pre-miRNA Information | |
---|---|
pre-miRNA | hsa-mir-4271 |
Genomic Coordinates | chr3: 49274120 - 49274186 |
Description | Homo sapiens miR-4271 stem-loop |
Comment | None |
RNA Secondary Structure | ![]() |
Mature miRNA Information | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mature miRNA | hsa-miR-4271 | ||||||||||||||||||
Sequence | 39| GGGGGAAGAAAAGGUGGGG |57 | ||||||||||||||||||
Evidence | Experimental | ||||||||||||||||||
Experiments | SOLiD | DRVs in miRNA |
|
||||||||||||||||
SNPs in miRNA |
|
||||||||||||||||||
Putative Targets |
miRNA Expression profile | |
---|---|
Human miRNA Tissue Atlas | |
Circulating MicroRNA Expression Profiling |
Gene Information | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Gene Symbol | ALPK3 | ||||||||||||||||||||
Synonyms | MAK, MIDORI | ||||||||||||||||||||
Description | alpha kinase 3 | ||||||||||||||||||||
Transcript | NM_020778 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on ALPK3 | |||||||||||||||||||||
3'UTR of ALPK3 (miRNA target sites are highlighted) |
>ALPK3|NM_020778|3'UTR 1 CCTCCGCAGAGGCTGGGGGCCTCCACCCAGCAGCAGACCAACCAGGAAGCAGCTTGAACTGGATGGAGACTTTCCAAATA 81 TGGAACTAACTGGAGAAGGTGCACGAAGGAGACACCACTTGGGGACCTCTCTGAGCAGGCTCTCGTGAATCAGCTCGTCA 161 TCAGATGGCTTTGGTGCATGGCACATAGCCCACTGGCCTCTTCTGGTGCCACTGTCACCCAGGGCTCCCGGGCCTCAAGC 241 AGTCCCCACCTCCAAGTGCCTGGCAACCTAGGCCCTCCTTGAAGTTTACACTTTGCCACTGCTGGAGGCTCCCCTGAGTC 321 CTCTGCATGAGTTCTGCACCCCAAGCCCTTGCCCCAGCCCAGTCCAGCAGCAGATGTTACAATCTGAGTGAGGACATGCA 401 GGCCAACTTTTACCCTCCTGCATTTGCCTGGCCCTGATCTCGCCTGTCCTCAGGGATCCAGACTTCCTCTGCTGGTCTGG 481 CCTGGTGACTCTCAGGGTATCTTCTCCTTCCAGCTACTTTCGCTCACTGATCTCAGCTTATCCTGCAACTAACCATCCTT 561 GAGCCCAGATGGGGCTCAGGGCCCTTCCAGAGCCTGTCATGTCCTTGTGCAGTGGCCTTTGATGTGTGTTCACGCTCTTC 641 CCCCTTCACTCACTCGCCTGCTTCCCATGCTCCCTTGTACCCCCTCGCCACATCCCTGTCTTGGGGCCCAGCTGCAGCCT 721 GCTGCCTGCCCTTCATGGCTCTGCACATGGCCCTTTGCTTGAGGGCTCCCCACTCCCTGCCCACCAATACCCAGGTGAGG 801 AACAGACCCTCTGGCCTCTCACCCCACTTCAGTGCTCTCTTCCCCAACTTCTCTCGGGCTCTTTGCTCATGAGGTGAGAG 881 CTGGTGTGAGGGTTGTGTCAGCAGCTGTAGCCAGAGAGAGGTGTTGACTCTGAGAGACCTTGCACTCCATACTGAAAGGA 961 GGTGGGGTCACAGTGAATTTCACATCCCCTCTCAACCAGGAGTGGAGGGCTAGGTCCCTTCCCCATGGGGAGTACACTTG 1041 GGTGTTCTAGGAGGGATGCAGTCTATCCATGCACTTGGGTGGAGGGGAGTCTCTGTGCCTGGGAATTAGGACCCCTGCTC 1121 CAACCATCGCTCTTGATCCTGGGGCCCCAGCTCTGGGTCCTCATGTATGGGCTCCCAAGGACCCAGCAGCCTGGATCCTT 1201 CCAGAGCATCCCTCCTGGAGGCCTGGGATGGGGTAGGTCTGCAGCTAGCCTACTCCCTTTGGAATGCAATAAAGGCAGCA 1281 TTGTGTGCCCTGCTTGCCCTCATCTGGTGTGGTTGGAGGTCTGTGGAGTCAAGGTCCCCCTCTCCCAGGCAGGCTCTCTG 1361 AGGGCATTCTGTAGTCCCAGGCCCACTGGAAAAATGAATCTATATTTTGGTTCCTGGACCGAAGTTCAGTCGCAGCCTTC 1441 TGTGGCCACAGAAAGACAGCTTGTGCTGCTTGCACAACTGAGCTGCTGGTGTGTACCCCTTAGCAGGGTGTCTGGGGACT 1521 TACGCCTTTGGAATTGCTCTTCATTCAGAAGAGGAACACAAAGGAAGCCACCCAGGAAGGAAGCACAGAGCTGGGGGCTC 1601 TGGAAACGCCCTGTGTCTCTGGCTACAGCAAGACCAGCCCAGGAGCCCACCAGCACCTGCCTCTCAGCTACTTGCTGACC 1681 ATTTCCTGCTTCTCAAGCTGCAGAGAAGCTTTTCATTCCCACCCCCACCCGGAACCTCCCCTTGCCTAACATTTCCCCTC 1761 TATGGTAACATCTCTGACTTCTCTACCTCCTCTGTGCTCAGGTGACTCCACATCTTCTGCCCCAGTGTGTCCCCACCTCT 1841 CCCAGCCTGTATACCCAGATTACTTTGGTGAACTGAGAGCTGGAGTACTGTTCATTCATTTATTCATTCACCCACTCATT 1921 CAGCAGACATATACTGAGTGCTACTTTATGCCAGACCCTGGGCTGGCAGCTGTTTGGAGGCAAAGATGTATGAGGCCATC 2001 TCAGGAGAGACTACTTGTTAGGATTCTTGAGTTTTGACCAACAGAAATGAACTTGGACCAACTTAAGCAAGGAAAAAGCG 2081 TTCATGGGAAGGATGCTGGGATAGCTCACAAAACCAAAAGAATAGCTGAACAATTAATTGGCCCTGGGAAGGGTGGGAGC 2161 TGGGGCAACTACGAGGCTTGCCTCCCAGGAGCTGCTGCGGTTGGCAGATCAACACCAACTTGCCATTGGTTCTAGTGGGT 2241 CCCCTTCCACTCAAGATTCAAATTCCAAGTGAAAGAACCTGGCCTGGAGCTCAGGGCTTCATAGAGTGGGAGGGGGGCAG 2321 TCTTCCAAAAGATGCGGACTCTTGCCACATGGAATGGTGGAGTACGGAAGGGTGGAAAGGGTTTGGTAGGTAAACCCTGA 2401 AGATGCTTCTAACACACGTGCTGTTCTCCCATCTCACGTATGACGACTCTCCCACAGGTAACCAAAACCACATTTCTCTC 2481 TGCTTAGGGAATTCAAGATCATATCTAACTTCGAATTCCAGGGGTAATGACACGGCTTCTATTCTCCAAAGTCCAGTGTC 2561 ATTAGGGATAATCTCCCTCTTTCAGTTTTATCACAATTCCATTTTGAAATTCTACAACCTGTAGATTAACTGGTAAAATT 2641 AACCATATTCAACCAAAATTGTATAACCCAGCAAGAATGGAAGAATGGGTAAAGTCTACAGTCCATTTCTAGAACTGGTC 2721 ATGAGAACTCATGTTTATGATGATGGACTTTTGATCTGGTGGAGGGACCCAAACCTTCAGTTCTGAAGCTCATTAGTGGT 2801 CCTACCTGTGTGACAGGCATTTACTATTGGACTGGCAGTCCCAGGACAAACTCCAGGAATCCCCCCATGTCCATCTCTAC 2881 TCCTGCCCTCTTTTACGTAGCAGCAATCATATTTTCCCTTGATAGGGTTCATCATTCTAGATACTCCGATGACTTCTTTA 2961 TAATGAGCCTGAAGTGGCCTGGTGGCTGCCTCAGCTTCCAGTTCAGTTGAATAGCTACTACGTCTTTGAGGATGTGCTCC 3041 TTGCTGGGGGACTAAACTCTCCACGCCAGCCCAGTCCCAAACCTAAACCTCGGGTATGAGAAAAGCATTGAGATCTAGCA 3121 ATAGCAGGGCCATGTCCACACTGCGTCCTATCCCTGAAGGAGAAACAGCGCCAGGTATGGTTGCCGGCTCCAAGCGCATG 3201 CTGCCTCCTGCAGGCCTGACCCAGCCTCTCGGGGTGTTGTTTCTGGTGCCATAGTTGAATTTTCAACAAACCATTTCACC 3281 ACCCTCTCAAGACAGCTGCTGCTGGTTTGTGGGTTCCTGACAAGATGAGTGAATGCCTGCCCATCAACCCGTTACTATTC 3361 TTTTAGCTGTAAAGTGAATTCTCTGGTTGGGTGCAGTATGTGAGGAGGTCACATGATGTTTATGGCATTTGAGAATTCCA 3441 TGGATATTGATGGCAGGAGAGGCATGATGGGTTAGAAAAGCAAATCCAAATCCAGAACAAGGGCCCAAAAGGGCCAAGAC 3521 AAATTACTGCCCCTCTCAGAGCCACAGGTGTAGACAGGTGAAAACACTGGACAGTGAGTGAGCTACCCACACACGACCCA 3601 CTGGTGCCTTCAGAGCCTTAGCCTGGAGCGACAGTGTACCGTTGATAATGGAACGCACTGGCCATGCCAGACTTTATGGC 3681 TAGGCGGTCAGATAACACTACGAGGGGCAGCATGGCCACCAAGTGTGCCAGGGCCAAGTGTTCAGGCTCTCCCAGAGCCC 3761 AGTGGTGAGCCAGAAGGGCATTTTGTACAAGGATAATGGTTACTTTTTGGCCAGAGCATCACTTGGCTCCAAATCCTGGG 3841 TTCCCGTATCATATTTTCTTGTCAGGACTTACCGCAAGCTATGTATGGCTCCGCGGTATGCCACCCATGGAAAGACACCT 3921 CATGCACCATTGACCTGCCAGGTCACGTGGCCTGATGGCAGCGTCGGCTGCACAAAAGACTTTCCCAGCTGCAATGCCTT 4001 CGCCTGCTCTAGGCCCACCCCAAAGCTGGCAGTCTTCTAGGTCAGTTGGTAAATGGGTTAGAACAAGATGCCCCAAAGTG 4081 GCATAAATTGCATGGAATTAGGCCTTAGTGGCGAGGGATTCGACATACAGTCATTTGTCCTACATTGTGAAGGAAACATT 4161 CTGACCTCAAACAGATCCCTCAACCCCAGAACTTTATAGAAGGGGCAGACCTTGGCATTTTCACATGATTTATCTCCCAC 4241 TCTGATTCACATATGTTTGACCAAGGCACTGGGCAGCTGCCAATTTCCCGTCCCTTCTGTAGTCCCAGATGAATGGATAC 4321 AGACCTCTTTGGGGAAGGCTGCAAGGAAGGTTCACAACATGCATCTAAGTGTTAAAATAAGTTTTTCCTTCAAAAATACA 4401 TTTGACTTCCTCTCCATTTAAGGTCTGGAAATCAAGTGGGAGATCTTGACTTTACCTTGGCACTTGAGACAGAACTGTTG 4481 GCCCAGAAGTCTTTAGTTAAGGTCATTACTAGGCCATATCTTAGGGGCGTCTGGCCTTTTTCATTCCTGGGACCCACAGC 4561 TCGAGGTCTGGTTTCCATGCCCTATCCCTTACGATGAGCGCCCTATTTTGTTCCTTCTGTCTATCTCTGTTGCTGAGATC 4641 AGGGAGCCCACGTTCACAGCAGCTCTTTCAAGCAGCCTCCCAGGCCTAGAGAGGAAAATCAGCAGAGCCTCGTGAATGTA 4721 TTTCTCGTGGCAAGAAGGGAGCTCATCTTCTGGGTCCTGCCAGAGGGCAGTGAGGGGGTTGATGGGCTGGGTGCATGCCA 4801 GGGACCCAATCAAGCATTTTTATCTTCTGAAATCTTTGAATTCCTGCCTTTCTTGGATGTTTGGTCTTTTGATATAATTT 4881 AGCATGGGCCAACATTTGGTCCAGATTTGTATTAGCCAAGCCCTCCTAAAATAGTAATAACAGTATCTGGCGATTTGAGC 4961 TTTTACGTAGAATGTAGAATCTCTGGTGAGTGAACATATCAATAAAGACAACCTGAACCAAAATTAAAAAAAAAAAAAAA 5041 AAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
||||||||||||||||||||
miRNA-target interactions (Predicted by miRanda) |
|
||||||||||||||||||||
DRVs in gene 3'UTRs |