pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RBM8A   
Synonyms BOV-1A, BOV-1B, BOV-1C, C1DELq21.1, DEL1q21.1, MDS014, RBM8, RBM8B, TAR, Y14, ZNRP, ZRNP1
Description RNA binding motif protein 8A
Transcript NM_005105   
Expression
Putative miRNA Targets on RBM8A
3'UTR of RBM8A
(miRNA target sites are highlighted)
>RBM8A|NM_005105|3'UTR
   1 CAGGTCCTCTGTTGTCCAGGTGTTCTCTTCAAGATTCCATTTGACCATGCAGCCTTGGACAAATAGGACTGGGGTGGAAC
  81 TTGCTGTGTTTATATTTAATCTCTTACCGTATATGCGTAGTATTTGAGTTGCGAATAAATGTTCCATTTTTGTTTTCTAC
 161 ATTTAATGTTACTTTCCTGTCCTAAAATTGAAAGTTCTAAAGCATAGCAAGGCTGTATGGATCATTGTGAAGATACTTCT
 241 AGGGACTGAACTCTATGTATTTCTTTTTTTTCTTTTTTTTGAGATAGAGTCTTGCTGTGTTACCCAGGGTGGATTGCAGC
 321 TGATCATAGCTCACTGCAGCTTCAAACTCTTGGGCTCAAGCCATCCTTCTGCCTCACTGTCCCTAGTAGTTGGGATTACA
 401 GGCACATGCCACCATGCCCAGCTAAATTTTTAATATTTTTGTAGAGATGGGGTCTTGCTGTGTTACCTGGGCTAGTTATG
 481 TGAGTTTCTATATTAGACATAGTCTCAAGTTTCAGGTAGGGTTTAAAGTAGAGACACTGGTCAGTATTTCTTTTTTGGGG
 561 GGAACTAGGAGAGCAGGAGTAGAAGTGAGATGTTAAGATCTTATGGCACTAAAGACTTACTATTCTGTTCCTACATACTC
 641 TGTTAGGATCAGATAGATGTTATAGAAATGCCTTTTGTTTCTCCTGCCCTTCTTGATGTCACAGTTTTTTGTACTTCCAG
 721 CTGTCTAAAGGCATGAATCTCCTCTTGGAGCATTCTCCCAGACCCTTCTTTAGAAGAGTCTATACTAAGTTCTTGGTGCC
 801 CTCTTCGGCAGCCAAGGGTGAAGGCCCCATAGAGGAGAGGATCCAAAGGAGCATTGAGGAGGCCCAAGAGGAAAAGGATG
 881 TGGCTCAGGCTGGGAGGGACTTCAGTTAGCATGGTGGGGGAGAACCAGTACCACATACCCAGTAGGTAATAAGGTGTCCA
 961 GCAGAGGATGAAGGTCAGCAAGATAAGCAGGGCCAGTCTCAGGGCCCGGAGACGAACACGGGGACAATTGTCAAAGGAGC
1041 GGGGGAGGGCAAATTCACCAGCAGGGGCTAGGAATTTAGAAAATATACTGTAATTCAGACACTCAGCTTCTGATCTGAGT
1121 ATAGGGTGAATTGATGGAGGGGCATAGCTAGTGAGACAGAGCTCGCCTCCTACAAGGAGGAGAATGTTGCAAACCGTTTT
1201 CCCCTTCCCAACCTGGGACTATATGATTTCTTACCCCCAGGGATTATGATAGAAATATGAAGCCACCAAGTCTAGACTTG
1281 ATGGTGTTCAAGAATAAATAATACTGATTGCCTCCCTAGTCCTTGTCCAGCTAACTCAGCTGTTTATAATTGAAGGGATT
1361 CAACAAAATTATCTCTAGCATCAGGTGCTAGACATGGTTAGAATCTCACCATGGTTTAGTGACTGGTAGATAGCTATTAG
1441 GTAGGTAGATAAATAAATGATGCTAGAGGCAACAGGTCTAGGGTTAAGGATTAAGGCCTGGGAATTGGAGTCTCACCATG
1521 GCTCCCCTTCCTTGTCTGGGGCCTGGACACACTGAGGACAATGCGGCTATAGCAGATGGCCATGGCAGTCAGTGGCAGCA
1601 GAAAGAGGCAGCAGAAGGTGAAGAGGTTATAGGTGGTCTCTTGCCATTGAGCCTTGAAGCTGCCTTTGGTGACACACTGA
1681 GTGAAAGGGACTGGGCCAGCTCAGTGGACCGTGTGGAACAGGAACAGCTGGAGTGGAGTTGAGGACTATTAGAACTGGTT
1761 CCCCTCACCACCCAACCTACCCACCTATGTCATACTGTCTCCTCCCAATTCATCCTTAATTCCAAGTGAAGCAGCACAGT
1841 GCTGAGAAACAGTTCATCCATGGTGCCATGTTAAAGAAGTTGGAAATATATCTTGAAAATCCTATCTTCCTTTTAGGCTT
1921 GAATATGATGCTGAACAGTAAGTTTGTTAAATCTTGGAACTTAAAACAATCCTGCTTTCTCAAGTACTATTCTAACATTG
2001 CGCTTTATAAGGGATGATATTTCTACCACCTCACTCATATTTTTAGCTGAAATGATTTTCCTGGTATGTCTGTTATTTTG
2081 TGGAAAAAGAAATATTGTGTAAAATGGGTGCTGCCAAAATTCCAGGCCATTTTGCAGGGACTCTGAAGTGACCTTTAGTA
2161 GTAATAGTCTTATGTGCAGTAACTATAATGGTAAAGAATGTTAAATAATAAAATTTAACATTTTCCAAATGCTATTGGGC
2241 TGCCCCTCCCCCTTTTTGTTAAATTGCTGGGTTTTCCAACTGAATCAGTAAAAACTATTTCTGTTTAGAGCTACAAGGTT
2321 AAAGTGCCTGCTTTCCAGTAATGGAGATTGAGTCACTATTAATTTGATAAAAGGTAAGCTCAGTAGGCATCAGATTCCTA
2401 GATACAAGGCATTTGGGAAAGTGATTTTAGCAGACATGAGGGACATTTAGGAAAGATGAATAGTTTCAGCCTAAGAGAAT
2481 TTTGTGAACTGTTTGGAGTTACGATCAGGCTACTCTGAGCTAGTTGGGAAATGGTCTTTCCTCTTCCCATCTCTTGCATT
2561 CATATATTTCTAAGTTTTTTTTTTTGTTTTTGTTTTTGTGCTCTGCCTAAGAAGTGCTTGAGAATTGTGAGGAGTATAAA
2641 AATAGTCAAAGCTGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAG
2721 GTTAGGAGATGGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTGTACTAAAGATACAAAAAACTAGCCGGGCGTGGT
2801 GGTAGGTGCCTGTAGTCCCAGCTACTTGGGAACTCGGGAGGCTGAGGCAGGAGAATGACCTGAACCCAGGAGGCGGAGCT
2881 TGCAGTGAGCAGAGATTGCGCCATTGCACTCCAGCCTGGGCGACAGAGTAAGACTGTCTCCAAAAAAAAAAAAAATAATA
2961 ATCAAAGCTCTTGGATTTATAGTTTGGTCCACAGCCTTGTTTTGATCTTTCCTTTATCCTGTTTTATTGCCATTTACCAC
3041 GTACTGTAGAAACATCCCTTTCAACTGCTGATAACTTGGAAACAAGCCTACAAAAATAAGTAATTTCTAACTACTCCTAA
3121 TACTACCTATAACTACCCCTAAGCCCTTACCACTCTAACGTGACATTATTAAATTTTTTATTTTATTAACACTAATATTT
3201 TAACTACAATTACAGCATATGGGCAATACAGAATTTACCTAAAAGGATACTAATTTGGAACAAAAAAAATCACCTTTCGC
3281 ACATGTATCATGTCACAACCAGTTTGCCATTGAAACAAATAGAGGTTGCAAATATTGTCAGATTGTCAGGCTGTAAGAAA
3361 GGATGAAATTCATTTCCCATTGCATCATCTTGTGGCCCATGGATTTCAAGTGCCTTAGCCAAAATCATATAGCTAGTTAG
3441 CAGTAGAGCCGAGACTCAGAAAAAAACAAAGTAAAACAGGCAGACTGAAACAAAAAGTCTTCTAATTCCCAGTCCACATG
3521 TAAAATTTGCTTCATATAAACAAACCTAATTGTAAATGGCACTGTAGCAACAGGCTTCTTTTTAACACTTGGATTGGTAA
3601 AGGTCTTGTTTGCAACATATTAGAAGTATTATTTTTCTCTTTCCCCCCCACCCCACCCCCAACAGAGTCTGGCTCTGCCG
3681 CCCACGCCGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAGCCTCCACTTCCCAGGTTCAAGCAATTCTCGTGCCTCAGC
3761 CTCCTGAGTAGTTGGGATTACAGGTGCTCACCACTATACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGTC
3841 ATGTTGGCCAGGTTGGTCTTAAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCTTCCAAAATGCTGGGATTACAGGC
3921 TTGAGCCACCAGGCCTTTCTTTGTTCTTAGGAGTATAGTCAGACTAACTTCTAGTAGTTATATTTCTAATAATTGAGGAT
4001 GTAAGTAAGGATCAAATCTTAAATCAGTATAATGCATTGTCATTCCAGAGATAAATCCTAGACCCTTCTTGGCCTCCTTC
4081 TGACATAATTCTAATCCTACAGTCTCAGAGATGCTGTTGTATCCTGCCCCCCAACCCCATGATAGTGATAGTGGTTTTTG
4161 CCTTGAAGGAATTGCTTTGTATTTAGCTTTTCCCCCTCTAGATTTCTAGTTCCTTTTCAGTATTGGATTGGATTTGAGAT
4241 TTGATTAACCTAGTACTCAGGTTCAGATGCTCGCCTCTTTGCAATTTTAACACTCATTCGACAATAAAGTCAGTAAAAAA
4321 CACAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            ||||||||  ||:||||| 
Target 5' acTGCAGCCTCCACTTCCCAg 3'
3715 - 3735 163.00 -33.00
2
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || |||||:|||:||| 
Target 5' caccCA-CCTTGGCCTTCCAa 3'
3883 - 3902 152.00 -22.00
3
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | |:||   ||||||| 
Target 5' caTACTGTCT---CCTCCCAa 3'
1791 - 1808 148.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
95245 6 ClinVar
1199622 108 ClinVar
212026 2586 ClinVar
COSN30154647 9 COSMIC
COSN30180409 30 COSMIC
COSN31604181 37 COSMIC
COSN17037397 68 COSMIC
COSN30531035 98 COSMIC
COSN22361554 101 COSMIC
COSN26991809 117 COSMIC
COSN30145408 121 COSMIC
COSN22709438 176 COSMIC
COSN30132957 194 COSMIC
COSN22584365 332 COSMIC
COSN21207771 337 COSMIC
COSN21208480 506 COSMIC
COSM3930355 653 COSMIC
COSM8835175 706 COSMIC
COSM5426539 852 COSMIC
COSN31550885 1086 COSMIC
COSN31485110 1117 COSMIC
COSN1404866 1136 COSMIC
COSN30165335 1361 COSMIC
COSN30176239 1459 COSMIC
COSN28694316 1488 COSMIC
COSN28695405 1496 COSMIC
COSM6284756 1643 COSMIC
COSN1404867 1747 COSMIC
COSN1404868 1760 COSMIC
COSN30533372 1764 COSMIC
COSN31625020 2585 COSMIC
COSN29637615 2588 COSMIC
COSN17182792 2796 COSMIC
COSN23654350 2953 COSMIC
COSN29093976 3194 COSMIC
COSN14563531 3272 COSMIC
COSN17906982 3282 COSMIC
COSN21929975 3446 COSMIC
COSN6001771 3470 COSMIC
COSN30005077 3703 COSMIC
COSN21789965 4059 COSMIC
COSN30163715 4106 COSMIC
COSN1404869 4189 COSMIC
COSN26431934 4191 COSMIC
COSN15660404 4282 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs12079762 6 dbSNP
rs782759774 7 dbSNP
rs1482213505 11 dbSNP
rs781996055 12 dbSNP
rs374779697 14 dbSNP
rs1256964850 17 dbSNP
rs1425690096 18 dbSNP
rs1185500836 21 dbSNP
rs781788615 21 dbSNP
rs782815324 22 dbSNP
rs201860373 25 dbSNP
rs1430928308 31 dbSNP
rs1170898190 37 dbSNP
rs372431424 38 dbSNP
rs782553025 45 dbSNP
rs201038934 46 dbSNP
rs1297311825 48 dbSNP
rs1402465440 63 dbSNP
rs142839636 67 dbSNP
rs1381976265 73 dbSNP
rs1229008381 80 dbSNP
rs1305490985 86 dbSNP
rs1203537466 96 dbSNP
rs1256875903 97 dbSNP
rs1048870 101 dbSNP
rs1198849923 103 dbSNP
rs1242557582 107 dbSNP
rs13275 108 dbSNP
rs113989026 109 dbSNP
rs1428363236 112 dbSNP
rs1177209366 116 dbSNP
rs1377896056 132 dbSNP
rs1467220147 142 dbSNP
rs1334161063 145 dbSNP
rs1404629956 152 dbSNP
rs1435739888 153 dbSNP
rs1322531938 155 dbSNP
rs1359771751 161 dbSNP
rs1213816069 167 dbSNP
rs1301692637 170 dbSNP
rs1314185325 173 dbSNP
rs1221869668 184 dbSNP
rs1262608075 190 dbSNP
rs55897390 192 dbSNP
rs1210667398 197 dbSNP
rs1240907654 208 dbSNP
rs1485816827 213 dbSNP
rs1192166044 217 dbSNP
rs1427653683 218 dbSNP
rs1173738950 219 dbSNP
rs1428146800 219 dbSNP
rs1457369489 221 dbSNP
rs1160694168 222 dbSNP
rs1343411264 224 dbSNP
rs1429879343 227 dbSNP
rs1293924687 236 dbSNP
rs587770708 239 dbSNP
rs1402859608 244 dbSNP
rs1282956428 246 dbSNP
rs1230367559 253 dbSNP
rs1282189507 255 dbSNP
rs376280551 255 dbSNP
rs1316878491 256 dbSNP
rs1222871813 259 dbSNP
rs1248831175 264 dbSNP
rs1489977934 272 dbSNP
rs1199137313 278 dbSNP
rs1267780992 281 dbSNP
rs1472700894 282 dbSNP
rs1183744598 285 dbSNP
rs587668620 287 dbSNP
rs1405110558 290 dbSNP
rs1400043455 293 dbSNP
rs1165469493 296 dbSNP
rs1351545002 309 dbSNP
rs1422559781 322 dbSNP
rs1302282302 323 dbSNP
rs1351365368 332 dbSNP
rs1411860295 333 dbSNP
rs1277861532 335 dbSNP
rs587727479 339 dbSNP
rs1372629635 343 dbSNP
rs1228946576 346 dbSNP
rs1292721433 347 dbSNP
rs1357878704 369 dbSNP
rs1222272395 371 dbSNP
rs1483196257 375 dbSNP
rs375871391 381 dbSNP
rs1230691082 383 dbSNP
rs1469242667 410 dbSNP
rs587623293 418 dbSNP
rs139217740 420 dbSNP
rs1387066340 428 dbSNP
rs1442652752 433 dbSNP
rs1162734111 436 dbSNP
rs1370869294 441 dbSNP
rs587712030 449 dbSNP
rs1327167813 450 dbSNP
rs879946564 451 dbSNP
rs1448895772 452 dbSNP
rs1286003107 453 dbSNP
rs1381253241 454 dbSNP
rs1245831122 458 dbSNP
rs1298801724 460 dbSNP
rs1344685424 466 dbSNP
rs1194435507 472 dbSNP
rs1270497889 472 dbSNP
rs1436841028 477 dbSNP
rs1210235015 479 dbSNP
rs1244405805 485 dbSNP
rs1459932523 490 dbSNP
rs1182853876 492 dbSNP
rs1390701953 498 dbSNP
rs587598861 499 dbSNP
rs1165905690 509 dbSNP
rs1419132424 522 dbSNP
rs587667686 531 dbSNP
rs1338816466 537 dbSNP
rs1403915351 542 dbSNP
rs1452562220 543 dbSNP
rs1321872111 563 dbSNP
rs1367937151 564 dbSNP
rs1225761758 573 dbSNP
rs1269926657 574 dbSNP
rs1219384412 577 dbSNP
rs1338384709 577 dbSNP
rs1264477212 600 dbSNP
rs1459638283 602 dbSNP
rs1202476102 604 dbSNP
rs1248608048 613 dbSNP
rs1448633910 618 dbSNP
rs1190782230 620 dbSNP
rs1241263412 622 dbSNP
rs1478481846 623 dbSNP
rs1178780045 625 dbSNP
rs1427445226 630 dbSNP
rs1469391274 632 dbSNP
rs782462170 632 dbSNP
rs1159973049 633 dbSNP
rs1387806171 635 dbSNP
rs1380986005 652 dbSNP
rs1318083151 663 dbSNP
rs1331985171 668 dbSNP
rs1439040399 671 dbSNP
rs1284882302 674 dbSNP
rs1320928292 683 dbSNP
rs1222418312 689 dbSNP
rs1268150849 702 dbSNP
rs587745061 717 dbSNP
rs1203239936 719 dbSNP
rs1283307862 730 dbSNP
rs1452023939 733 dbSNP
rs1201310732 734 dbSNP
rs1480204390 753 dbSNP
rs1183027990 768 dbSNP
rs1365542275 772 dbSNP
rs1452282657 773 dbSNP
rs1158560485 788 dbSNP
rs1392082837 789 dbSNP
rs1426987580 792 dbSNP
rs1301650024 794 dbSNP
rs1343278517 799 dbSNP
rs1403906078 801 dbSNP
rs1307089953 806 dbSNP
rs1336955744 811 dbSNP
rs1236237799 828 dbSNP
rs1260141896 839 dbSNP
rs3768298 852 dbSNP
rs1224474211 854 dbSNP
rs1289274815 856 dbSNP
rs1490249610 861 dbSNP
rs1206071978 874 dbSNP
rs1252915575 888 dbSNP
rs1417481389 916 dbSNP
rs1181139199 919 dbSNP
rs1369594974 940 dbSNP
rs1446916333 956 dbSNP
rs1162093415 962 dbSNP
rs1365264450 969 dbSNP
rs587600037 973 dbSNP
rs1423618748 982 dbSNP
rs1298447196 1007 dbSNP
rs1389217202 1008 dbSNP
rs1398180476 1008 dbSNP
rs1305612943 1013 dbSNP
rs1383481506 1014 dbSNP
rs1247999142 1019 dbSNP
rs1312664261 1020 dbSNP
rs1358540896 1025 dbSNP
rs1228868005 1026 dbSNP
rs1479765803 1036 dbSNP
rs1195320701 1040 dbSNP
rs1256902525 1044 dbSNP
rs1463050679 1045 dbSNP
rs1182220361 1046 dbSNP
rs1450554138 1051 dbSNP
rs1172946434 1065 dbSNP
rs1374459290 1067 dbSNP
rs1460115927 1069 dbSNP
rs587677751 1086 dbSNP
rs369921325 1087 dbSNP
rs1454109150 1088 dbSNP
rs1334695068 1089 dbSNP
rs782228901 1096 dbSNP
rs1381913916 1104 dbSNP
rs782432933 1106 dbSNP
rs868939744 1108 dbSNP
rs1382624370 1111 dbSNP
rs1297387948 1115 dbSNP
rs1306010372 1117 dbSNP
rs1226885242 1121 dbSNP
rs1263843714 1124 dbSNP
rs1325823849 1126 dbSNP
rs1201845616 1128 dbSNP
rs1243111977 1135 dbSNP
rs1465726003 1141 dbSNP
rs1188692755 1143 dbSNP
rs71664094 1148 dbSNP
rs144112786 1149 dbSNP
rs1426386243 1157 dbSNP
rs1169380793 1162 dbSNP
rs782690301 1162 dbSNP
rs1470694589 1164 dbSNP
rs1058534 1165 dbSNP
rs1405284797 1166 dbSNP
rs1431332075 1169 dbSNP
rs1290414128 1172 dbSNP
rs1359532501 1177 dbSNP
rs1381425597 1182 dbSNP
rs1284241303 1183 dbSNP
rs1347585476 1186 dbSNP
rs1221815510 1191 dbSNP
rs1262543201 1192 dbSNP
rs1318053653 1195 dbSNP
rs1218490542 1196 dbSNP
rs1259476364 1202 dbSNP
rs1485785783 1208 dbSNP
rs1200566021 1211 dbSNP
rs1269219850 1221 dbSNP
rs1481187899 1227 dbSNP
rs1196685317 1237 dbSNP
rs1427904795 1239 dbSNP
rs1401228494 1258 dbSNP
rs1161272498 1262 dbSNP
rs1343358865 1269 dbSNP
rs1452838291 1271 dbSNP
rs1303509156 1281 dbSNP
rs1367708904 1282 dbSNP
rs1403263950 1286 dbSNP
rs1282741342 1295 dbSNP
rs1374221101 1304 dbSNP
rs71664095 1306 dbSNP
rs1225537971 1308 dbSNP
rs1305547781 1311 dbSNP
rs1316824356 1315 dbSNP
rs1223721472 1318 dbSNP
rs1294347300 1321 dbSNP
rs1490738669 1322 dbSNP
rs1219722488 1327 dbSNP
rs1245753463 1337 dbSNP
rs1470257659 1340 dbSNP
rs1178398111 1343 dbSNP
rs1405761698 1345 dbSNP
rs1418380316 1354 dbSNP
rs1163986526 1362 dbSNP
rs1367144277 1366 dbSNP
rs1422501997 1378 dbSNP
rs1302848773 1394 dbSNP
rs1355307569 1407 dbSNP
rs1444521251 1419 dbSNP
rs1296478744 1420 dbSNP
rs1373296658 1432 dbSNP
rs1247261490 1434 dbSNP
rs1317623505 1436 dbSNP
rs1357810870 1441 dbSNP
rs1245692741 1446 dbSNP
rs1288749224 1449 dbSNP
rs1438024048 1452 dbSNP
rs1206037848 1459 dbSNP
rs587641715 1459 dbSNP
rs1230636492 1462 dbSNP
rs587744334 1469 dbSNP
rs1457273094 1472 dbSNP
rs587623854 1490 dbSNP
rs1184198143 1496 dbSNP
rs1387011082 1503 dbSNP
rs782271744 1514 dbSNP
rs1162413114 1518 dbSNP
rs1420525326 1522 dbSNP
rs1411831006 1523 dbSNP
rs782431884 1524 dbSNP
rs1353948203 1531 dbSNP
rs1453452186 1535 dbSNP
rs1339347258 1542 dbSNP
rs1381184991 1547 dbSNP
rs757436429 1551 dbSNP
rs376065276 1552 dbSNP
rs1339696087 1553 dbSNP
rs782258237 1553 dbSNP
rs1215904797 1555 dbSNP
rs587687490 1561 dbSNP
rs143120445 1564 dbSNP
rs1244949066 1565 dbSNP
rs1459889536 1570 dbSNP
rs781957502 1578 dbSNP
rs1242421862 1588 dbSNP
rs782043235 1592 dbSNP
rs782592170 1594 dbSNP
rs1476518698 1595 dbSNP
rs587670836 1601 dbSNP
rs1166428455 1604 dbSNP
rs1423173500 1619 dbSNP
rs1178647609 1623 dbSNP
rs587703172 1626 dbSNP
rs1404563038 1633 dbSNP
rs879961227 1647 dbSNP
rs1319395656 1651 dbSNP
rs1328620682 1663 dbSNP
rs1429057855 1674 dbSNP
rs1268091169 1681 dbSNP
rs199817292 1689 dbSNP
rs187831250 1693 dbSNP
rs587720783 1700 dbSNP
rs1199754067 1701 dbSNP
rs1284848472 1703 dbSNP
rs781824967 1708 dbSNP
rs1448584279 1710 dbSNP
rs71664096 1710 dbSNP
rs587642387 1711 dbSNP
rs587722472 1725 dbSNP
rs1201725531 1729 dbSNP
rs782699392 1736 dbSNP
rs781808422 1738 dbSNP
rs782225050 1740 dbSNP
rs782544348 1740 dbSNP
rs1477732141 1743 dbSNP
rs781834551 1748 dbSNP
rs1159719565 1751 dbSNP
rs587603249 1752 dbSNP
rs1399367660 1768 dbSNP
rs1297917400 1769 dbSNP
rs781850676 1772 dbSNP
rs782516553 1775 dbSNP
rs1359530095 1779 dbSNP
rs750487684 1780 dbSNP
rs71664097 1782 dbSNP
rs587721754 1784 dbSNP
rs1284653810 1787 dbSNP
rs587679650 1788 dbSNP
rs1343167679 1791 dbSNP
rs71664098 1797 dbSNP
rs1231889887 1812 dbSNP
rs1280109067 1817 dbSNP
rs1352728916 1822 dbSNP
rs1203189427 1823 dbSNP
rs71664099 1828 dbSNP
rs1284996519 1843 dbSNP
rs1490576477 1861 dbSNP
rs1224933720 1869 dbSNP
rs373864285 1889 dbSNP
rs1432714171 1894 dbSNP
rs1182588647 1903 dbSNP
rs1366079377 1904 dbSNP
rs1469016088 1923 dbSNP
rs190627094 1927 dbSNP
rs587661756 1935 dbSNP
rs1386187821 1937 dbSNP
rs1426927308 1956 dbSNP
rs1304656391 1968 dbSNP
rs1388097772 1970 dbSNP
rs1385783437 1971 dbSNP
rs1328892178 1979 dbSNP
rs1237784959 1981 dbSNP
rs1308276473 1987 dbSNP
rs1247857282 1989 dbSNP
rs1289927362 1996 dbSNP
rs1488250112 1997 dbSNP
rs71664100 2001 dbSNP
rs1178624217 2002 dbSNP
rs1244293924 2007 dbSNP
rs1446868068 2020 dbSNP
rs201357976 2021 dbSNP
rs1162036007 2025 dbSNP
rs1366378881 2025 dbSNP
rs1457063575 2038 dbSNP
rs1167999225 2041 dbSNP
rs1397940509 2050 dbSNP
rs1443919324 2059 dbSNP
rs1330638412 2067 dbSNP
rs1383411536 2069 dbSNP
rs1454396733 2070 dbSNP
rs1310261619 2076 dbSNP
rs1321351306 2081 dbSNP
rs1228350940 2104 dbSNP
rs1253277168 2105 dbSNP
rs1337604236 2112 dbSNP
rs71664101 2138 dbSNP
rs782753168 2139 dbSNP
rs182869605 2146 dbSNP
rs1463010809 2152 dbSNP
rs1182167291 2163 dbSNP
rs1255830905 2173 dbSNP
rs1422894365 2175 dbSNP
rs1193525474 2191 dbSNP
rs1374403909 2196 dbSNP
rs1463650468 2199 dbSNP
rs1169281189 2202 dbSNP
rs587672293 2208 dbSNP
rs374153506 2216 dbSNP
rs1406771400 2227 dbSNP
rs187878564 2234 dbSNP
rs140286602 2238 dbSNP
rs1382564571 2244 dbSNP
rs587705038 2251 dbSNP
rs1218119952 2253 dbSNP
rs1033819580 2254 dbSNP
rs587774799 2258 dbSNP
rs1263791200 2270 dbSNP
rs1326288662 2271 dbSNP
rs1208570510 2276 dbSNP
rs587617710 2279 dbSNP
rs1486436575 2284 dbSNP
rs1207239687 2285 dbSNP
rs587682944 2290 dbSNP
rs1263435769 2292 dbSNP
rs1476612680 2297 dbSNP
rs1192302292 2306 dbSNP
rs1429307159 2308 dbSNP
rs1481122904 2313 dbSNP
rs898787374 2317 dbSNP
rs117371762 2324 dbSNP
rs1454168127 2325 dbSNP
rs34991188 2326 dbSNP
rs782516067 2331 dbSNP
rs939696718 2340 dbSNP
rs1399564707 2343 dbSNP
rs1284019185 2346 dbSNP
rs1347530954 2348 dbSNP
rs1217543896 2355 dbSNP
rs1301245466 2358 dbSNP
rs890765383 2358 dbSNP
rs1241662262 2372 dbSNP
rs1051304483 2381 dbSNP
rs1487110491 2383 dbSNP
rs932377610 2385 dbSNP
rs1269145250 2396 dbSNP
rs921103877 2399 dbSNP
rs144442231 2402 dbSNP
rs935819990 2405 dbSNP
rs1419562905 2406 dbSNP
rs924561713 2425 dbSNP
rs1161030989 2429 dbSNP
rs587722765 2451 dbSNP
rs1378189498 2452 dbSNP
rs1418854422 2457 dbSNP
rs1304052200 2462 dbSNP
rs1367649447 2470 dbSNP
rs1434428450 2472 dbSNP
rs1292973003 2479 dbSNP
rs1374695472 2490 dbSNP
rs977282367 2494 dbSNP
rs1307687736 2496 dbSNP
rs1353519487 2502 dbSNP
rs966702890 2503 dbSNP
rs587760030 2508 dbSNP
rs1292109136 2510 dbSNP
rs587657105 2522 dbSNP
rs782577303 2527 dbSNP
rs1024937170 2540 dbSNP
rs1218786928 2542 dbSNP
rs587714458 2553 dbSNP
rs1245558745 2557 dbSNP
rs1480927885 2558 dbSNP
rs1180495691 2567 dbSNP
rs1236282724 2574 dbSNP
rs1438898557 2576 dbSNP
rs587608332 2579 dbSNP
rs1034178302 2580 dbSNP
rs782140677 2580 dbSNP
rs587658639 2583 dbSNP
rs72701871 2585 dbSNP
rs1164188196 2586 dbSNP
rs1355244503 2586 dbSNP
rs1403748080 2586 dbSNP
rs782677162 2586 dbSNP
rs1405076109 2587 dbSNP
rs199958689 2587 dbSNP
rs60403829 2587 dbSNP
rs1491049799 2588 dbSNP
rs201225488 2588 dbSNP
rs66462664 2588 dbSNP
rs1015867554 2589 dbSNP
rs1380899544 2590 dbSNP
rs1226205274 2592 dbSNP
rs1288686379 2592 dbSNP
rs1307643197 2592 dbSNP
rs202122090 2592 dbSNP
rs1256135086 2593 dbSNP
rs1457232910 2596 dbSNP
rs797040141 2597 dbSNP
rs1183975049 2598 dbSNP
rs1238927575 2605 dbSNP
rs1181561565 2609 dbSNP
rs1420453279 2613 dbSNP
rs1467288879 2617 dbSNP
rs1168558747 2622 dbSNP
rs1400258331 2628 dbSNP
rs890795283 2631 dbSNP
rs1470553710 2636 dbSNP
rs1339124207 2640 dbSNP
rs782803271 2641 dbSNP
rs77111400 2643 dbSNP
rs587692795 2647 dbSNP
rs1283279806 2651 dbSNP
rs1050748460 2657 dbSNP
rs932298912 2660 dbSNP
rs1362197927 2662 dbSNP
rs1219966360 2663 dbSNP
rs587750181 2664 dbSNP
rs1317233902 2665 dbSNP
rs1204289080 2669 dbSNP
rs1280640688 2673 dbSNP
rs587647936 2674 dbSNP
rs1209132154 2677 dbSNP
rs1242934788 2685 dbSNP
rs587682752 2687 dbSNP
rs935852511 2689 dbSNP
rs924425944 2691 dbSNP
rs1191608186 2700 dbSNP
rs1422939669 2701 dbSNP
rs1480798920 2705 dbSNP
rs749795633 2706 dbSNP
rs587743239 2707 dbSNP
rs1414308756 2708 dbSNP
rs1319338063 2710 dbSNP
rs1345422967 2711 dbSNP
rs1401400033 2715 dbSNP
rs917147364 2717 dbSNP
rs191843738 2718 dbSNP
rs1223556477 2720 dbSNP
rs959616447 2721 dbSNP
rs1342720088 2723 dbSNP
rs1218457203 2731 dbSNP
rs587686411 2738 dbSNP
rs1489402819 2740 dbSNP
rs1214802018 2741 dbSNP
rs1262740911 2742 dbSNP
rs1490545955 2743 dbSNP
rs782632625 2744 dbSNP
rs1201063172 2745 dbSNP
rs1376457441 2753 dbSNP
rs3199206 2758 dbSNP
rs782711553 2761 dbSNP
rs868938247 2767 dbSNP
rs1159521398 2769 dbSNP
rs1382613436 2775 dbSNP
rs587762838 2775 dbSNP
rs184483533 2780 dbSNP
rs781816585 2780 dbSNP
rs1386863312 2781 dbSNP
rs3199208 2788 dbSNP
rs1329280396 2789 dbSNP
rs1435605166 2790 dbSNP
rs187603182 2791 dbSNP
rs1355676118 2792 dbSNP
rs1237652564 2795 dbSNP
rs587761815 2796 dbSNP
rs782213124 2804 dbSNP
rs782365218 2807 dbSNP
rs1265284407 2817 dbSNP
rs1451094682 2820 dbSNP
rs955681726 2833 dbSNP
rs1240537632 2835 dbSNP
rs587659073 2836 dbSNP
rs782567667 2838 dbSNP
rs1458033605 2839 dbSNP
rs1164511715 2840 dbSNP
rs1388025550 2847 dbSNP
rs192500658 2850 dbSNP
rs1332008927 2858 dbSNP
rs1378996164 2866 dbSNP
rs1444335459 2868 dbSNP
rs1308211503 2874 dbSNP
rs1341302391 2875 dbSNP
rs1247327734 2899 dbSNP
rs1263897121 2900 dbSNP
rs1355780420 2908 dbSNP
rs1054231635 2909 dbSNP
rs1456792306 2911 dbSNP
rs999866213 2914 dbSNP
rs868935850 2921 dbSNP
rs1189275822 2922 dbSNP
rs782685923 2929 dbSNP
rs199854764 2935 dbSNP
rs1366323117 2936 dbSNP
rs1457014926 2938 dbSNP
rs868992061 2938 dbSNP
rs1170715656 2941 dbSNP
rs34729420 2942 dbSNP
rs1330576485 2943 dbSNP
rs1402413811 2943 dbSNP
rs1402728452 2949 dbSNP
rs141029936 2950 dbSNP
rs1310907429 2952 dbSNP
rs1340041289 2953 dbSNP
rs80094349 2953 dbSNP
rs587652393 2954 dbSNP
rs1491358178 2955 dbSNP
rs1198639709 2956 dbSNP
rs147004767 2956 dbSNP
rs1484468740 2956 dbSNP
rs1491273210 2956 dbSNP
rs903032411 2956 dbSNP
rs1425079464 2959 dbSNP
rs1476551829 2963 dbSNP
rs1169927414 2966 dbSNP
rs1378110702 2977 dbSNP
rs1467408352 2981 dbSNP
rs1300819974 2990 dbSNP
rs1401771280 2991 dbSNP
rs1400774662 2998 dbSNP
rs1300267619 3004 dbSNP
rs1338612968 3008 dbSNP
rs35460165 3011 dbSNP
rs1218063374 3012 dbSNP
rs1302651027 3012 dbSNP
rs1314405727 3019 dbSNP
rs1231569380 3021 dbSNP
rs1041567900 3029 dbSNP
rs1485149368 3031 dbSNP
rs1216971879 3032 dbSNP
rs1264838942 3038 dbSNP
rs949885410 3040 dbSNP
rs917198805 3041 dbSNP
rs1192241822 3046 dbSNP
rs1268004460 3046 dbSNP
rs1056103041 3051 dbSNP
rs1434763938 3058 dbSNP
rs1173706871 3064 dbSNP
rs1376913121 3066 dbSNP
rs938037954 3068 dbSNP
rs1420080071 3072 dbSNP
rs1160725084 3079 dbSNP
rs1358838736 3083 dbSNP
rs926592886 3091 dbSNP
rs1399505584 3098 dbSNP
rs974157685 3103 dbSNP
rs1294148897 3109 dbSNP
rs782202448 3116 dbSNP
rs76363180 3120 dbSNP
rs74959119 3121 dbSNP
rs1385539978 3122 dbSNP
rs1301173600 3126 dbSNP
rs962751701 3129 dbSNP
rs908619113 3137 dbSNP
rs1242738680 3138 dbSNP
rs982986830 3141 dbSNP
rs955716955 3150 dbSNP
rs1029929926 3155 dbSNP
rs1246721321 3159 dbSNP
rs997485687 3160 dbSNP
rs1189475231 3165 dbSNP
rs1266553080 3169 dbSNP
rs1440141540 3188 dbSNP
rs782112645 3188 dbSNP
rs1180227528 3192 dbSNP
rs1378734008 3199 dbSNP
rs1419258176 3206 dbSNP
rs1165589904 3207 dbSNP
rs1351749223 3208 dbSNP
rs1456427233 3210 dbSNP
rs1293508099 3213 dbSNP
rs1378235141 3214 dbSNP
rs963752438 3222 dbSNP
rs1307438237 3224 dbSNP
rs1032605792 3229 dbSNP
rs779392048 3233 dbSNP
rs1374211993 3242 dbSNP
rs1222905493 3254 dbSNP
rs999810743 3259 dbSNP
rs587717032 3261 dbSNP
rs902981466 3268 dbSNP
rs1218719179 3270 dbSNP
rs1272499185 3273 dbSNP
rs1458131179 3278 dbSNP
rs1200311088 3283 dbSNP
rs150275951 3290 dbSNP
rs1014116120 3300 dbSNP
rs1422157713 3304 dbSNP
rs1164122361 3310 dbSNP
rs782408922 3311 dbSNP
rs1329888984 3318 dbSNP
rs1400107275 3335 dbSNP
rs782037718 3341 dbSNP
rs1284478659 3344 dbSNP
rs1380830688 3350 dbSNP
rs1226153091 3351 dbSNP
rs1292061583 3357 dbSNP
rs782359361 3358 dbSNP
rs1200515490 3362 dbSNP
rs1256076583 3362 dbSNP
rs1437063814 3363 dbSNP
rs1210498020 3364 dbSNP
rs587672726 3374 dbSNP
rs782120463 3377 dbSNP
rs185710141 3383 dbSNP
rs905197753 3387 dbSNP
rs1424490511 3394 dbSNP
rs748486064 3397 dbSNP
rs1478839681 3414 dbSNP
rs190665108 3418 dbSNP
rs1419401739 3425 dbSNP
rs782357004 3430 dbSNP
rs1336517048 3438 dbSNP
rs1360548189 3451 dbSNP
rs1445283260 3457 dbSNP
rs1311883324 3462 dbSNP
rs587627379 3466 dbSNP
rs1219905225 3467 dbSNP
rs1276251555 3471 dbSNP
rs1338621635 3474 dbSNP
rs1219588474 3475 dbSNP
rs982836609 3476 dbSNP
rs1310200089 3477 dbSNP
rs1210515161 3478 dbSNP
rs934195748 3482 dbSNP
rs1264128274 3497 dbSNP
rs922725217 3497 dbSNP
rs1191539991 3499 dbSNP
rs112979084 3503 dbSNP
rs1478607096 3504 dbSNP
rs964679789 3518 dbSNP
rs1033222374 3540 dbSNP
rs1434484242 3545 dbSNP
rs1172672335 3562 dbSNP
rs587728190 3567 dbSNP
rs978421882 3568 dbSNP
rs1360711290 3572 dbSNP
rs138924552 3589 dbSNP
rs587659783 3603 dbSNP
rs376768749 3609 dbSNP
rs879976599 3613 dbSNP
rs1020003919 3616 dbSNP
rs1437174047 3617 dbSNP
rs1014397259 3619 dbSNP
rs1342659599 3625 dbSNP
rs371478482 3632 dbSNP
rs1233263081 3641 dbSNP
rs587622458 3642 dbSNP
rs1034562477 3643 dbSNP
rs1356075337 3643 dbSNP
rs1452243334 3644 dbSNP
rs1001365402 3649 dbSNP
rs1179605674 3650 dbSNP
rs1380531341 3650 dbSNP
rs1454148796 3650 dbSNP
rs1421075730 3653 dbSNP
rs879968889 3655 dbSNP
rs587703888 3656 dbSNP
rs1325498960 3661 dbSNP
rs1368638866 3661 dbSNP
rs1439937103 3668 dbSNP
rs1309631394 3672 dbSNP
rs1379412505 3673 dbSNP
rs899118905 3679 dbSNP
rs1279188575 3680 dbSNP
rs1211695740 3684 dbSNP
rs1288384124 3685 dbSNP
rs1468374797 3686 dbSNP
rs1199674456 3688 dbSNP
rs184562575 3689 dbSNP
rs941355861 3693 dbSNP
rs887084772 3700 dbSNP
rs1362838548 3701 dbSNP
rs1472852542 3722 dbSNP
rs781952170 3723 dbSNP
rs1392210336 3728 dbSNP
rs1460805485 3729 dbSNP
rs587624478 3731 dbSNP
rs1331941453 3732 dbSNP
rs188411357 3735 dbSNP
rs934037700 3741 dbSNP
rs1389434889 3750 dbSNP
rs1306624332 3751 dbSNP
rs922702196 3758 dbSNP
rs1341245698 3766 dbSNP
rs1247088212 3771 dbSNP
rs782093196 3772 dbSNP
rs1334232122 3777 dbSNP
rs942865661 3785 dbSNP
rs1456753369 3787 dbSNP
rs1195541120 3792 dbSNP
rs1249421800 3797 dbSNP
rs181306508 3801 dbSNP
rs587756806 3802 dbSNP
rs1474594597 3813 dbSNP
rs1171351820 3828 dbSNP
rs978953068 3831 dbSNP
rs967034667 3832 dbSNP
rs587638142 3837 dbSNP
rs1460298801 3838 dbSNP
rs1297326415 3840 dbSNP
rs782705107 3841 dbSNP
rs1403193616 3842 dbSNP
rs587689418 3864 dbSNP
rs1311281440 3868 dbSNP
rs148929877 3869 dbSNP
rs1400666645 3873 dbSNP
rs960091164 3877 dbSNP
rs1280673953 3878 dbSNP
rs1034098703 3886 dbSNP
rs587672773 3889 dbSNP
rs1256898913 3890 dbSNP
rs1347564029 3891 dbSNP
rs147035532 3891 dbSNP
rs1254926835 3893 dbSNP
rs1485089023 3901 dbSNP
rs1193699833 3930 dbSNP
rs15502 3939 dbSNP
rs1426603497 3941 dbSNP
rs15590 3943 dbSNP
rs1378055331 3946 dbSNP
rs1467357570 3947 dbSNP
rs1172060246 3948 dbSNP
rs1375022174 3948 dbSNP
rs1400721847 3949 dbSNP
rs782137343 3967 dbSNP
rs1016209859 3969 dbSNP
rs1360510816 3971 dbSNP
rs1382214761 3972 dbSNP
rs1302582014 3980 dbSNP
rs1333234714 3981 dbSNP
rs1232526707 3993 dbSNP
rs868910890 4001 dbSNP
rs1004765500 4015 dbSNP
rs1277778624 4016 dbSNP
rs1346658346 4025 dbSNP
rs1216719622 4029 dbSNP
rs1262033346 4033 dbSNP
rs887117207 4035 dbSNP
rs1185896931 4037 dbSNP
rs1267945954 4045 dbSNP
rs1047542466 4051 dbSNP
rs998194526 4055 dbSNP
rs1191469791 4063 dbSNP
rs901277097 4066 dbSNP
rs1394706334 4067 dbSNP
rs1039778895 4071 dbSNP
rs1420478813 4071 dbSNP
rs1160668987 4082 dbSNP
rs1343579104 4091 dbSNP
rs942885890 4097 dbSNP
rs926098852 4099 dbSNP
rs1393458406 4101 dbSNP
rs1043291194 4102 dbSNP
rs1303053376 4108 dbSNP
rs946267813 4115 dbSNP
rs913477911 4121 dbSNP
rs1378089428 4123 dbSNP
rs1240504733 4128 dbSNP
rs1308650566 4131 dbSNP
rs1314663248 4137 dbSNP
rs1214396133 4139 dbSNP
rs587615405 4154 dbSNP
rs1265992452 4169 dbSNP
rs1469709668 4172 dbSNP
rs1211601539 4174 dbSNP
rs1252210106 4191 dbSNP
rs587681154 4192 dbSNP
rs1440072788 4194 dbSNP
rs587674871 4196 dbSNP
rs1180792090 4197 dbSNP
rs185857658 4199 dbSNP
rs1165525010 4206 dbSNP
rs782805653 4208 dbSNP
rs1370710896 4226 dbSNP
rs1460388222 4228 dbSNP
rs1325816854 4235 dbSNP
rs1401528415 4238 dbSNP
rs1449432622 4246 dbSNP
rs1299548281 4250 dbSNP
rs927062666 4266 dbSNP
rs77198650 4272 dbSNP
rs1312736835 4273 dbSNP
rs1336289856 4282 dbSNP
rs782486129 4284 dbSNP
rs1016072388 4285 dbSNP
rs1272439560 4295 dbSNP
rs587605593 4299 dbSNP
rs587666967 4300 dbSNP
rs950651147 4303 dbSNP
rs1231429144 4304 dbSNP
rs1480393483 4309 dbSNP
rs1182537508 4313 dbSNP
rs1420191887 4323 dbSNP
rs587742553 4323 dbSNP
rs587604918 4325 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | |:||   ||||||| 
Target 5' -aUACUGUCU---CCUCCCA- 3'
1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 9939.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | |:||   ||||||| 
Target 5' caUACUGUCU---CCUCCCAa 3'
3 - 20
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9939.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 5 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177617. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_3_7 PAR-CLIP data was present in ERX177630. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_4_8 PAR-CLIP data was present in ERX177599. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_1 PAR-CLIP data was present in ERX177603. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_5 PAR-CLIP data was present in ERX177606. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_2_8 PAR-CLIP data was present in ERX177608. RNA binding protein: AGO2. Condition:p53_V_AGO_CLIP_2_10 PAR-CLIP data was present in ERX177610. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_2_12 PAR-CLIP data was present in ERX177611. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_1 PAR-CLIP data was present in ERX177615. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_5 PAR-CLIP data was present in ERX177620. RNA binding protein: AGO2. Condition:p53_V_AGO_CLIP_3_10 PAR-CLIP data was present in ERX177622. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_3_12 PAR-CLIP data was present in ERX177623. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_1 PAR-CLIP data was present in ERX177627. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_5 PAR-CLIP data was present in ERX177631. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_9 PAR-CLIP data was present in ERX177632. RNA binding protein: AGO2. Condition:p53_V_AGO_CLIP_4_10 PAR-CLIP data was present in ERX177633. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_11 PAR-CLIP data was present in ERX177634. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_4_12 PAR-CLIP data was present in ERX177618. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_3_8 PAR-CLIP data was present in ERX177619. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_9 PAR-CLIP data was present in ERX177621. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_3_11 PAR-CLIP data was present in ERX177629. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_7 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
Experimental Support 6 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760583. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_A PAR-CLIP data was present in SRX1760591. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_B PAR-CLIP data was present in SRX1760641. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000330165.8 | 3UTR | AUACUGUCUCCUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000330165.8 | 3UTR | GUCAUACUGUCUCCUCCCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000330165.8 | 3UTR | GUCAUACUGUCUCCUCCCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000330165.8 | 3UTR | GUCAUACUGUCUCCUCCCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000330165.8 | 3UTR | UCAUACUGUCUCCUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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