pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TSPYL4   
Synonyms dJ486I3.2
Description TSPY like 4
Transcript NM_021648   
Expression
Putative miRNA Targets on TSPYL4
3'UTR of TSPYL4
(miRNA target sites are highlighted)
>TSPYL4|NM_021648|3'UTR
   1 TCTCTGTCCTGTGAGAAGCTTCTGCACAAGTTTCCTTACCACCTCCTCTTGGACCTATGCTTGGCCAACAGCATGCAGTC
  81 TTCCATCTGCTTTCTCTTCATACTGTGGATTATCTTTTCCTTTGGTTCTAAATCTTCAGTAATCGGTTGCAAGATTGTTG
 161 GCTTACCTGCCTGTGCCATTCTTCCTCTGGGCCTTCATGCTTTTCTGCATTGTGTTAACATGTTTCAAGTGCATGGCCTT
 241 CTACGGCTTCTATGCCAAGCGTATGATACTATAGATATAGTGTACCATACTGCCTTTCTTTGCATGGCTTGGACCCTATC
 321 TGTGACCATGCTCTTCTCCCAATTTAAGTGGTTCTGTACCACAAAGAATCTTGATACATTTTCACAAATAACTGATTGGG
 401 CTTCATACTTTATGCTGGCTGTGTCCTGATACCCATGTACTTATGGTAAGCTATTTGGGTATTACCACTGCAAGACAAAA
 481 CTGATATCTTAACCCGGCCATCAACCCAAATTGGACATTCCAGACTACCACCAACTGGATCCCAGCTGCCTTCCTGGGCT
 561 TGTGCCATCCACCCTACTGGTTATCTGATAGAACAAGCTGGTGGCTGATGGGTGACTGCTAGGCGTGACTGAGGTAATAG
 641 ATGAAAAGTGTTCTATGTTATCACATTGGTTTTCCTGTACCTTTGGTTACTCTACGTCATGACCAGCTGCTGGTGAGTAT
 721 GAAGCCTGTGCTATAGCCCACCCCTACTCACTCTCACCTTCTGGTTGAACTTTGCTTAGGCCACCATTGTCTGCCTCATC
 801 AGGAACTATCTGTAGACGTAGCTCCCAGGGAGCTCACAGCAACACCCCCTACCACCAGGATGGGCAGTAATATGTGACAG
 881 AGCCCAAAGCAAGGCTGGAACGCAGTCCCTTCCAGCTTAGTCTTTCTGACTCCTAGCCAACAAACCATCCTTAATGTGAG
 961 CAACTTCTTTAGGCATTTCCTCTTTTCCCCGCCTGCACCCACTCTGAACATGACAAAAGTTGCCAGAGTTGGGGCATTGA
1041 GGAAGAGATATTTCTGGAATGTGAGACTTGTTATGCCTCTGTCTCTTTCTCTCCCTCCTCCTCCCCTCTCCCTCCCCCTC
1121 TCCCTCCCATCCCTTTTCTTCCCTTTCACTCTGAAGCAGTTTTAGCTTATTAACAGAAAACAAAACTGGCAAAGCAGGCT
1201 TTTTGTTTAATTTGCTCTTTCCCTGATTGTGTTCAGAGAGAAAGGTTATGATTAAATGGGCTCCAGATCTCTTATTGCCC
1281 TTATTCCTCCACCCCACTTCTTTTAGCAAGGTCTGAAAGTTTCAAAGGGAGACCTATAGGTTAATTGTTTAGTTATAGGC
1361 AGTGTTAAATTAGGCAGATTTTGACATATTTATCTTTTTACCCCATCCATTCTACCAAAACCTGTGTATTTCTTGAGTTT
1441 TTAGTTTGAGAAGCTGGAAAGAGAGAGAAGGGCCTCACAGTGATGGGTTCAGGACGGGTCAAAGGCAAAGGCCTTTGTGA
1521 TGTGAGCAAAGGCAACCAAAACTTAGCCTCACTCCACTTTTCTAAAGATGGAAATTCTTTTTTGGGCCTTGGACTGCTTC
1601 TAGGGTAGCATTTTGTAGGTCACTCTTCTCCTTTGTACTATTTTGTTTCTGCCCTGATGTCCCTTGGGTCTCCATCCTAC
1681 TGCCTGGCTTTCTTGGCCCTCATTTCTCAGCTTCTGCATTTCCTTCCCTGCTCCTAACAAATGAAGAAGCAGGCTGCAGC
1761 CTGCATTGTGGAAGATCTCCAGCCTCCTTGTAGGGGATAAGGGGATGTGCAGCATCTGTGTGGATTTTCACGGACAAGTT
1841 CCAGTAGGTGGGACAGTGATGCCGTCAAGGCTTAGTTATGATCATGTGTGGTGATAAAGACCATCCACCATCACCCTTTT
1921 CCCCTTTGGTTTTGAAGGCCTTGCCCTAAGCTACCTGAGGGTTTAGGAGGTCTGAACACACACAGTGGAGAGGTTAATCT
2001 AGGTTGGGAAACTGAGTAAAAGTCCAGAGCAGGAATGAGCCTGCTGTGGCGTGGGTTTGGAAAGGCTCACAGGAAAGAAC
2081 CTGCAGGATCAGGGGTGGGAGGGGAGGCCCCTGAGGTGCTCTCCAGGGAAGAGGGGCTGGGGTTTAAATAGCATGCTTGG
2161 AGGAAGATTTTCCTTCAATTTTTCCTAAGTCCTTGAATTCACCAGTAGATTTTTGTAAACAAAATGTAAGTCGATGTTTT
2241 CTCTCAATTATCCTAGGAGTGACCTTTATATGTGTGGAAGATTAATGGTATATGCTCCTTATGTCACTGTTTTTGAGTAA
2321 AATCCATTTCCTTTCTCTGTTTCAGCCTATGACAAAATTGATGTTTACAGGCCTGCTTTTTGCTTATAATTGACAACATG
2401 TGCAAAAATACCAAATTTGTGTCCTGTGCAGTATGAAGAATTCAGTGAATATTCATTAATGTATTAGCTTGTTTTGCTCT
2481 CTGTTCATATATGGCTCTATTCTTAGAAATATAATTTGAATGTGATCTTTCAATAGTCTGAATATTTTACAAATTATAGC
2561 TATGTCTTGTGAAAATAACCTCAAAAAGAAAAATACGACTCTGTTGTCTTACTTGATATTTCTTGCCCTAGTAATGTACT
2641 TGACATTTATGTTCCTAAGCAGTGTAAGTACCAGTAGAATTTCTCTGTCAAACTCAATGATCATTTAGTACTTTTGTCTT
2721 CTCCCATGTGCTTGAAGGAAAAATAAAGTGTCACTACCGTATTTCTTGTTTTCATCAAAAAATAAAAATAATTTAAAAAA
2801 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacgucGGAACUGGAGGGUc 5'
                 |||   ||||||| 
Target 5' ccctcccCCTCTCCCTCCCAt 3'
1110 - 1130 146.00 -14.40
2
miRNA  3' ugaCGUCGGAACUGGAGGGUc 5'
             ||||:|    |||:||| 
Target 5' aacGCAGTC----CCTTCCAg 3'
899 - 915 136.00 -20.90
3
miRNA  3' ugaCGUCGGAAC--UGGAGGGUc 5'
             |:| ::|||   :|||||| 
Target 5' ttaGTACTTTTGTCTTCTCCCAt 3'
2705 - 2727 136.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30177768 1 COSMIC
COSN26586944 9 COSMIC
COSN7595321 35 COSMIC
COSN1323563 172 COSMIC
COSN26571728 471 COSMIC
COSN30174429 502 COSMIC
COSN26556832 516 COSMIC
COSN26569615 553 COSMIC
COSN31523967 623 COSMIC
COSN31610936 630 COSMIC
COSN9964787 697 COSMIC
COSN17182879 1215 COSMIC
COSN9292302 1504 COSMIC
COSN15009710 1593 COSMIC
COSN5618618 1916 COSMIC
COSN32197023 2315 COSMIC
COSN9292301 2378 COSMIC
COSN5618617 2553 COSMIC
COSN14867425 2672 COSMIC
rs6755 2672 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1443420392 1 dbSNP
rs1258708045 2 dbSNP
rs1212504556 3 dbSNP
rs774125311 6 dbSNP
rs1487117336 11 dbSNP
rs769169017 12 dbSNP
rs747429780 18 dbSNP
rs55804829 19 dbSNP
rs772704745 28 dbSNP
rs768466156 29 dbSNP
rs1340782759 38 dbSNP
rs746349684 43 dbSNP
rs779064603 45 dbSNP
rs986815019 48 dbSNP
rs759943043 49 dbSNP
rs1035244962 55 dbSNP
rs538039455 57 dbSNP
rs1311269395 60 dbSNP
rs1172941716 62 dbSNP
rs1340216402 64 dbSNP
rs905233995 72 dbSNP
rs1293475247 96 dbSNP
rs1045058789 98 dbSNP
rs995352459 106 dbSNP
rs899264798 112 dbSNP
rs1361975131 126 dbSNP
rs1486577113 128 dbSNP
rs1030975982 130 dbSNP
rs1255463353 144 dbSNP
rs1036825028 145 dbSNP
rs1424160183 145 dbSNP
rs1418051559 148 dbSNP
rs1158296356 162 dbSNP
rs1419710427 190 dbSNP
rs939843827 191 dbSNP
rs976093650 197 dbSNP
rs1455448881 209 dbSNP
rs1301603435 236 dbSNP
rs558664499 238 dbSNP
rs1051048942 241 dbSNP
rs1485462955 242 dbSNP
rs962004294 251 dbSNP
rs1015018666 256 dbSNP
rs9387389 260 dbSNP
rs760515696 261 dbSNP
rs1207498651 268 dbSNP
rs1254910436 272 dbSNP
rs570050445 274 dbSNP
rs773128551 278 dbSNP
rs975088547 281 dbSNP
rs879408721 290 dbSNP
rs1236094445 295 dbSNP
rs771611277 303 dbSNP
rs555105693 304 dbSNP
rs535606537 310 dbSNP
rs1409062465 318 dbSNP
rs1002423617 325 dbSNP
rs1173959370 327 dbSNP
rs1329169790 328 dbSNP
rs1289684498 329 dbSNP
rs1412456944 334 dbSNP
rs1470559719 341 dbSNP
rs1354416574 342 dbSNP
rs1398513070 343 dbSNP
rs905122442 348 dbSNP
rs1298394618 351 dbSNP
rs747781152 354 dbSNP
rs1397531409 366 dbSNP
rs1374983238 373 dbSNP
rs1046266386 378 dbSNP
rs915012280 394 dbSNP
rs1382553333 396 dbSNP
rs1288170984 397 dbSNP
rs1312298682 399 dbSNP
rs1457719663 399 dbSNP
rs1414195925 416 dbSNP
rs773882971 417 dbSNP
rs1162856369 419 dbSNP
rs1013208920 422 dbSNP
rs1474947283 427 dbSNP
rs1199108828 430 dbSNP
rs987818167 439 dbSNP
rs1234397775 452 dbSNP
rs892132337 454 dbSNP
rs568279900 462 dbSNP
rs1424495202 465 dbSNP
rs956874302 468 dbSNP
rs1480825741 469 dbSNP
rs1052171793 471 dbSNP
rs780605654 477 dbSNP
rs147713283 484 dbSNP
rs1445589153 492 dbSNP
rs549365694 495 dbSNP
rs781645204 496 dbSNP
rs1356667053 506 dbSNP
rs925464046 508 dbSNP
rs1024282246 523 dbSNP
rs1050633343 526 dbSNP
rs185512377 530 dbSNP
rs551880733 534 dbSNP
rs994859896 542 dbSNP
rs1466634564 549 dbSNP
rs1406304322 552 dbSNP
rs932112601 562 dbSNP
rs1317152351 564 dbSNP
rs1271891889 569 dbSNP
rs181041006 587 dbSNP
rs1274797464 589 dbSNP
rs976291876 609 dbSNP
rs1219604774 613 dbSNP
rs563194429 624 dbSNP
rs962076909 625 dbSNP
rs907867256 635 dbSNP
rs1284384916 636 dbSNP
rs1246565815 642 dbSNP
rs1201606553 649 dbSNP
rs984897171 650 dbSNP
rs1477754062 654 dbSNP
rs1169031915 655 dbSNP
rs952180817 666 dbSNP
rs527998406 669 dbSNP
rs1015011364 694 dbSNP
rs1004969709 695 dbSNP
rs534374141 696 dbSNP
rs757798548 699 dbSNP
rs1426167674 709 dbSNP
rs1295743882 719 dbSNP
rs1339300357 719 dbSNP
rs777902633 720 dbSNP
rs1271896219 738 dbSNP
rs747366636 743 dbSNP
rs1002052883 750 dbSNP
rs1227586288 755 dbSNP
rs778255307 757 dbSNP
rs1360372857 758 dbSNP
rs1225036804 763 dbSNP
rs1323850911 775 dbSNP
rs899767898 778 dbSNP
rs1460947035 791 dbSNP
rs1024889373 793 dbSNP
rs1391570032 798 dbSNP
rs541539725 799 dbSNP
rs946413389 817 dbSNP
rs752376433 818 dbSNP
rs892163436 821 dbSNP
rs1052030261 824 dbSNP
rs1474551852 825 dbSNP
rs189804759 833 dbSNP
rs987882364 838 dbSNP
rs935066518 843 dbSNP
rs772155504 847 dbSNP
rs184936360 848 dbSNP
rs1400828520 849 dbSNP
rs1451775856 850 dbSNP
rs914707488 850 dbSNP
rs1251645971 864 dbSNP
rs748300413 865 dbSNP
rs1213655220 869 dbSNP
rs369767600 877 dbSNP
rs1050563897 890 dbSNP
rs1307410866 898 dbSNP
rs932171785 901 dbSNP
rs1205861134 903 dbSNP
rs1286435884 904 dbSNP
rs1441132340 905 dbSNP
rs182249803 906 dbSNP
rs1040682500 920 dbSNP
rs571841141 928 dbSNP
rs1337042068 933 dbSNP
rs758701190 941 dbSNP
rs1228822861 947 dbSNP
rs1931895 956 dbSNP
rs952106826 957 dbSNP
rs1023896728 972 dbSNP
rs927405121 975 dbSNP
rs980592824 980 dbSNP
rs1301095790 986 dbSNP
rs1337358801 989 dbSNP
rs974024777 990 dbSNP
rs145683511 991 dbSNP
rs1331684255 993 dbSNP
rs1013477835 1001 dbSNP
rs1335328208 1002 dbSNP
rs1240044933 1005 dbSNP
rs1281305163 1010 dbSNP
rs1342997355 1014 dbSNP
rs956639472 1016 dbSNP
rs1030845071 1022 dbSNP
rs1462922729 1025 dbSNP
rs1396015294 1039 dbSNP
rs1000543320 1045 dbSNP
rs765408161 1058 dbSNP
rs963449501 1063 dbSNP
rs1014926868 1071 dbSNP
rs1379369317 1074 dbSNP
rs1477438228 1076 dbSNP
rs903476508 1078 dbSNP
rs1431974115 1079 dbSNP
rs1028780371 1085 dbSNP
rs1393683798 1089 dbSNP
rs1004999425 1090 dbSNP
rs1169624932 1091 dbSNP
rs1396975764 1096 dbSNP
rs1392138988 1097 dbSNP
rs1204833 1099 dbSNP
rs1329391858 1100 dbSNP
rs890526982 1100 dbSNP
rs1030398235 1101 dbSNP
rs1326190577 1102 dbSNP
rs1217363636 1103 dbSNP
rs1251071969 1106 dbSNP
rs902041598 1107 dbSNP
rs71570803 1109 dbSNP
rs773270776 1110 dbSNP
rs1287370720 1111 dbSNP
rs1490043022 1113 dbSNP
rs1199424772 1115 dbSNP
rs1249038370 1116 dbSNP
rs998033775 1116 dbSNP
rs1040583784 1118 dbSNP
rs1463376055 1119 dbSNP
rs1169856165 1121 dbSNP
rs1435607145 1122 dbSNP
rs1424263078 1127 dbSNP
rs1273411063 1128 dbSNP
rs1205452690 1129 dbSNP
rs1327377711 1129 dbSNP
rs986236800 1129 dbSNP
rs1343965728 1132 dbSNP
rs1230168381 1147 dbSNP
rs1207498019 1149 dbSNP
rs899631638 1151 dbSNP
rs886699634 1160 dbSNP
rs1222798166 1165 dbSNP
rs555083384 1173 dbSNP
rs946625220 1181 dbSNP
rs927280304 1185 dbSNP
rs1262982942 1187 dbSNP
rs893499081 1188 dbSNP
rs1430076407 1189 dbSNP
rs1052031721 1197 dbSNP
rs950121783 1199 dbSNP
rs1335268573 1208 dbSNP
rs934972932 1210 dbSNP
rs1308820833 1219 dbSNP
rs1411901153 1228 dbSNP
rs536769257 1231 dbSNP
rs927729553 1234 dbSNP
rs981791544 1240 dbSNP
rs1451795819 1243 dbSNP
rs865817874 1252 dbSNP
rs1288793458 1257 dbSNP
rs1386230662 1259 dbSNP
rs1384434942 1277 dbSNP
rs948248799 1284 dbSNP
rs1382538958 1295 dbSNP
rs1415465227 1297 dbSNP
rs1427845241 1298 dbSNP
rs1157366543 1303 dbSNP
rs1350844147 1304 dbSNP
rs916732975 1307 dbSNP
rs1468124719 1319 dbSNP
rs1486771535 1331 dbSNP
rs1030877711 1337 dbSNP
rs1242274205 1338 dbSNP
rs747898961 1347 dbSNP
rs979754381 1347 dbSNP
rs754011670 1352 dbSNP
rs1417563737 1360 dbSNP
rs190546720 1363 dbSNP
rs1158405709 1373 dbSNP
rs140152959 1385 dbSNP
rs1455768659 1390 dbSNP
rs1029062228 1405 dbSNP
rs1405780771 1409 dbSNP
rs995833932 1410 dbSNP
rs1014958016 1415 dbSNP
rs901606696 1424 dbSNP
rs1483825553 1443 dbSNP
rs1318244460 1450 dbSNP
rs1255044680 1453 dbSNP
rs1209127254 1458 dbSNP
rs1323994698 1461 dbSNP
rs1205260199 1463 dbSNP
rs1312608382 1467 dbSNP
rs1236149608 1469 dbSNP
rs868448426 1483 dbSNP
rs185353351 1495 dbSNP
rs1005058290 1502 dbSNP
rs954666863 1504 dbSNP
rs1328487573 1510 dbSNP
rs1421007023 1511 dbSNP
rs147878828 1516 dbSNP
rs1030430818 1525 dbSNP
rs1470589683 1529 dbSNP
rs754817259 1531 dbSNP
rs930880483 1532 dbSNP
rs1440970690 1535 dbSNP
rs905890298 1546 dbSNP
rs1044806597 1547 dbSNP
rs963953632 1552 dbSNP
rs552487476 1554 dbSNP
rs1312536110 1555 dbSNP
rs917338620 1556 dbSNP
rs536880885 1557 dbSNP
rs368251093 1565 dbSNP
rs1010845245 1569 dbSNP
rs893730989 1578 dbSNP
rs1306745192 1579 dbSNP
rs1361295939 1583 dbSNP
rs762682597 1584 dbSNP
rs1252165316 1586 dbSNP
rs530411386 1589 dbSNP
rs1197277819 1596 dbSNP
rs117573255 1605 dbSNP
rs1413421892 1609 dbSNP
rs1159253611 1621 dbSNP
rs1473310100 1623 dbSNP
rs968350669 1635 dbSNP
rs547804886 1640 dbSNP
rs1170708942 1667 dbSNP
rs1028881645 1670 dbSNP
rs999154186 1674 dbSNP
rs1422376707 1676 dbSNP
rs1301937042 1677 dbSNP
rs1345633253 1682 dbSNP
rs529706388 1683 dbSNP
rs1268393908 1702 dbSNP
rs1360993676 1706 dbSNP
rs559031882 1710 dbSNP
rs1297464452 1711 dbSNP
rs541179781 1716 dbSNP
rs1220560722 1726 dbSNP
rs965664410 1728 dbSNP
rs142248072 1734 dbSNP
rs565428660 1735 dbSNP
rs1238991517 1745 dbSNP
rs377574219 1745 dbSNP
rs1004628079 1746 dbSNP
rs950891245 1747 dbSNP
rs1187414258 1750 dbSNP
rs916784411 1752 dbSNP
rs1028221267 1758 dbSNP
rs1213483978 1762 dbSNP
rs181786110 1763 dbSNP
rs1365634406 1776 dbSNP
rs942188997 1779 dbSNP
rs908139105 1782 dbSNP
rs1344465821 1787 dbSNP
rs1431403985 1794 dbSNP
rs1290359552 1795 dbSNP
rs1380344000 1796 dbSNP
rs1244009897 1806 dbSNP
rs11789 1810 dbSNP
rs1210631463 1816 dbSNP
rs761547814 1818 dbSNP
rs1282267253 1823 dbSNP
rs561236274 1831 dbSNP
rs923266773 1832 dbSNP
rs895817538 1842 dbSNP
rs543056141 1856 dbSNP
rs1053164126 1863 dbSNP
rs1460299617 1864 dbSNP
rs1034530057 1870 dbSNP
rs1182580880 1871 dbSNP
rs1229109360 1879 dbSNP
rs934732292 1884 dbSNP
rs1156241445 1886 dbSNP
rs781073459 1887 dbSNP
rs1204832 1890 dbSNP
rs1320250371 1891 dbSNP
rs1403600910 1894 dbSNP
rs868755475 1899 dbSNP
rs1337155914 1900 dbSNP
rs544760156 1906 dbSNP
rs554356736 1907 dbSNP
rs1350098745 1909 dbSNP
rs1323197497 1914 dbSNP
rs370845664 1914 dbSNP
rs1270637979 1945 dbSNP
rs946537634 1946 dbSNP
rs1244144598 1951 dbSNP
rs921848630 1959 dbSNP
rs974656719 1960 dbSNP
rs534511462 1961 dbSNP
rs1470240530 1970 dbSNP
rs1160223373 1976 dbSNP
rs1427038081 1991 dbSNP
rs1011167620 1996 dbSNP
rs957832254 2009 dbSNP
rs753126744 2015 dbSNP
rs1176832593 2016 dbSNP
rs1391688402 2017 dbSNP
rs983224723 2024 dbSNP
rs577004242 2025 dbSNP
rs1030877768 2031 dbSNP
rs1027375722 2033 dbSNP
rs748761411 2037 dbSNP
rs1443105606 2050 dbSNP
rs999395573 2051 dbSNP
rs1371929730 2052 dbSNP
rs970210497 2068 dbSNP
rs906241941 2069 dbSNP
rs1415582003 2070 dbSNP
rs1184554890 2080 dbSNP
rs1193691596 2091 dbSNP
rs1271917970 2095 dbSNP
rs1438055185 2097 dbSNP
rs1448684239 2101 dbSNP
rs188903325 2103 dbSNP
rs1210554270 2107 dbSNP
rs1014450833 2110 dbSNP
rs1467144312 2118 dbSNP
rs1431130099 2122 dbSNP
rs775045787 2126 dbSNP
rs1166363048 2134 dbSNP
rs1053029994 2136 dbSNP
rs1410757952 2142 dbSNP
rs1222480220 2154 dbSNP
rs1363820223 2156 dbSNP
rs894907382 2162 dbSNP
rs998789310 2170 dbSNP
rs1037427857 2176 dbSNP
rs1225618313 2178 dbSNP
rs942202384 2180 dbSNP
rs1271197991 2183 dbSNP
rs1339605907 2197 dbSNP
rs904614302 2199 dbSNP
rs1228097676 2201 dbSNP
rs908005656 2202 dbSNP
rs1366404897 2205 dbSNP
rs1490058026 2209 dbSNP
rs1223120000 2212 dbSNP
rs1043107481 2214 dbSNP
rs1439345405 2217 dbSNP
rs946582566 2225 dbSNP
rs148716367 2226 dbSNP
rs376799672 2230 dbSNP
rs562544076 2230 dbSNP
rs944589341 2231 dbSNP
rs3749893 2232 dbSNP
rs983131054 2233 dbSNP
rs1428826768 2241 dbSNP
rs950377808 2261 dbSNP
rs1190373362 2268 dbSNP
rs920339777 2272 dbSNP
rs372826473 2273 dbSNP
rs1318030271 2284 dbSNP
rs1327435892 2289 dbSNP
rs1230132094 2298 dbSNP
rs1312539522 2301 dbSNP
rs923288169 2301 dbSNP
rs975164219 2306 dbSNP
rs973172994 2309 dbSNP
rs1266711388 2311 dbSNP
rs1452489788 2315 dbSNP
rs970663154 2326 dbSNP
rs1262124634 2335 dbSNP
rs964710527 2337 dbSNP
rs560169460 2339 dbSNP
rs914648617 2356 dbSNP
rs747491104 2363 dbSNP
rs1444253693 2371 dbSNP
rs779414948 2378 dbSNP
rs1370305418 2381 dbSNP
rs1452228999 2397 dbSNP
rs1031850280 2398 dbSNP
rs1437810016 2399 dbSNP
rs1335149296 2400 dbSNP
rs750839507 2406 dbSNP
rs561927064 2410 dbSNP
rs144303964 2411 dbSNP
rs978008158 2418 dbSNP
rs551220956 2424 dbSNP
rs1314656422 2427 dbSNP
rs1238207503 2433 dbSNP
rs1261297314 2434 dbSNP
rs970601108 2444 dbSNP
rs1024870109 2454 dbSNP
rs1012340417 2457 dbSNP
rs1312116444 2460 dbSNP
rs1242328411 2461 dbSNP
rs894777285 2462 dbSNP
rs1016431991 2466 dbSNP
rs1182707495 2472 dbSNP
rs1005974011 2476 dbSNP
rs1038902069 2477 dbSNP
rs944491155 2478 dbSNP
rs12211767 2497 dbSNP
rs763694277 2500 dbSNP
rs1459294643 2505 dbSNP
rs1302632725 2512 dbSNP
rs772441440 2517 dbSNP
rs1466199996 2521 dbSNP
rs1304277137 2522 dbSNP
rs573111594 2527 dbSNP
rs1390382801 2533 dbSNP
rs886642703 2540 dbSNP
rs1352205978 2542 dbSNP
rs56074322 2544 dbSNP
rs1369125827 2546 dbSNP
rs1305730372 2547 dbSNP
rs929005433 2548 dbSNP
rs1324064194 2557 dbSNP
rs545377821 2560 dbSNP
rs920268260 2587 dbSNP
rs1195247128 2593 dbSNP
rs933449068 2596 dbSNP
rs1473833253 2597 dbSNP
rs1197934569 2598 dbSNP
rs1370852611 2603 dbSNP
rs1434176353 2603 dbSNP
rs1177783867 2606 dbSNP
rs902107308 2611 dbSNP
rs1170249967 2612 dbSNP
rs1352337727 2615 dbSNP
rs149583046 2616 dbSNP
rs1308074640 2620 dbSNP
rs139329664 2625 dbSNP
rs914574903 2626 dbSNP
rs1176733001 2628 dbSNP
rs1368040877 2629 dbSNP
rs1220675674 2635 dbSNP
rs1293197324 2636 dbSNP
rs1305932003 2645 dbSNP
rs990673939 2662 dbSNP
rs779246867 2671 dbSNP
rs6755 2672 dbSNP
rs1268884378 2675 dbSNP
rs1489095341 2675 dbSNP
rs1193227810 2676 dbSNP
rs1417854365 2680 dbSNP
rs1427526174 2684 dbSNP
rs1168891720 2687 dbSNP
rs879597223 2699 dbSNP
rs1422287925 2702 dbSNP
rs969151266 2704 dbSNP
rs1021607242 2707 dbSNP
rs528060785 2708 dbSNP
rs1286858082 2727 dbSNP
rs1025320120 2729 dbSNP
rs1227913143 2731 dbSNP
rs990714184 2732 dbSNP
rs997228167 2738 dbSNP
rs899928669 2744 dbSNP
rs1209135910 2748 dbSNP
rs1322795043 2750 dbSNP
rs1418934307 2757 dbSNP
rs1240699406 2758 dbSNP
rs1019674150 2759 dbSNP
rs1008740594 2761 dbSNP
rs1188800863 2761 dbSNP
rs1249435564 2764 dbSNP
rs1162327873 2768 dbSNP
rs1442415924 2768 dbSNP
rs1413930245 2771 dbSNP
rs1406983231 2773 dbSNP
rs550126798 2776 dbSNP
rs1156892839 2780 dbSNP
rs1344367505 2783 dbSNP
rs959339420 2785 dbSNP
rs1257046643 2794 dbSNP
rs890293204 2795 dbSNP
rs1047713160 2796 dbSNP
rs1450750320 2797 dbSNP
rs1283645004 2799 dbSNP
rs1357205673 2800 dbSNP
rs1015925685 2801 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgucGGAACUGGAGGGUc 5'
                 |||   ||||||| 
Target 5' cccucccCCUCUCCCUCCCA- 3'
23 - 42
2
miRNA  3' ugacgucGGAACUGGAGGGuc 5'
                 |||   ||||||  
Target 5' -ucucucCCUCCUCCUCCCcu 3'
1 - 20
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000420283.1 | 3UTR | UCUCUCCCUCCUCCUCCCCUCUCCCUCCCCCUCUCCCUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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