pre-miRNA Information
pre-miRNA hsa-mir-4271   
Genomic Coordinates chr3: 49274120 - 49274186
Description Homo sapiens miR-4271 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4271
Sequence 39| GGGGGAAGAAAAGGUGGGG |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30481495 1 COSMIC
COSN31532060 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760829741 1 dbSNP
rs1277951968 2 dbSNP
rs189148716 3 dbSNP
rs757021935 4 dbSNP
rs1285201145 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ALPK3   
Synonyms MAK, MIDORI
Description alpha kinase 3
Transcript NM_020778   
Expression
Putative miRNA Targets on ALPK3
3'UTR of ALPK3
(miRNA target sites are highlighted)
>ALPK3|NM_020778|3'UTR
   1 CCTCCGCAGAGGCTGGGGGCCTCCACCCAGCAGCAGACCAACCAGGAAGCAGCTTGAACTGGATGGAGACTTTCCAAATA
  81 TGGAACTAACTGGAGAAGGTGCACGAAGGAGACACCACTTGGGGACCTCTCTGAGCAGGCTCTCGTGAATCAGCTCGTCA
 161 TCAGATGGCTTTGGTGCATGGCACATAGCCCACTGGCCTCTTCTGGTGCCACTGTCACCCAGGGCTCCCGGGCCTCAAGC
 241 AGTCCCCACCTCCAAGTGCCTGGCAACCTAGGCCCTCCTTGAAGTTTACACTTTGCCACTGCTGGAGGCTCCCCTGAGTC
 321 CTCTGCATGAGTTCTGCACCCCAAGCCCTTGCCCCAGCCCAGTCCAGCAGCAGATGTTACAATCTGAGTGAGGACATGCA
 401 GGCCAACTTTTACCCTCCTGCATTTGCCTGGCCCTGATCTCGCCTGTCCTCAGGGATCCAGACTTCCTCTGCTGGTCTGG
 481 CCTGGTGACTCTCAGGGTATCTTCTCCTTCCAGCTACTTTCGCTCACTGATCTCAGCTTATCCTGCAACTAACCATCCTT
 561 GAGCCCAGATGGGGCTCAGGGCCCTTCCAGAGCCTGTCATGTCCTTGTGCAGTGGCCTTTGATGTGTGTTCACGCTCTTC
 641 CCCCTTCACTCACTCGCCTGCTTCCCATGCTCCCTTGTACCCCCTCGCCACATCCCTGTCTTGGGGCCCAGCTGCAGCCT
 721 GCTGCCTGCCCTTCATGGCTCTGCACATGGCCCTTTGCTTGAGGGCTCCCCACTCCCTGCCCACCAATACCCAGGTGAGG
 801 AACAGACCCTCTGGCCTCTCACCCCACTTCAGTGCTCTCTTCCCCAACTTCTCTCGGGCTCTTTGCTCATGAGGTGAGAG
 881 CTGGTGTGAGGGTTGTGTCAGCAGCTGTAGCCAGAGAGAGGTGTTGACTCTGAGAGACCTTGCACTCCATACTGAAAGGA
 961 GGTGGGGTCACAGTGAATTTCACATCCCCTCTCAACCAGGAGTGGAGGGCTAGGTCCCTTCCCCATGGGGAGTACACTTG
1041 GGTGTTCTAGGAGGGATGCAGTCTATCCATGCACTTGGGTGGAGGGGAGTCTCTGTGCCTGGGAATTAGGACCCCTGCTC
1121 CAACCATCGCTCTTGATCCTGGGGCCCCAGCTCTGGGTCCTCATGTATGGGCTCCCAAGGACCCAGCAGCCTGGATCCTT
1201 CCAGAGCATCCCTCCTGGAGGCCTGGGATGGGGTAGGTCTGCAGCTAGCCTACTCCCTTTGGAATGCAATAAAGGCAGCA
1281 TTGTGTGCCCTGCTTGCCCTCATCTGGTGTGGTTGGAGGTCTGTGGAGTCAAGGTCCCCCTCTCCCAGGCAGGCTCTCTG
1361 AGGGCATTCTGTAGTCCCAGGCCCACTGGAAAAATGAATCTATATTTTGGTTCCTGGACCGAAGTTCAGTCGCAGCCTTC
1441 TGTGGCCACAGAAAGACAGCTTGTGCTGCTTGCACAACTGAGCTGCTGGTGTGTACCCCTTAGCAGGGTGTCTGGGGACT
1521 TACGCCTTTGGAATTGCTCTTCATTCAGAAGAGGAACACAAAGGAAGCCACCCAGGAAGGAAGCACAGAGCTGGGGGCTC
1601 TGGAAACGCCCTGTGTCTCTGGCTACAGCAAGACCAGCCCAGGAGCCCACCAGCACCTGCCTCTCAGCTACTTGCTGACC
1681 ATTTCCTGCTTCTCAAGCTGCAGAGAAGCTTTTCATTCCCACCCCCACCCGGAACCTCCCCTTGCCTAACATTTCCCCTC
1761 TATGGTAACATCTCTGACTTCTCTACCTCCTCTGTGCTCAGGTGACTCCACATCTTCTGCCCCAGTGTGTCCCCACCTCT
1841 CCCAGCCTGTATACCCAGATTACTTTGGTGAACTGAGAGCTGGAGTACTGTTCATTCATTTATTCATTCACCCACTCATT
1921 CAGCAGACATATACTGAGTGCTACTTTATGCCAGACCCTGGGCTGGCAGCTGTTTGGAGGCAAAGATGTATGAGGCCATC
2001 TCAGGAGAGACTACTTGTTAGGATTCTTGAGTTTTGACCAACAGAAATGAACTTGGACCAACTTAAGCAAGGAAAAAGCG
2081 TTCATGGGAAGGATGCTGGGATAGCTCACAAAACCAAAAGAATAGCTGAACAATTAATTGGCCCTGGGAAGGGTGGGAGC
2161 TGGGGCAACTACGAGGCTTGCCTCCCAGGAGCTGCTGCGGTTGGCAGATCAACACCAACTTGCCATTGGTTCTAGTGGGT
2241 CCCCTTCCACTCAAGATTCAAATTCCAAGTGAAAGAACCTGGCCTGGAGCTCAGGGCTTCATAGAGTGGGAGGGGGGCAG
2321 TCTTCCAAAAGATGCGGACTCTTGCCACATGGAATGGTGGAGTACGGAAGGGTGGAAAGGGTTTGGTAGGTAAACCCTGA
2401 AGATGCTTCTAACACACGTGCTGTTCTCCCATCTCACGTATGACGACTCTCCCACAGGTAACCAAAACCACATTTCTCTC
2481 TGCTTAGGGAATTCAAGATCATATCTAACTTCGAATTCCAGGGGTAATGACACGGCTTCTATTCTCCAAAGTCCAGTGTC
2561 ATTAGGGATAATCTCCCTCTTTCAGTTTTATCACAATTCCATTTTGAAATTCTACAACCTGTAGATTAACTGGTAAAATT
2641 AACCATATTCAACCAAAATTGTATAACCCAGCAAGAATGGAAGAATGGGTAAAGTCTACAGTCCATTTCTAGAACTGGTC
2721 ATGAGAACTCATGTTTATGATGATGGACTTTTGATCTGGTGGAGGGACCCAAACCTTCAGTTCTGAAGCTCATTAGTGGT
2801 CCTACCTGTGTGACAGGCATTTACTATTGGACTGGCAGTCCCAGGACAAACTCCAGGAATCCCCCCATGTCCATCTCTAC
2881 TCCTGCCCTCTTTTACGTAGCAGCAATCATATTTTCCCTTGATAGGGTTCATCATTCTAGATACTCCGATGACTTCTTTA
2961 TAATGAGCCTGAAGTGGCCTGGTGGCTGCCTCAGCTTCCAGTTCAGTTGAATAGCTACTACGTCTTTGAGGATGTGCTCC
3041 TTGCTGGGGGACTAAACTCTCCACGCCAGCCCAGTCCCAAACCTAAACCTCGGGTATGAGAAAAGCATTGAGATCTAGCA
3121 ATAGCAGGGCCATGTCCACACTGCGTCCTATCCCTGAAGGAGAAACAGCGCCAGGTATGGTTGCCGGCTCCAAGCGCATG
3201 CTGCCTCCTGCAGGCCTGACCCAGCCTCTCGGGGTGTTGTTTCTGGTGCCATAGTTGAATTTTCAACAAACCATTTCACC
3281 ACCCTCTCAAGACAGCTGCTGCTGGTTTGTGGGTTCCTGACAAGATGAGTGAATGCCTGCCCATCAACCCGTTACTATTC
3361 TTTTAGCTGTAAAGTGAATTCTCTGGTTGGGTGCAGTATGTGAGGAGGTCACATGATGTTTATGGCATTTGAGAATTCCA
3441 TGGATATTGATGGCAGGAGAGGCATGATGGGTTAGAAAAGCAAATCCAAATCCAGAACAAGGGCCCAAAAGGGCCAAGAC
3521 AAATTACTGCCCCTCTCAGAGCCACAGGTGTAGACAGGTGAAAACACTGGACAGTGAGTGAGCTACCCACACACGACCCA
3601 CTGGTGCCTTCAGAGCCTTAGCCTGGAGCGACAGTGTACCGTTGATAATGGAACGCACTGGCCATGCCAGACTTTATGGC
3681 TAGGCGGTCAGATAACACTACGAGGGGCAGCATGGCCACCAAGTGTGCCAGGGCCAAGTGTTCAGGCTCTCCCAGAGCCC
3761 AGTGGTGAGCCAGAAGGGCATTTTGTACAAGGATAATGGTTACTTTTTGGCCAGAGCATCACTTGGCTCCAAATCCTGGG
3841 TTCCCGTATCATATTTTCTTGTCAGGACTTACCGCAAGCTATGTATGGCTCCGCGGTATGCCACCCATGGAAAGACACCT
3921 CATGCACCATTGACCTGCCAGGTCACGTGGCCTGATGGCAGCGTCGGCTGCACAAAAGACTTTCCCAGCTGCAATGCCTT
4001 CGCCTGCTCTAGGCCCACCCCAAAGCTGGCAGTCTTCTAGGTCAGTTGGTAAATGGGTTAGAACAAGATGCCCCAAAGTG
4081 GCATAAATTGCATGGAATTAGGCCTTAGTGGCGAGGGATTCGACATACAGTCATTTGTCCTACATTGTGAAGGAAACATT
4161 CTGACCTCAAACAGATCCCTCAACCCCAGAACTTTATAGAAGGGGCAGACCTTGGCATTTTCACATGATTTATCTCCCAC
4241 TCTGATTCACATATGTTTGACCAAGGCACTGGGCAGCTGCCAATTTCCCGTCCCTTCTGTAGTCCCAGATGAATGGATAC
4321 AGACCTCTTTGGGGAAGGCTGCAAGGAAGGTTCACAACATGCATCTAAGTGTTAAAATAAGTTTTTCCTTCAAAAATACA
4401 TTTGACTTCCTCTCCATTTAAGGTCTGGAAATCAAGTGGGAGATCTTGACTTTACCTTGGCACTTGAGACAGAACTGTTG
4481 GCCCAGAAGTCTTTAGTTAAGGTCATTACTAGGCCATATCTTAGGGGCGTCTGGCCTTTTTCATTCCTGGGACCCACAGC
4561 TCGAGGTCTGGTTTCCATGCCCTATCCCTTACGATGAGCGCCCTATTTTGTTCCTTCTGTCTATCTCTGTTGCTGAGATC
4641 AGGGAGCCCACGTTCACAGCAGCTCTTTCAAGCAGCCTCCCAGGCCTAGAGAGGAAAATCAGCAGAGCCTCGTGAATGTA
4721 TTTCTCGTGGCAAGAAGGGAGCTCATCTTCTGGGTCCTGCCAGAGGGCAGTGAGGGGGTTGATGGGCTGGGTGCATGCCA
4801 GGGACCCAATCAAGCATTTTTATCTTCTGAAATCTTTGAATTCCTGCCTTTCTTGGATGTTTGGTCTTTTGATATAATTT
4881 AGCATGGGCCAACATTTGGTCCAGATTTGTATTAGCCAAGCCCTCCTAAAATAGTAATAACAGTATCTGGCGATTTGAGC
4961 TTTTACGTAGAATGTAGAATCTCTGGTGAGTGAACATATCAATAAAGACAACCTGAACCAAAATTAAAAAAAAAAAAAAA
5041 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggGGUGGA------AAAGAAGGGGg 5'
            ||||:|      | |||||||| 
Target 5' ccCCACTTCAGTGCTCTCTTCCCCa 3'
822 - 846 155.00 -23.50
2
miRNA  3' ggGGUG-GAAAAGAAGGGGg 5'
            :||| |   |||||||| 
Target 5' gtTCACGC---TCTTCCCCc 3'
628 - 644 146.00 -20.00
3
miRNA  3' gggguggaaaaGAAGGGGg 5'
                     ||||||| 
Target 5' gggctaggtccCTTCCCCa 3'
1007 - 1025 140.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
384676 6 ClinVar
1177817 255 ClinVar