pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TLE3   
Synonyms ESG, ESG3, GRG3, HsT18976
Description transducin like enhancer of split 3
Transcript NM_001105192   
Other Transcripts NM_005078 , NM_020908   
Expression
Putative miRNA Targets on TLE3
3'UTR of TLE3
(miRNA target sites are highlighted)
>TLE3|NM_001105192|3'UTR
   1 ACAAGAACTCCAGCAGGGCTGTCAAACTCTGGGAGAAACCGACTCGGCTCTGACAGGGAGACCCCCAGGCGAGGGGCCCC
  81 GAGGATGGCGGAGGATGGGCCGCAGGCAGCCGAGCGTTCAGGGCTGCGCTCCGGCCGGCTGAGAGGGCACGTGCCCCGTC
 161 ACAGTCTGGACTCCTGGGCCTGGATTGATGTGTCTCACAGACTCGGAAGGGTTCTGCTCCTCCTCCTCCCCCTGAACAAT
 241 GCTGGCAGTTGCTACAAATAGATTTATTGGAGGCTTATGGCTCCGGTTCCCCCACAGACCCGCTCATGAGTCTCTGTTTG
 321 TTCTTCCCTTTTCTTTTGCCCTGTCCCTCACCTTGGGTCGGGGGTGCTGGAGTGGACCACAATGTTGTGCTGGGGGATGG
 401 GGGGGTCTCTCTTTGCCGATTGTGCAGTGCACAAGATTTGTGAAAAATGTAAATAACAGACTCCTATTGCGGACTGATCA
 481 GTGGGAGAGGAGGCCCCTTCCCACCGGAAACTCTGAGTGTGTATTTCGCCTGCTGTATTTGTAATCCACTCGTGGTGGTG
 561 GCTTTTTTTTTTTTTTTTTTTTAAATAAACAGATGCTCTCACCTGGGAAGAGGAGACAGGGAGGGGAACCAATTGAAGAA
 641 AGAGGAGAAAAGTCTTAGAGTGTGGAAAAGGCAACCAGGTTGGCCGTAAGGTGCCTGCTGGAATGCGTGTGCCTCCACAC
 721 GGGTCTGGGCATCCGGACTGATAACCAGCCGGCCAGACTGAGGGATGGAAGGCACTGAGATGGGGGCCCGTCCAGGCGGA
 801 CACCCGCAGAAATGGAGCTTTCTGTGGTCTCTTGCACTCTGGCTGCCTCTTGCCCTCTCTGTGTCTCTCTTTCTTGGTCT
 881 CTCCCTCTCTCCTCCTCAGCCTGGTCTTTCTCTTTGGTGCACACTTAGTTATTGTTGTGAGCAATGGAAGTTCAAAGGAA
 961 CTCCCTCTCCAGCTCTTCTGAATCTTGGGACACAGCCTAAAAAGGACAAAAAGTTAGAAGACAGCATAGCAACTCAGCTC
1041 AGGGAGCTACCAGAGAAAAATAGCAACTGATGTGGGTGCTTTTTTTTTTTTTTTAATTTGAATAAAAAGAATTAGAAGTG
1121 ATGTCCTTTTATAAAATGCCTTCTCCCCCTTCCCGCCTACAGTCTCTTCCTCTCCCCTTAGAGGGGGGAAAGTGTATAAA
1201 CCTACAGGGTTGTGAGTCTGAAAAGAGGATCCCCCTCACCCCCACCCTGGGCAGAGCAGTGGGGGTTGGGGGGTGGGAGA
1281 GGGGGACACAGATCCTGGCACACTGTGGATATTTCTTGCAGATTGCAGTCTCTTGTGGCCCAAACAGGTTAGGTAGACTA
1361 TCGCCTCTGGCAGGTGCCACCTTTTGGTACCAACATGTTCTGAGGTGTTAGGATTTGGGTTGGGTTTTTTTTGTTTGTTT
1441 TTTTTTTCCTTTTGGTCTTTTTTTTTTTCTCCTTTTAAAGAAAAGCTAAAGGCCGCTGTGAGTCCTGGTGGCAGGCTCTC
1521 CATGGATGTAGCATATCGAAGATAATTTTTATACTGCATTTTTATGGATTATTTTGTAATGTGTGATTCCGTCTGCTGAG
1601 GAGGTGGGAGGGGCTCCAGGGAAAGCCACCCACCTTCAGTGAGGTTGCTCCCCAGCTGAGCGCACCGGGCATGGGATGTG
1681 GAGGCTGGCGACACACCCTGTGCCTCTCCAAGGCTGGGCGCGTGGGGCGTCCAGAGTCTCTCTGGGTCTCAGATGTCCAT
1761 CTGCCACCTCTTGTTAAGGCTCTAGCCAGAAGGGAGGGTGAGGGTAGAAGAAAGTTATTCCCGAAGAAAAAAAGAATGAA
1841 AAGTCATTGTACTGAACTGTTTTTATATTTTTAAAAGTTACTATTTAAAGGTTGGTTTGATTGTTGCGTCTTAATTGCCT
1921 CTCCCCCCAGTTTGCCAGTCCCGCCCCCCGCCCCCCGGGAAAACAGCCAGGCCACTGTTGCTGTCACATTCTGGAGCCTG
2001 GGCCAGGGCCATTTCCCATCGATGTGAGCTCTTCTCATCTCACAGCATTCCCTGCGCTGCTTCCACCCCCTTCTCCCCTT
2081 CCAGATACCCAGCATCGCAGCAGGGATTTCACAATCCCATACTGTGTCGCCTCCCATCCAAGCGCCAGGGAGGGTGGGGG
2161 GTAGGAGCTAAGACTTCCTCTGGACAGATGGGCAGGGCAGAGTTCACTGAGGTGAAGGAAGACCACAGGTTAACACCAAA
2241 GTATTGTACAGCTGTCAATGCAAAACTTTTTTGGAAAAAAATTAAACGTAATGAACTTGAAGCGAAAAAAAAAAAAAAAA
2321 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gguAGA-AGGA--AGUCGGAg 5'
             ||| ||||  ||||||| 
Target 5' cccTCTCTCCTCCTCAGCCTg 3'
883 - 903 157.00 -16.90
2
miRNA  3' gguagaaggaaGUCGGAg 5'
                     |||||| 
Target 5' atcttgggacaCAGCCTa 3'
982 - 999 120.00 -9.60
3
miRNA  3' gguAGAAGG-AAGUCGGAg 5'
             |:|||| ||::|:|| 
Target 5' tttTTTTCCTTTTGGTCTt 3'
1441 - 1459 115.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN13636277 22 COSMIC
COSN26632933 29 COSMIC
COSN30154673 37 COSMIC
COSN30463301 45 COSMIC
COSN30147744 49 COSMIC
COSN30499115 63 COSMIC
COSN30475963 65 COSMIC
COSN31611747 70 COSMIC
COSN20042247 71 COSMIC
COSN26998664 101 COSMIC
COSN23854953 429 COSMIC
COSN15661867 449 COSMIC
COSN4762957 452 COSMIC
COSN25285926 471 COSMIC
COSN32057975 505 COSMIC
COSN24566973 715 COSMIC
COSN4762956 749 COSMIC
COSN6279099 790 COSMIC
COSN1179580 1244 COSMIC
COSN26694564 1254 COSMIC
COSN32058472 1424 COSMIC
COSN20112220 1437 COSMIC
COSN20112221 1438 COSMIC
COSN7247522 1467 COSMIC
COSN21147881 2031 COSMIC
COSN29572086 2119 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1349563378 1 dbSNP
rs1186298917 2 dbSNP
rs764433029 5 dbSNP
rs1407182317 10 dbSNP
rs562099951 11 dbSNP
rs888595782 13 dbSNP
rs775873346 14 dbSNP
rs1235267561 17 dbSNP
rs765850464 18 dbSNP
rs776882640 23 dbSNP
rs762584296 24 dbSNP
rs1179703118 27 dbSNP
rs1215070553 29 dbSNP
rs1488348117 32 dbSNP
rs772951831 38 dbSNP
rs1261833163 39 dbSNP
rs142391489 40 dbSNP
rs747847827 41 dbSNP
rs371314649 43 dbSNP
rs372260637 45 dbSNP
rs957874257 46 dbSNP
rs746908911 50 dbSNP
rs1378057260 54 dbSNP
rs923794535 57 dbSNP
rs1040986548 62 dbSNP
rs79517073 70 dbSNP
rs766008979 71 dbSNP
rs1030255854 72 dbSNP
rs866753991 77 dbSNP
rs531857400 80 dbSNP
rs1042266465 81 dbSNP
rs1305900938 87 dbSNP
rs1374870779 88 dbSNP
rs945330589 89 dbSNP
rs1450711643 90 dbSNP
rs71393476 95 dbSNP
rs546554296 101 dbSNP
rs1172203752 102 dbSNP
rs1469305572 103 dbSNP
rs34658999 105 dbSNP
rs577289858 107 dbSNP
rs926389574 110 dbSNP
rs750965360 111 dbSNP
rs1395036828 112 dbSNP
rs970369566 115 dbSNP
rs765831865 116 dbSNP
rs1353048804 117 dbSNP
rs1441715135 118 dbSNP
rs1474712007 120 dbSNP
rs561444036 127 dbSNP
rs1194449108 128 dbSNP
rs906757776 130 dbSNP
rs983009747 131 dbSNP
rs554795369 132 dbSNP
rs1027534775 133 dbSNP
rs997029654 136 dbSNP
rs368309998 137 dbSNP
rs1019642218 147 dbSNP
rs1008288355 148 dbSNP
rs555227476 150 dbSNP
rs191028358 151 dbSNP
rs576189698 157 dbSNP
rs893724841 158 dbSNP
rs929407302 163 dbSNP
rs1356431119 164 dbSNP
rs1016370102 170 dbSNP
rs1353188703 188 dbSNP
rs937851359 198 dbSNP
rs1312336652 199 dbSNP
rs547935733 204 dbSNP
rs1417136848 206 dbSNP
rs981839379 213 dbSNP
rs1339171793 214 dbSNP
rs187356764 217 dbSNP
rs950564529 219 dbSNP
rs1209607967 221 dbSNP
rs1257570502 225 dbSNP
rs181901383 227 dbSNP
rs1026068985 229 dbSNP
rs949134605 230 dbSNP
rs994263529 231 dbSNP
rs527888346 232 dbSNP
rs982454087 239 dbSNP
rs1475621974 241 dbSNP
rs1025158318 242 dbSNP
rs1421991320 253 dbSNP
rs1433089211 257 dbSNP
rs80167401 284 dbSNP
rs775635307 285 dbSNP
rs369978895 289 dbSNP
rs1326293811 290 dbSNP
rs1431998105 292 dbSNP
rs190078083 293 dbSNP
rs1368388865 294 dbSNP
rs936688376 295 dbSNP
rs1280542070 300 dbSNP
rs548020928 301 dbSNP
rs902562685 302 dbSNP
rs1447501088 306 dbSNP
rs531918642 314 dbSNP
rs1453519335 316 dbSNP
rs933115296 316 dbSNP
rs1483697354 318 dbSNP
rs373282496 323 dbSNP
rs923121294 323 dbSNP
rs1202123786 333 dbSNP
rs1439526425 334 dbSNP
rs1401759547 345 dbSNP
rs1258562838 346 dbSNP
rs1232168753 356 dbSNP
rs1008236157 359 dbSNP
rs903282867 360 dbSNP
rs562970459 364 dbSNP
rs1303702188 372 dbSNP
rs552876928 382 dbSNP
rs984825971 387 dbSNP
rs1278442174 389 dbSNP
rs1011574147 394 dbSNP
rs1372131947 396 dbSNP
rs1297986291 397 dbSNP
rs893160022 399 dbSNP
rs1053696888 401 dbSNP
rs1467870906 404 dbSNP
rs1214022883 405 dbSNP
rs10692075 406 dbSNP
rs1253929066 406 dbSNP
rs545091144 406 dbSNP
rs1470528056 410 dbSNP
rs1160836006 411 dbSNP
rs1416247226 413 dbSNP
rs1326982931 415 dbSNP
rs981177113 415 dbSNP
rs1002554422 417 dbSNP
rs532874628 418 dbSNP
rs1327709097 419 dbSNP
rs1403091931 431 dbSNP
rs1332561506 439 dbSNP
rs745943266 446 dbSNP
rs905003898 453 dbSNP
rs1025128594 457 dbSNP
rs372614752 458 dbSNP
rs895347734 465 dbSNP
rs1489615005 466 dbSNP
rs1167152025 467 dbSNP
rs1250038968 469 dbSNP
rs560480777 470 dbSNP
rs531726474 471 dbSNP
rs148805988 484 dbSNP
rs1047293607 491 dbSNP
rs879017761 495 dbSNP
rs1001243657 496 dbSNP
rs930988809 501 dbSNP
rs919607766 503 dbSNP
rs7169512 505 dbSNP
rs561416110 506 dbSNP
rs1213066055 512 dbSNP
rs767330483 515 dbSNP
rs1354780563 516 dbSNP
rs1491327095 516 dbSNP
rs1415295415 519 dbSNP
rs1467062150 520 dbSNP
rs1274558531 521 dbSNP
rs1295003033 522 dbSNP
rs1042476007 527 dbSNP
rs867130078 528 dbSNP
rs1250986437 534 dbSNP
rs1340306430 535 dbSNP
rs370225822 551 dbSNP
rs967557536 553 dbSNP
rs1020317702 554 dbSNP
rs1222437012 558 dbSNP
rs1379647491 561 dbSNP
rs1278243643 562 dbSNP
rs201500861 562 dbSNP
rs901667086 580 dbSNP
rs1189309423 581 dbSNP
rs62973861 582 dbSNP
rs11324999 583 dbSNP
rs1192903678 583 dbSNP
rs1237828032 583 dbSNP
rs1373356178 583 dbSNP
rs1427122990 583 dbSNP
rs1431216158 583 dbSNP
rs398027812 583 dbSNP
rs56993633 583 dbSNP
rs752685243 583 dbSNP
rs769203034 583 dbSNP
rs780088210 583 dbSNP
rs1440869452 584 dbSNP
rs1491343981 584 dbSNP
rs61999925 585 dbSNP
rs1211613665 586 dbSNP
rs1258347510 586 dbSNP
rs943222210 586 dbSNP
rs1204953347 587 dbSNP
rs1451663206 590 dbSNP
rs1191398546 591 dbSNP
rs534603669 592 dbSNP
rs1177591422 593 dbSNP
rs1343431704 598 dbSNP
rs1452931829 604 dbSNP
rs1289282088 613 dbSNP
rs1012103318 614 dbSNP
rs909091087 618 dbSNP
rs957376213 628 dbSNP
rs1370509179 632 dbSNP
rs1235202787 641 dbSNP
rs1303454680 650 dbSNP
rs1238983862 653 dbSNP
rs562880674 653 dbSNP
rs1048986536 658 dbSNP
rs1466535880 658 dbSNP
rs1034783019 668 dbSNP
rs928943668 669 dbSNP
rs918947811 671 dbSNP
rs375438747 672 dbSNP
rs1421104708 674 dbSNP
rs1380725837 675 dbSNP
rs1468641235 677 dbSNP
rs576155772 685 dbSNP
rs371847423 686 dbSNP
rs1254770596 688 dbSNP
rs184834592 690 dbSNP
rs971154687 697 dbSNP
rs1459729677 703 dbSNP
rs918083500 703 dbSNP
rs905119875 705 dbSNP
rs1046226176 706 dbSNP
rs1258419110 707 dbSNP
rs1394075816 712 dbSNP
rs181158923 713 dbSNP
rs188584866 715 dbSNP
rs553697894 716 dbSNP
rs931071452 720 dbSNP
rs542679272 721 dbSNP
rs780878597 722 dbSNP
rs1272911675 732 dbSNP
rs529660630 734 dbSNP
rs901886478 735 dbSNP
rs912810862 736 dbSNP
rs1303984178 741 dbSNP
rs1177258248 743 dbSNP
rs987046816 747 dbSNP
rs1007779533 749 dbSNP
rs144383829 750 dbSNP
rs554628036 751 dbSNP
rs1361359247 753 dbSNP
rs1406835685 756 dbSNP
rs1167177391 761 dbSNP
rs149469374 762 dbSNP
rs990226810 763 dbSNP
rs957700839 766 dbSNP
rs1352911578 775 dbSNP
rs766035854 783 dbSNP
rs974018211 784 dbSNP
rs1293162577 785 dbSNP
rs1001945740 789 dbSNP
rs915632789 790 dbSNP
rs1176777319 796 dbSNP
rs751184326 797 dbSNP
rs183913737 800 dbSNP
rs1013539464 805 dbSNP
rs886915272 806 dbSNP
rs1484374635 809 dbSNP
rs925501825 810 dbSNP
rs191381418 817 dbSNP
rs1473665083 821 dbSNP
rs1256289136 828 dbSNP
rs1417725445 830 dbSNP
rs967023968 835 dbSNP
rs1021217807 842 dbSNP
rs1372512876 849 dbSNP
rs1432902269 852 dbSNP
rs1210637672 855 dbSNP
rs1346242169 858 dbSNP
rs1258134059 859 dbSNP
rs1312810691 859 dbSNP
rs995231926 860 dbSNP
rs898240154 861 dbSNP
rs1234653878 865 dbSNP
rs1268756588 865 dbSNP
rs1307404554 869 dbSNP
rs1360900204 869 dbSNP
rs997485983 870 dbSNP
rs1039493315 871 dbSNP
rs966049244 871 dbSNP
rs188951221 873 dbSNP
rs1007668792 878 dbSNP
rs1444064625 879 dbSNP
rs1213438221 881 dbSNP
rs532809120 885 dbSNP
rs1475591353 889 dbSNP
rs779782177 892 dbSNP
rs887594804 892 dbSNP
rs890820316 895 dbSNP
rs559393505 898 dbSNP
rs1403589803 900 dbSNP
rs946319807 904 dbSNP
rs1057515 910 dbSNP
rs1057516 912 dbSNP
rs1172911195 919 dbSNP
rs913372111 920 dbSNP
rs990732948 924 dbSNP
rs1461461768 928 dbSNP
rs1045636348 931 dbSNP
rs769641089 932 dbSNP
rs1371216299 938 dbSNP
rs1322149899 939 dbSNP
rs936061324 943 dbSNP
rs894168082 944 dbSNP
rs1274896625 950 dbSNP
rs1347105427 953 dbSNP
rs1055937452 957 dbSNP
rs554578198 959 dbSNP
rs1185443709 961 dbSNP
rs658939 963 dbSNP
rs1465187489 969 dbSNP
rs749937536 972 dbSNP
rs530080303 978 dbSNP
rs1250207222 980 dbSNP
rs1467285497 983 dbSNP
rs1193141840 984 dbSNP
rs971376674 991 dbSNP
rs368389316 995 dbSNP
rs979583513 997 dbSNP
rs765890642 999 dbSNP
rs1258761067 1005 dbSNP
rs1201341681 1006 dbSNP
rs992045552 1007 dbSNP
rs1479023897 1008 dbSNP
rs1157340733 1009 dbSNP
rs1480611457 1012 dbSNP
rs1250054400 1013 dbSNP
rs1407817236 1016 dbSNP
rs1458146071 1018 dbSNP
rs1220556788 1024 dbSNP
rs1318767424 1029 dbSNP
rs945532972 1030 dbSNP
rs1323757341 1032 dbSNP
rs1332349572 1044 dbSNP
rs1292744215 1063 dbSNP
rs561144937 1066 dbSNP
rs951381078 1069 dbSNP
rs976352607 1070 dbSNP
rs1342459560 1072 dbSNP
rs541183993 1074 dbSNP
rs1390562330 1075 dbSNP
rs1333819574 1079 dbSNP
rs1209502142 1080 dbSNP
rs78545270 1081 dbSNP
rs80196193 1082 dbSNP
rs1394268197 1094 dbSNP
rs1017635363 1095 dbSNP
rs1161892408 1095 dbSNP
rs1179731485 1095 dbSNP
rs1453410952 1095 dbSNP
rs1473189046 1095 dbSNP
rs75524903 1095 dbSNP
rs777326176 1095 dbSNP
rs1333354488 1096 dbSNP
rs61999924 1099 dbSNP
rs1393154933 1100 dbSNP
rs1162144831 1101 dbSNP
rs1163486345 1106 dbSNP
rs1392362592 1108 dbSNP
rs1407773827 1109 dbSNP
rs1327564161 1110 dbSNP
rs952203628 1111 dbSNP
rs185486701 1116 dbSNP
rs1291316095 1119 dbSNP
rs993311978 1124 dbSNP
rs1245169668 1131 dbSNP
rs1266317022 1133 dbSNP
rs754325246 1136 dbSNP
rs562295466 1139 dbSNP
rs1194193702 1142 dbSNP
rs1273986001 1148 dbSNP
rs897681694 1150 dbSNP
rs1185018331 1152 dbSNP
rs545590418 1154 dbSNP
rs898361691 1155 dbSNP
rs1188664081 1157 dbSNP
rs1369907655 1161 dbSNP
rs1474208431 1169 dbSNP
rs1166907403 1176 dbSNP
rs576667222 1178 dbSNP
rs1431032072 1183 dbSNP
rs1236716365 1185 dbSNP
rs1006619270 1186 dbSNP
rs1458581945 1187 dbSNP
rs1055503409 1189 dbSNP
rs536275598 1189 dbSNP
rs1396455147 1192 dbSNP
rs192927725 1194 dbSNP
rs139401654 1196 dbSNP
rs147381770 1205 dbSNP
rs946269342 1208 dbSNP
rs1297096338 1209 dbSNP
rs1342968329 1210 dbSNP
rs1207311738 1211 dbSNP
rs892047280 1219 dbSNP
rs1483208023 1222 dbSNP
rs1201434729 1224 dbSNP
rs1427064667 1225 dbSNP
rs1487503202 1229 dbSNP
rs1041872467 1230 dbSNP
rs1333836839 1231 dbSNP
rs571308875 1232 dbSNP
rs367705933 1234 dbSNP
rs528782355 1236 dbSNP
rs1304468090 1240 dbSNP
rs758988858 1240 dbSNP
rs936161369 1243 dbSNP
rs1381376837 1251 dbSNP
rs1406538415 1261 dbSNP
rs927514889 1262 dbSNP
rs980166536 1263 dbSNP
rs950123853 1265 dbSNP
rs1451170356 1266 dbSNP
rs1378897012 1268 dbSNP
rs1234638941 1269 dbSNP
rs3195776 1270 dbSNP
rs986111278 1270 dbSNP
rs574347761 1271 dbSNP
rs554285655 1272 dbSNP
rs1027714558 1273 dbSNP
rs1178146977 1274 dbSNP
rs1361939184 1274 dbSNP
rs1456565957 1275 dbSNP
rs972145809 1280 dbSNP
rs1389716289 1281 dbSNP
rs961839677 1282 dbSNP
rs950785853 1283 dbSNP
rs1366996690 1286 dbSNP
rs1387363155 1290 dbSNP
rs918490229 1292 dbSNP
rs958607404 1293 dbSNP
rs1228205680 1295 dbSNP
rs974045304 1299 dbSNP
rs1269137135 1301 dbSNP
rs1331612354 1305 dbSNP
rs1034686704 1308 dbSNP
rs663517 1311 dbSNP
rs904207094 1315 dbSNP
rs538719444 1321 dbSNP
rs1472208166 1325 dbSNP
rs1006566894 1336 dbSNP
rs754776321 1337 dbSNP
rs558734624 1339 dbSNP
rs1010020661 1341 dbSNP
rs539229549 1347 dbSNP
rs1040605480 1354 dbSNP
rs774384473 1358 dbSNP
rs1349499126 1359 dbSNP
rs1010316256 1360 dbSNP
rs1301088388 1361 dbSNP
rs891496452 1362 dbSNP
rs1051133666 1363 dbSNP
rs1316979596 1365 dbSNP
rs1289483220 1371 dbSNP
rs1352720771 1374 dbSNP
rs1055105217 1380 dbSNP
rs1000478569 1393 dbSNP
rs28694338 1395 dbSNP
rs1160855456 1400 dbSNP
rs1321948013 1405 dbSNP
rs1223187429 1407 dbSNP
rs1341880860 1413 dbSNP
rs906004721 1417 dbSNP
rs1249092519 1418 dbSNP
rs771000537 1419 dbSNP
rs1395020732 1424 dbSNP
rs1474134127 1425 dbSNP
rs76700928 1426 dbSNP
rs1413392821 1427 dbSNP
rs917332294 1429 dbSNP
rs1278417231 1433 dbSNP
rs374535045 1433 dbSNP
rs370550810 1437 dbSNP
rs1192500952 1438 dbSNP
rs1446374226 1438 dbSNP
rs1491291828 1438 dbSNP
rs1491587704 1439 dbSNP
rs1265529903 1440 dbSNP
rs1294859559 1440 dbSNP
rs1000546113 1441 dbSNP
rs1034249254 1441 dbSNP
rs968403055 1441 dbSNP
rs1019997931 1445 dbSNP
rs1343212192 1446 dbSNP
rs11072133 1447 dbSNP
rs139167120 1448 dbSNP
rs1449002631 1448 dbSNP
rs531097533 1448 dbSNP
rs71794409 1448 dbSNP
rs1169301028 1452 dbSNP
rs1392618015 1454 dbSNP
rs1217083445 1456 dbSNP
rs1413247098 1463 dbSNP
rs530340880 1467 dbSNP
rs1276234565 1468 dbSNP
rs1228549222 1469 dbSNP
rs1450561229 1469 dbSNP
rs900883970 1469 dbSNP
rs1299150324 1470 dbSNP
rs1414922360 1471 dbSNP
rs1220910841 1472 dbSNP
rs1218607441 1485 dbSNP
rs1040825580 1491 dbSNP
rs1313755953 1492 dbSNP
rs781126370 1494 dbSNP
rs567607714 1495 dbSNP
rs1464592075 1496 dbSNP
rs1427991370 1498 dbSNP
rs1250007843 1500 dbSNP
rs1477060366 1502 dbSNP
rs1047875638 1505 dbSNP
rs889306000 1506 dbSNP
rs1426465210 1508 dbSNP
rs761206398 1512 dbSNP
rs1416578294 1518 dbSNP
rs929284781 1519 dbSNP
rs1298365203 1520 dbSNP
rs1050685509 1523 dbSNP
rs1375264591 1525 dbSNP
rs1332584552 1537 dbSNP
rs550701908 1538 dbSNP
rs974373103 1546 dbSNP
rs1167417454 1559 dbSNP
rs1435056927 1564 dbSNP
rs1476850563 1580 dbSNP
rs1425860816 1590 dbSNP
rs962671299 1591 dbSNP
rs1226390439 1594 dbSNP
rs1267240241 1595 dbSNP
rs940700865 1596 dbSNP
rs569794353 1602 dbSNP
rs530979647 1608 dbSNP
rs1211910784 1614 dbSNP
rs985263845 1621 dbSNP
rs955247556 1629 dbSNP
rs1198238560 1632 dbSNP
rs1442966979 1633 dbSNP
rs1479276937 1639 dbSNP
rs565028529 1643 dbSNP
rs1272121669 1650 dbSNP
rs138852351 1661 dbSNP
rs545132155 1662 dbSNP
rs556093838 1666 dbSNP
rs955881477 1667 dbSNP
rs768336607 1669 dbSNP
rs1000819598 1671 dbSNP
rs537793055 1672 dbSNP
rs969081120 1674 dbSNP
rs1376457869 1677 dbSNP
rs1407949386 1683 dbSNP
rs906114986 1689 dbSNP
rs535883705 1690 dbSNP
rs1014422554 1694 dbSNP
rs896014453 1695 dbSNP
rs746812573 1696 dbSNP
rs1281556532 1698 dbSNP
rs559937546 1702 dbSNP
rs1354466673 1705 dbSNP
rs965055683 1707 dbSNP
rs929424789 1714 dbSNP
rs1019351621 1716 dbSNP
rs920563288 1717 dbSNP
rs1037716406 1719 dbSNP
rs369705429 1720 dbSNP
rs777235128 1721 dbSNP
rs146014797 1722 dbSNP
rs1472248693 1725 dbSNP
rs899388079 1727 dbSNP
rs985378563 1728 dbSNP
rs933815187 1729 dbSNP
rs1183383379 1735 dbSNP
rs1307402550 1736 dbSNP
rs1371081426 1738 dbSNP
rs779908485 1741 dbSNP
rs370214333 1743 dbSNP
rs1339599017 1745 dbSNP
rs1244373849 1753 dbSNP
rs1284931330 1757 dbSNP
rs376459734 1758 dbSNP
rs955830784 1763 dbSNP
rs940669956 1766 dbSNP
rs377451123 1769 dbSNP
rs11540323 1770 dbSNP
rs758099632 1771 dbSNP
rs1197977998 1777 dbSNP
rs543863707 1794 dbSNP
rs1254541635 1804 dbSNP
rs1442169528 1807 dbSNP
rs1187824525 1809 dbSNP
rs1057132833 1815 dbSNP
rs937459123 1816 dbSNP
rs376180218 1818 dbSNP
rs978446668 1819 dbSNP
rs969744323 1822 dbSNP
rs1258169819 1823 dbSNP
rs1390759061 1823 dbSNP
rs1212478730 1824 dbSNP
rs1319561502 1826 dbSNP
rs1023208754 1828 dbSNP
rs1014537298 1832 dbSNP
rs1401239717 1833 dbSNP
rs371645223 1834 dbSNP
rs913125955 1834 dbSNP
rs947248319 1834 dbSNP
rs895963516 1840 dbSNP
rs750064021 1846 dbSNP
rs1424492860 1854 dbSNP
rs1380437376 1857 dbSNP
rs1296938158 1860 dbSNP
rs1308947127 1862 dbSNP
rs1230304106 1878 dbSNP
rs993955828 1881 dbSNP
rs1254706608 1882 dbSNP
rs1445275877 1892 dbSNP
rs1379692563 1894 dbSNP
rs899251484 1895 dbSNP
rs575353417 1896 dbSNP
rs1332160601 1899 dbSNP
rs1457412880 1901 dbSNP
rs1038231668 1902 dbSNP
rs1466419385 1903 dbSNP
rs1178285698 1905 dbSNP
rs558673164 1907 dbSNP
rs965028604 1908 dbSNP
rs1320097024 1921 dbSNP
rs889145313 1922 dbSNP
rs3743309 1925 dbSNP
rs573438095 1927 dbSNP
rs1265410449 1930 dbSNP
rs985223961 1930 dbSNP
rs1207716170 1938 dbSNP
rs1407045301 1942 dbSNP
rs1176494035 1943 dbSNP
rs1441502277 1944 dbSNP
rs1201439909 1945 dbSNP
rs75902277 1945 dbSNP
rs1192485212 1949 dbSNP
rs1026741335 1950 dbSNP
rs1346002309 1950 dbSNP
rs536902543 1951 dbSNP
rs540119946 1951 dbSNP
rs1390042081 1954 dbSNP
rs1387889279 1956 dbSNP
rs1349028886 1957 dbSNP
rs769037635 1957 dbSNP
rs1005122746 1958 dbSNP
rs762654710 1958 dbSNP
rs1221898207 1959 dbSNP
rs1318319193 1960 dbSNP
rs1218804946 1964 dbSNP
rs1315935752 1964 dbSNP
rs1285775981 1965 dbSNP
rs933930231 1966 dbSNP
rs1356471201 1968 dbSNP
rs1239515412 1973 dbSNP
rs1224639018 1981 dbSNP
rs748458458 1981 dbSNP
rs1310559243 1983 dbSNP
rs566683769 1990 dbSNP
rs988661545 1991 dbSNP
rs528024012 1993 dbSNP
rs754309707 1996 dbSNP
rs1295341385 2000 dbSNP
rs551296978 2002 dbSNP
rs1409048428 2004 dbSNP
rs1360089923 2013 dbSNP
rs1162893744 2018 dbSNP
rs1367967874 2019 dbSNP
rs764657604 2020 dbSNP
rs756494601 2021 dbSNP
rs1375919683 2025 dbSNP
rs1226289813 2026 dbSNP
rs944101798 2035 dbSNP
rs1321810743 2037 dbSNP
rs1247519077 2041 dbSNP
rs377668355 2055 dbSNP
rs537035717 2056 dbSNP
rs1482113146 2064 dbSNP
rs960281313 2066 dbSNP
rs1026864908 2069 dbSNP
rs1165512390 2071 dbSNP
rs1388915883 2073 dbSNP
rs993672546 2076 dbSNP
rs1171688743 2093 dbSNP
rs753040056 2094 dbSNP
rs899368077 2096 dbSNP
rs1016331339 2097 dbSNP
rs1294792796 2108 dbSNP
rs1191217281 2112 dbSNP
rs1215091420 2113 dbSNP
rs1274954208 2117 dbSNP
rs1310278156 2119 dbSNP
rs114712014 2121 dbSNP
rs1260503581 2126 dbSNP
rs373728986 2128 dbSNP
rs1051731604 2129 dbSNP
rs933868217 2134 dbSNP
rs963502557 2137 dbSNP
rs528580419 2143 dbSNP
rs533021982 2144 dbSNP
rs559876118 2146 dbSNP
rs1175763619 2156 dbSNP
rs546483118 2158 dbSNP
rs1470767364 2159 dbSNP
rs199581038 2160 dbSNP
rs767768493 2161 dbSNP
rs1035954508 2162 dbSNP
rs960244751 2162 dbSNP
rs1271926438 2163 dbSNP
rs1365367202 2173 dbSNP
rs1001913066 2179 dbSNP
rs1263554237 2190 dbSNP
rs1325369779 2191 dbSNP
rs925808859 2194 dbSNP
rs1219818506 2203 dbSNP
rs1340138655 2206 dbSNP
rs1266410617 2214 dbSNP
rs905882445 2221 dbSNP
rs759783073 2225 dbSNP
rs1296650076 2231 dbSNP
rs1402082075 2232 dbSNP
rs1360978038 2234 dbSNP
rs1244376704 2240 dbSNP
rs1477316166 2241 dbSNP
rs1191079152 2258 dbSNP
rs1302019340 2267 dbSNP
rs1011700918 2273 dbSNP
rs575813187 2273 dbSNP
rs1042785458 2275 dbSNP
rs891631429 2282 dbSNP
rs1442312674 2284 dbSNP
rs547128617 2287 dbSNP
rs747462917 2288 dbSNP
rs561018975 2303 dbSNP
rs188536419 2304 dbSNP
rs1347178776 2306 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 7090.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggUAGAA--GGAAGUCGgag 5'
            :||||  :|||::|:   
Target 5' ugGUCUUUCUCUUUGGUgca 3'
3 - 22
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguAGAAGGA---AGUCGGAg 5'
             ||| |||   ||  ||| 
Target 5' --cUCUCCCUCUCUCCUCCUc 3'
1 - 19
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000558939.1 | 3UTR | CCUGGUCUUUCUCUUUGGUGCACACUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000558939.1 | 3UTR | CUCUCCCUCUCUCCUCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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