pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SCAMP4   
Synonyms SCAMP-4
Description secretory carrier membrane protein 4
Transcript NM_079834   
Expression
Putative miRNA Targets on SCAMP4
3'UTR of SCAMP4
(miRNA target sites are highlighted)
>SCAMP4|NM_079834|3'UTR
   1 AGGGAGCCTGCCCTGCCCCCACCGCCCACCACCTCCTCCCCTTCATTCCTGCTGCTACCCCTGGTCCCGAGGGCTGGGAG
  81 TACCTGGGGCCCCATCCCCCCAGCTGGGATGGTGGAAGCCGGTGGTGGCCACGGACCGCCCCCCTCCTGCCAGGGCCACA
 161 GAACCCGTGTTCATCTCATCCGAGAGCGGAGTTCCTCACAAGCACTCCCCAGCAGCCCTTGGCCTCTGCCGTCCACAGGA
 241 CGCCCTCTTGCTCCCGGAAACGTGTGGTCACCCGCCGTCCACTGCACGGCTGGTACGGCCTTGTCTTCAGGTCTCGAGGC
 321 CTGACTCCGGGGGACAGGTGGCAGCAGGTCGGCCGCCCTCCCGTCCTCCCAGAGCTGCTGGCGCTGAGGTCAGAGCGGGT
 401 CTGATGGGGAGCTCCGTCTCACCGGCCACCCGCCGTCACCATGGCAGATGCCCTTGGCCGGAACTAATAAGAGGCGTCGG
 481 GGCCAGCTTCCGGTCCCCTGCAGTGATAGAGGGCTTGGTGCCTAGCTGAGTCCTCGCTGTCCCCGCCATCCCCTGATCTG
 561 TGCGGCTCCAGCCTCGCCCCCTCCCCACGTGCACCATACCTGGGGAGTTCCTGGTCCAGGGTATCCTGGGGCCACCCTCC
 641 CTGCCTCCAAAACAGGGATCCCTGGCAGGCTGTCTTTCCACGCCCCTGAGTTCAGAGTCGGGGACCCAGGCCAGGTCGGG
 721 AGCACAGCCGCTCCCCAAACCCAGCAAACCGGCAGAGAGCCGGTTTCCCAGCAGCCGGAGCCCTGCAGGAGAGGCCTTTG
 801 TGTTTTGTTTTGTTTTGTTTTTTCTCTTTTGAGACAAGAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATC
 881 TCGGCTCACTGCAACCTCTGCCTCCCGTGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAATAGCTGGGATTACAGTTGC
 961 CTGCCACCACGCCCAGCTAATTTTTATATTTTTAGTACAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC
1041 TGACCTCAAGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATAATAGGTGTCAGCCACCGCGCCCAGCCTGGAGTG
1121 GCCTTTTATGAGAGGGGACCCGTCAAATCTGTGCCTTATGGAGGGGTCCGGCAGCGGCCACAATTGTCTTGTCCCCTCAC
1201 CCCCCAACTCCCCCTGGAACACCTCTCCCAGGCAAGACATTTTCACAGCACCATTCACAACGGTTGGGCCAAAAAGAAAC
1281 TTTTCCTTCATCATTTCCTGCACTCGCTGACCACAACTTTGGACACCCCAGGCTGCCACCCCTCCCCACCCGTTCACCCC
1361 CAGGATGCTGTTGCTGTAGGACGCCTGCTGCCCTGGAGCCCTCCCCAGGATGTGAGCCAGTCCCCTCGCTGGTACGGAAT
1441 GCCGCTGGGTGCCCGGAGGCGGCCATGGTGTCTCGATGGACGGCAGCCAGGATGGAGCACCCATGGGTCTCACGGCCATG
1521 CTTCAGGGTCTTCAGGTCCTGCCCCCGGCCAGTCTGCCAAGAGGCACCCCCTTCCCCAGCCTCTCGCCTGCACTGATGCA
1601 GACAAAATCTCACCTGGCAGGCCCAACCCCCCCCCACCCCTCCCCCGCCGTGTGTGGCCCCTCGCCGCATCGTTGGGGTT
1681 TTGTTATGTGAAAATATCCTGGAAATAAATACATGTTTCTGCACTTAGAGCCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaGGUGACGAUGUUG-GAGGGUCu 5'
            || |||  ||| | ||||||| 
Target 5' tcCCCCTGGAACACCTCTCCCAGg 3'
1209 - 1232 165.00 -21.50
2
miRNA  3' aaGGUGACGAUGUUGGAGGGUcu 5'
            |: ||||  ||:|||||||  
Target 5' ttCTCCTGCCTCAGCCTCCCAaa 3'
919 - 941 153.00 -24.70
3
miRNA  3' aaGGUGACGAUGUUGGAGGGUCu 5'
            ||:|  :  |: |||||||| 
Target 5' ggCCGCCCTCCCGTCCTCCCAGa 3'
351 - 373 153.00 -23.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26993825 16 COSMIC
COSN13789891 24 COSMIC
COSN14824360 32 COSMIC
COSN30165600 36 COSMIC
COSN20047693 69 COSMIC
COSN31596005 171 COSMIC
COSN31555291 252 COSMIC
COSN28656297 371 COSMIC
COSN26162627 460 COSMIC
COSN25042340 559 COSMIC
COSN27802292 681 COSMIC
COSN9350197 775 COSMIC
COSN20115289 838 COSMIC
COSM7230644 1107 COSMIC
COSM6003790 1120 COSMIC
COSM8654125 1226 COSMIC
COSM3100868 1262 COSMIC
COSM8639032 1290 COSMIC
COSM6003447 1384 COSMIC
COSM8887156 1445 COSMIC
COSM8657704 1475 COSMIC
COSM6280829 1496 COSMIC
COSM7710918 1512 COSMIC
COSM9850419 1626 COSMIC
COSM9849268 1627 COSMIC
COSM9849624 1628 COSMIC
COSM1172602 1636 COSMIC
COSM9849661 1636 COSMIC
COSM5034170 1642 COSMIC
COSM3766305 1660 COSMIC
COSM5031927 1673 COSMIC
COSN31595999 1714 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs984432087 4 dbSNP
rs375942866 7 dbSNP
rs759102301 8 dbSNP
rs1468310240 9 dbSNP
rs748324244 9 dbSNP
rs1344186014 11 dbSNP
rs1417454265 12 dbSNP
rs1315228104 13 dbSNP
rs756595850 14 dbSNP
rs1356500509 15 dbSNP
rs767045975 17 dbSNP
rs1282880453 18 dbSNP
rs752295255 19 dbSNP
rs760315022 24 dbSNP
rs370175173 25 dbSNP
rs753646131 28 dbSNP
rs1213248636 29 dbSNP
rs1202630076 30 dbSNP
rs922887096 35 dbSNP
rs779042714 40 dbSNP
rs1269448361 42 dbSNP
rs1338363042 44 dbSNP
rs1235601757 45 dbSNP
rs1470890291 46 dbSNP
rs1177321638 49 dbSNP
rs1233334950 52 dbSNP
rs1469479723 58 dbSNP
rs934132794 59 dbSNP
rs1305441501 60 dbSNP
rs565149784 61 dbSNP
rs981312834 62 dbSNP
rs985662043 64 dbSNP
rs1380274437 65 dbSNP
rs1336388447 66 dbSNP
rs1450716282 69 dbSNP
rs911275303 70 dbSNP
rs769305904 72 dbSNP
rs868179027 73 dbSNP
rs569277285 74 dbSNP
rs972504872 76 dbSNP
rs902514257 78 dbSNP
rs1425401099 79 dbSNP
rs1385632879 85 dbSNP
rs1394591014 85 dbSNP
rs1442371643 88 dbSNP
rs140344969 89 dbSNP
rs1485221833 90 dbSNP
rs935374418 90 dbSNP
rs1056293209 93 dbSNP
rs896432133 94 dbSNP
rs112133628 96 dbSNP
rs943383361 101 dbSNP
rs1012463640 102 dbSNP
rs559960018 116 dbSNP
rs887485266 117 dbSNP
rs1382869872 119 dbSNP
rs1287116431 121 dbSNP
rs756570691 122 dbSNP
rs1014713523 124 dbSNP
rs1442505663 126 dbSNP
rs139387023 133 dbSNP
rs867651590 134 dbSNP
rs1022743395 138 dbSNP
rs1030300435 139 dbSNP
rs1193465266 139 dbSNP
rs1215787701 140 dbSNP
rs1291625606 141 dbSNP
rs573756259 143 dbSNP
rs1344672485 144 dbSNP
rs372413412 145 dbSNP
rs747808576 148 dbSNP
rs1254666844 154 dbSNP
rs946909789 157 dbSNP
rs557542798 168 dbSNP
rs1422528072 175 dbSNP
rs919734005 179 dbSNP
rs1168206133 182 dbSNP
rs187733041 183 dbSNP
rs527412304 188 dbSNP
rs192726780 189 dbSNP
rs552223482 190 dbSNP
rs1420920860 199 dbSNP
rs766699917 200 dbSNP
rs1268799669 201 dbSNP
rs1197816085 203 dbSNP
rs1484281554 207 dbSNP
rs1251655443 211 dbSNP
rs910674321 215 dbSNP
rs981052113 215 dbSNP
rs1257941844 217 dbSNP
rs749082224 219 dbSNP
rs1169080129 222 dbSNP
rs923283117 231 dbSNP
rs947999726 232 dbSNP
rs1053397483 241 dbSNP
rs770794299 242 dbSNP
rs112436547 243 dbSNP
rs540131431 244 dbSNP
rs1173895801 248 dbSNP
rs1006095259 256 dbSNP
rs555412908 257 dbSNP
rs897605399 262 dbSNP
rs570359517 263 dbSNP
rs1002590017 264 dbSNP
rs531299009 265 dbSNP
rs1030003406 266 dbSNP
rs1258548606 268 dbSNP
rs1204532867 274 dbSNP
rs549844355 275 dbSNP
rs1007136919 276 dbSNP
rs759505369 277 dbSNP
rs371832691 278 dbSNP
rs979600305 279 dbSNP
rs1280025388 282 dbSNP
rs1238065727 284 dbSNP
rs113331616 287 dbSNP
rs1338359762 288 dbSNP
rs1026936452 289 dbSNP
rs1242780817 293 dbSNP
rs1334150484 294 dbSNP
rs1477512929 295 dbSNP
rs956803805 297 dbSNP
rs992528630 298 dbSNP
rs1468978235 301 dbSNP
rs1370559779 303 dbSNP
rs1192152328 309 dbSNP
rs1420618923 310 dbSNP
rs917931601 315 dbSNP
rs948084206 316 dbSNP
rs985273068 317 dbSNP
rs911067827 320 dbSNP
rs1044983856 322 dbSNP
rs964763657 327 dbSNP
rs909143010 329 dbSNP
rs941828772 330 dbSNP
rs934677551 332 dbSNP
rs1036216393 333 dbSNP
rs568009072 334 dbSNP
rs1397566162 336 dbSNP
rs997276661 343 dbSNP
rs1044540734 346 dbSNP
rs906059599 347 dbSNP
rs1295098489 351 dbSNP
rs764101660 352 dbSNP
rs1232516630 354 dbSNP
rs1263470325 355 dbSNP
rs888784926 356 dbSNP
rs1293809043 358 dbSNP
rs1207150130 363 dbSNP
rs1007661894 364 dbSNP
rs1289222839 367 dbSNP
rs1488030519 370 dbSNP
rs3810415 371 dbSNP
rs1362092333 374 dbSNP
rs1027067893 383 dbSNP
rs553536276 384 dbSNP
rs114349190 389 dbSNP
rs761981333 396 dbSNP
rs1304210286 397 dbSNP
rs1000964022 398 dbSNP
rs765488386 399 dbSNP
rs1172887798 400 dbSNP
rs542864652 401 dbSNP
rs992247562 402 dbSNP
rs918031931 407 dbSNP
rs1481422460 411 dbSNP
rs879381615 414 dbSNP
rs373906254 416 dbSNP
rs981207353 417 dbSNP
rs909098407 419 dbSNP
rs1375462607 424 dbSNP
rs941930481 425 dbSNP
rs1307737814 427 dbSNP
rs902430851 429 dbSNP
rs750841489 432 dbSNP
rs577177963 433 dbSNP
rs933182282 435 dbSNP
rs544590987 436 dbSNP
rs888893088 443 dbSNP
rs1344064916 445 dbSNP
rs1238128912 451 dbSNP
rs376951273 454 dbSNP
rs947638840 459 dbSNP
rs1043135655 460 dbSNP
rs143312528 461 dbSNP
rs1001080241 462 dbSNP
rs1254662522 468 dbSNP
rs1056804171 473 dbSNP
rs896870180 474 dbSNP
rs752085827 475 dbSNP
rs1031248005 476 dbSNP
rs892633030 477 dbSNP
rs1437450710 479 dbSNP
rs755491217 480 dbSNP
rs1462316372 483 dbSNP
rs1263180159 489 dbSNP
rs542505573 492 dbSNP
rs969889370 493 dbSNP
rs1301065569 498 dbSNP
rs560688391 499 dbSNP
rs1373041526 510 dbSNP
rs998059698 513 dbSNP
rs1454753719 514 dbSNP
rs1016282147 517 dbSNP
rs1406990554 518 dbSNP
rs562576050 528 dbSNP
rs1391821044 531 dbSNP
rs527837243 536 dbSNP
rs150470049 537 dbSNP
rs933155375 539 dbSNP
rs1406969673 542 dbSNP
rs1176435708 545 dbSNP
rs564201439 546 dbSNP
rs910280060 551 dbSNP
rs138152619 556 dbSNP
rs1202491389 559 dbSNP
rs549346853 561 dbSNP
rs1254831175 563 dbSNP
rs568050831 564 dbSNP
rs183804350 565 dbSNP
rs918765092 567 dbSNP
rs1377049267 569 dbSNP
rs1248563389 570 dbSNP
rs999467154 576 dbSNP
rs1052616334 577 dbSNP
rs1314546362 578 dbSNP
rs550830129 582 dbSNP
rs565541747 587 dbSNP
rs1290625909 588 dbSNP
rs1025580386 589 dbSNP
rs539579957 590 dbSNP
rs1002691910 592 dbSNP
rs1426247640 594 dbSNP
rs1173334627 597 dbSNP
rs1016397082 608 dbSNP
rs901051915 613 dbSNP
rs1263183169 617 dbSNP
rs1187667605 620 dbSNP
rs1485841331 621 dbSNP
rs1374778130 622 dbSNP
rs1462441871 627 dbSNP
rs1360542593 628 dbSNP
rs149553529 629 dbSNP
rs1169787241 630 dbSNP
rs1309372845 632 dbSNP
rs998112027 636 dbSNP
rs972090060 637 dbSNP
rs1381666148 644 dbSNP
rs1361194137 648 dbSNP
rs1296209034 654 dbSNP
rs1026209968 656 dbSNP
rs1365961910 662 dbSNP
rs1328223898 663 dbSNP
rs774237951 670 dbSNP
rs1456043571 675 dbSNP
rs954808032 680 dbSNP
rs144296257 682 dbSNP
rs372033551 683 dbSNP
rs964607061 686 dbSNP
rs1328207544 687 dbSNP
rs978477219 689 dbSNP
rs1257922732 691 dbSNP
rs1208333132 692 dbSNP
rs138853632 694 dbSNP
rs1252066351 695 dbSNP
rs1034319403 696 dbSNP
rs934314707 700 dbSNP
rs746788814 701 dbSNP
rs1225239080 707 dbSNP
rs1487945146 710 dbSNP
rs914133217 712 dbSNP
rs1345967091 716 dbSNP
rs949670539 718 dbSNP
rs770753996 719 dbSNP
rs993060605 722 dbSNP
rs377463616 726 dbSNP
rs918746628 726 dbSNP
rs116454078 730 dbSNP
rs557731090 731 dbSNP
rs761935793 748 dbSNP
rs1037779354 751 dbSNP
rs899264098 752 dbSNP
rs765169080 756 dbSNP
rs1197234848 758 dbSNP
rs1026322679 762 dbSNP
rs562652586 763 dbSNP
rs1195442860 765 dbSNP
rs1456536783 769 dbSNP
rs1009220901 778 dbSNP
rs1204330908 781 dbSNP
rs1017558869 783 dbSNP
rs1457600301 787 dbSNP
rs141781512 792 dbSNP
rs1230808487 794 dbSNP
rs978593656 795 dbSNP
rs1400665158 796 dbSNP
rs925675891 799 dbSNP
rs1278164727 801 dbSNP
rs1405995142 801 dbSNP
rs1469829016 801 dbSNP
rs955807366 806 dbSNP
rs988396361 809 dbSNP
rs916894917 812 dbSNP
rs1364712043 825 dbSNP
rs1235589382 827 dbSNP
rs201009543 832 dbSNP
rs949787087 832 dbSNP
rs11347146 836 dbSNP
rs398033695 836 dbSNP
rs200645711 838 dbSNP
rs1047068902 839 dbSNP
rs1277899552 841 dbSNP
rs1218964254 843 dbSNP
rs1352623773 845 dbSNP
rs1262103635 847 dbSNP
rs904570218 849 dbSNP
rs1374233369 851 dbSNP
rs111394244 853 dbSNP
rs546377631 854 dbSNP
rs1034291435 857 dbSNP
rs1261017389 859 dbSNP
rs960055350 862 dbSNP
rs1188484932 867 dbSNP
rs1014449102 870 dbSNP
rs1386251572 872 dbSNP
rs568688821 877 dbSNP
rs899210429 881 dbSNP
rs993591428 883 dbSNP
rs751893345 884 dbSNP
rs951576549 886 dbSNP
rs112257334 891 dbSNP
rs984657277 892 dbSNP
rs1262287728 896 dbSNP
rs1215630358 897 dbSNP
rs762581155 898 dbSNP
rs1246222820 900 dbSNP
rs576074220 901 dbSNP
rs187520533 903 dbSNP
rs1281949950 904 dbSNP
rs1297640298 907 dbSNP
rs1327535587 908 dbSNP
rs1298064194 912 dbSNP
rs1398604099 918 dbSNP
rs1367841188 919 dbSNP
rs146240004 923 dbSNP
rs528813362 924 dbSNP
rs1017922253 925 dbSNP
rs547298937 928 dbSNP
rs1411830680 931 dbSNP
rs879417744 940 dbSNP
rs1358635228 944 dbSNP
rs760031960 950 dbSNP
rs1192852132 951 dbSNP
rs1487211072 955 dbSNP
rs1303894147 956 dbSNP
rs975182526 959 dbSNP
rs1450715800 963 dbSNP
rs796418184 970 dbSNP
rs559588978 971 dbSNP
rs533008151 972 dbSNP
rs79919621 975 dbSNP
rs80112196 976 dbSNP
rs77210929 977 dbSNP
rs971458090 987 dbSNP
rs979807905 996 dbSNP
rs946660532 997 dbSNP
rs926846501 1001 dbSNP
rs1043919540 1002 dbSNP
rs1348359877 1003 dbSNP
rs1001557550 1004 dbSNP
rs1486345400 1007 dbSNP
rs1211539591 1015 dbSNP
rs1422973951 1021 dbSNP
rs1169944183 1024 dbSNP
rs768055912 1034 dbSNP
rs1055837589 1035 dbSNP
rs1477541373 1045 dbSNP
rs551537925 1049 dbSNP
rs895815878 1050 dbSNP
rs1014248241 1051 dbSNP
rs1437944286 1059 dbSNP
rs1482174938 1061 dbSNP
rs370626550 1062 dbSNP
rs887325617 1068 dbSNP
rs1410511879 1069 dbSNP
rs1005817169 1071 dbSNP
rs920751848 1076 dbSNP
rs538362934 1085 dbSNP
rs1017500695 1087 dbSNP
rs550250688 1088 dbSNP
rs1436603128 1089 dbSNP
rs1335499422 1092 dbSNP
rs1408228709 1093 dbSNP
rs929497710 1094 dbSNP
rs1048255921 1101 dbSNP
rs1439944028 1104 dbSNP
rs890571307 1104 dbSNP
rs568472083 1105 dbSNP
rs1039052668 1106 dbSNP
rs6510629 1107 dbSNP
rs1310864268 1112 dbSNP
rs554555068 1113 dbSNP
rs913580237 1115 dbSNP
rs1224646649 1118 dbSNP
rs1445621207 1130 dbSNP
rs1307283335 1138 dbSNP
rs1000075930 1142 dbSNP
rs755337655 1143 dbSNP
rs1465463277 1148 dbSNP
rs1161055424 1150 dbSNP
rs1219273192 1150 dbSNP
rs1277912073 1154 dbSNP
rs1379316120 1159 dbSNP
rs1156443293 1160 dbSNP
rs926445959 1162 dbSNP
rs937881455 1166 dbSNP
rs572680108 1170 dbSNP
rs950173374 1171 dbSNP
rs1217830882 1174 dbSNP
rs1238562563 1175 dbSNP
rs777380188 1176 dbSNP
rs200424152 1177 dbSNP
rs1248411732 1179 dbSNP
rs1178279283 1184 dbSNP
rs887135984 1185 dbSNP
rs1236551019 1191 dbSNP
rs750975025 1192 dbSNP
rs1455690695 1199 dbSNP
rs1290500759 1201 dbSNP
rs1173225751 1203 dbSNP
rs201245035 1204 dbSNP
rs868422572 1205 dbSNP
rs1413272186 1208 dbSNP
rs1296003106 1209 dbSNP
rs1368645279 1211 dbSNP
rs1173115351 1213 dbSNP
rs1017229704 1215 dbSNP
rs1421483666 1215 dbSNP
rs1465415005 1221 dbSNP
rs1488193164 1222 dbSNP
rs1261455638 1224 dbSNP
rs1225119342 1228 dbSNP
rs971192435 1237 dbSNP
rs1265011298 1240 dbSNP
rs1372718409 1247 dbSNP
rs980138020 1249 dbSNP
rs879909822 1252 dbSNP
rs558348123 1253 dbSNP
rs1029844391 1254 dbSNP
rs1219130529 1259 dbSNP
rs1339702782 1261 dbSNP
rs576533267 1262 dbSNP
rs1216284052 1263 dbSNP
rs962405986 1264 dbSNP
rs753565511 1265 dbSNP
rs1317118689 1275 dbSNP
rs1292573712 1281 dbSNP
rs1455995288 1285 dbSNP
rs987925751 1287 dbSNP
rs1196526625 1288 dbSNP
rs1172080624 1289 dbSNP
rs973647164 1294 dbSNP
rs920868550 1304 dbSNP
rs967768989 1306 dbSNP
rs543117836 1307 dbSNP
rs761078123 1308 dbSNP
rs1208282295 1309 dbSNP
rs1481681194 1312 dbSNP
rs1258767001 1317 dbSNP
rs1198048374 1318 dbSNP
rs1199774205 1325 dbSNP
rs983649340 1330 dbSNP
rs112567033 1338 dbSNP
rs979750978 1340 dbSNP
rs1331473227 1341 dbSNP
rs911940792 1345 dbSNP
rs1477053823 1349 dbSNP
rs926581707 1351 dbSNP
rs937935552 1352 dbSNP
rs561406477 1353 dbSNP
rs1465493445 1357 dbSNP
rs1039412036 1359 dbSNP
rs1398749763 1363 dbSNP
rs900501910 1376 dbSNP
rs936028723 1377 dbSNP
rs887098250 1379 dbSNP
rs1054288663 1383 dbSNP
rs573342101 1384 dbSNP
rs1322416009 1388 dbSNP
rs1347632097 1394 dbSNP
rs1456489695 1395 dbSNP
rs941407311 1396 dbSNP
rs531317348 1401 dbSNP
rs1202081143 1406 dbSNP
rs1345516502 1407 dbSNP
rs766246396 1408 dbSNP
rs202011581 1410 dbSNP
rs1278844200 1413 dbSNP
rs559421419 1417 dbSNP
rs879197009 1423 dbSNP
rs139460230 1425 dbSNP
rs1355409867 1426 dbSNP
rs551357523 1428 dbSNP
rs1024147298 1429 dbSNP
rs1336763005 1430 dbSNP
rs550717860 1431 dbSNP
rs569296164 1436 dbSNP
rs563499862 1437 dbSNP
rs1158270712 1439 dbSNP
rs530681534 1441 dbSNP
rs968116148 1444 dbSNP
rs77352181 1445 dbSNP
rs1033316510 1452 dbSNP
rs1218881612 1453 dbSNP
rs1442969574 1455 dbSNP
rs113233543 1456 dbSNP
rs745654152 1461 dbSNP
rs1027877801 1462 dbSNP
rs950962679 1464 dbSNP
rs1370591865 1467 dbSNP
rs983986066 1470 dbSNP
rs771956622 1475 dbSNP
rs780050298 1476 dbSNP
rs1341917342 1478 dbSNP
rs1402318631 1480 dbSNP
rs1402000601 1482 dbSNP
rs974837951 1483 dbSNP
rs950612971 1487 dbSNP
rs983267197 1491 dbSNP
rs1387274053 1493 dbSNP
rs1163911904 1495 dbSNP
rs922050404 1503 dbSNP
rs1367874803 1508 dbSNP
rs1185320710 1512 dbSNP
rs908583032 1512 dbSNP
rs935974903 1514 dbSNP
rs535882635 1515 dbSNP
rs1291511398 1517 dbSNP
rs1209977095 1524 dbSNP
rs1355031337 1525 dbSNP
rs1282985488 1527 dbSNP
rs1220983103 1533 dbSNP
rs1278000980 1542 dbSNP
rs1398109838 1542 dbSNP
rs1398469243 1546 dbSNP
rs1054404550 1547 dbSNP
rs913114224 1548 dbSNP
rs932870904 1552 dbSNP
rs1162764939 1553 dbSNP
rs1051374253 1555 dbSNP
rs1478775149 1556 dbSNP
rs1192670254 1562 dbSNP
rs1476711522 1568 dbSNP
rs1243757874 1573 dbSNP
rs945995044 1575 dbSNP
rs1046096519 1576 dbSNP
rs1242510226 1577 dbSNP
rs758708195 1581 dbSNP
rs144152763 1582 dbSNP
rs1055538201 1586 dbSNP
rs565902969 1587 dbSNP
rs1258840527 1589 dbSNP
rs1443393050 1590 dbSNP
rs1217244788 1604 dbSNP
rs898259219 1606 dbSNP
rs1370172174 1612 dbSNP
rs1275702504 1615 dbSNP
rs1187269908 1618 dbSNP
rs779265611 1621 dbSNP
rs1236033499 1622 dbSNP
rs995144687 1624 dbSNP
rs1441169092 1625 dbSNP
rs759288513 1625 dbSNP
rs773534673 1625 dbSNP
rs1158840839 1626 dbSNP
rs1169868906 1627 dbSNP
rs1401016648 1627 dbSNP
rs1426982463 1627 dbSNP
rs71174396 1627 dbSNP
rs752572159 1627 dbSNP
rs759022863 1627 dbSNP
rs766863957 1627 dbSNP
rs74929181 1628 dbSNP
rs1000586513 1630 dbSNP
rs1417296768 1630 dbSNP
rs1477512552 1632 dbSNP
rs60844215 1632 dbSNP
rs1402820755 1633 dbSNP
rs145088809 1633 dbSNP
rs1395298090 1636 dbSNP
rs1012386460 1637 dbSNP
rs1337240223 1639 dbSNP
rs1449320475 1641 dbSNP
rs1023384863 1642 dbSNP
rs1025317155 1644 dbSNP
rs1061826 1645 dbSNP
rs1238011726 1646 dbSNP
rs1376211806 1647 dbSNP
rs1005126376 1648 dbSNP
rs1019653247 1649 dbSNP
rs966225361 1650 dbSNP
rs192055415 1651 dbSNP
rs1254554080 1652 dbSNP
rs1392939636 1653 dbSNP
rs184818852 1654 dbSNP
rs1178919658 1659 dbSNP
rs537238852 1659 dbSNP
rs8730 1660 dbSNP
rs1237158737 1663 dbSNP
rs1437353499 1664 dbSNP
rs1174921418 1665 dbSNP
rs1484543468 1666 dbSNP
rs533769530 1667 dbSNP
rs950693035 1669 dbSNP
rs990078133 1670 dbSNP
rs913228782 1673 dbSNP
rs1288475637 1679 dbSNP
rs1170698265 1684 dbSNP
rs1061828 1688 dbSNP
rs1353198046 1689 dbSNP
rs540690590 1690 dbSNP
rs1230036385 1692 dbSNP
rs1045631037 1693 dbSNP
rs1303349022 1696 dbSNP
rs928570321 1713 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaggugacgauGUUGGAGGGUcu 5'
                     |: ||||||:  
Target 5' --------ggcCGCCCUCCCGuc 3'
1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000316097.8 | 3UTR | GGCCGCCCUCCCGUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
HNSC 0.966 0.08 1.000 0.5 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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