miRTarBase - #MIRT486622


—
pre-miRNA Information
pre-miRNA hsa-mir-3622a   
Genomic Coordinates chr8: 27701677 - 27701759
Description Homo sapiens miR-3622a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622a-3p
Sequence 50| UCACCUGACCUCCCAUGCCUGU |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 8 + 27701728 27229138, 28411194, 29165639 MiREDiBase
A-to-I 8 8 + 27701733 29233923 MiREDiBase
A-to-I 15 8 + 27701740 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs367834969 9 dbSNP
rs1444523018 11 dbSNP
rs551029921 14 dbSNP
rs569771074 15 dbSNP
rs13276615 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PDK3   
Synonyms CMTX6, GS1-358P8.4
Description pyruvate dehydrogenase kinase 3
Transcript NM_001142386   
Other Transcripts NM_005391   
Expression
Putative miRNA Targets on PDK3
3'UTR of PDK3
(miRNA target sites are highlighted)		 
>PDK3|NM_001142386|3'UTR
   1 AGGACTGAATGCTGTGGTCCTCTCTGTGAAGAAAGATTGCCTTCTGCAAGTCAAACAGAGAGAACTGCTTTCTCCCACCT
  81 GCTCTGAGCGTGGCATCACAGTTATTCCTAGTGCTTAAATGTGTATTTTCTCTCTACCACCTGGACTTTCCCAAAGAGTT
 161 TTTCCTGTAGCTACTCCAGATCTTCCACTAAAGTAGTAACTTTTTAATGACATCTTGCTGTGGTGTGATTGATGCCTGTC
 241 ACCGAAGAGCACAGAGCCTCCTTACAGCTCTTGTGCCCTCGTACTCTCCATCTTGTTATCATAGCATCTGATGTCTTCAG
 321 TCCTTCCAGGATTCTGTGCGCCTTTCCCATTCCAGATACAGCAGATCGTACTGTTGCTCCTTGTGACCAAATACCATATT
 401 TGTCCCAAACCTCCACCTAGGGCCCTGGGACCCTGAAAGTGGAAGACATCAGGTGGCCATGCCCTGATGATTTAGTCCCA
 481 GAGCCCTCCGTCTCTCCCGTGCCTCCCTCCGCCACTCTATGATTTAGACTTTTGCCTTCTTCCATCTGATCGGATTCTCA
 561 TTGTGAGATGTGGTGACTTTCATGTTAGATCTTCTTCATTGATGCCTTGGTTTTATTTTAAAATTCATTTGTATATGTCT
 641 GTTGATTAAAGCATTCGAAATGTTATCTTAGAATTTTTCACCCAACTGCTTGGTTTCAAAGATCTTAAGTGAAAAACTGC
 721 CTCCTGGTCAATACCAAATTTGTACAGAGTGTGAAGTGGAGTTTTTATGCTTCTGTCAAACTTCCATCCATCTAATACTG
 801 TACCTGTGTCATATTTTATTCCTTTGTAGTCTTCTAAGGAATTGGAAGTTTCTGTATGATGCGCTTTACTAGTTGTAAAA
 881 TAGACTATCAGAGGGAAAAGGCCTCTCTAGTTTATTTTTGAAAAATGCTCCAGGTCTTAATAATTTTCATTTTCATTCAT
 961 CTTAGTTTTAGAATTGTCACCTCAGTCTGATTTTCACAATCCTTTTTGCTAAAAGTTGGAAGTGGGAATTAGCAGACGAT
1041 TTGGGATAAGGAAAGAGGAATGATGTTATATTTACCCTTAGGAATAGAAGTGACCGAAGAATCCGGATTGAAACCAGCAT
1121 CCTATATACAGCTCCACAGGATGTGCTTCTCTTCATGGTAATTTTCCATATATATCATCTACTTTGATTTCTGCCCCGTT
1201 TTAATGTCCATATAAATGTTTCAGTCCAATTTGTAAGTGTTGAGTCCACTGATGTAGAAGTTCTGACTTGTAAACCATTC
1281 ATCCTGCTTTAGTCATATGATAGTACCGATGCAATTAGCTCCTCTCCCACCACCGTGGGGGATTTCTCCCTGAGATGAGG
1361 TGTGCTTTGACCAGCTGCATGTGGCTTGATTGCATTCCTGTTTCTCTTAGTTCCACTGGATCTTGTTTTCTTTTATTTCG
1441 TTATATTACCTGAGCTCAGGGTAGTTCCGTTCATCTTTAGAAAGAGCTCATCTCTTCCATCCTTAGAAGGATCTCATCAG
1521 AGAACTCATATGTAATCAATCAGGTAAAAGAAATACTGATGTACTTCTGAGAGACTGGTGAGAGGTGGGTCATAGGAAGC
1601 CCATAGGTCTGAGGACCGAGTCAGTGTCTTGGGGATGGGGCTGTTCCATATGATTATTTTTGTGTGGCATAAAAGATGTA
1681 AAAAAAAAAAAAAATGGTCCTTTACATGCAAAGACCCTAGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1761 TTTGAGACACAGTTTCACTCTGTCCCCTAGGCTGGAGTGCAGTGGCACCATCTCGGCTCACTGCAACCTCCGCCTCCCAG
1841 GTTCAAGCAATTCTTGTGCCTCAGCCTCCCGAATAGCTGGGATTACAGGCATGCACCACCACGCCCAGCTAGTTTTTGTA
1921 TTTTTTTGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGACCTACCCACCTCAG
2001 CCTCCCATAGTGCTGGGATTACAGGTTCGAGCCACTGCGCCCAGCCGACCCTAGCTTCCTTATAAACATGAGATAATATC
2081 TTCCTAGGCCTCAATTTCCAACGATACTCCTTTATGCTTTCAAGTGTGATACACTGTAGGAGAGAGGAGGCAGCAGTTTA
2161 GGGGGTGCTGCCTACTGCCTGACTCTGACAGCGTTTCTCTTGTTTGAGGAAGGCCCATCGATCACCACATCCTCACAAGC
2241 AGTACCATGTAAGGGGCCGAATATGGATAATATGGTGTAGAAAAATCTCATCACATTCTTCCCTTTACAAGTGTTTTTCA
2321 AAAGTAAAGATTGATTTCAGTGTCTTCATGACTTAATCGGTAGTTCTTTACTAGCACGCTTTTTGGCTTACTCACATCCA
2401 TCTGACCCCAGTACAACCTTGCTTCTCCTGTCTTTGTTTTCTTCATTAAGAATTTATCTTTAACCCTAAAGCAACTGCAA
2481 GAAGAGTTTCAGGAACATCTGTGTTCTTCTGGCTTACTAGCCTCTTTACCCAAGTATTCATTTATCCTGTTTGTCAACTG
2561 TACATGATTCTTTTAATTTAGGCAGAGAATCTGGCTGTTTACTGGGTTTGCCTATAAGCAAATGGTCAGATTTCCCCCAT
2641 ATAGGTTGTAACACAAATAGACATGGACCCTTTTTCAGCTAAATTCTTTCCCATTCCTCTGTACTGCTCTTTCATTTACT
2721 CTATTTTATTTTAAGTGGGGACTGTGTCTATTTAAAATAGTGCCTGACACATAGTAGGTGCTTAATAAACAATGTTAATA
2801 AATAATATTAAAATAATGAATAATATTCATAAATAGTAGGTGAATCAAAGATAGAAAACTGTCAGACATTTTCCTTGGGT
2881 GGTAGGGCAACATCTTTCTAAGTTCTTAAACCATCCTTGTCTCTAAATTAAAAATATGGAAGTTCAAGTCAGGAGCTGTG
2961 AAAGTGCTGAATTTCCTTTTTATAGTGCTAAGAGATGACTTTAAAATGTAGAGAAATGCAAGGAAGTGGAGGGATAGATC
3041 CGCAGGAGCCATCTCTTCCTTTTTTTGTCTCTGAATATCTGATTTTGGCTCCTGAATACAGAATTCTTTCCATCCAAACA
3121 GTGTGACATAGTTTTACAGCCTTGTGTATAGATTCCAAAGACCTTTTGCATACAGCATGCCATTTGATCCTTACAATGCC
3201 ATGAGCTGGACTACACAGGTATATCGGTTTTTTGTATGAATCCCAAAGCAATTAAGGAGTTTGCCAAGGTGGCATGGTAA
3281 GTCAATGGAAGGGCCAAAGCAAGCACTTGGGTGCTTGGAACAGTACGCCAGGTGATTTGTATTATCTCTTTTGAGGAATT
3361 TCTTCAGTATACTATTCCTCAAAGGGTAAGCTCTAAACCCCAAATTATCTGTAGAGCAAGTTAATTCCGTTCAGGAGAGG
3441 GTTTCTTTTGTGTGTTTCCATTTTGGCATAGTTAGAGGAGATAATCAGATGGATTTGGCAGCTTTTACCAAAAATGACAG
3521 GCAACTTAAAGTGGATAGCTGTAGGTAATTACTAGAGTTATTTAGACTTAATTCTGTGTCTGAATGAATTCAGTGCTTAC
3601 TGCCAGCCCTTTCATACAAAGACTCCACATTTGAGAGCTGATGTTTTTATCTTTTTTGCAGACTGGATTACAGCTTCGGT
3681 TGGGTTTTCTTGCATATTTACAAATGTATTCCTGTTGCTGTTACTTACGAACAATAACTTGGCTGGCTATCGGATTCTTG
3761 GATCACAGCCTTTTTCCTTGAATTCTCTGGAGACAGGATGTTATTGCTACTTTATGGTTGTCCATATCTGGTGGTGCTGA
3841 CAGGTCTGAGTCCTGATGGATTTTTCTTCCCCTTTTGTAGATGACCTGATTGTTTGCCCTGGATACTTGAATTCTTTGTT
3921 TATCCTTGAAATTTAGTAACTTCGTTGGAGTATATCTCAGGATTGACTGTTGTCTGTTGCCTTTTTCTGGAATGCAGTGA
4001 GCATTAGATATGGTCATTTCAAGCCTCACTGCGTTTTGTATCAGTTTAGTCTGTTCTCTTCTTGAAAACTTCATTTTTAT
4081 ATTGGCTCTCTGTCATCTGTCCTTCACAGTTATCTTTCCTTAGATGGCACTCATCTCATCTTTCTTCATTCATGCTGTAT
4161 GATTTTTTTCTCAAGTCTTATCCTCCATTTCACTGACTGACTCAGTTTTCTGTACTGTTGATTCTAGGGCTTGTTCCTTG
4241 TAATGTGGCTTCCACTTCTGTTACAGTTTTATTTATTTTATTTTATTTTATTTTATTTTTTTCAAGATAGTGTCTCACTC
4321 TGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCTGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTTCTGCC
4401 TCAGCCTCCTAAGTAGCTGGGACTACAGGCTTATGCCACCATGCCTGGCTAATTTTTGTATTTTAGTAGAGACAGGGTTT
4481 CACCATGTTGCCCAGGCTGGTCTCAAACTCCCGACCTCAAGTGATCCACCAGTCTCAGCCTCCCAAAGTTCTTGGATTAT
4561 AGGTGTGAGCCACCGCGCCCAGCCTAGTTTCATTTTTTATCTCTTTCTTTCCTGAGCTCATTATGTTGTCCTCTTTGATT
4641 GCGTATTTCTTCCAGTGCTGAACAATTTTGTCTACAGTTTTAGTGGTTTATGAGCTCATTCTTTTTCTAGAGTGTATTTA
4721 TCTATCCTTTGCATCTTTCATTCCTTTTCTTGTATTGTTTTGCTTTTATCTTGATGCACAAGTATCATGATGACCCCTTC
4801 TGCTTATTATTTATCTTTGCATGGTACCAGTTTTACCTGTCCAAGAAGAGTGTGGGTAAATCCTCCTTGACTCCTTCTCT
4881 TTTGAGCGAGACATGTTTGAAGGATAACCTTAGCACTTGAACCCTAAGGCTAGCTCTTGATGGGTTGTAGTGGTGGAGGG
4961 TGTTTTTGGTTTTCATTCTGTTTGGATTTGGGGGAATAAGGAGTGACACGAAGCCTCCTTGGAACATGTTGTCTGTGAGT
5041 GCCTTCCATAGACACTGTTGAATCCTCTGCCCTGGGGGTGGCCGGGTCCCATTGGGAGACAGATCCTCTTTGCATTTCCC
5121 CATTCCCACTAGTCGTCATCCTAGCAGGAACATGGTGGGTTTGTACTTCTGCCCTCCTGGATTCCATGTAGCCCACATTT
5201 GTGAGATCGGCTCCAGAGTTGGTTTCTCTCCTCTGGTCCTGCTTCTCGCCGCTCTTCCTCTTTTGGATACCGGAGGGGAT
5281 GAACACACATGGTTCATCTGAGATCTCAACCGCCTGTCCTCGTTTTTCTGGAAACATGCACGCGCAGAGTGTGCCCAGCT
5361 TCTCCCGACTGTTGCCAGTCCTGTTTTGCCAAGTTAACAAATGATCAGTAGAGTCTTGGGAATCTTCTCATTAACTGCCC
5441 AGCAGTTGTGGCTGCTGGAGACTCGGAGAAATGCCTGGCAAATGCAAGAACTCTTCTTCGATTCATCCCCAACTTGGTTG
5521 TATCTGTCAGACATTGCCCTGGAGTCCGTGGTATGGAGTTGTAGCTTTTACTAGTTTCATTATAGACAGCTTGTTGTTCA
5601 ACTTTTGGATGTGTGGGTCAGAGGGCAGGAGCACTTATATAAACATGCATTTATTCTGCCATCTTTTCAGCAGTCCAGAT
5681 GCTTAAACATTGACTTTGAAGCTAATGTCCTTCATAATCTACATTTGAGCAAACAGAAGGAAGCAATATTGCCAGCAAGA
5761 AAGGACGATTAACTTAATCAATACGGGATTTTTGTTTACTGTTCTGTGTGGAAAGATAACTTTTAAGTCAAGTTCCTGTC
5841 TCATTGATTAGAGATATCAGTACCTTCTGGTTTGAAAATAGAGGACATATGACATTTTAATGAACTTAAGTTATCAGCCA
5921 TTGACAATTATTAGTTAGCTGATTAAATATGATAGAATACTCCAAACTAGCACATCACCAGAGTTACCAAGAGACGCCTA
6001 AGCTCTTCTTTATGAACAGGTTGTTGGTGGAGCTGTGCCACTGAGGGGGTTAACATCTCTGACACCTTAACTGTGCCACA
6081 GGTTTTCTTACCTGTCTTTTCAATCAACCCATTTTAAAATTTAGTTCATCAAGAAAGAGAAAGGTGTTAAGTCTTCATCA
6161 GGATTCCTTTTGGTTTCTCATGAATACATATTCACATGGTTTGGAGACCTGGAGCCCACCACCAAAGCACACTGAGTTAA
6241 TGTTTTGAAAGTGCATTTGTAGGTAGATCCTGGGGCTGGGGTTTTATTTGGCCTGTTTGTAGAATTGAAGCCTCTTTGCC
6321 TCAGTGGTCAGCACATCCCACCAGACATCCGGCAGCAAGCTTTCGTCACCTTCAGAGCTCTAGCATAATGATAAAGGAGC
6401 ACTAGTGACAGCCTTGCTGTATGCACCAAGCTCCACCCTGGGCAGTGCCTTTCCCTAATGTCTGTCCTGGTGTGAAATGG
6481 AGACTTGAAGACCGGTACCCACATGTAAGAGAGGTTAACGAAGGGAGGGTGGCAGAGAGAGGAGTCATGTGAAGGAAAGC
6561 TACCTTTAGTCCTCCATCGCAATACTGTCCAGTGTCTCCAGCGTGCTAGAAACTGTGCTGAATGCTGGGCACATGGCAGG
6641 GGTCAAAGCAGACAGAAATCCCTGCCTCATGAACCCACTTTCTATTAGGGGAGACAGACTAGAAACACAAAAAGGACATT
6721 GAATAGTACGATTGAGAGATGAGTGCTATGGAGAAAAATCCAGCCAGAAAGGGAGATGCAGAAGATAGCACCAGATCTTC
6801 TCAATGTTGTTTTCATCATGGACAGGTGCGTTCCTTAGAAGATGAAGTGTTAGTGATTCCTGAGTTTTTCTCACCTTCAC
6881 GTCGATTGATCTGAATTTGGAGAGTCTGTTTTCTGTGTCTGGCTCTGCACTCAACTTTGTAGGGGACCCTGTCGAGGTCC
6961 CCACACTGTGGCTTCAGGTAGACAGAGCAGATGGGAGCCCATTTCAGTTCATTGTCTTGCTGACCAATGGGGAACTGTGG
7041 TCAGGTGAGAGGAGGCAGCTTTTACAATCAGACTTCATTGAATAGTGTGGGCTGCTGTTTCCTTGTAACAAAACCCCATA
7121 ATGATGGCAGTTTCCGGATGTGTCTTTTTAGGACTTCAGAACTTATTATTTGAATAGAAGTTTAAAGCATCTGGATGATG
7201 ATGCTGTAGCTAAAACAGCTGCTTGTCAGAAGAGACCCTATTTAACACTTCTAAACTTGTTTCAGAGGTGGAGGAAAGGA
7281 TAATCTGGGAAGGCCTCCCTCTCAAGTCCACAGGTTGGTATCAGCTGTGTTCATCCCCCAAAAGGAAAATAAAATGACAA
7361 CAATATTTTGGTCACAGAATTCCTGAGAAACCTCTGTTTCTATCTTCATGTCTTTAAGATAGGGACATGAATTCCCCATG
7441 ATCTGGGTGATAGGGTTAGGGTGGCCAGGACACTGTTACTTTGTGTGTGACACAGGTGGCTCCTCATGACAGTTCCTCCA
7521 TGCCTTAGAACATGTTGTCTGTCTGGTCATCCCTGGGGGTAGAGCTGAGTGACCCAGCAGTGGGAGATTTAACAACTGGA
7601 GAAGAAGATGGGATGTGTTTAATTATCCCCAGAGGTAGGGCCAATTTGTCACCCTTTAAATAGACTTATTTGCATATAAA
7681 CTAAAGCACCTTAGGGCATCATTACCGAAAGTGTCTAAGCAAATGTCTGATATAGTTACGTGCCTGCATTAAAAGAAAGC
7761 AGCCCCCTTATCTTGCCTTAATATCCTTACAGTGTTTTAATAAGTTCATAATGCATCCTGTATGTGCATTTTTTGGTATA
7841 AAACACCGAAAGGTGGAGAATTGACTTCAGTTCTCTCCATCCTTTCCCCTTAAGTGTTGGTGGCGCTGCAGGGGCAACGT
7921 GCCTCCCATTGGAAGTGGTGACTTCCTCTTTGATAGAGGTTTGCCTGTCTCTTGAAAATGAAAAGAAGCGGAGATTGATC
8001 TCTGGAGTCCCATGGTCCAGTTTGGACTATTGGGAATATTTTTTATGGGATGTTAAAAACAATATTAGAGACGTGAGATA
8081 GTAAATTTGTGGTAATACCGGATCCAGGAAGCTTACAGTGAAGAGTATGAACTTAACCTGAAAAGTATTTCTCTGTTCTA
8161 TAAATCTCTCAGTGACATTTGGATTAATCAAGCATAATTAAATGTAGTTAGATTTTTGTCAGATTGTAGTTCAAAATAAT
8241 ATTCATCTATGGAGAGGGTAATATATTATGTAGAAATTTTATTAAGCACTTTAGTTAAGCAAACACTAAGGAGAACAAAA
8321 TCAACCTCAGGAAGGTTAATTACTAAAAAAATCACAAAGTATAGTAGATTATGTAAATCATTTTAATTTTGAATACCATG
8401 GCTTGAGCTTTAATTTACATAGAGACGTATTTTGGATTTGTTTTTCACATTATATTTTCTAGTACAGGATTGCAATTGCA
8481 TTCTTGAAAAGTTCTACTCATTTTAGGATTCCATTAAGTTTGCTTAACTTTTTTCATGTTATAATTTCCAAAAGCAAAGA
8561 ATTACAATTGTATTCTAGCTAATTATTTTAATGTTTCACTAACTTTGTGTGTATTGTAAGACCATATTTTTATTTCTATA
8641 CAAATGATGATTTTAAGAGAAGTATCAGGAGAGAGAATGTATATGAAAGCATCGCGTCCACGCCTGGCTTTGCAATAAGT
8721 GTTCATTTAAAAGAAAGACATTTACAAAGGTAAAACATAAGAGTTTAGACTATAGCGATAAATCTTTTTATTTTAGTAAT
8801 TTCTTTAAAGGGAAAAGTAAAGAGATCAAAATGATTTTATATGTATTTTTTTTGTACTCAGAGAATTACATTTTCACTAC
8881 CCCCGCCTGTCTCAGGGAATAGCCTTTGATAAGAATCCCATGGAGATCTCTGGAACTCTATTACAGTGTGTTCAGATTTG
8961 TTAGTTCATATGTAAATTTCAGAGCTAGAGCTTCAAAACTAGAGTATTGTAATCTCAGGAACATAAGATTATCCAAGAAG
9041 CCTGAACCTTGCTCTTTTCATGATAAATGACATCCAAATTTCCTTTGTCTAGGAGATAAGCATAGATCCCTTTTATCATG
9121 CTTCTCTGAGATTTTCACAGAACAACCCTGCAATTTGATTTTGTTTGATAATTTTGCTTTTTGGCTTTTCAGTGAGGACT
9201 CTATTTTCCATTGGAACTGACTCCTTTGGGGATAATAAGCTTTCACTTAAAAGAACATTCCATTAGATAGTTCTAACTTC
9281 AATGAACCTAAAAGTGGCTTCTTAATTTGAATAATCTGGATAACTTTTGCAAATGGGTCAAAACAGCACAAGTATCAACA
9361 ATCACGTATGTACTGAGTAATATTTGCCCTCCAGTTAGCAAAGTCAAGAAATGTCTAACTCTGGCACACAGCACTGGTTT
9441 TAACTACTCTTTAGTTCATCTTTGCCTTCCAAATTGGTTGAAAATGGCAAGCTTAGAATGGAATGCATATTAATAACAGA
9521 ACCACTTAATGTTTTAAAATATTCATACCTTGAGATTCTTTTTGAGAGAAAAAAGAAATCTTAACATCCAATTCTAGTTG
9601 TTTTGGCTTTTCACATATGCTAGACATGAAAAAGGCAGTTACAAAAGTGAAATCCGATTGGAAGTCAGTGGTGTCCGCCA
9681 TTGAGCCGTGCTAAATGTCGTGTCACAAAAGGAGTTTGTGAAAACAGGATGAGTAGAAAATGTTATACTGTTGTTTCTAT
9761 CGTGGCACCGCTTTCTTATAAATTCCATTTGCTTTTTGTCATCTGAACTGTTACAACCATGGGAAACCTCAGTCCATATT
9841 TTTAAAAGCACTATATACTTACAGGAAAAACCGACTTATGCCTTCATTGAAAAAATGTTGAAGTTAATATCCCAAATGTT
9921 TAATGAGCATGTTTTAGAATATTTACAGCTAAAGTCTGTCACTTTAGGGATTTGACAAAACTTGAGACTGCCTGCCACCG
10001 AAGAGGGACCAGGCAGAATCTTCTCAGCCTTGTAACCAGCGTTAAAAAAATATAAGGGGCTTGATGAGATCCTAGATCTG
10081 CTCCTTTTCTCCTAGGTGCCTGGGTAACTCCTGGGGAAAGCATCATATTAAGTCCTTTTCAAGCAAGGTGTGTGATTTTG
10161 ACCAATGAATTGAGCTGATATGTGATTTTGACCAATGAATTGTGCATCTATTTAAAAATTACCAAGTGTATCTTGACTCT
10241 TGAGTGGACAGTCAAGGCAAAGTTTACTTAGGAAATGTAAAGTATGGAGTGTTTTAAAAAATTCAAATTGAGTTTATTCA
10321 CTGTTGGAGGAATTGAATTCTATTGCCTCCCTCATTTCCATTATGTTCATTGTTACAATTGTGCTGCTCTGTTCTCATTG
10401 TGATGCTTAGTTCTCGTGTAGAACTGAGTGCTACATTGTGATTAGAAACTGGAGTTGTGCTTGAGTCAGTCCTGGAAAAC
10481 AGGACCCATTTTTAAGAAGAACGGAACATACCACTTTGGCATTCTGGCTGACCCTAATTTCTGCAGAGTTCCTTGGTGTT
10561 AAAATCATTTGAGGTCATAGTTGCTGCTTATGGTTTATATACACACCATCTGCTGCTCTAAGTTCACATCCTCTCAAAAG
10641 CATGCAAGTGCTTGAAATTTAAATATTTCCCAGATCTAAAACAACTTGTGACTACCTAAGAAATGCTTGAACCAAATAAG
10721 AAACAGCACTGTGGAATAAAATATACCATTGTGAACATATCTGATGCTGCAATGAAATGTAAAGTTCCTTACTTTGCTGA
10801 TTTTTCATCATAACTCCTTGACTCATAAAAGCGGTGTCTAAACTGGGAACAGCTGCTAATAGGGTAAAAGTATTATACAT
10881 CAAATAAAAGTTCATTACAATATTTGTACTCATAAGTCAAAATCTGACCTGGTTCGCTTTGTGCCTCTGTCAGCCTACTT
10961 ACAGTGATAAATGTACACACAAGTCCAGTGTTGCCAAGGAGCTTTGTTTATAGAAAGAAGCTTGGTCCCCTCAGTTCTAT
11041 GCTGTTGTGTGGCCTGGTTGGTACATGCCGTCATGATGAAGGATGACTTTGGTTTGAGATAATTTGTCACTCCACATTCC
11121 ATGGAGAAAAGTGTTTCATTTTGATGTTGGAAAAACATGACCAGAGAAGCATGTGACTCAGATAATGTTCCCCGGAAGTT
11201 GCAGAGCAATCTGTGGTGTCTGTCATAGCCCAACTAGTCCTGGAGCACATGGACAATTCTGTACCCCAATAATCAGAACA
11281 ATAAAATGGTAGTTGTGATTCAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uguccgUACCCU------CCAGUCCACu 5'
                |||||:      ||||||||| 
Target 5' tgaccaATGGGGAACTGTGGTCAGGTGa 3'
 7021 - 7048 158.00 -24.40
2 
miRNA  3' uguccgUACC--CUCCAGUCCACu 5'
                :|||  ||  ||||||| 
Target 5' ctgaaaGTGGAAGACATCAGGTGg 3'
 433 - 456 150.00 -15.70
3 
miRNA  3' uguccGU-ACCCUCCAGUCCAcu 5'
               || || |:  ||||||  
Target 5' ccccaCACTGTGGCTTCAGGTag 3'
 6959 - 6981 129.00 -10.40
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1310233420 2 dbSNP
rs1022693307 7 dbSNP
rs1370582086 9 dbSNP
rs969731207 11 dbSNP
rs375230657 18 dbSNP
rs746373355 36 dbSNP
rs1417407708 48 dbSNP
rs1416178208 52 dbSNP
rs1182681149 66 dbSNP
rs1482790658 73 dbSNP
rs1241082434 78 dbSNP
rs1479144946 84 dbSNP
rs981066261 90 dbSNP
rs1465337959 91 dbSNP
rs1267445653 93 dbSNP
rs1236174742 96 dbSNP
rs188298454 125 dbSNP
rs1312929218 126 dbSNP
rs1227435619 143 dbSNP
rs1378863632 147 dbSNP
rs1335210193 171 dbSNP
rs1036026483 174 dbSNP
rs892033251 176 dbSNP
rs754333486 192 dbSNP
rs1320510588 209 dbSNP
rs757711737 224 dbSNP
rs1351733588 228 dbSNP
rs753712461 244 dbSNP
rs989134921 245 dbSNP
rs1383144587 253 dbSNP
rs914437545 260 dbSNP
rs1471478427 272 dbSNP
rs1010448096 276 dbSNP
rs180817239 281 dbSNP
rs761614587 282 dbSNP
rs968506132 285 dbSNP
rs750875929 286 dbSNP
rs375907510 289 dbSNP
rs1356748321 299 dbSNP
rs1460807246 311 dbSNP
rs980221314 327 dbSNP
rs1366404015 337 dbSNP
rs758689858 339 dbSNP
rs780463205 340 dbSNP
rs564262959 341 dbSNP
rs1369810068 342 dbSNP
rs959947128 348 dbSNP
rs911265224 358 dbSNP
rs944048401 368 dbSNP
rs1363875544 373 dbSNP
rs992496057 388 dbSNP
rs764967195 394 dbSNP
rs1278567763 397 dbSNP
rs907823356 412 dbSNP
rs1190900952 430 dbSNP
rs1434906611 434 dbSNP
rs1267985539 436 dbSNP
rs1190054206 463 dbSNP
rs1489656063 470 dbSNP
rs1041084373 486 dbSNP
rs1205482938 490 dbSNP
rs973216985 491 dbSNP
rs1403666754 492 dbSNP
rs920387446 499 dbSNP
rs897144304 500 dbSNP
rs186534156 508 dbSNP
rs1404371637 511 dbSNP
rs768730794 514 dbSNP
rs1310061364 515 dbSNP
rs1410713738 517 dbSNP
rs1050242753 518 dbSNP
rs781160171 520 dbSNP
rs191423456 533 dbSNP
rs1222655182 545 dbSNP
rs1251350186 552 dbSNP
rs944059644 553 dbSNP
rs1479157534 571 dbSNP
rs1482161149 580 dbSNP
rs1041063712 582 dbSNP
rs750370110 584 dbSNP
rs181117650 585 dbSNP
rs1194374719 591 dbSNP
rs758277209 600 dbSNP
rs1347621974 605 dbSNP
rs888630256 606 dbSNP
rs1012398918 611 dbSNP
rs1223496544 616 dbSNP
rs1321462424 628 dbSNP
rs772973884 634 dbSNP
rs1229233306 642 dbSNP
rs779676156 644 dbSNP
rs1335325816 648 dbSNP
rs187023859 657 dbSNP
rs1397508480 662 dbSNP
rs1044172930 682 dbSNP
rs1335961854 693 dbSNP
rs1468225494 715 dbSNP
rs905578556 730 dbSNP
rs1003028872 731 dbSNP
rs1413512411 733 dbSNP
rs1159180615 741 dbSNP
rs1035403544 745 dbSNP
rs1405433315 747 dbSNP
rs1361668762 769 dbSNP
rs1189222848 773 dbSNP
rs368845630 776 dbSNP
rs955882751 782 dbSNP
rs1010165116 787 dbSNP
rs1021935877 789 dbSNP
rs1203582958 805 dbSNP
rs1460418306 807 dbSNP
rs1270594049 812 dbSNP
rs1209392514 828 dbSNP
rs1350071958 830 dbSNP
rs1327521904 834 dbSNP
rs968524577 835 dbSNP
rs1368327683 850 dbSNP
rs1277981945 855 dbSNP
rs7062408 858 dbSNP
rs1340836092 863 dbSNP
rs911046492 864 dbSNP
rs1010459305 885 dbSNP
rs1043250648 888 dbSNP
rs1207608 891 dbSNP
rs754701055 894 dbSNP
rs904666785 896 dbSNP
rs1001306437 903 dbSNP
rs1369401321 944 dbSNP
rs1207609 981 dbSNP
rs766988583 984 dbSNP
rs1228971178 985 dbSNP
rs1273939764 1000 dbSNP
rs771426170 1009 dbSNP
rs779361539 1010 dbSNP
rs1446465955 1035 dbSNP
rs1282328895 1038 dbSNP
rs948211042 1039 dbSNP
rs1357249026 1052 dbSNP
rs1207517060 1063 dbSNP
rs1252325160 1071 dbSNP
rs746434016 1075 dbSNP
rs1298215807 1076 dbSNP
rs1429985567 1082 dbSNP
rs1324171934 1083 dbSNP
rs774877308 1096 dbSNP
rs149920102 1097 dbSNP
rs183500165 1105 dbSNP
rs563743221 1106 dbSNP
rs1239131444 1108 dbSNP
rs1161304843 1161 dbSNP
rs772450813 1171 dbSNP
rs775676623 1175 dbSNP
rs1010275612 1178 dbSNP
rs766871412 1180 dbSNP
rs1187605089 1186 dbSNP
rs751764730 1192 dbSNP
rs760646849 1198 dbSNP
rs968638775 1199 dbSNP
rs1201006159 1206 dbSNP
rs755156917 1211 dbSNP
rs1006758575 1223 dbSNP
rs1018086138 1225 dbSNP
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rs1395801556 1251 dbSNP
rs1213911004 1255 dbSNP
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rs1337306573 1268 dbSNP
rs1276553694 1283 dbSNP
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rs1332526811 1302 dbSNP
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rs147483867 1309 dbSNP
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rs1171495303 1315 dbSNP
rs1409752624 1319 dbSNP
rs918643901 1325 dbSNP
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rs1041068747 1340 dbSNP
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rs1275607555 1372 dbSNP
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rs748230238 1381 dbSNP
rs1280620838 1414 dbSNP
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rs11540615 1436 dbSNP
rs1322209015 1441 dbSNP
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rs1210902 1470 dbSNP
rs1187815205 1476 dbSNP
rs777740153 1478 dbSNP
rs1353173657 1482 dbSNP
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rs1470627681 1509 dbSNP
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rs750208814 1538 dbSNP
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rs1468378779 1557 dbSNP
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rs1376718008 1569 dbSNP
rs1043305410 1590 dbSNP
rs1056882412 1594 dbSNP
rs891503483 1618 dbSNP
rs1261182716 1619 dbSNP
rs766198366 1625 dbSNP
rs1464182228 1634 dbSNP
rs1329259888 1636 dbSNP
rs945806433 1641 dbSNP
rs1404758108 1649 dbSNP
rs1371626320 1651 dbSNP
rs1286385322 1657 dbSNP
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rs1405913117 1671 dbSNP
rs1335359961 1676 dbSNP
rs1183899159 1680 dbSNP
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rs1416243061 1680 dbSNP
rs1458845102 1680 dbSNP
rs199895709 1680 dbSNP
rs374617952 1680 dbSNP
rs749250647 1680 dbSNP
rs1443811227 1689 dbSNP
rs1241143132 1696 dbSNP
rs1190485318 1697 dbSNP
rs1415589131 1698 dbSNP
rs1259705441 1707 dbSNP
rs1201187046 1714 dbSNP
rs1213194164 1715 dbSNP
rs1320448607 1725 dbSNP
rs1164474610 1726 dbSNP
rs1170411695 1726 dbSNP
rs1184192883 1726 dbSNP
rs1221348209 1726 dbSNP
rs1230083013 1726 dbSNP
rs1260975228 1726 dbSNP
rs1269096410 1726 dbSNP
rs1288299960 1726 dbSNP
rs1290111542 1726 dbSNP
rs1292062508 1726 dbSNP
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rs1308522216 1726 dbSNP
rs1313533131 1726 dbSNP
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rs1380552417 1726 dbSNP
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rs1451726347 1726 dbSNP
rs1489196071 1726 dbSNP
rs369307335 1726 dbSNP
rs748454639 1726 dbSNP
rs770676207 1726 dbSNP
rs773088240 1726 dbSNP
rs773519323 1726 dbSNP
rs12848408 1730 dbSNP
rs1363188932 1740 dbSNP
rs12848421 1741 dbSNP
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rs1462851341 1751 dbSNP
rs1303950476 1752 dbSNP
rs1404639521 1753 dbSNP
rs1363474509 1763 dbSNP
rs1268175695 1764 dbSNP
rs1309561365 1764 dbSNP
rs1164808755 1765 dbSNP
rs1330763889 1766 dbSNP
rs373698933 1767 dbSNP
rs1462309767 1772 dbSNP
rs1475449888 1773 dbSNP
rs1276438347 1777 dbSNP
rs1345425034 1785 dbSNP
rs1042742287 1786 dbSNP
rs1434376542 1790 dbSNP
rs1429432334 1794 dbSNP
rs774024110 1801 dbSNP
rs904177904 1803 dbSNP
rs1489685583 1811 dbSNP
rs1006791047 1813 dbSNP
rs1208087923 1816 dbSNP
rs745469250 1824 dbSNP
rs1197882745 1832 dbSNP
rs901024696 1833 dbSNP
rs1208821136 1844 dbSNP
rs1266001340 1851 dbSNP
rs771682494 1854 dbSNP
rs775060957 1857 dbSNP
rs951581233 1863 dbSNP
rs1209392 1871 dbSNP
rs1331169660 1872 dbSNP
rs904754117 1877 dbSNP
rs1016972625 1883 dbSNP
rs1379781906 1887 dbSNP
rs1296351666 1890 dbSNP
rs1480960805 1891 dbSNP
rs1406746886 1896 dbSNP
rs1174995836 1898 dbSNP
rs969367272 1903 dbSNP
rs1387097576 1907 dbSNP
rs1413651060 1912 dbSNP
rs1182140688 1920 dbSNP
rs1420015588 1931 dbSNP
rs754469275 1936 dbSNP
rs1250333913 1937 dbSNP
rs780713555 1939 dbSNP
rs1463003911 1947 dbSNP
rs981035379 1962 dbSNP
rs1264310468 1964 dbSNP
rs1459239398 1967 dbSNP
rs1002137008 1981 dbSNP
rs1207610 1991 dbSNP
rs1390067425 2000 dbSNP
rs1334947007 2004 dbSNP
rs1385358150 2008 dbSNP
rs1454379068 2022 dbSNP
rs1383382173 2023 dbSNP
rs978079321 2029 dbSNP
rs187827769 2030 dbSNP
rs190007023 2032 dbSNP
rs1055957863 2034 dbSNP
rs142468062 2039 dbSNP
rs895591830 2043 dbSNP
rs751880333 2047 dbSNP
rs1013927841 2048 dbSNP
rs1014558251 2050 dbSNP
rs1487208371 2060 dbSNP
rs1211327930 2067 dbSNP
rs1267606917 2077 dbSNP
rs1205801951 2091 dbSNP
rs1350138875 2095 dbSNP
rs755211241 2103 dbSNP
rs904210636 2104 dbSNP
rs1181927115 2108 dbSNP
rs1410163420 2136 dbSNP
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rs1039599274 2161 dbSNP
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rs767694408 2173 dbSNP
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rs1025940076 2221 dbSNP
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rs953314411 2322 dbSNP
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rs1391949020 2351 dbSNP
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rs1202549861 2450 dbSNP
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rs777866546 2504 dbSNP
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rs1269995971 5000 dbSNP
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rs774181143 5008 dbSNP
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rs1198588510 11235 dbSNP
rs1043318177 11236 dbSNP
rs1426683886 11240 dbSNP
rs1055186 11273 dbSNP
rs766788390 11279 dbSNP
rs1295628076 11280 dbSNP
rs1437699451 11283 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uguccguacccuccaGUCCACu 5'
                         |||||| 
Target 5' ---------guacgcCAGGUGa 3'
 		1 - 13
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000441463.2 | 3UTR | GUACGCCAGGUGAUUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA 0.599 0.01 0.758 0 14 Click to see details
KICH -0.997 0.02 -1.000 0.5 3 Click to see details
UCEC 0.471 0.06 0.427 0.08 12 Click to see details
LUSC -0.281 0.13 -0.207 0.2 18 Click to see details
KIRP 0.131 0.34 0.091 0.39 12 Click to see details
HNSC -0.166 0.36 -0.179 0.35 7 Click to see details
PRAD 0.07 0.36 0.024 0.45 28 Click to see details
THCA -0.042 0.39 -0.003 0.49 48 Click to see details
STAD -0.105 0.42 -0.143 0.39 6 Click to see details
BLCA -0.071 0.44 -0.357 0.22 7 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
KIRC 0.066 0.46 0.400 0.25 5 Click to see details
104 hsa-miR-3622a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT052866 MRPL16 mitochondrial ribosomal protein L16 1 1
MIRT076712 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080211 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081397 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107157 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254070 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409789 FOXO3 forkhead box O3 2 2
MIRT448680 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450207 ABHD15 abhydrolase domain containing 15 2 2
MIRT486622 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489268 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493118 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494571 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497396 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504901 CCDC86 coiled-coil domain containing 86 2 2
MIRT505193 USP46 ubiquitin specific peptidase 46 2 4
MIRT506524 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508163 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508546 PARVG parvin gamma 2 4
MIRT509851 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510089 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512095 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515382 RPL7 ribosomal protein L7 2 2
MIRT519177 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519965 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522293 NKAP NFKB activating protein 2 2
MIRT523161 HMGB2 high mobility group box 2 2 4
MIRT525315 FANCA Fanconi anemia complementation group A 2 2
MIRT528195 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532886 ZNF451 zinc finger protein 451 2 2
MIRT538210 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539498 ACTN4 actinin alpha 4 2 2
MIRT554602 RRAGC Ras related GTP binding C 2 2
MIRT562446 DCTN6 dynactin subunit 6 2 2
MIRT562749 AOC3 amine oxidase, copper containing 3 2 2
MIRT565800 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565839 SCML2 Scm polycomb group protein like 2 2 2
MIRT566073 RCC2 regulator of chromosome condensation 2 2 2
MIRT566105 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572408 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576199 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576314 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576652 Mill2 MHC I like leukocyte 2 1 1
MIRT576860 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606820 BICD2 BICD cargo adaptor 2 2 2
MIRT610739 NUDT16 nudix hydrolase 16 2 4
MIRT614799 RORA RAR related orphan receptor A 2 2
MIRT619007 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619421 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620406 MYO1H myosin IH 2 2
MIRT624870 ABHD13 abhydrolase domain containing 13 2 2
MIRT633528 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633928 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636612 CLIC5 chloride intracellular channel 5 2 2
MIRT640617 MIOX myo-inositol oxygenase 2 2
MIRT642606 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644625 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655114 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658977 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661496 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662997 TMEM59 transmembrane protein 59 2 2
MIRT663076 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665406 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666107 SSR1 signal sequence receptor subunit 1 2 2
MIRT669563 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670071 ZNF783 zinc finger family member 783 2 2
MIRT671193 ZNF891 zinc finger protein 891 2 2
MIRT675362 KLHL26 kelch like family member 26 2 2
MIRT678858 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679444 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684164 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684544 ZNF460 zinc finger protein 460 2 2
MIRT684675 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684972 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686007 NEK4 NIMA related kinase 4 2 2
MIRT687759 KIAA1328 KIAA1328 2 2
MIRT688962 ATXN3 ataxin 3 2 2
MIRT689410 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690002 MMP17 matrix metallopeptidase 17 2 2
MIRT690166 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690203 C5orf45 MRN complex interacting protein 2 2
MIRT690478 ZNF33A zinc finger protein 33A 2 2
MIRT690567 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692161 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693431 PLGLB2 plasminogen-like B2 2 2
MIRT693548 ZNF708 zinc finger protein 708 2 2
MIRT693698 PLGLB1 plasminogen-like B1 2 2
MIRT695007 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698526 TFRC transferrin receptor 2 2
MIRT699575 SIKE1 suppressor of IKBKE 1 2 2
MIRT703447 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704398 CTSS cathepsin S 2 2
MIRT704486 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709511 IGF2 insulin like growth factor 2 2 2
MIRT709823 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710860 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711894 INSIG2 insulin induced gene 2 2 2
MIRT713797 CPLX2 complexin 2 2 2
MIRT718801 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719502 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719723 PDE6B phosphodiesterase 6B 2 2
MIRT722205 URM1 ubiquitin related modifier 1 2 2
MIRT723524 CLPTM1L CLPTM1 like 2 2
MIRT725473 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3622a Doxorubicin 31703 NSC123127 approved resistant High Hepatocellular Carcinoma cell line (HepG2)
hsa-mir-3622a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-miR-3622a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622a-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3622a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622a-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3622a-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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