pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CRLF3   
Synonyms CREME-9, CREME9, CRLM9, CYTOR4, FRWS, p48.2
Description cytokine receptor like factor 3
Transcript NM_015986   
Expression
Putative miRNA Targets on CRLF3
3'UTR of CRLF3
(miRNA target sites are highlighted)
>CRLF3|NM_015986|3'UTR
   1 ATGTTTGGGTGCTTGGCTTTGGTTTTCAGGGTCTAACGTAGCTGTCCTCAGCCCAGCGTAGTTGTAATTGCTTTAAAAAA
  81 AAAGTTGAATTCATCTCTAACTTAGGCCATTGGAAAGTGTTTACTGGATTCATTTTGTAATATTTTAGCAAAAAGAGACT
 161 TCAATGTTGTGGACAAAATCATACAATTCAGTCAATTTTATTTTTAGCATACTGTTAAATATCACATCACAATAAAAATC
 241 AAATTGGCATTAAAAGTATAGAAGATATAGGAAGTTCTATACCCTTCCACTGTACTTCTCAAAGTTGGTTATTAGACCAG
 321 GAAAACTTAATGTAATATTATTTTTAAAATCATCTTAAAGGATCCAAGTCCATGTAACTCTTTAGAACAAGAGGAATAGG
 401 TCAGATAGAAGAAGCTGTGTAATGTATTAATACATCCGTTCATGTGCTGTCCACATGAATGTGTTGACTGTGCTCTCCAT
 481 GTTCAGGTATTTGTAAGCAGTGTTGACTTTTATCCCCTCTTCAGTAATCTTTAAGTCCCCAAAACATTATAACTTTTTCT
 561 TTTTTTGTTGAGACGGAGTCTCACTCTTGTCACTCAGGCTGGAGTGCAGTGGTGTGATCTCAGTTCACTGCAACCTCTGC
 641 CTCCCACGTTCAAGCGATCCTCCTGCCTCAGGCTCCTGAGTAGCTGGGATTACAGGCGTCGGCCACCACACCTGGCTAAT
 721 TTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGTTCCACCCA
 801 CCTCAGCCTTCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGCAGTGGACCAATTTTTGTATTTTTTTAAATGCTTGAC
 881 CAAGTGTCTAAAATAGGCAAGTAGTACCTTTTGTTCTTTCATTGCAATTTGATACAGTATAGGCTACAGTATTTTTACAG
 961 GGTAAAACTAGTTATGGCAGTAGTATGCACAGCAGTGTTAGCCATTTCATATGTATGTAATATGCACGTGTGTATCCAAT
1041 CTGCCTGTGACATGCATTTTACTCTTTGCAGAGAATGAGCTGCAGTCCAGTTTAATGTCAGTTTAATAAGTGGTCTCTTT
1121 TTAGCAGAGCAAAAAAATATAGCGTAAATACTTATTTTTTTTAAAAACTTACTTAAATTTGTGTGTAAAATATTTATTTG
1201 AAGGACTTTAATATGTAAAAATAATTGTCTTCTATGCCACCCTACAGATTTTATTTTAATGTGAATTATTTTTTTCATTT
1281 CATTTTTACCAGTATAGTAAAAAAGTAGAAAAGCAAGTATGATATTTTTGTAAGATAATTTATTTGGGGATTCATGTTCC
1361 CTGTTAGACAATCATGACCTTTTCTACTTGTCTTTTTATATATAAGTAGTAGATTTCCACTTGTTTAGGGATTAAGAAGA
1441 TGTTCTAGAATGTAGATACCTTGTCCAGCCATAGGAATCAAAATAAAAAACTAAAAAAGTTCAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acTGCAACCTCTGCCTCCCAc 3'
627 - 647 167.00 -24.90
2
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || |||  :|||:||| 
Target 5' caccCA-CCTCAGCCTTCCAa 3'
795 - 814 136.00 -14.30
3
miRNA  3' ugaCGUC-GGA-ACUGGAGGGUc 5'
             | || :|| |  |||:||| 
Target 5' tagGAAGTTCTATACCCTTCCAc 3'
268 - 290 130.00 -9.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30145734 27 COSMIC
COSN32054044 49 COSMIC
COSN30138682 74 COSMIC
COSN24297102 75 COSMIC
COSN15324211 80 COSMIC
COSN18740772 92 COSMIC
COSN30526287 95 COSMIC
COSN30495179 159 COSMIC
COSN18740771 162 COSMIC
COSN30493228 176 COSMIC
COSN30162157 180 COSMIC
COSN13710987 198 COSMIC
COSN5219854 589 COSMIC
COSN26687119 702 COSMIC
COSN22823920 797 COSMIC
COSN22481257 838 COSMIC
COSN15129401 949 COSMIC
COSN32152931 955 COSMIC
COSN29147379 1082 COSMIC
COSN8834440 1152 COSMIC
COSN25095056 1161 COSMIC
COSN24076442 1162 COSMIC
rs141870697 92 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs113946501 1 dbSNP
rs1359996555 3 dbSNP
rs751676888 6 dbSNP
rs36124437 10 dbSNP
rs1170581496 11 dbSNP
rs199632265 12 dbSNP
rs200481377 13 dbSNP
rs764159202 15 dbSNP
rs201413764 18 dbSNP
rs202178927 22 dbSNP
rs1439679633 25 dbSNP
rs775099954 29 dbSNP
rs769690770 30 dbSNP
rs1462341521 31 dbSNP
rs759446160 35 dbSNP
rs776707005 36 dbSNP
rs927720567 37 dbSNP
rs200555762 38 dbSNP
rs376592166 39 dbSNP
rs369576764 43 dbSNP
rs373611481 44 dbSNP
rs748961815 48 dbSNP
rs777270129 48 dbSNP
rs1173298693 51 dbSNP
rs1403537745 55 dbSNP
rs753004094 57 dbSNP
rs1001699903 58 dbSNP
rs767808026 67 dbSNP
rs74724756 72 dbSNP
rs1214449241 73 dbSNP
rs907471098 75 dbSNP
rs1344328882 79 dbSNP
rs3752020 80 dbSNP
rs946202420 84 dbSNP
rs891986421 85 dbSNP
rs926200996 86 dbSNP
rs1423262100 90 dbSNP
rs141870697 92 dbSNP
rs1167184917 94 dbSNP
rs1388241942 95 dbSNP
rs766368183 97 dbSNP
rs1476234612 98 dbSNP
rs1168644892 102 dbSNP
rs936446912 102 dbSNP
rs1415074361 111 dbSNP
rs1181820150 113 dbSNP
rs561005488 114 dbSNP
rs1029763805 116 dbSNP
rs1229293938 120 dbSNP
rs1269003136 120 dbSNP
rs549054794 120 dbSNP
rs1291081079 135 dbSNP
rs1234929459 137 dbSNP
rs998239908 143 dbSNP
rs964128930 146 dbSNP
rs1211798585 148 dbSNP
rs1018728198 153 dbSNP
rs1291765817 155 dbSNP
rs1205748590 156 dbSNP
rs1452032330 156 dbSNP
rs1192180992 157 dbSNP
rs1246164158 159 dbSNP
rs1451216751 159 dbSNP
rs1005541016 160 dbSNP
rs1384027995 162 dbSNP
rs3752021 162 dbSNP
rs193109854 164 dbSNP
rs1336353774 165 dbSNP
rs563511410 166 dbSNP
rs188532658 173 dbSNP
rs994059979 175 dbSNP
rs1314477477 178 dbSNP
rs578160451 179 dbSNP
rs1376931185 181 dbSNP
rs1247075240 182 dbSNP
rs1285064228 183 dbSNP
rs1350195861 185 dbSNP
rs1204371352 186 dbSNP
rs1265969655 191 dbSNP
rs367676137 192 dbSNP
rs1209218866 194 dbSNP
rs761429828 195 dbSNP
rs781648865 196 dbSNP
rs560015527 200 dbSNP
rs1447317330 206 dbSNP
rs3752022 206 dbSNP
rs769061455 214 dbSNP
rs1368736310 222 dbSNP
rs985253727 228 dbSNP
rs1399755113 230 dbSNP
rs370176604 232 dbSNP
rs578004969 232 dbSNP
rs947797596 232 dbSNP
rs916330240 242 dbSNP
rs1458234178 244 dbSNP
rs1336728501 248 dbSNP
rs1400669247 251 dbSNP
rs1397906804 252 dbSNP
rs184626452 253 dbSNP
rs1334879174 258 dbSNP
rs3752023 260 dbSNP
rs936338765 261 dbSNP
rs556045367 262 dbSNP
rs1034276868 264 dbSNP
rs536333782 265 dbSNP
rs1001480676 268 dbSNP
rs926232246 269 dbSNP
rs1201717355 271 dbSNP
rs1482224341 271 dbSNP
rs977663444 274 dbSNP
rs1256180877 284 dbSNP
rs971408309 285 dbSNP
rs967576948 287 dbSNP
rs1413705440 295 dbSNP
rs1024957902 296 dbSNP
rs1176129616 308 dbSNP
rs1376472424 311 dbSNP
rs922783470 314 dbSNP
rs1320248030 315 dbSNP
rs776932923 318 dbSNP
rs1164221265 320 dbSNP
rs1173259834 325 dbSNP
rs976942282 327 dbSNP
rs1395794248 328 dbSNP
rs1408242290 331 dbSNP
rs187115697 332 dbSNP
rs1351326247 333 dbSNP
rs1422579999 338 dbSNP
rs1410879690 341 dbSNP
rs891929668 343 dbSNP
rs7221817 345 dbSNP
rs1000578109 347 dbSNP
rs1439479413 351 dbSNP
rs1340927806 357 dbSNP
rs1202391089 359 dbSNP
rs1253583952 360 dbSNP
rs1018345438 361 dbSNP
rs556649251 373 dbSNP
rs138745132 378 dbSNP
rs952760530 383 dbSNP
rs1025620455 384 dbSNP
rs571405857 385 dbSNP
rs1373008799 387 dbSNP
rs1489284322 391 dbSNP
rs1265479794 393 dbSNP
rs994092915 396 dbSNP
rs546498505 397 dbSNP
rs931634303 399 dbSNP
rs866703825 402 dbSNP
rs1220270346 408 dbSNP
rs531967163 412 dbSNP
rs534638963 413 dbSNP
rs1292741922 414 dbSNP
rs567081646 415 dbSNP
rs940633145 415 dbSNP
rs907679903 420 dbSNP
rs1024853114 423 dbSNP
rs547267622 424 dbSNP
rs1364338094 438 dbSNP
rs1225594219 443 dbSNP
rs1012074471 450 dbSNP
rs1276100873 451 dbSNP
rs1342456554 453 dbSNP
rs1220303650 455 dbSNP
rs1375919074 458 dbSNP
rs1489712919 461 dbSNP
rs751769707 462 dbSNP
rs575014970 464 dbSNP
rs1448170915 466 dbSNP
rs894918490 470 dbSNP
rs1053523881 472 dbSNP
rs1443340425 475 dbSNP
rs182827768 479 dbSNP
rs530270760 480 dbSNP
rs980178312 481 dbSNP
rs1387851853 486 dbSNP
rs1456469026 493 dbSNP
rs1299189179 501 dbSNP
rs775130575 503 dbSNP
rs1227243033 510 dbSNP
rs1347397495 510 dbSNP
rs191231997 515 dbSNP
rs1323126798 517 dbSNP
rs1222824474 522 dbSNP
rs1267853942 523 dbSNP
rs1463953908 528 dbSNP
rs570146401 532 dbSNP
rs557869116 533 dbSNP
rs1175959181 535 dbSNP
rs1010866097 536 dbSNP
rs1024317779 536 dbSNP
rs1424569918 538 dbSNP
rs946306702 539 dbSNP
rs1190061960 543 dbSNP
rs373790750 549 dbSNP
rs772284519 551 dbSNP
rs977351477 551 dbSNP
rs12006 553 dbSNP
rs753864745 554 dbSNP
rs911355033 556 dbSNP
rs1300536430 559 dbSNP
rs984233770 559 dbSNP
rs1050168583 560 dbSNP
rs1236296349 562 dbSNP
rs995959223 562 dbSNP
rs1312934104 563 dbSNP
rs1230606669 567 dbSNP
rs1269374728 567 dbSNP
rs901470074 567 dbSNP
rs1040041050 568 dbSNP
rs187619163 574 dbSNP
rs150564195 575 dbSNP
rs907774668 577 dbSNP
rs1483707245 583 dbSNP
rs544770203 583 dbSNP
rs1471522666 587 dbSNP
rs369689866 587 dbSNP
rs930477801 587 dbSNP
rs1408684792 588 dbSNP
rs927165338 588 dbSNP
rs1413797560 589 dbSNP
rs866918072 589 dbSNP
rs1024879964 591 dbSNP
rs535353764 593 dbSNP
rs1012518190 598 dbSNP
rs1348215910 599 dbSNP
rs894998150 607 dbSNP
rs1289328683 621 dbSNP
rs1344947079 623 dbSNP
rs1032563411 630 dbSNP
rs1280831031 631 dbSNP
rs1312919252 634 dbSNP
rs1359256348 639 dbSNP
rs141728465 643 dbSNP
rs183910421 647 dbSNP
rs1184116413 648 dbSNP
rs1233195136 653 dbSNP
rs148019594 655 dbSNP
rs1427161952 661 dbSNP
rs1042069150 664 dbSNP
rs775893629 670 dbSNP
rs9911885 672 dbSNP
rs1425813849 673 dbSNP
rs901455484 675 dbSNP
rs956263363 677 dbSNP
rs1193837334 680 dbSNP
rs1434754364 688 dbSNP
rs9910234 697 dbSNP
rs1368892675 698 dbSNP
rs979046738 699 dbSNP
rs545451847 700 dbSNP
rs544639504 701 dbSNP
rs1450877021 702 dbSNP
rs577555638 703 dbSNP
rs1219080959 706 dbSNP
rs911401361 707 dbSNP
rs1019141051 708 dbSNP
rs1187410730 709 dbSNP
rs1387720992 710 dbSNP
rs1201900302 711 dbSNP
rs1004536108 713 dbSNP
rs1483474359 714 dbSNP
rs984655753 715 dbSNP
rs1048960599 717 dbSNP
rs1295515395 720 dbSNP
rs930571078 726 dbSNP
rs552595460 728 dbSNP
rs746356501 731 dbSNP
rs1354469899 732 dbSNP
rs905666038 734 dbSNP
rs1044227893 737 dbSNP
rs1468867039 741 dbSNP
rs192030662 742 dbSNP
rs917326999 744 dbSNP
rs1465907510 746 dbSNP
rs989324419 755 dbSNP
rs1218151059 756 dbSNP
rs1367577551 764 dbSNP
rs567256969 767 dbSNP
rs536719100 769 dbSNP
rs918667212 770 dbSNP
rs9911658 773 dbSNP
rs1396933243 774 dbSNP
rs1457182440 778 dbSNP
rs184172132 781 dbSNP
rs954278106 787 dbSNP
rs191921162 789 dbSNP
rs1401969729 801 dbSNP
rs759251409 804 dbSNP
rs537270446 805 dbSNP
rs976928943 814 dbSNP
rs1402094104 815 dbSNP
rs1170706566 816 dbSNP
rs1338947639 820 dbSNP
rs1247184122 823 dbSNP
rs1294903709 824 dbSNP
rs9912283 832 dbSNP
rs1227537699 833 dbSNP
rs145737073 834 dbSNP
rs959518741 837 dbSNP
rs1331098653 847 dbSNP
rs187582109 848 dbSNP
rs9890558 850 dbSNP
rs9890555 854 dbSNP
rs1189115788 855 dbSNP
rs547848421 860 dbSNP
rs1459245091 867 dbSNP
rs1157353748 870 dbSNP
rs1258960756 870 dbSNP
rs1414875155 876 dbSNP
rs1454713597 879 dbSNP
rs1198013167 883 dbSNP
rs994690821 890 dbSNP
rs1316176037 894 dbSNP
rs1397854190 896 dbSNP
rs529578687 897 dbSNP
rs1350076584 898 dbSNP
rs905801996 899 dbSNP
rs1044318753 901 dbSNP
rs117699887 902 dbSNP
rs895677104 904 dbSNP
rs1053200418 905 dbSNP
rs1212391441 914 dbSNP
rs1280663414 915 dbSNP
rs111654135 917 dbSNP
rs1482499539 918 dbSNP
rs1180496004 920 dbSNP
rs901520416 921 dbSNP
rs1420210470 922 dbSNP
rs1198860215 927 dbSNP
rs1376415179 928 dbSNP
rs1449483578 932 dbSNP
rs1174308396 933 dbSNP
rs934748149 934 dbSNP
rs1401943626 935 dbSNP
rs1039072595 937 dbSNP
rs1428011156 941 dbSNP
rs762250576 944 dbSNP
rs890027089 953 dbSNP
rs1048595953 955 dbSNP
rs931450771 957 dbSNP
rs925903208 958 dbSNP
rs918703228 961 dbSNP
rs1300580840 963 dbSNP
rs543606822 964 dbSNP
rs1397477428 968 dbSNP
rs1235891604 971 dbSNP
rs531943890 972 dbSNP
rs1303432768 977 dbSNP
rs1341033005 981 dbSNP
rs1202501112 983 dbSNP
rs1252696157 986 dbSNP
rs1481197267 990 dbSNP
rs1209592352 994 dbSNP
rs570225312 997 dbSNP
rs1265926600 998 dbSNP
rs1164539198 999 dbSNP
rs1054397 1009 dbSNP
rs977449565 1010 dbSNP
rs1170797593 1013 dbSNP
rs917926372 1015 dbSNP
rs1355327131 1016 dbSNP
rs991192735 1017 dbSNP
rs1292702646 1020 dbSNP
rs1388516811 1023 dbSNP
rs959349780 1025 dbSNP
rs1442934640 1027 dbSNP
rs545084049 1028 dbSNP
rs1363913372 1032 dbSNP
rs1225524693 1034 dbSNP
rs1297333870 1034 dbSNP
rs908713057 1036 dbSNP
rs1244558902 1039 dbSNP
rs577346638 1040 dbSNP
rs182831527 1042 dbSNP
rs1263998029 1051 dbSNP
rs979265529 1052 dbSNP
rs1238976559 1056 dbSNP
rs1247949886 1057 dbSNP
rs1463647380 1062 dbSNP
rs966530967 1064 dbSNP
rs540638754 1067 dbSNP
rs1020721877 1068 dbSNP
rs1420545730 1068 dbSNP
rs1456647112 1080 dbSNP
rs1292075388 1085 dbSNP
rs997224414 1095 dbSNP
rs537615536 1097 dbSNP
rs1260800105 1099 dbSNP
rs1165639562 1100 dbSNP
rs79294439 1101 dbSNP
rs1432309872 1104 dbSNP
rs1290073108 1106 dbSNP
rs1362255253 1111 dbSNP
rs1378142268 1113 dbSNP
rs1395033017 1115 dbSNP
rs1311038168 1119 dbSNP
rs77454145 1126 dbSNP
rs1007635627 1127 dbSNP
rs1234273955 1130 dbSNP
rs1268109936 1134 dbSNP
rs536804249 1136 dbSNP
rs1022833814 1138 dbSNP
rs1218081245 1139 dbSNP
rs1242714991 1140 dbSNP
rs1324935223 1141 dbSNP
rs1386854241 1142 dbSNP
rs890067529 1144 dbSNP
rs1161421247 1148 dbSNP
rs1476092855 1149 dbSNP
rs572222501 1151 dbSNP
rs1048663775 1154 dbSNP
rs1455532004 1155 dbSNP
rs1160674819 1156 dbSNP
rs1345198320 1157 dbSNP
rs995729654 1157 dbSNP
rs762049077 1158 dbSNP
rs897345963 1158 dbSNP
rs1356955589 1159 dbSNP
rs1157868433 1161 dbSNP
rs9911556 1162 dbSNP
rs1208083898 1163 dbSNP
rs1225908063 1163 dbSNP
rs1311733699 1163 dbSNP
rs568646811 1163 dbSNP
rs772739466 1163 dbSNP
rs904619519 1163 dbSNP
rs1188417647 1168 dbSNP
rs774983506 1168 dbSNP
rs1248685668 1169 dbSNP
rs558209695 1176 dbSNP
rs1468540759 1177 dbSNP
rs917984627 1178 dbSNP
rs1055169193 1181 dbSNP
rs771652481 1189 dbSNP
rs937999130 1190 dbSNP
rs925280540 1191 dbSNP
rs1041267472 1196 dbSNP
rs1432146840 1197 dbSNP
rs748608772 1200 dbSNP
rs1376935491 1203 dbSNP
rs1434902118 1210 dbSNP
rs1307811175 1212 dbSNP
rs908686926 1214 dbSNP
rs185459667 1217 dbSNP
rs548793220 1220 dbSNP
rs1444791202 1225 dbSNP
rs1355100633 1226 dbSNP
rs1217574187 1227 dbSNP
rs1305657553 1227 dbSNP
rs1367479478 1227 dbSNP
rs1348887756 1228 dbSNP
rs1285752096 1230 dbSNP
rs1204621388 1231 dbSNP
rs539908451 1238 dbSNP
rs1435924019 1241 dbSNP
rs1206336647 1244 dbSNP
rs945256886 1245 dbSNP
rs1477635473 1246 dbSNP
rs1054400 1251 dbSNP
rs1396287057 1255 dbSNP
rs1454327298 1256 dbSNP
rs1276249952 1259 dbSNP
rs1416916932 1261 dbSNP
rs1436518872 1264 dbSNP
rs1329916670 1265 dbSNP
rs975880720 1268 dbSNP
rs952911264 1269 dbSNP
rs920326931 1270 dbSNP
rs1227747080 1276 dbSNP
rs535680925 1276 dbSNP
rs202019708 1278 dbSNP
rs369210348 1278 dbSNP
rs1361162236 1283 dbSNP
rs146742456 1286 dbSNP
rs58824755 1286 dbSNP
rs781696329 1286 dbSNP
rs1216146241 1289 dbSNP
rs973166746 1291 dbSNP
rs1450980498 1294 dbSNP
rs1211810621 1295 dbSNP
rs547783950 1295 dbSNP
rs1427480686 1296 dbSNP
rs1014132165 1297 dbSNP
rs60546131 1297 dbSNP
rs796689542 1297 dbSNP
rs1173401542 1298 dbSNP
rs535854744 1300 dbSNP
rs1017753882 1301 dbSNP
rs1477852388 1305 dbSNP
rs1240033876 1306 dbSNP
rs1375971046 1309 dbSNP
rs1476161085 1314 dbSNP
rs1168865466 1317 dbSNP
rs181215652 1319 dbSNP
rs550441443 1322 dbSNP
rs1395830125 1324 dbSNP
rs1488898574 1324 dbSNP
rs999078744 1325 dbSNP
rs904399166 1328 dbSNP
rs1328449881 1329 dbSNP
rs1431685394 1335 dbSNP
rs1043157284 1338 dbSNP
rs1263113317 1339 dbSNP
rs1027299264 1343 dbSNP
rs1283811061 1343 dbSNP
rs996943952 1344 dbSNP
rs1275014339 1346 dbSNP
rs899796359 1346 dbSNP
rs995760653 1359 dbSNP
rs1280236952 1363 dbSNP
rs944276154 1363 dbSNP
rs887345121 1367 dbSNP
rs1193542734 1369 dbSNP
rs150467009 1370 dbSNP
rs1015802302 1375 dbSNP
rs1014165641 1376 dbSNP
rs1419253188 1379 dbSNP
rs140549787 1383 dbSNP
rs80140538 1384 dbSNP
rs896590224 1386 dbSNP
rs1055633296 1387 dbSNP
rs1387148879 1391 dbSNP
rs938087116 1402 dbSNP
rs1340978409 1403 dbSNP
rs1353758436 1403 dbSNP
rs1412731067 1404 dbSNP
rs780119243 1405 dbSNP
rs1294845824 1406 dbSNP
rs948474402 1422 dbSNP
rs1258890360 1424 dbSNP
rs1352290449 1427 dbSNP
rs903867931 1429 dbSNP
rs189300161 1431 dbSNP
rs771002970 1438 dbSNP
rs1213499289 1441 dbSNP
rs1258591916 1446 dbSNP
rs1472556136 1448 dbSNP
rs1180355382 1451 dbSNP
rs1366032341 1452 dbSNP
rs1470575364 1454 dbSNP
rs1172028140 1456 dbSNP
rs1334620020 1457 dbSNP
rs1414114821 1459 dbSNP
rs1404254690 1460 dbSNP
rs1390591343 1461 dbSNP
rs1172831641 1463 dbSNP
rs981375166 1464 dbSNP
rs1337433459 1468 dbSNP
rs1239176809 1469 dbSNP
rs559041897 1477 dbSNP
rs151281892 1483 dbSNP
rs571081571 1484 dbSNP
rs1031986406 1486 dbSNP
rs1482959644 1489 dbSNP
rs913818289 1490 dbSNP
rs1194400511 1494 dbSNP
rs749169235 1495 dbSNP
rs1253320299 1496 dbSNP
rs1438846100 1497 dbSNP
rs1198265967 1498 dbSNP
rs1393273552 1499 dbSNP
rs977371880 1499 dbSNP
rs1174563227 1500 dbSNP
rs968507717 1500 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acUGCAACCUCUGCCUCCCAc 3'
3 - 23
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acUGCAACCUCUGCCUCCCAc 3'
6 - 26
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000324238.6 | 3UTR | AGUUCACUGCAACCUCUGCCUCCCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000324238.6 | 3UTR | UCACUGCAACCUCUGCCUCCCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

Error report submission