059048 145 dbSNP
rs962024310 147 dbSNP
rs1406097122 151 dbSNP
rs552011931 156 dbSNP
rs1291883093 157 dbSNP
rs1156387546 165 dbSNP
rs754230646 166 dbSNP
rs898083998 167 dbSNP
rs1190180982 168 dbSNP
rs1170099088 169 dbSNP
rs1464253561 171 dbSNP
rs1431182901 173 dbSNP
rs200099613 174 dbSNP
rs879388717 180 dbSNP
rs1012280422 183 dbSNP
rs939387642 186 dbSNP
rs191898529 189 dbSNP
rs981285576 191 dbSNP
rs1217509143 194 dbSNP
rs1347494908 195 dbSNP
rs1265236958 204 dbSNP
rs1304221704 205 dbSNP
rs1399937932 206 dbSNP
rs1359026960 211 dbSNP
rs1178844280 218 dbSNP
rs1480711219 219 dbSNP
rs948178569 222 dbSNP
rs915028312 232 dbSNP
rs1174949692 236 dbSNP
rs989318148 242 dbSNP
rs546576728 246 dbSNP
rs369065288 268 dbSNP
rs1487959988 271 dbSNP
rs956609694 275 dbSNP
rs1486298099 276 dbSNP
rs1041278757 278 dbSNP
rs111692690 282 dbSNP
rs1265424775 287 dbSNP
rs976403488 291 dbSNP
rs965441046 294 dbSNP
rs55801518 295 dbSNP
rs1007022617 299 dbSNP
rs1339163648 302 dbSNP
rs1298149168 305 dbSNP
rs752699041 313 dbSNP
rs767392890 319 dbSNP
rs1299869543 320 dbSNP
rs1301836540 322 dbSNP
rs1467904652 324 dbSNP
rs1393645314 328 dbSNP
rs1027739360 330 dbSNP
rs1176597997 345 dbSNP
rs1477442022 351 dbSNP
rs1374224365 354 dbSNP
rs1371306055 359 dbSNP
rs995005224 364 dbSNP
rs1444849640 365 dbSNP
rs920309637 365 dbSNP
rs1408506814 372 dbSNP
rs1177385986 374 dbSNP
rs1462871640 381 dbSNP
rs1263810581 395 dbSNP
rs1198138131 397 dbSNP
rs1316181719 399 dbSNP
rs1253543941 405 dbSNP
rs761628189 414 dbSNP
rs3765514 416 dbSNP
rs940346479 418 dbSNP
rs1340173506 423 dbSNP
rs1311109073 424 dbSNP
rs907557369 426 dbSNP
rs1384604807 430 dbSNP
rs982040804 435 dbSNP
rs564472575 437 dbSNP
rs1462494915 446 dbSNP
rs990576371 448 dbSNP
rs957876585 449 dbSNP
rs1446640184 451 dbSNP
rs1032402383 465 dbSNP
rs763521615 466 dbSNP
rs1456452651 467 dbSNP
rs906501657 468 dbSNP
rs1045083029 486 dbSNP
rs1356329036 492 dbSNP
rs762454416 496 dbSNP
rs1264022680 499 dbSNP
rs1248679154 500 dbSNP
rs1360656236 503 dbSNP
rs1462395577 508 dbSNP
rs1315242642 515 dbSNP
rs966720614 519 dbSNP
rs1243428537 534 dbSNP
rs1202607495 536 dbSNP
rs1020067123 537 dbSNP
rs948099470 539 dbSNP
rs1058269 541 dbSNP
rs1008481945 542 dbSNP
rs775150076 546 dbSNP
rs371987196 553 dbSNP
rs1426267886 554 dbSNP
rs1050011517 558 dbSNP
rs565086953 559 dbSNP
rs769416935 561 dbSNP
rs1182681905 570 dbSNP
rs1317979910 576 dbSNP
rs1451505234 577 dbSNP
rs5810 579 dbSNP
rs1225394695 586 dbSNP
rs1490596864 589 dbSNP
rs940465128 596 dbSNP
rs1238961810 597 dbSNP
rs1348163346 603 dbSNP
rs776407925 608 dbSNP
rs1444714909 609 dbSNP
rs576887001 610 dbSNP
rs553755082 614 dbSNP
rs1239092560 615 dbSNP
rs770961351 621 dbSNP
rs1301158013 622 dbSNP
rs1406698142 629 dbSNP
rs1365954691 633 dbSNP
rs923837796 638 dbSNP
rs976643293 639 dbSNP
rs1046528521 641 dbSNP
rs1387464805 649 dbSNP
rs533907840 653 dbSNP
rs1399814542 654 dbSNP
rs1477711026 671 dbSNP
rs916465678 674 dbSNP
rs990713760 675 dbSNP
rs1454274419 679 dbSNP
rs1262896009 680 dbSNP
rs746934332 687 dbSNP
rs1449130560 688 dbSNP
rs574810561 689 dbSNP
rs555000274 691 dbSNP
rs1205372356 693 dbSNP
rs1156748887 697 dbSNP
rs1445971446 700 dbSNP
rs777700002 701 dbSNP
rs1277297688 702 dbSNP
rs978192747 706 dbSNP
rs1346769202 708 dbSNP
rs1026724382 711 dbSNP
rs112690327 715 dbSNP
rs528005485 721 dbSNP
rs1254518286 728 dbSNP
rs1008197350 729 dbSNP
rs748189696 739 dbSNP
rs1015063183 742 dbSNP
rs569394225 751 dbSNP
rs1004173228 761 dbSNP
rs1476563523 762 dbSNP
rs906789956 773 dbSNP
rs1045472250 774 dbSNP
rs1460638812 775 dbSNP
rs1260677095 777 dbSNP
rs1205057303 778 dbSNP
rs1323661199 781 dbSNP
rs1238601794 785 dbSNP
rs1272142079 785 dbSNP
rs1012285668 786 dbSNP
rs1270611888 787 dbSNP
rs1315748563 788 dbSNP
rs893883867 789 dbSNP
rs1380909590 792 dbSNP
rs1338982609 804 dbSNP
rs1453411052 805 dbSNP
rs1168875438 820 dbSNP
rs1412191010 822 dbSNP
rs1420650141 826 dbSNP
rs1163086354 827 dbSNP
rs1443596170 844 dbSNP
rs1338881946 848 dbSNP
rs1297488939 867 dbSNP
rs779324796 875 dbSNP
rs1185075391 877 dbSNP
rs1461330176 882 dbSNP
rs1004635450 884 dbSNP
rs552725981 890 dbSNP
rs1309238690 891 dbSNP
rs1046141744 892 dbSNP
rs949031712 894 dbSNP
rs755218502 896 dbSNP
rs1365679049 897 dbSNP
rs1054950594 905 dbSNP
rs1444958201 913 dbSNP
rs936623955 915 dbSNP
rs1323514048 924 dbSNP
rs538745428 926 dbSNP
rs925136953 930 dbSNP
rs1165014263 931 dbSNP
rs1162306084 937 dbSNP
rs978289864 944 dbSNP
rs566524180 948 dbSNP
rs1481347686 950 dbSNP
rs1374480941 958 dbSNP
rs1221678372 959 dbSNP
rs1040907160 973 dbSNP
rs1489765708 974 dbSNP
rs1293762721 982 dbSNP
rs1193410771 997 dbSNP
rs546640000 998 dbSNP
rs1429546981 999 dbSNP
rs1262900926 1015 dbSNP
rs529678489 1019 dbSNP
rs183919992 1030 dbSNP
rs1292627314 1032 dbSNP
rs986901587 1035 dbSNP
rs954010855 1046 dbSNP
rs1209263229 1053 dbSNP
rs1403641832 1053 dbSNP
rs1367842838 1054 dbSNP
rs1304184268 1055 dbSNP
rs1354311557 1056 dbSNP
rs1424869040 1059 dbSNP
rs1344199759 1060 dbSNP
rs1420295796 1063 dbSNP
rs1408082354 1066 dbSNP
rs1198600168 1067 dbSNP
rs985522053 1071 dbSNP
rs974314803 1072 dbSNP
rs1222997575 1077 dbSNP
rs1315387263 1078 dbSNP
rs1485438032 1080 dbSNP
rs1259132183 1084 dbSNP
rs1381045374 1087 dbSNP
rs7556004 1088 dbSNP
rs56314724 1100 dbSNP
rs1222207372 1105 dbSNP
rs1347980356 1108 dbSNP
rs919657901 1109 dbSNP
rs1284521319 1112 dbSNP
rs1004756774 1119 dbSNP
rs1360332635 1124 dbSNP
rs907383754 1126 dbSNP
rs1276008434 1127 dbSNP
rs1455086843 1128 dbSNP
rs1388720097 1137 dbSNP
rs550628926 1138 dbSNP
rs961123771 1139 dbSNP
rs530824750 1142 dbSNP
rs865957605 1143 dbSNP
rs554855857 1144 dbSNP
rs1325786946 1149 dbSNP
rs1397998072 1149 dbSNP
rs945181051 1149 dbSNP
rs1168193630 1150 dbSNP
rs201604579 1154 dbSNP
rs878962024 1155 dbSNP
rs545143749 1159 dbSNP
rs921265582 1170 dbSNP
rs1191906023 1171 dbSNP
rs1407679986 1173 dbSNP
rs1173025438 1174 dbSNP
rs1481718242 1174 dbSNP
rs369070973 1192 dbSNP
rs1023919811 1196 dbSNP
rs1371117073 1201 dbSNP
rs1172330603 1203 dbSNP
rs1449881557 1204 dbSNP
rs1012645773 1207 dbSNP
rs962750980 1209 dbSNP
rs1016232704 1211 dbSNP
rs1462654775 1224 dbSNP
rs893790515 1226 dbSNP
rs868699020 1230 dbSNP
rs1479970023 1237 dbSNP
rs983077156 1242 dbSNP
rs1275190833 1254 dbSNP
rs1032357647 1257 dbSNP
rs768023403 1264 dbSNP
rs971958559 1267 dbSNP
rs1313849972 1285 dbSNP
rs531639413 1286 dbSNP
rs999576840 1289 dbSNP
rs1013283653 1298 dbSNP
rs762502167 1301 dbSNP
rs959075256 1305 dbSNP
rs1299837788 1314 dbSNP
rs1317454641 1316 dbSNP
rs1384382488 1317 dbSNP
rs1161896081 1318 dbSNP
rs1446729512 1321 dbSNP
rs1033396820 1323 dbSNP
rs1181225357 1324 dbSNP
rs1436187671 1326 dbSNP
rs1225071175 1327 dbSNP
rs1000909623 1328 dbSNP
rs1196902690 1329 dbSNP
rs560180847 1335 dbSNP
rs1323947497 1342 dbSNP
rs376967717 1343 dbSNP
rs1434192228 1345 dbSNP
rs1219783038 1346 dbSNP
rs1337028310 1346 dbSNP
rs902603458 1355 dbSNP
rs1284243122 1356 dbSNP
rs1064437 1375 dbSNP
rs766090692 1376 dbSNP
rs1041274415 1379 dbSNP
rs1308974239 1386 dbSNP
rs1410425447 1391 dbSNP
rs943919540 1393 dbSNP
rs1301112053 1394 dbSNP
rs1426746264 1394 dbSNP
rs889686775 1399 dbSNP
rs1050953402 1403 dbSNP
rs1058311 1413 dbSNP
rs932478244 1414 dbSNP
rs542085383 1415 dbSNP
rs147148949 1416 dbSNP
rs764938566 1416 dbSNP
rs1178114591 1419 dbSNP
rs1045426698 1430 dbSNP
rs1430422446 1440 dbSNP
rs919562410 1443 dbSNP
rs372359194 1445 dbSNP
rs1234680509 1456 dbSNP
rs1204188916 1460 dbSNP
rs908568118 1475 dbSNP
rs538158032 1481 dbSNP
rs1228904956 1482 dbSNP
rs574523413 1494 dbSNP
rs1281328102 1495 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462573. RNA binding protein: AGO2. Condition:TZM-bl BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucUGGUUCGGAGGAAGGGa 5'
               ||  |  ||||||||| 
Target 5' --cccACACACACUCCUUCCCc 3'
1 - 20
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462573
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl BaL
Location of target site ENST00000263980.3 | 3UTR | CCCACACACACUCCUUCCCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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