pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PABPC1L2B   
Synonyms RBM32B
Description poly(A) binding protein cytoplasmic 1 like 2B
Transcript NM_001042506   
Expression
Putative miRNA Targets on PABPC1L2B
3'UTR of PABPC1L2B
(miRNA target sites are highlighted)
>PABPC1L2B|NM_001042506|3'UTR
   1 AGACATCCCAGGAGCTAGCCAGCCAGCAGAGCCAAACCTTGGCTCACACCCGGTTTACAACCCCCCACCCCCAGCCCTCC
  81 CCCGCCAACCCACCAGCAGTGTATTTATTGTATTGAGAGTGCAGGTCTCTCTCTCTCTCTCTCTCCCCTTCTCTCTCCCC
 161 GCTTCCTATTTTCTCCCTCCACCTCTCCTCTCCTTCCCTTCCTCTCCCCCGCCCACCCCCACCAAGGGCGTTGTGAATAA
 241 TCTTACTAATCTGTGCCATTTGTAGGTTAAAGGCTGCCTCTTCTCCCTGTGGTTTGGTTTAAAAAGCATTTTCATTCTCT
 321 CTTTGTTTACTGCACAGGTGGTACAATTTCATGGTAGAATCATCAGAAAGGAGAAGGATATCAGATGAGGGAAGAAACAA
 401 GAGAGTAATTGCTCCCCTGGTCCTACTCCCCAGAGAGAACCACTTTTACCTTTTTGGTGTGCTGCTTTTCCAGGCTCTCT
 481 TCTCTCCCTCTCTCTCCTTTGCTCACCCCCACCCCGCCTTCCCTTTTAACACACCGTTATAGAATGGTTCATGTATGTGG
 561 TGTTTCTTAACCTGCTTTTTCAGCAACTAAAACCAAACAAAAATCAACCCATTGAACTTCTTTCCATGTTATCAACAGGC
 641 TTATGAAATGTCATCTTCAGTGCCTGCAGAGTGCTCCAGTGTATCCGTGGACCTTAACATTTCTGTAATCATTCCCGCAT
 721 TGTTGGACATTCAGGTGGTGCCTAGTTCTTTCCCTGTGTTTAAGACCAACATTGCGTGCTCTGTGCTTTGATGAGTGAAT
 801 CCTTCCTTGTCAAGCCAAATCTTTGCTAGCATCCCGGTGGTCTCCTTAACTGCGGACTTGCAAGATCCACATATAGACAT
 881 TTTAAAGACTTTTCCTGTGTGTTGCCAAAAGGCCCCCTTCATAAGCATTGTACCGATTTGCACTCGTGCCGGCCAGCGCA
 961 GCTAGTAAAGAGTATGCCCGTTTCCCCTGCATAGCCTCCTGGTCACTGTAATTGATCGTGTGTGTGCGTGCGTGCGTGTG
1041 TGCATGCGTGTGTGTGTCTTTGTGTGTGTGTCTTGGCCAGCTTGGCGGGCTGCAAAGGGTGTTTCCCTGTCCTCAGTGGT
1121 TTTGCTGCAATCAAACACTGTTTATTACCCCCTTCCCCTGTGCCCACTTCCTGTCCTTTTCCCTGTTGTCAGAAAAATAA
1201 TTCAGCGTCATTGCAGGAAAAAAATAATCACGAAGCAGACAAGTTAACAGAAGAAAATTAATGTCACCAGTAATCATTTC
1281 TGATGATTACTTATACATTCCTGAAACATTTTCATCTGTATCTGCCCTGTATTTTTCATGTGATATATATGTGAAATTAT
1361 TGTATATACTGTTTCAATATCTGCTTTTTCACACAGAAATATATATTATAGACATAGATTTATAGATATTCTTGAACTTT
1441 CATGTCATTAAATATTCTTCTAAAATA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauucuGGUUCGGAGGAAGGGa 5'
                |||  || ||||||| 
Target 5' tcacccCCACCCCGCCTTCCCt 3'
503 - 524 156.00 -19.50
2
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     :||||||||| 
Target 5' tccacctctccTCTCCTTCCCt 3'
178 - 199 151.00 -20.80
3
miRNA  3' gauucUGGUUCGGAGGAAGGGa 5'
               |::|  || ||||||| 
Target 5' tgtttATTA--CCCCCTTCCCc 3'
1139 - 1158 149.00 -15.40
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1483039148 3 dbSNP
rs1274365250 27 dbSNP
rs1216787323 41 dbSNP
rs1342983209 52 dbSNP
rs1274266453 62 dbSNP
rs1224429559 63 dbSNP
rs1347603617 64 dbSNP
rs868924580 68 dbSNP
rs868936461 74 dbSNP
rs868990576 79 dbSNP
rs1330835879 80 dbSNP
rs1412626735 123 dbSNP
rs1409274663 126 dbSNP
rs1423859511 126 dbSNP
rs1481241970 126 dbSNP
rs1180956693 175 dbSNP
rs1469969453 178 dbSNP
rs1233756243 179 dbSNP
rs1207255026 180 dbSNP
rs1441193306 181 dbSNP
rs1278071525 182 dbSNP
rs1204358305 183 dbSNP
rs1286717747 189 dbSNP
rs1227962122 202 dbSNP
rs1373801721 203 dbSNP
rs1281004030 207 dbSNP
rs1445818424 213 dbSNP
rs1358482130 216 dbSNP
rs1336865178 217 dbSNP
rs1470688789 221 dbSNP
rs1385747479 222 dbSNP
rs781959571 249 dbSNP
rs1419235759 258 dbSNP
rs1409264935 265 dbSNP
rs1179311207 274 dbSNP
rs1472121883 277 dbSNP
rs1243042387 307 dbSNP
rs1184711937 308 dbSNP
rs1462731533 309 dbSNP
rs1266256877 322 dbSNP
rs1208352179 362 dbSNP
rs1317739585 379 dbSNP
rs1286157074 393 dbSNP
rs1226367305 402 dbSNP
rs1378120511 404 dbSNP
rs1315669896 414 dbSNP
rs1454451807 415 dbSNP
rs1319294986 416 dbSNP
rs1454042200 419 dbSNP
rs1346578427 424 dbSNP
rs1161788692 426 dbSNP
rs1403987939 434 dbSNP
rs1384950510 436 dbSNP
rs1164789029 438 dbSNP
rs1446903438 441 dbSNP
rs1246337606 460 dbSNP
rs1185991546 467 dbSNP
rs1486339233 493 dbSNP
rs1244089417 507 dbSNP
rs1219586502 514 dbSNP
rs1358477564 516 dbSNP
rs1292144173 533 dbSNP
rs1248164581 536 dbSNP
rs1382270358 537 dbSNP
rs1363404821 548 dbSNP
rs1291455881 554 dbSNP
rs1365347070 559 dbSNP
rs1164603404 572 dbSNP
rs1427172828 599 dbSNP
rs1388833128 645 dbSNP
rs5981602 650 dbSNP
rs1429222125 654 dbSNP
rs376528143 658 dbSNP
rs1189697145 687 dbSNP
rs1490245684 711 dbSNP
rs1269401730 718 dbSNP
rs144572256 725 dbSNP
rs1250724511 741 dbSNP
rs782143498 743 dbSNP
rs1308764683 745 dbSNP
rs1298476297 772 dbSNP
rs1222596663 773 dbSNP
rs782700018 779 dbSNP
rs1304184184 811 dbSNP
rs1407179404 837 dbSNP
rs1369043732 840 dbSNP
rs1462883728 855 dbSNP
rs1356418690 857 dbSNP
rs1174022571 874 dbSNP
rs1480258905 875 dbSNP
rs1430204049 877 dbSNP
rs1201814904 907 dbSNP
rs1471502979 913 dbSNP
rs1249489635 914 dbSNP
rs1196316110 927 dbSNP
rs1481574344 933 dbSNP
rs1253800586 936 dbSNP
rs1202460345 946 dbSNP
rs187625726 947 dbSNP
rs1226129397 952 dbSNP
rs1334356716 959 dbSNP
rs1306728456 965 dbSNP
rs1392535504 968 dbSNP
rs1399227368 992 dbSNP
rs782474686 996 dbSNP
rs1469386329 1011 dbSNP
rs1178872380 1018 dbSNP
rs1406862950 1018 dbSNP
rs1363083161 1024 dbSNP
rs1455782531 1024 dbSNP
rs1182243721 1028 dbSNP
rs1182860035 1029 dbSNP
rs1420857780 1029 dbSNP
rs1461387870 1032 dbSNP
rs1206505124 1033 dbSNP
rs781875901 1033 dbSNP
rs1260553674 1035 dbSNP
rs1349483291 1035 dbSNP
rs1240165901 1036 dbSNP
rs1313586897 1036 dbSNP
rs1337859980 1036 dbSNP
rs1452480476 1040 dbSNP
rs1383625353 1041 dbSNP
rs1338779859 1042 dbSNP
rs1380803808 1042 dbSNP
rs1158972795 1044 dbSNP
rs1384500550 1044 dbSNP
rs1455183238 1045 dbSNP
rs1162857224 1047 dbSNP
rs1186096010 1048 dbSNP
rs1206481063 1048 dbSNP
rs1262027093 1048 dbSNP
rs1445160638 1048 dbSNP
rs190909302 1049 dbSNP
rs1289965176 1055 dbSNP
rs1245981823 1057 dbSNP
rs1360781181 1057 dbSNP
rs1317315058 1059 dbSNP
rs1325891801 1060 dbSNP
rs1319243109 1061 dbSNP
rs1384071214 1061 dbSNP
rs880002793 1061 dbSNP
rs1302290053 1071 dbSNP
rs1425272456 1072 dbSNP
rs1386977449 1073 dbSNP
rs1166593240 1077 dbSNP
rs183104677 1088 dbSNP
rs782326571 1089 dbSNP
rs782379817 1093 dbSNP
rs1373098223 1099 dbSNP
rs1194890635 1102 dbSNP
rs35495242 1105 dbSNP
rs141974740 1107 dbSNP
rs1267285675 1116 dbSNP
rs1222188059 1119 dbSNP
rs782231070 1129 dbSNP
rs1294625602 1130 dbSNP
rs782387960 1132 dbSNP
rs1338828739 1133 dbSNP
rs1270840789 1135 dbSNP
rs1229961822 1137 dbSNP
rs1343849598 1138 dbSNP
rs1282438641 1141 dbSNP
rs146386628 1142 dbSNP
rs139776847 1147 dbSNP
rs1326792072 1148 dbSNP
rs144388909 1153 dbSNP
rs1396679088 1162 dbSNP
rs1169133885 1164 dbSNP
rs1479280831 1165 dbSNP
rs145376683 1167 dbSNP
rs782039680 1198 dbSNP
rs1480981450 1201 dbSNP
rs1271412703 1205 dbSNP
rs1203117015 1215 dbSNP
rs1437742425 1217 dbSNP
rs1197595286 1218 dbSNP
rs1273861841 1218 dbSNP
rs1321450494 1223 dbSNP
rs1262773704 1225 dbSNP
rs1224291293 1229 dbSNP
rs1347170365 1232 dbSNP
rs782755099 1233 dbSNP
rs1441465096 1236 dbSNP
rs1336259460 1237 dbSNP
rs781817800 1241 dbSNP
rs1330356366 1248 dbSNP
rs1467805359 1249 dbSNP
rs1404658655 1263 dbSNP
rs782163425 1270 dbSNP
rs1470749276 1274 dbSNP
rs1427767837 1276 dbSNP
rs1470109536 1281 dbSNP
rs1233994899 1289 dbSNP
rs782133718 1292 dbSNP
rs782768536 1293 dbSNP
rs781911331 1295 dbSNP
rs782545464 1303 dbSNP
rs1281950949 1307 dbSNP
rs782586671 1311 dbSNP
rs1351082159 1325 dbSNP
rs896875673 1330 dbSNP
rs997940325 1333 dbSNP
rs1450286392 1334 dbSNP
rs1381488872 1346 dbSNP
rs1336803684 1356 dbSNP
rs1454290067 1362 dbSNP
rs1343039866 1366 dbSNP
rs1157860128 1378 dbSNP
rs1029301298 1383 dbSNP
rs889448139 1387 dbSNP
rs1006600665 1394 dbSNP
rs1033325705 1395 dbSNP
rs1409094784 1414 dbSNP
rs957340267 1424 dbSNP
rs1443325434 1428 dbSNP
rs1242675445 1433 dbSNP
rs1184266825 1438 dbSNP
rs989020532 1439 dbSNP
rs1240613117 1443 dbSNP
rs1215270716 1448 dbSNP
rs1447380100 1453 dbSNP
rs1286005895 1466 dbSNP
rs1243758593 1475 dbSNP
rs35870611 1478 dbSNP
rs1358613352 1486 dbSNP
rs1315188100 1488 dbSNP
rs1359188152 1493 dbSNP
rs1287933054 1495 dbSNP
rs781791434 1508 dbSNP
rs4892374 1510 dbSNP
rs1346225473 1512 dbSNP
rs1300424725 1516 dbSNP
rs781993553 1517 dbSNP
rs782613241 1517 dbSNP
rs192662485 1519 dbSNP
rs1385128924 1522 dbSNP
rs184708638 1527 dbSNP
rs982169042 1529 dbSNP
rs1417398692 1530 dbSNP
rs1186153298 1531 dbSNP
rs1265123362 1536 dbSNP
rs1486308519 1536 dbSNP
rs1219937710 1542 dbSNP
rs1490113546 1543 dbSNP
rs1292433059 1545 dbSNP
rs1223594269 1546 dbSNP
rs1305260275 1552 dbSNP
rs1294224805 1562 dbSNP
rs1214859465 1577 dbSNP
rs1363610931 1579 dbSNP
rs1280539199 1580 dbSNP
rs1403526868 1581 dbSNP
rs1365288937 1582 dbSNP
rs928086137 1591 dbSNP
rs1304295888 1595 dbSNP
rs1459839026 1596 dbSNP
rs1352906320 1601 dbSNP
rs1169797396 1606 dbSNP
rs1429378467 1613 dbSNP
rs1426086910 1637 dbSNP
rs781873798 1648 dbSNP
rs1479993343 1652 dbSNP
rs990803672 1666 dbSNP
rs1269246948 1675 dbSNP
rs1192915230 1679 dbSNP
rs1479608089 1683 dbSNP
rs1250323755 1686 dbSNP
rs376991245 1689 dbSNP
rs1204574057 1699 dbSNP
rs1319340183 1702 dbSNP
rs910097444 1706 dbSNP
rs1222460176 1715 dbSNP
rs1345281673 1716 dbSNP
rs1389082764 1722 dbSNP
rs1371767669 1728 dbSNP
rs941640409 1736 dbSNP
rs1462581028 1746 dbSNP
rs1402474063 1754 dbSNP
rs1174546766 1771 dbSNP
rs1469476061 1785 dbSNP
rs1429803962 1788 dbSNP
rs782417101 1789 dbSNP
rs782667330 1793 dbSNP
rs1417288047 1796 dbSNP
rs1037568345 1801 dbSNP
rs1177666750 1815 dbSNP
rs1458725268 1825 dbSNP
rs897329990 1834 dbSNP
rs1202715580 1836 dbSNP
rs1323791673 1859 dbSNP
rs782197976 1861 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     :||||||||| 
Target 5' -----cucuccUCUCCUUCCCu 3'
1 - 17
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000373521.2 | 3UTR | CUCUCCUCUCCUUCCCUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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