miRTarBase - #MIRT488337


—
pre-miRNA Information
pre-miRNA hsa-mir-4280   
Genomic Coordinates chr5: 87114879 - 87114954
Description Homo sapiens miR-4280 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4280
Sequence 11| GAGUGUAGUUCUGAGCAGAGC |31
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1267452683 6 dbSNP
rs921418201 13 dbSNP
rs975577876 15 dbSNP
rs562687273 20 dbSNP
rs968639930 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SCD   
Synonyms FADS5, MSTP008, SCD1, SCDOS, hSCD1
Description stearoyl-CoA desaturase
Transcript NM_005063   
Expression
Putative miRNA Targets on SCD
3'UTR of SCD
(miRNA target sites are highlighted)		 
>SCD|NM_005063|3'UTR
   1 GTTTGGGGTCCCTCAGGTTCCTTTTTCAAAAACCAGCCAGGCAGAGGTTTTAATGTCTGTTTATTAACTACTGAATAATG
  81 CTACCAGGATGCTAAAGATGATGATGTTAACCCATTCCAGTACAGTATTCTTTTAAAATTCAAAAGTATTGAAAGCCAAC
 161 AACTCTGCCTTTATGATGCTAAGCTGATATTATTTCTTCTCTTATCCTCTCTCTCTTCTAGGCCCATTGTCCTCCTTTTC
 241 ACTTTATTGCTATCGCCCTCCTTTCCCTTATTGCCTCCCAGGCAAGCAGCTGGTCAGTCTTTGCTCAGTGTCCAGCTTCC
 321 AAAGCCTAGACAACCTTTCTGTAGCCTAAAACGAATGGTCTTTGCTCCAGATAACTCTCTTTCCTTGAGCTGTTGTGAGC
 401 TTTGAAGTAGGTGGCTTGAGCTAGAGATAAAACAGAATCTTCTGGGTAGTCCCCTGTTGATTATCTTCAGCCCAGGCTTT
 481 TGCTAGATGGAATGGAAAAGCAACTTCATTTGACACAAAGCTTCTAAAGCAGGTAAATTGTCGGGGGAGAGAGTTAGCAT
 561 GTATGAATGTAAGGATGAGGGAAGCGAAGCAAGAGGAACCTCTCGCCATGATCAGACATACAGCTGCCTACCTAATGAGG
 641 ACTTCAAGCCCCACCACATAGCATGCTTCCTTTCTCTCCTGGCTCGGGGTAAAAAGTGGCTGCGGTGTTTGGCAATGCTA
 721 ATTCAATGCCGCAACATATAGTTGAGGCCGAGGATAAAGAAAAGACATTTTAAGTTTGTAGTAAAAGTGGTCTCTGCTGG
 801 GGAAGGGTTTTCTTTTCTTTTTTTCTTTAATAACAAGGAGATTTCTTAGTTCATATATCAAGAAGTCTTGAAGTTGGGTG
 881 TTTCCAGAATTGGTAAAAACAGCAGCTCATAGAATTTTGAGTATTCCATGAGCTGCTCATTACAGTTCTTTCCTCTTTCT
 961 GCTCTGCCATCTTCAGGATATTGGTTCTTCCCCTCATAGTAATAAGATGGCTGTGGCATTTCCAAACATCCAAAAAAAGG
1041 GAAGGATTTAAGGAGGTGAAGTCGGGTCAAAAATAAAATATATATACATATATACATTGCTTAGAACGTTAAACTATTAG
1121 AGTATTTCCCTTCCAAAGAGGGATGTTTGGAAAAAACTCTGAAGGAGAGGAGGAATTAGTTGGGATGCCAATTTCCTCTC
1201 CACTGCTGGACATGAGATGGAGAGGCTGAGGGACAGGATCTATAGGCAGCTTCTAAGAGCGAACTTCACATAGGAAGGGA
1281 TCTGAGAACACGTTGCCAGGGGCTTGAGAAGGTTACTGAGTGAGTTATTGGGAGTCTTAATAAAATAAACTAGATATTAG
1361 GTCCATTCATTAATTAGTTCCAGTTTCTCCTTGAAATGAGTAAAAACTAGAAGGCTTCTCTCCACAGTGTTGTGCCCCTT
1441 CACTCATTTTTTTTTGAGGAGAAGGGGGTCTCTGTTAACATCTAGCCTAAAGTATACAACTGCCTGGGGGGCAGGGTTAG
1521 GAATCTCTTCACTACCCTGATTCTTGATTCCTGGCTCTACCCTGTCTGTCCCTTTTCTTTGACCAGATCTTTCTCTTCCC
1601 TGAACGTTTTCTTCTTTCCCTGGACAGGCAGCCTCCTTTGTGTGTATTCAGAGGCAGTGATGACTTGCTGTCCAGGCAGC
1681 TCCCTCCTGCACACAGAATGCTCAGGGTCACTGAACCACTGCTTCTCTTTTGAAAGTAGAGCTAGCTGCCACTTTCACGT
1761 GGCCTCCGCAGTGTCTCCACCTACACCCCTGTGCTCCCCTGCCACACTGATGGCTCAAGACAAGGCTGGCAAACCCTCCC
1841 AGAAACATCTCTGGCCCAGAAAGCCTCTCTCTCCCTCCCTCTCTCATGAGGCACAGCCAAGCCAAGCGCTCATGTTGAGC
1921 CAGTGGGCCAGCCACAGAGCAAAAGAGGGTTTATTTTCAGTCCCCTCTCTCTGGGTCAGAACCAGAGGGCATGCTGAATG
2001 CCCCCTGCTTACTTGGTGAGGGTGCCCCGCCTGAGTCAGTGCTCTCAGCTGGCAGTGCAATGCTTGTAGAAGTAGGAGGA
2081 AACAGTTCTCACTGGGAAGAAGCAAGGGCAAGAACCCAAGTGCCTCACCTCGAAAGGAGGCCCTGTTCCCTGGAGTCAGG
2161 GTGAACTGCAAAGCTTTGGCTGAGACCTGGGATTTGAGATACCACAAACCCTGCTGAACACAGTGTCTGTTCAGCAAACT
2241 AACCAGCATTCCCTACAGCCTAGGGCAGACAATAGTATAGAAGTCTGGAAAAAAACAAAAACAGAATTTGAGAACCTTGG
2321 ACCACTCCTGTCCCTGTAGCTCAGTCATCAAAGCAGAAGTCTGGCTTTGCTCTATTAAGATTGGAAATGTACACTACCAA
2401 ACACTCAGTCCACTGTTGAGCCCCAGTGCTGGAAGGGAGGAAGGCCTTTCTTCTGTGTTAATTGCGTAGAGGCTACAGGG
2481 GTTAGCCTGGACTAAAGGCATCCTTGTCTTTTGAGCTATTCACCTCAGTAGAAAAGGATCTAAGGGAAGATCACTGTAGT
2561 TTAGTTCTGTTGACCTGTGCACCTACCCCTTGGAAATGTCTGCTGGTATTTCTAATTCCACAGGTCATCAGATGCCTGCT
2641 TGATAATATATAAACAATAAAAACAACTTTCACTTCTTCCTATTGTAATCGTGTGCCATGGATCTGATCTGTACCATGAC
2721 CCTACATAAGGCTGGATGGCACCTCAGGCTGAGGGCCCCAATGTATGTGTGGCTGTGGGTGTGGGTGGGAGTGTGTCTGC
2801 TGAGTAAGGAACACGATTTTCAAGATTCTAAAGCTCAATTCAAGTGACACATTAATGATAAACTCAGATCTGATCAAGAG
2881 TCCGGATTTCTAACAGTCCTTGCTTTGGGGGGTGTGCTGACAACTTAGCTCAGGTGCCTTACATCTTTTCTAATCACAGT
2961 GTTGCATATGAGCCTGCCCTCACTCCCTCTGCAGAATCCCTTTGCACCTGAGACCCTACTGAAGTGGCTGGTAGAAAAAG
3041 GGGCCTGAGTGGAGGATTATCAGTATCACGATTTGCAGGATTCCCTTCTGGGCTTCATTCTGGAAACTTTTGTTAGGGCT
3121 GCTTTTCTTAAGTGCCCACATTTGATGGAGGGTGGAAATAATTTGAATGTATTTGATTTATAAGTTTTTTTTTTTTTTTT
3201 GGGTTAAAAGATGGTTGTAGCATTTAAAATGGAAAATTTTCTCCTTGGTTTGCTAGTATCTTGGGTGTATTCTCTGTAAG
3281 TGTAGCTCAAATAGGTCATCATGAAAGGTTAAAAAAGCGAGGTGGCCATGTTATGCTGGTGGTTAAGGCCAGGGCCTCTC
3361 CAACCACTGTGCCACTGACTTGCTGTGTGACCCTGGGCAAGTCACTTAACTATAAGGTGCCTCAGTTTTCCTTCTGTTAA
3441 AATGGGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTTTGGGATC
3521 CTTCAGCACAGGAATTCTCAAGACCTGAGTATTTTTTATAATAGGAATGTCCACCATGAACTTGATACGTCCGTGTGTCC
3601 CAGATGCTGTCATTAGTCTATATGGTTCTCCAAGAAACTGAATGAATCCATTGGAGAAGCGGTGGATAACTAGCCAGACA
3681 AAATTTGAGAATACATAAACAACGCATTGCCACGGAAACATACAGAGGATGCCTTTTCTGTGATTGGGTGGGATTTTTTC
3761 CCTTTTTATGTGGGATATAGTAGTTACTTGTGACAAGAATAATTTTGGAATAATTTCTATTAATATCAACTCTGAAGCTA
3841 ATTGTACTAATCTGAGATTGTGTTTGTTCATAATAAAAGTGAAGTGAATCTGATTGCAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgagAC-GAGUCUUGAUGUGag 5'
              || |||  | ||||||  
Target 5' gcagTGTCTC-CACCTACACcc 3'
 1768 - 1788 128.00 -10.20
2 
miRNA  3' cgaGACGAGUCUU--GAUGUGAg 5'
             :||||:||||  :|| ||| 
Target 5' acaTTGCTTAGAACGTTAAACTa 3'
 1094 - 1116 124.00 -16.10
3 
miRNA  3' cgAGACGAGUCUUGAUGUGAg 5'
            ||| :||   ||||| || 
Target 5' aaTCTCTTC---ACTACCCTg 3'
 1522 - 1539 124.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30525900 22 COSMIC
COSN31613560 38 COSMIC
COSN30461973 89 COSMIC
COSN31602595 133 COSMIC
COSN31547196 140 COSMIC
COSN24030025 207 COSMIC
COSN31539138 230 COSMIC
COSN21478896 365 COSMIC
COSN1466663 535 COSMIC
COSN15953448 568 COSMIC
COSN1466664 1246 COSMIC
COSN20915800 1262 COSMIC
COSN15668366 1469 COSMIC
COSN19559096 1493 COSMIC
COSN21218354 1493 COSMIC
COSN5246093 1602 COSMIC
COSN1466665 2122 COSMIC
COSN27021628 2421 COSMIC
COSN5276218 2686 COSMIC
COSN31582558 2774 COSMIC
COSN31595848 2852 COSMIC
COSN6955424 2882 COSMIC
COSN20107491 2913 COSMIC
COSN1111055 3201 COSMIC
COSN22119618 3363 COSMIC
COSN22120151 3406 COSMIC
COSN22119387 3417 COSMIC
COSN22897629 3448 COSMIC
COSM6200387 3588 COSMIC
COSM8822786 3818 COSMIC
COSM4944708 3841 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs764860642 3 dbSNP
rs1474512973 4 dbSNP
rs752417108 5 dbSNP
rs752956505 5 dbSNP
rs758054030 6 dbSNP
rs1457082616 9 dbSNP
rs777488809 16 dbSNP
rs1361363426 22 dbSNP
rs201774588 25 dbSNP
rs567764269 29 dbSNP
rs757176296 30 dbSNP
rs1415231259 38 dbSNP
rs200181676 47 dbSNP
rs1426855108 48 dbSNP
rs745935642 52 dbSNP
rs907228412 58 dbSNP
rs200593770 67 dbSNP
rs1462793389 68 dbSNP
rs139597468 71 dbSNP
rs1350689070 89 dbSNP
rs1191699819 99 dbSNP
rs894573849 116 dbSNP
rs1261856806 143 dbSNP
rs1199497334 145 dbSNP
rs1203039660 151 dbSNP
rs1251206355 157 dbSNP
rs1289103906 157 dbSNP
rs1481060133 163 dbSNP
rs199949930 164 dbSNP
rs1339857817 167 dbSNP
rs1179210624 175 dbSNP
rs1252780296 188 dbSNP
rs182652611 191 dbSNP
rs1431287007 195 dbSNP
rs202170126 209 dbSNP
rs1026796490 210 dbSNP
rs1175265381 219 dbSNP
rs199822748 224 dbSNP
rs1302798318 227 dbSNP
rs1392136825 242 dbSNP
rs1399090915 246 dbSNP
rs201171367 250 dbSNP
rs202056793 253 dbSNP
rs1461976337 256 dbSNP
rs1176576218 259 dbSNP
rs1481120491 267 dbSNP
rs1266088933 289 dbSNP
rs1197762834 290 dbSNP
rs200546686 292 dbSNP
rs201284457 293 dbSNP
rs1019942902 302 dbSNP
rs1369432063 305 dbSNP
rs1442457990 307 dbSNP
rs201705849 309 dbSNP
rs965111249 316 dbSNP
rs200271916 322 dbSNP
rs539202331 323 dbSNP
rs1263653245 330 dbSNP
rs201198199 334 dbSNP
rs199785846 336 dbSNP
rs557394444 338 dbSNP
rs1240050304 348 dbSNP
rs957786137 353 dbSNP
rs1226885635 354 dbSNP
rs1446471471 364 dbSNP
rs1273973194 365 dbSNP
rs1468662970 368 dbSNP
rs989203750 370 dbSNP
rs1470345896 374 dbSNP
rs1365149769 375 dbSNP
rs569502642 375 dbSNP
rs1179452604 378 dbSNP
rs1457169932 383 dbSNP
rs200647198 393 dbSNP
rs201499391 395 dbSNP
rs1263968441 398 dbSNP
rs547780942 413 dbSNP
rs1205790246 414 dbSNP
rs535879757 421 dbSNP
rs1488279381 423 dbSNP
rs199655775 429 dbSNP
rs752398717 434 dbSNP
rs1055737618 447 dbSNP
rs894459521 448 dbSNP
rs200741043 460 dbSNP
rs1253415485 464 dbSNP
rs201934124 477 dbSNP
rs572492928 478 dbSNP
rs1451169226 498 dbSNP
rs1359092114 508 dbSNP
rs199887991 518 dbSNP
rs1332974211 526 dbSNP
rs762565528 532 dbSNP
rs995573808 543 dbSNP
rs200593145 544 dbSNP
rs149747792 546 dbSNP
rs1418151527 551 dbSNP
rs1410112837 556 dbSNP
rs1385644175 560 dbSNP
rs1185189187 564 dbSNP
rs1442783489 569 dbSNP
rs200132173 571 dbSNP
rs1194060016 576 dbSNP
rs1347695850 586 dbSNP
rs200930445 587 dbSNP
rs202164681 594 dbSNP
rs1457115787 601 dbSNP
rs1326951060 605 dbSNP
rs199988897 606 dbSNP
rs996747250 609 dbSNP
rs1327682469 614 dbSNP
rs1295742047 628 dbSNP
rs1028010533 630 dbSNP
rs1365809200 635 dbSNP
rs200922457 637 dbSNP
rs201906122 638 dbSNP
rs117048523 639 dbSNP
rs200201838 640 dbSNP
rs1240445218 644 dbSNP
rs913644318 646 dbSNP
rs967610085 649 dbSNP
rs767458042 654 dbSNP
rs1297586314 661 dbSNP
rs1274070070 663 dbSNP
rs201122931 665 dbSNP
rs978002050 670 dbSNP
rs928792714 673 dbSNP
rs1398821572 675 dbSNP
rs1216335966 683 dbSNP
rs1310672856 684 dbSNP
rs1321292742 686 dbSNP
rs202061407 687 dbSNP
rs1214583605 690 dbSNP
rs1273545182 695 dbSNP
rs200555753 698 dbSNP
rs576983826 704 dbSNP
rs201602476 705 dbSNP
rs1411655859 711 dbSNP
rs1421350339 722 dbSNP
rs199570539 731 dbSNP
rs1480817028 741 dbSNP
rs1431486278 742 dbSNP
rs1488244976 747 dbSNP
rs1233873267 748 dbSNP
rs61873072 748 dbSNP
rs544360114 750 dbSNP
rs1187714633 751 dbSNP
rs991685600 754 dbSNP
rs79791375 760 dbSNP
rs931306492 775 dbSNP
rs1323666573 776 dbSNP
rs1048501735 787 dbSNP
rs201413718 791 dbSNP
rs1217132176 795 dbSNP
rs199790025 800 dbSNP
rs200481287 803 dbSNP
rs201925228 834 dbSNP
rs199632168 835 dbSNP
rs1298574792 838 dbSNP
rs200922697 856 dbSNP
rs779792978 868 dbSNP
rs41290540 873 dbSNP
rs199922700 881 dbSNP
rs1346243898 888 dbSNP
rs1408401821 890 dbSNP
rs3978768 890 dbSNP
rs201529592 906 dbSNP
rs1301120543 909 dbSNP
rs3178760 912 dbSNP
rs778391019 920 dbSNP
rs1179371123 927 dbSNP
rs1028228245 957 dbSNP
rs893507757 960 dbSNP
rs1295424142 963 dbSNP
rs1327352710 966 dbSNP
rs1463002507 967 dbSNP
rs200117574 968 dbSNP
rs547144536 978 dbSNP
rs200751972 993 dbSNP
rs1283322626 1000 dbSNP
rs1020599566 1017 dbSNP
rs966876598 1019 dbSNP
rs202168675 1020 dbSNP
rs1447472241 1028 dbSNP
rs1374386991 1037 dbSNP
rs200421599 1039 dbSNP
rs1453357882 1056 dbSNP
rs1217916141 1057 dbSNP
rs1301214056 1058 dbSNP
rs1235222808 1061 dbSNP
rs201280929 1064 dbSNP
rs1036295148 1065 dbSNP
rs1161599221 1066 dbSNP
rs1419484874 1080 dbSNP
rs1471413226 1082 dbSNP
rs960221714 1085 dbSNP
rs1409207985 1086 dbSNP
rs202132877 1091 dbSNP
rs200175308 1095 dbSNP
rs1402917574 1096 dbSNP
rs201309615 1097 dbSNP
rs1374922638 1100 dbSNP
rs1415408146 1108 dbSNP
rs186972172 1109 dbSNP
rs200379842 1115 dbSNP
rs201611961 1117 dbSNP
rs1246395414 1120 dbSNP
rs11557927 1127 dbSNP
rs867378366 1134 dbSNP
rs1310517109 1139 dbSNP
rs1395347529 1140 dbSNP
rs11557930 1151 dbSNP
rs536990985 1157 dbSNP
rs984093587 1170 dbSNP
rs1290649765 1174 dbSNP
rs1398448619 1192 dbSNP
rs1360128743 1196 dbSNP
rs1164657208 1206 dbSNP
rs1426969977 1209 dbSNP
rs1351196841 1219 dbSNP
rs200682385 1224 dbSNP
rs1164695440 1225 dbSNP
rs1429564831 1231 dbSNP
rs201997986 1234 dbSNP
rs199840244 1242 dbSNP
rs901028219 1251 dbSNP
rs200414320 1262 dbSNP
rs1222711170 1266 dbSNP
rs1358247139 1267 dbSNP
rs781638547 1271 dbSNP
rs1243994557 1273 dbSNP
rs1049711552 1292 dbSNP
rs191343441 1293 dbSNP
rs1180692111 1294 dbSNP
rs1398194721 1303 dbSNP
rs1339868395 1307 dbSNP
rs1233788632 1309 dbSNP
rs1304011431 1311 dbSNP
rs200013902 1312 dbSNP
rs1406924137 1317 dbSNP
rs201303736 1328 dbSNP
rs183444946 1335 dbSNP
rs1293287555 1350 dbSNP
rs576831972 1367 dbSNP
rs1463000654 1390 dbSNP
rs1021059669 1397 dbSNP
rs1172249686 1400 dbSNP
rs1394949977 1410 dbSNP
rs746176479 1410 dbSNP
rs1435913829 1415 dbSNP
rs1175554947 1419 dbSNP
rs1476569698 1423 dbSNP
rs902161458 1423 dbSNP
rs537646546 1429 dbSNP
rs1003734817 1432 dbSNP
rs1265076446 1433 dbSNP
rs199913930 1438 dbSNP
rs201056423 1444 dbSNP
rs200946078 1447 dbSNP
rs960525142 1447 dbSNP
rs1329863078 1448 dbSNP
rs202084165 1457 dbSNP
rs1283941642 1459 dbSNP
rs1235767241 1464 dbSNP
rs1329555113 1464 dbSNP
rs1444020612 1469 dbSNP
rs1023056302 1470 dbSNP
rs1399026653 1486 dbSNP
rs1329951423 1487 dbSNP
rs200415659 1493 dbSNP
rs10883465 1498 dbSNP
rs1176504509 1502 dbSNP
rs201999811 1503 dbSNP
rs984313022 1504 dbSNP
rs1370096006 1506 dbSNP
rs1197968186 1509 dbSNP
rs574539009 1510 dbSNP
rs1239700536 1516 dbSNP
rs1234964220 1519 dbSNP
rs779103866 1523 dbSNP
rs1196687685 1528 dbSNP
rs200270686 1538 dbSNP
rs1202214324 1540 dbSNP
rs201672188 1548 dbSNP
rs199742751 1551 dbSNP
rs1343195040 1557 dbSNP
rs1274506310 1566 dbSNP
rs200311908 1569 dbSNP
rs1379582389 1575 dbSNP
rs201388214 1586 dbSNP
rs1307458960 1587 dbSNP
rs199725693 1590 dbSNP
rs1446775457 1594 dbSNP
rs1384179638 1601 dbSNP
rs879382088 1602 dbSNP
rs1334290652 1606 dbSNP
rs200641449 1607 dbSNP
rs766488637 1609 dbSNP
rs11835 1612 dbSNP
rs1194860082 1615 dbSNP
rs977274283 1624 dbSNP
rs1382002426 1626 dbSNP
rs201296477 1629 dbSNP
rs1176536309 1653 dbSNP
rs922706735 1662 dbSNP
rs1243651434 1663 dbSNP
rs932682779 1672 dbSNP
rs1440803054 1673 dbSNP
rs1277925430 1694 dbSNP
rs199561853 1695 dbSNP
rs1049603378 1703 dbSNP
rs1356112847 1707 dbSNP
rs200688555 1710 dbSNP
rs1439211672 1713 dbSNP
rs1239839472 1726 dbSNP
rs1360855295 1727 dbSNP
rs1286492103 1728 dbSNP
rs113081211 1737 dbSNP
rs200101634 1738 dbSNP
rs1042296520 1743 dbSNP
rs200685078 1744 dbSNP
rs188943803 1759 dbSNP
rs199951405 1760 dbSNP
rs1156661972 1765 dbSNP
rs201105040 1768 dbSNP
rs532592515 1769 dbSNP
rs1160625779 1786 dbSNP
rs1164938006 1790 dbSNP
rs202167951 1791 dbSNP
rs1237039271 1794 dbSNP
rs199862034 1798 dbSNP
rs192907209 1799 dbSNP
rs185115720 1800 dbSNP
rs1261278412 1808 dbSNP
rs1475166437 1809 dbSNP
rs530208861 1812 dbSNP
rs1360659492 1822 dbSNP
rs894907567 1826 dbSNP
rs767596338 1849 dbSNP
rs189941004 1851 dbSNP
rs1356254768 1855 dbSNP
rs750238551 1859 dbSNP
rs1023107043 1865 dbSNP
rs1323599078 1868 dbSNP
rs1393503396 1870 dbSNP
rs1341778885 1874 dbSNP
rs202206676 1882 dbSNP
rs566786861 1885 dbSNP
rs776487114 1886 dbSNP
rs200513569 1888 dbSNP
rs1325267936 1895 dbSNP
rs201772792 1895 dbSNP
rs1225990356 1906 dbSNP
rs201709931 1908 dbSNP
rs200272972 1909 dbSNP
rs7849 1914 dbSNP
rs1193229658 1915 dbSNP
rs1272924109 1926 dbSNP
rs551709274 1932 dbSNP
rs954129689 1933 dbSNP
rs985526007 1934 dbSNP
rs755216268 1941 dbSNP
rs1274345487 1946 dbSNP
rs1201027412 1953 dbSNP
rs915108918 1962 dbSNP
rs1275695985 1965 dbSNP
rs199828583 1965 dbSNP
rs946526783 1968 dbSNP
rs766183375 1974 dbSNP
rs374976104 1988 dbSNP
rs1367863914 1989 dbSNP
rs1216095586 1990 dbSNP
rs200637733 2002 dbSNP
rs570349352 2003 dbSNP
rs1434006651 2006 dbSNP
rs1349044569 2010 dbSNP
rs1331997978 2013 dbSNP
rs201392569 2016 dbSNP
rs1398272290 2017 dbSNP
rs537986911 2021 dbSNP
rs11557934 2023 dbSNP
rs574603448 2029 dbSNP
rs200814265 2030 dbSNP
rs1239098408 2053 dbSNP
rs1181070008 2058 dbSNP
rs1471915093 2080 dbSNP
rs780987296 2084 dbSNP
rs1255681396 2087 dbSNP
rs894789774 2088 dbSNP
rs1416878752 2091 dbSNP
rs1461825730 2093 dbSNP
rs201900191 2095 dbSNP
rs1217079347 2097 dbSNP
rs199883101 2117 dbSNP
rs1011974346 2128 dbSNP
rs1381611831 2132 dbSNP
rs200591724 2133 dbSNP
rs535616935 2143 dbSNP
rs1327734906 2149 dbSNP
rs1466636563 2151 dbSNP
rs1005714255 2159 dbSNP
rs201783438 2167 dbSNP
rs1174225161 2172 dbSNP
rs200118356 2185 dbSNP
rs1016136405 2186 dbSNP
rs1438429913 2191 dbSNP
rs961655692 2195 dbSNP
rs201045719 2203 dbSNP
rs1182905428 2204 dbSNP
rs117080339 2221 dbSNP
rs1483310973 2221 dbSNP
rs577910029 2229 dbSNP
rs1335083475 2230 dbSNP
rs200044525 2256 dbSNP
rs1286521247 2257 dbSNP
rs200925958 2263 dbSNP
rs1351167616 2267 dbSNP
rs954015721 2268 dbSNP
rs1235460266 2273 dbSNP
rs778446356 2274 dbSNP
rs201903818 2279 dbSNP
rs200200425 2281 dbSNP
rs201120134 2284 dbSNP
rs1381445369 2286 dbSNP
rs202208032 2290 dbSNP
rs145559168 2293 dbSNP
rs1361377841 2297 dbSNP
rs565329840 2301 dbSNP
rs1206277981 2303 dbSNP
rs1022387748 2306 dbSNP
rs1418283509 2324 dbSNP
rs1380035924 2328 dbSNP
rs201778976 2331 dbSNP
rs1415412981 2338 dbSNP
rs560792 2354 dbSNP
rs1258421865 2360 dbSNP
rs1476323522 2365 dbSNP
rs1218288747 2366 dbSNP
rs1487188212 2370 dbSNP
rs1199493365 2371 dbSNP
rs200422535 2388 dbSNP
rs1259868743 2404 dbSNP
rs1245502170 2406 dbSNP
rs1323430715 2421 dbSNP
rs777221729 2431 dbSNP
rs1166777975 2435 dbSNP
rs1227789618 2437 dbSNP
rs201411266 2440 dbSNP
rs1300320475 2443 dbSNP
rs1398315622 2446 dbSNP
rs765118110 2446 dbSNP
rs199789966 2451 dbSNP
rs1294478632 2453 dbSNP
rs200495601 2466 dbSNP
rs201699117 2467 dbSNP
rs199641905 2468 dbSNP
rs939300062 2486 dbSNP
rs1311757276 2487 dbSNP
rs200817705 2488 dbSNP
rs1474610266 2492 dbSNP
rs202063936 2501 dbSNP
rs1416274575 2507 dbSNP
rs199862340 2509 dbSNP
rs200848153 2510 dbSNP
rs201529514 2522 dbSNP
rs200120533 2523 dbSNP
rs769262852 2524 dbSNP
rs774593638 2539 dbSNP
rs1346346844 2542 dbSNP
rs1263635520 2545 dbSNP
rs1048836673 2581 dbSNP
rs887529783 2582 dbSNP
rs201019171 2588 dbSNP
rs1326040183 2599 dbSNP
rs1037214474 2608 dbSNP
rs562810300 2614 dbSNP
rs1302466650 2617 dbSNP
rs114724565 2632 dbSNP
rs200413586 2635 dbSNP
rs998477320 2637 dbSNP
rs17113180 2648 dbSNP
rs202231880 2650 dbSNP
rs1400463907 2653 dbSNP
rs200173927 2656 dbSNP
rs1006901835 2659 dbSNP
rs1372124343 2665 dbSNP
rs1199071819 2667 dbSNP
rs1434720389 2668 dbSNP
rs1264924533 2670 dbSNP
rs1192952130 2677 dbSNP
rs1458149773 2678 dbSNP
rs1260156544 2679 dbSNP
rs1022273184 2682 dbSNP
rs1256839112 2686 dbSNP
rs141381265 2691 dbSNP
rs978559558 2692 dbSNP
rs1448252083 2693 dbSNP
rs1030855696 2701 dbSNP
rs960807386 2702 dbSNP
rs56789731 2708 dbSNP
rs1375560984 2718 dbSNP
rs1395095314 2719 dbSNP
rs916494754 2721 dbSNP
rs760947499 2732 dbSNP
rs1467213985 2736 dbSNP
rs1375780871 2742 dbSNP
rs1172781329 2745 dbSNP
rs1440288134 2746 dbSNP
rs947934080 2748 dbSNP
rs570462548 2749 dbSNP
rs200391558 2754 dbSNP
rs201565551 2755 dbSNP
rs867830989 2758 dbSNP
rs1437315875 2760 dbSNP
rs1256883325 2762 dbSNP
rs199542835 2763 dbSNP
rs1296151550 2766 dbSNP
rs1280118300 2767 dbSNP
rs1343129393 2767 dbSNP
rs1373046564 2768 dbSNP
rs537420949 2770 dbSNP
rs1307754720 2774 dbSNP
rs565100685 2774 dbSNP
rs200818785 2779 dbSNP
rs201773028 2780 dbSNP
rs199796987 2784 dbSNP
rs1309635831 2796 dbSNP
rs1036509552 2801 dbSNP
rs1369376764 2805 dbSNP
rs11557933 2806 dbSNP
rs897356229 2813 dbSNP
rs1056901 2815 dbSNP
rs201375122 2829 dbSNP
rs1381859930 2837 dbSNP
rs200019589 2839 dbSNP
rs200925833 2841 dbSNP
rs11557929 2842 dbSNP
rs1202693079 2844 dbSNP
rs1469551325 2846 dbSNP
rs202067208 2861 dbSNP
rs1189669322 2862 dbSNP
rs1250908256 2868 dbSNP
rs199820760 2884 dbSNP
rs535657869 2885 dbSNP
rs1217570180 2900 dbSNP
rs1357670727 2907 dbSNP
rs201170987 2907 dbSNP
rs201913197 2907 dbSNP
rs202055369 2909 dbSNP
rs1246373534 2910 dbSNP
rs200418976 2916 dbSNP
rs1239807189 2917 dbSNP
rs1362285059 2925 dbSNP
rs553964700 2930 dbSNP
rs1400083344 2932 dbSNP
rs1031494051 2938 dbSNP
rs960609000 2946 dbSNP
rs201219316 2949 dbSNP
rs2027450 2951 dbSNP
rs202007019 2952 dbSNP
rs200291889 2956 dbSNP
rs201498918 2958 dbSNP
rs1478919990 2959 dbSNP
rs202233211 2968 dbSNP
rs1167708239 2969 dbSNP
rs1353501086 2973 dbSNP
rs984648205 2974 dbSNP
rs200236938 2987 dbSNP
rs201498417 2989 dbSNP
rs1292677650 2990 dbSNP
rs908908108 2993 dbSNP
rs1300233851 2994 dbSNP
rs962008104 2999 dbSNP
rs199691175 3008 dbSNP
rs1304900142 3009 dbSNP
rs923016259 3020 dbSNP
rs200645099 3033 dbSNP
rs201258649 3044 dbSNP
rs1373839702 3046 dbSNP
rs199575627 3053 dbSNP
rs1459758584 3054 dbSNP
rs11557936 3058 dbSNP
rs577186805 3063 dbSNP
rs1171476138 3070 dbSNP
rs1294976799 3071 dbSNP
rs1308257897 3072 dbSNP
rs200542011 3073 dbSNP
rs1478562096 3079 dbSNP
rs201777523 3084 dbSNP
rs1248756661 3093 dbSNP
rs1229933822 3108 dbSNP
rs1051280550 3111 dbSNP
rs1259722837 3113 dbSNP
rs911371173 3120 dbSNP
rs200128911 3122 dbSNP
rs1043986791 3123 dbSNP
rs200598376 3127 dbSNP
rs2182351 3128 dbSNP
rs1276382962 3150 dbSNP
rs1253474750 3161 dbSNP
rs1438711488 3165 dbSNP
rs1489430684 3178 dbSNP
rs1184218386 3179 dbSNP
rs1332190160 3181 dbSNP
rs1370121128 3181 dbSNP
rs1418219683 3182 dbSNP
rs1428724311 3184 dbSNP
rs1181006350 3185 dbSNP
rs1481331432 3185 dbSNP
rs200326845 3185 dbSNP
rs201897423 3185 dbSNP
rs201898361 3185 dbSNP
rs199961605 3186 dbSNP
rs1416143977 3187 dbSNP
rs201111034 3190 dbSNP
rs202174784 3191 dbSNP
rs1327013645 3195 dbSNP
rs1052405933 3201 dbSNP
rs1346824618 3201 dbSNP
rs199866728 3201 dbSNP
rs201174253 3202 dbSNP
rs1429275059 3203 dbSNP
rs61873073 3204 dbSNP
rs1371349544 3213 dbSNP
rs191864455 3215 dbSNP
rs896569933 3217 dbSNP
rs556625640 3218 dbSNP
rs1288329840 3227 dbSNP
rs1362804167 3234 dbSNP
rs200556063 3241 dbSNP
rs1434519266 3242 dbSNP
rs1381237472 3245 dbSNP
rs1216531940 3249 dbSNP
rs765121485 3256 dbSNP
rs1334448241 3261 dbSNP
rs1023441344 3272 dbSNP
rs1273603000 3275 dbSNP
rs1323400678 3278 dbSNP
rs201613750 3283 dbSNP
rs201681706 3288 dbSNP
rs1208233204 3291 dbSNP
rs1485227364 3298 dbSNP
rs1485947821 3302 dbSNP
rs1218785334 3307 dbSNP
rs1315021390 3311 dbSNP
rs969181373 3312 dbSNP
rs1228983902 3315 dbSNP
rs1381377732 3317 dbSNP
rs1291672331 3318 dbSNP
rs200275371 3319 dbSNP
rs1006129060 3320 dbSNP
rs1300431114 3321 dbSNP
rs1452309982 3322 dbSNP
rs1016593883 3323 dbSNP
rs201159977 3325 dbSNP
rs1166059931 3330 dbSNP
rs1416457720 3335 dbSNP
rs479875 3338 dbSNP
rs674179 3345 dbSNP
rs200588773 3364 dbSNP
rs1419312512 3366 dbSNP
rs201502803 3375 dbSNP
rs765751169 3382 dbSNP
rs1474672483 3383 dbSNP
rs199637049 3392 dbSNP
rs753874495 3398 dbSNP
rs1345853004 3411 dbSNP
rs1206649713 3413 dbSNP
rs1484741649 3417 dbSNP
rs1222127665 3424 dbSNP
rs541916361 3431 dbSNP
rs560355254 3432 dbSNP
rs200928021 3436 dbSNP
rs1341328504 3446 dbSNP
rs1280548873 3449 dbSNP
rs1380910421 3464 dbSNP
rs201907090 3470 dbSNP
rs1355002782 3487 dbSNP
rs1361656494 3489 dbSNP
rs985861294 3494 dbSNP
rs1415658033 3497 dbSNP
rs199893695 3498 dbSNP
rs1460639163 3504 dbSNP
rs11557932 3515 dbSNP
rs15019 3518 dbSNP
rs1194825400 3521 dbSNP
rs1044019858 3532 dbSNP
rs11557931 3533 dbSNP
rs1469762311 3540 dbSNP
rs1251262851 3543 dbSNP
rs1213122198 3555 dbSNP
rs200097234 3559 dbSNP
rs188278561 3568 dbSNP
rs1225437223 3571 dbSNP
rs1307339194 3574 dbSNP
rs202176659 3576 dbSNP
rs199961206 3585 dbSNP
rs201284015 3589 dbSNP
rs201874964 3590 dbSNP
rs1325761164 3592 dbSNP
rs117211150 3593 dbSNP
rs1188272603 3594 dbSNP
rs200813016 3595 dbSNP
rs34341900 3599 dbSNP
rs1006012928 3604 dbSNP
rs1251088128 3605 dbSNP
rs1192890872 3610 dbSNP
rs1176992080 3618 dbSNP
rs200521799 3624 dbSNP
rs201617943 3629 dbSNP
rs180729101 3631 dbSNP
rs1194359182 3639 dbSNP
rs897751821 3639 dbSNP
rs1480410581 3641 dbSNP
rs1171800486 3652 dbSNP
rs993407103 3660 dbSNP
rs1030436368 3661 dbSNP
rs1336474006 3662 dbSNP
rs1241433225 3666 dbSNP
rs200403657 3679 dbSNP
rs954349628 3690 dbSNP
rs187307922 3693 dbSNP
rs1389359894 3697 dbSNP
rs199800024 3704 dbSNP
rs116713435 3705 dbSNP
rs539226813 3706 dbSNP
rs15950 3713 dbSNP
rs925446194 3714 dbSNP
rs1172956544 3725 dbSNP
rs1346597456 3729 dbSNP
rs1440228788 3732 dbSNP
rs1337658866 3734 dbSNP
rs201698963 3745 dbSNP
rs935599700 3752 dbSNP
rs988391104 3754 dbSNP
rs1418526650 3764 dbSNP
rs1257160759 3775 dbSNP
rs1280215300 3775 dbSNP
rs147598044 3778 dbSNP
rs200895916 3784 dbSNP
rs1218073313 3791 dbSNP
rs543602878 3797 dbSNP
rs112842494 3798 dbSNP
rs942100138 3809 dbSNP
rs201893450 3814 dbSNP
rs199861858 3826 dbSNP
rs1394553140 3838 dbSNP
rs1373465445 3845 dbSNP
rs371744085 3853 dbSNP
rs1174405506 3861 dbSNP
rs1401263525 3863 dbSNP
rs1394546292 3865 dbSNP
rs1016875828 3887 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgagacgagucuugAUGUGAg 5'
                        |||||| 
Target 5' ----------aaugUACACUa 3'
 		1 - 11
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177629. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_7 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgagacgagucuugAUGUGAg 5'
                        |||||| 
Target 5' --------------UACACUa 3'
 		1 - 7
Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005063 | 3UTR | AAGUCUGGAAAAAAACAAAAACAGAAUUUGAGAACCUUGGACCACUCCUGUCCCUGUAGCUCAGUCAUCAAAGCAGAAGUCUGGCUUUGCUCUAUUAAGAUUGGAAAUGUACACUACCAAACACUCAGUCCACUGUUGAGCCCCAGUGCUGGAAGGGAGGAAGGCCUUUCUUCUGUGUUAAUUGCGUAGAGGCUACAGGGGUUAGCCUGGACUAAAGGCAUCCUUGUCUUUUGAGCUAUUCACCUCAGUAGAAAAGGAUCUAAGGGAAGAUCACUGUAGUUUAGUUCUGUUGACCUGUGCACCUACCCCUUGGAAAUGUCUGCUGGUAUUUCUAAUUCCACAGGUCAUCAGAUGCCUGCUUGAUAAUAUAUAAACAAUAAAAACAACUUUCACUUCUUCCUAUUGUAAUCGUGUGCCAUGGAUCUGAUCUGUACCAUGACCCUACAUAAGGCUGGAUGGCACCUCAGGCUGAGGGCCCCAAUGUAUGUGUGGCUGUGGGUGUGGGUGGGAGUGUGUCUGCUGAGUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_005063 | 3UTR | AAGUCUGGCUUUGCUCUAUUAAGAUUGGAAAUGUACACUACCAAACACUCAGUCCACUGUUGAGCCCCAGUGCUGGAAGGGAGGAAGGCCUUUCUUCUGUGUUAAUUGCGUAGAGGCUACAGGGGUUAGCCUGGACUAAAGGCAUCCUUGUCUUUUGAGCUAUUCACCUCAGUAGAAAAGGAUCUAAGGGAAGAUCACUGUAGUUUAGUUCUGUUGACCUGUGCACCUACCCCUUGGAAAUGUCUGCUGGUAUUUCUAAUUCCACAGGUCAUCAGAUGCCUGCUUGAUAAUAUAUAAACAAUAAAAACAACUUUCACUUCUUCCUAUUGUAAUCGUGUGCCAUGGAUCUGAUCUGUACCAUGACCCUACAUAAGGCUGGAUGGCACCUCAGGCUGAGGGCCCCAAUGUAUGUGUGGCUGUGGGUGUGGGUGGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_005063 | 3UTR | AAGUCUGGAAAAAAACAAAAACAGAAUUUGAGAACCUUGGACCACUCCUGUCCCUGUAGCUCAGUCAUCAAAGCAGAAGUCUGGCUUUGCUCUAUUAAGAUUGGAAAUGUACACUACCAAACACUCAGUCCACUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005063 | 3UTR | AAGAUUGGAAAUGUACACUACCAAACACUCAGUCCACUGUUGAGCCCCAGUGCUGGAAGGGAGGAAGGCCUUUCUUCUGUGUUAAUUGCGUAGAGGCUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000370355.2 | 3UTR | AAUGUACACUACCAAACACUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-4280 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065612 DAZAP2 DAZ associated protein 2 2 10
MIRT084985 BACH1 BTB domain and CNC homolog 1 2 2
MIRT088053 UBXN2A UBX domain protein 2A 2 4
MIRT097327 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT099148 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT127042 FAM208B family with sequence similarity 208 member B 2 4
MIRT140479 BNIP2 BCL2 interacting protein 2 2 6
MIRT154889 GNAS GNAS complex locus 2 4
MIRT187983 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT190440 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT240673 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT295049 EVI5L ecotropic viral integration site 5 like 2 2
MIRT324749 ACER2 alkaline ceramidase 2 2 2
MIRT366075 FAM127A retrotransposon Gag like 8C 2 4
MIRT442625 LOX lysyl oxidase 2 2
MIRT445224 TYRP1 tyrosinase related protein 1 2 2
MIRT448967 CCNT2 cyclin T2 2 4
MIRT450137 PFN4 profilin family member 4 2 2
MIRT464350 USP46 ubiquitin specific peptidase 46 2 2
MIRT470460 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT473691 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT480188 CALM2 calmodulin 2 2 6
MIRT486355 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT486708 TROVE2 TROVE domain family member 2 2 4
MIRT488337 SCD stearoyl-CoA desaturase 2 2
MIRT489322 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT491791 ZNF24 zinc finger protein 24 2 2
MIRT491970 USP37 ubiquitin specific peptidase 37 2 2
MIRT492029 TWF1 twinfilin actin binding protein 1 2 4
MIRT492063 TMEM245 transmembrane protein 245 2 2
MIRT492247 SLC39A9 solute carrier family 39 member 9 2 2
MIRT492254 SLC35F5 solute carrier family 35 member F5 2 2
MIRT492592 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493436 KAT7 lysine acetyltransferase 7 2 2
MIRT493470 IPMK inositol polyphosphate multikinase 2 2
MIRT493639 HECTD1 HECT domain E3 ubiquitin protein ligase 1 2 2
MIRT493919 FAM127B retrotransposon Gag like 8A 2 4
MIRT494639 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT500032 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT504589 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2 4
MIRT505535 SP4 Sp4 transcription factor 2 6
MIRT507539 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 6
MIRT508846 TMCO1 transmembrane and coiled-coil domains 1 2 4
MIRT510488 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT511402 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT523252 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT525939 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT531453 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT533317 UNKL unkempt family like zinc finger 2 2
MIRT541034 STRBP spermatid perinuclear RNA binding protein 2 8
MIRT546734 RNF217 ring finger protein 217 2 2
MIRT555125 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT556105 MOAP1 modulator of apoptosis 1 2 2
MIRT560205 AK4 adenylate kinase 4 2 2
MIRT561087 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT566967 LBR lamin B receptor 2 2
MIRT567344 H3F3B H3 histone family member 3B 2 2
MIRT567863 DCAF12 DDB1 and CUL4 associated factor 12 2 2
MIRT574449 SCML2 Scm polycomb group protein like 2 2 2
MIRT575700 Map1b microtubule-associated protein 1B 2 2
MIRT651432 YIPF6 Yip1 domain family member 6 2 2
MIRT659728 CCDC93 coiled-coil domain containing 93 2 2
MIRT686937 SFT2D3 SFT2 domain containing 3 2 2
MIRT699385 SLC30A6 solute carrier family 30 member 6 2 2
MIRT710287 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT715123 PANK3 pantothenate kinase 3 2 2
MIRT721847 VLDLR very low density lipoprotein receptor 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4280 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4280 Platinum 23939 resistant tissue
hsa-miR-4280 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4280 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4280 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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