miRTarBase - #MIRT491117


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pre-miRNA Information
pre-miRNA hsa-mir-7849   
Genomic Coordinates chr4: 146408583 - 146408688
Description Homo sapiens miR-7849 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7849-3p
Sequence 64| GACAAUUGUUGAUCUUGGGCCU |85
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1386078731 3 dbSNP
rs144001291 10 dbSNP
rs1334425573 16 dbSNP
rs557644637 20 dbSNP
Putative Targets

Gene Information
Gene Symbol TMTC1   
Synonyms ARG99, OLF, TMTC1A
Description transmembrane and tetratricopeptide repeat containing 1
Transcript NM_175861   
Expression
Putative miRNA Targets on TMTC1
3'UTR of TMTC1
(miRNA target sites are highlighted)		 
>TMTC1|NM_175861|3'UTR
   1 CACCACCGTCTGACCCAACCTCATAGGATAATGTGGTGCCTCTGAAAGGGGAGTGATGGAAGCCTTGCTTTCACATCAGC
  81 AGGGGCACAACTAATGAGATTTTCTCTCATTCCGAGTTCAGGGTGACACATTTTGGGACATCTGCTGGTAGCCCAGTGCT
 161 GAAGGACTTGCTTTTCCATGAAGAAGACGAAAACAGCAAACAAGGGCAAGAAGGTCTGAGAGGGAAGGAGAATGACATTT
 241 ACACATTTTACAGATTTTTGTTTGGTTTAACTCCAGATTTCTCTTGATATATCTCTGTGCTTTTGAGACCTGGAGATCTA
 321 ATTCTGTTTAGACATTTTTTGTCCCAGAAATACAGAAGCTTGAAATGCTATGAAGGCAGAGCTTCTATTCTTTATGGGAT
 401 GAAATATTTCAAAAGAGGATAAATCCTCTGTGGTAAGCCATTTGGAAAATCCTACCAAGAATTGGCTTATTTAATTTTCC
 481 AGAACCAGGAATGAGTATCTAATAGCTTTTGTAGAACCTTCCAGAATATGTGGGGAAAAAGGGCTATTGCTAAGTGAGCT
 561 TTATCTAATATCCTCCTAAGAGTTTTACTAGTGCTTTTTTGAGGAATTACAGGGAAGCTCCTGGAATTGTACATGGATAT
 641 CTTTATCCCTAGGGGGAAATCAAGGAGCTGGGCACCCCTAATTCTTTATGGAAGTGTTTAAAACTATTTTAATTTTATTA
 721 CAAGTATTACTAGAGTGGTGGTTCTACTCTAAGATTTCAAAAGTGCATTTAAAATCATACATGTTCCCGCCTGCAAATAT
 801 ATTGTTATTTTGGTGGAGAAAAAAATAGTATATTCTACATAAAAAATTAAAGATATTAACTAAGAGAAATGTCCTACTTT
 881 ATTATCTTAATGTTCAGACATCATGAGATTTATTATTTTTTTGAAAAATATATTGAACCATTGAGGAACCTTTATGATGT
 961 ATCACAGAAATCTTCATAGATTCTAACTAGATGGAAAAAGAGCTCTATTTATTTGTGTTCCTAGGCTTAATGAGAATTCT
1041 GGGCTTAGAACATCAACGATTAATACCCAGAATTCTTTGTTTTGAGAATATTATGGAGAATGCTCTAAAAATCTAGGGTA
1121 AAGATCTAAATTCAAATTTTAAATATATATTTATATTTAAGAAATAGGAAAGGCAAAGTTGAACTCACAATTTGACATTT
1201 ATTTTTAGTGTTATTTATTTCATAACTTATAAAATATTTAATATATACATACACACTCTTCTTTTTTCTCTGTACAAAGT
1281 GGTTTTAATATCAGCTTTCAAAACTGATCTTATAAAATGTAAATCTAAATTGTAAAATAGTTAAGTTTTAACAGTCCCTC
1361 CCAAACTTTGTGTTGATTATTCACTTGCTAAAGAGATGTGAGGAATCAGCCTTCAGTTTTTTGGCAGTAGTATATTTTGG
1441 AAGTGAAGAAATTGGAACACCTGTTTCTAATTTGGTCTTCATCATTAGAGACAAAACCAAAACACTCCAGGCAGTACTGT
1521 TTATAGTGCTGAGCCAGGTAGCACACAGACATAGTAGCCTAAAGGCTCACATAATTCGCATGCTCAGGCCAGGGCAGGGT
1601 AAAAATAGCCTTCTGCTTCTTTCAACCCAGTATCAGGAAGCACTACCCCAGTGTTATTATTTGTTTTGTCAAGGTAAGTC
1681 TAAATAAACAAGAAAAACTTCTTCGGAAGGCATGGCGAAGGGAGTATTTTAAATGAAAATGATTACAGAATTTGAATTAG
1761 CATGCATCTCTTTGTGTGCAACAGTAATCCAAGAATGTATATGTTACCACTACAACCATTTGTTTCTAATAGTTTTTTCA
1841 TGTTATATAACATAAATGTATCCACAACCTTAATTAAGAACTATTCTTCCCCCAAAATCATAGTCCTAGTGTCAAGAAAC
1921 ATACTCCAGTGTTTATTGTAAAATAACAACCACACCCTCAAATTGAAAAAAGTGAATGTCTAGGACTTTATTACAACTTT
2001 TCAGAATAATCTGTAATGAAAACTCATGCTTAAAAATTTAATGGAAAAGACTGAGCCCCAAATTTTGAATAGTGATTACG
2081 CCTTACTTGAAGTGCTAATAAAGGTAGGAGAGTACATTTGTTGGAATAACAGAAATGGTGATTTCAGCCTAAAAGTTTCT
2161 GAGGGTAAAGGATCACATGACCTTCAGGAAACTCTCTGCCTCCTGTAGGTGCTTTCCTATCTCCCCCATCCTTCCCTACC
2241 CCTTTTCCCTTTTCCTTCCTCTCTTTTTCTCTCACTGTCACTCTGTCTACACACACTGGCATCTTTTGAACACTAAAAGT
2321 AAGCACTGTTTTTTAAAAAAGTAATTATTTGTTGGATCAGATACTTTTATCCCAAGTGAATACCTTCACTGAGATGTGGC
2401 CAATGCAATAGTTTCACAGTAAAAACAGTGCCTATAAGAAAATAGATCACATACTATTTTTCAATGATATTAAGTGTATT
2481 TTGTAACTATTTTCATTTGGTCCTTGTAACATGAAATAATACATGGAACTTACCTTTATAATAAAAATGGAGTGCCCTGG
2561 TTCATCATAGAGGTGCATCTAGTTTGCCCTTAATGGAAGTATACTTGCTGTGTGGATTGATAGCACCTTCTTGAAATGGA
2641 GGAGCTCAGCTGGCCTCATGGATGTGCAATTTTTGCAGTCCCACAGGGCCTTGCATACAGAAGCACCCCGAGCTCAGTTG
2721 AATGTCTGTTTGATTTTTTCTTATTTATTTTTTTGAGACACAGTTCCACTTTGTCTTTTTGTCACCCAGGATGGAGTTCA
2801 GTGGCACAAACATGGCTCACTGTAGCCTCGACCTCCCTGGCTGAAGGGATCCTCCCACCTCAGCCTCCCAAGTAACCGAG
2881 ACTACAGGCATATGCCAGCATGTCCAGCTAATTTTTGTATTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGG
2961 TCTCAAACTCCTGGGCTCAAGCGATCTGCCCACCTCTGCCTCCCAAAGTGCTGGGATTAAAGGCATAAGCCACCATGTCC
3041 AACTGAAATTCTTAATAATTAATAATTTTTGAGCAAGAGGTCCACACTTTCATTTTGCACTGGGTTCCCAAACAGGTCCT
3121 GGGTAGGAAGGATGGCTGAGGATAAAACAGGAGTTGCTTTGGCCTGGCTGAACATTTGAACCAATGATCAGAGTTTCATT
3201 TTATGATTGTGTTACTCTGAACAGATTTGCTATTTTTTTCCAGCTACATTTAGAGTTCCTCATGTATATATCACCCCTCT
3281 TTTTCCAGTCCATCTAACCTCTCCTTTTTTTTGTGCCTAGAATCAGTTCTCCTTGCCTTCAAAATCCCTGATAAGTGTCC
3361 ATTTCTTTTTGTATCCTTTGATGTAGAAGCCACAAGAATGGCTTTAGCAGCTTATTTTAATCTTATGAATTATTCATTCA
3441 GGATTTTTTAAATGATTCAGATGCTTTCAATCTGTTAACAGTATTTATAAAACATGTTTCAGTGATACAACATAGGTGAA
3521 CTAAACCAAAGATGCAAATGCCTTGGAGGAAAAGAAATTGTATTATAGAGAATCCTGAGATATATCCTTTTGGGTTGTTT
3601 AATTTAAAGCCTATCACAAAACAAAGAGAATTGTCGCACTTTAATTCCAACCTCCTGCAGTACTTCACAACCCTTAGCAT
3681 AAGATTCTGAAATTTGTAATAGGTGGTACCTAGTTTGATGCAGGGTTTTGCAGCAGTTGTGCGAATGCCTCTGCGCAACG
3761 GCCTTTCAGTCAGACTAAATGAGAAAATCCAAACTGTCCTATCAAAACTGACCCACAATAACTGTACTCTGAGGCGAAAC
3841 AGAGCAAATGTGGGTTTCCTGTTTTCATTGTAAAACATTCCAGGTTCTCAGATTGAAGAGCTACATTCAGCTGATAGTTG
3921 ACATCTGTTCCCTCACACGTAGTGGCTCTCAACACGGGCTGCACTTTGGAATCACCTGAGGACCTTTCGGAATCTTCGGT
4001 TGAATCATCCTGGCTGTCCTGGTGATGCTTCTTATGTGCAGCTAGGCTGGAGAACCACTACAGGGCTGACACCTGGAATG
4081 GGAGCTTGTAACTTTTACAAAATAATAGATGTTTATCATCTTTTGCAATTTTTACTTTTAAGTCTATACTAAAATGAGCC
4161 AAAGAAGTCTTAACAATGATGTATGGCACAATTGGTTGGTTGAGGCTATCATTCCATGATTACAAATAGGTGGTTATGTG
4241 GGGTGGTTTTGCACTTGTGGCAATTGGACTGCAATTTGGCCTTAAAATGACACAATTCCTCGTTCTCAGATGGAGAGGAA
4321 TTGCCTTGAAATTTGCATGTACCAGACTAAGTGCCAGTATATATATGACTGATATTTTCGTGACTCATAGAAGGTGTCCA
4401 TGGTATAGAGTTTATGCCTACATCTCTATCTTTATTTTGGGCACACATGAGCTTTTGTTAATTATTTCTTTGTACTTGTT
4481 AGAATCTGTTTTTGAAAAAAAAAAAAACTTTTGCTTTGATTTGTGGTGGATTCACCTTCTTAAAATAATAAATTTAGAGG
4561 ATATTAGGAATGACATTCAAAACAAATATAGTGAGAGGTGATTTTTTAAAAATTTTTGTTCCTGGTTTCCAAATTATGTT
4641 TACTTTGATTTGATTATATGTTGGTATCTCCCAAATATAGGTTAACTTAGCTATTTAAATGGTATCTTTTGACATTTAAA
4721 AAGAATTAAGTACCTGTCAAATCTAGCATTGAGGTTGCAGTTGAATAAGATAAAAGCTTAGGATGTCAAAAAATAATATA
4801 GAGAAATATTATAAGATTTTATGATTATTCTTGACGTTTTTGATGCAAAAGGAAAATATGCTGAATAGTTCTTCCAAAAA
4881 ATATTATTTCCCTCAATATTTTATTTGTAGCCATGTAATTTAAAGAGAACAGAAAATAACTGCAATCAAAAGTATGGTTT
4961 AATATCAATCAAAGTGGCACAACAGAATTGATAAGATCTTTATAACAATCAATTGGCTGATATTAAAATATTGATTTTAA
5041 TTGATCTTTTCAATTAAAATCTTTAGGGCCTGTAACTCATAAAATCAGCATCCACCACAATATATGGTCATTATTGGTTT
5121 GTAAGCATAGATCACCATTGACTCCTACCTGGAGAGACATGTCTATTTCTAAAAATCCAGTAGTTTCTTTGCATTCTCAG
5201 TAGTACACGTTGTATATATATATATGTAACAAATTTGGTAGTTTTCAGTATGTGTGATGTCCTTTGGGGGTTATTTATCT
5281 TGCTGGTCCATAGGAGGGGTACACTACCCCAAGAATCAAGACATCTGAGTTCTAGTTCTAGTTCTAGCTCTGCCACTGAA
5361 GAGCCACCTTACCTGGGGCAAGTTAGCCATTGTCTCCCAGTCATGTTTACCACCCATGAAAGGACTCGTCGGTTTGATGT
5441 TTCCATTAAGCTCAATGAGTAACTCTAATAGTTACTCTTGAATCTGGATTGAAAAACACCATGCATCTGATGAGATAATT
5521 CATAAATGTTGCCCCTTTTTTAAATGATACAACCCTAAAAGTGACTGAATTGCCCAAGTGCTTGAACATGGCAGAGGTAG
5601 TTACTCCTATTTTGCAGTTTGTGCACTTAAAAATTCCTACAGTGATTGTTACTTTACTGGGGAAAAAAGATGAGGTGAAA
5681 CTTCCTCCCAAGGAATTAAAATATCTGTAGAAGCCATGGCTTGCTTTTATAATGTGGAAATCATTTGATTTGCTGTAATT
5761 CACGCAGATCCCTCCTTTTGTCAGGGGGAAATGATTTGCATCATGTTCTTTTTTCATAATGCTTTTACTTCCTGTTTGGA
5841 TCAGTTGTATGTAAATGTACATTTTTGTTACTTTGGCTGTGCCCGTTAGAATTTATCTTCCATAAAGTATTTCTCCCATT
5921 GAGTCTAATGATGTATACTTTGCCTAGGTCTTTCCAAAATTAAATTTATGTAAATGTCTATTTTATATAAAATATGATTA
6001 AAATAAGTATGTCTGGTTTCAATCTCTCAAGTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uccggGUUCUA----GUUGUUAACAg 5'
               ||:|:|    ||:||:|||| 
Target 5' tgatgCAGGGTTTTGCAGCAGTTGTg 3'
 3716 - 3741 143.00 -14.10
2 
miRNA  3' uccGGGUUCUAGUU-GUUAACag 5'
             |:: | | ||| ||||||  
Target 5' gatCTTTATAACAATCAATTGgc 3'
 4995 - 5017 135.00 -5.90
3 
miRNA  3' ucCGGGUUCU----AGUUGUUA--ACAg 5'
            ||| ||||    |:||||||  ||| 
Target 5' gaGCCAAAGAAGTCTTAACAATGATGTa 3'
 4156 - 4183 134.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26551712 19 COSMIC
COSN31612392 31 COSMIC
COSN30467982 35 COSMIC
COSN31611552 37 COSMIC
COSN30146493 40 COSMIC
COSN30149258 44 COSMIC
COSN30504455 49 COSMIC
COSN31573472 57 COSMIC
COSN13389028 58 COSMIC
COSN30190703 65 COSMIC
COSN30137888 67 COSMIC
COSN30533001 72 COSMIC
COSN26563502 74 COSMIC
COSN31515376 90 COSMIC
COSN30157143 96 COSMIC
COSN30180296 108 COSMIC
COSN5264293 114 COSMIC
COSN30182940 121 COSMIC
COSN30193366 161 COSMIC
COSN511217 165 COSMIC
COSN31576723 189 COSMIC
COSN31560948 193 COSMIC
COSN9083161 483 COSMIC
COSN8708422 536 COSMIC
COSN27904361 1066 COSMIC
COSN31992746 1395 COSMIC
COSN17078555 1437 COSMIC
COSN23987362 1508 COSMIC
COSN22591940 1562 COSMIC
COSN31959586 1673 COSMIC
COSN25144825 1699 COSMIC
COSN9747881 2107 COSMIC
COSN32069251 2110 COSMIC
COSN20130023 2220 COSMIC
COSN20092550 2252 COSMIC
COSN4729181 2300 COSMIC
COSN22631820 2403 COSMIC
COSN27174247 2729 COSMIC
COSN21452155 2846 COSMIC
COSN25093252 2850 COSMIC
COSN15747967 3073 COSMIC
COSN26104035 3077 COSMIC
COSN29185920 3090 COSMIC
COSN25709811 3292 COSMIC
COSN23332088 3305 COSMIC
COSN20620631 3311 COSMIC
COSN19118696 3386 COSMIC
COSN29549853 3456 COSMIC
COSN23290473 3533 COSMIC
COSN26862630 3754 COSMIC
COSN5833474 4063 COSMIC
COSN27731329 4404 COSMIC
COSN20109422 4494 COSMIC
COSN23719583 4494 COSMIC
COSN21422449 4529 COSMIC
COSN25214518 4613 COSMIC
COSN20109420 4828 COSMIC
COSN24017487 4953 COSMIC
COSN2500884 5100 COSMIC
COSN20881183 5167 COSMIC
COSN5940575 5200 COSMIC
COSN27931529 5213 COSMIC
COSN20109418 5271 COSMIC
COSN18931481 5313 COSMIC
COSN25649244 5350 COSMIC
COSN25595168 5358 COSMIC
COSN7613943 5536 COSMIC
COSN9747880 5613 COSMIC
COSN24885081 5656 COSMIC
COSN20109417 5889 COSMIC
COSN31585936 5889 COSMIC
COSN21255029 5892 COSMIC
COSN20109416 5893 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752334093 6 dbSNP
rs77783730 7 dbSNP
rs367867815 8 dbSNP
rs766308299 12 dbSNP
rs1286962354 15 dbSNP
rs773186040 18 dbSNP
rs767279300 19 dbSNP
rs376123156 20 dbSNP
rs1472384350 23 dbSNP
rs1443464310 25 dbSNP
rs1237922479 31 dbSNP
rs372067797 32 dbSNP
rs745953248 35 dbSNP
rs941733568 42 dbSNP
rs926315859 48 dbSNP
rs1378840828 50 dbSNP
rs1455075068 51 dbSNP
rs1457363153 55 dbSNP
rs1355012307 56 dbSNP
rs553446699 68 dbSNP
rs1476713640 70 dbSNP
rs535110253 88 dbSNP
rs77122459 108 dbSNP
rs1025256116 109 dbSNP
rs976552609 113 dbSNP
rs965208405 114 dbSNP
rs1356111303 115 dbSNP
rs1237204904 116 dbSNP
rs1032509934 131 dbSNP
rs1000960194 132 dbSNP
rs1202580481 134 dbSNP
rs1241766547 138 dbSNP
rs1461273766 140 dbSNP
rs551261491 148 dbSNP
rs1190102712 155 dbSNP
rs1238326779 155 dbSNP
rs1018289774 156 dbSNP
rs1488464348 172 dbSNP
rs1252400986 174 dbSNP
rs1362887930 178 dbSNP
rs1178333857 185 dbSNP
rs1007192881 186 dbSNP
rs1008667993 188 dbSNP
rs1403748331 188 dbSNP
rs958000858 189 dbSNP
rs372405853 207 dbSNP
rs1389764676 212 dbSNP
rs999232782 215 dbSNP
rs902259154 223 dbSNP
rs1331902052 228 dbSNP
rs12581552 236 dbSNP
rs550454425 242 dbSNP
rs1013747648 244 dbSNP
rs1323445280 245 dbSNP
rs895287785 249 dbSNP
rs1199864748 253 dbSNP
rs529189343 257 dbSNP
rs1332998621 263 dbSNP
rs1037902918 270 dbSNP
rs942236606 274 dbSNP
rs753302679 275 dbSNP
rs1433428742 287 dbSNP
rs779581151 289 dbSNP
rs1386248423 291 dbSNP
rs755498755 302 dbSNP
rs1171235897 326 dbSNP
rs1333269932 330 dbSNP
rs561331478 335 dbSNP
rs1297694226 341 dbSNP
rs1391705987 344 dbSNP
rs926340687 346 dbSNP
rs1048185658 351 dbSNP
rs1281736284 357 dbSNP
rs1345331815 358 dbSNP
rs929348995 370 dbSNP
rs1219657663 376 dbSNP
rs1298321149 389 dbSNP
rs980530076 391 dbSNP
rs188217401 398 dbSNP
rs1250332517 411 dbSNP
rs1488602326 426 dbSNP
rs917583496 435 dbSNP
rs528145525 438 dbSNP
rs1266355488 440 dbSNP
rs1479963622 447 dbSNP
rs1194118587 451 dbSNP
rs150297634 461 dbSNP
rs766884611 462 dbSNP
rs1470781077 464 dbSNP
rs1369165508 466 dbSNP
rs1426759296 471 dbSNP
rs1032519818 472 dbSNP
rs964780693 474 dbSNP
rs1400923315 479 dbSNP
rs1291013491 482 dbSNP
rs911024920 490 dbSNP
rs1214572720 491 dbSNP
rs1294200895 499 dbSNP
rs985315444 500 dbSNP
rs1359598078 501 dbSNP
rs1247572184 502 dbSNP
rs1289049445 503 dbSNP
rs964224675 503 dbSNP
rs958186675 506 dbSNP
rs1217050045 508 dbSNP
rs1243698717 509 dbSNP
rs78051672 511 dbSNP
rs1251981608 513 dbSNP
rs1008304490 515 dbSNP
rs1446480638 518 dbSNP
rs751170103 519 dbSNP
rs1181061950 520 dbSNP
rs1456794906 527 dbSNP
rs1237980501 529 dbSNP
rs966392916 536 dbSNP
rs1024659271 540 dbSNP
rs1347445915 552 dbSNP
rs1384782724 555 dbSNP
rs1013317672 558 dbSNP
rs1420607997 559 dbSNP
rs894896688 560 dbSNP
rs1025559219 563 dbSNP
rs1430621183 575 dbSNP
rs1055666918 589 dbSNP
rs763991816 591 dbSNP
rs993380639 592 dbSNP
rs1454059101 610 dbSNP
rs575800171 629 dbSNP
rs563919224 632 dbSNP
rs897716273 633 dbSNP
rs1358278714 639 dbSNP
rs1254476851 647 dbSNP
rs542532267 657 dbSNP
rs1232695855 659 dbSNP
rs888024874 671 dbSNP
rs762715423 672 dbSNP
rs183467999 673 dbSNP
rs1311468743 679 dbSNP
rs1314859619 687 dbSNP
rs553383573 689 dbSNP
rs1006491939 692 dbSNP
rs551875675 692 dbSNP
rs535041777 694 dbSNP
rs756478971 694 dbSNP
rs1181814689 695 dbSNP
rs540517789 696 dbSNP
rs1242683935 700 dbSNP
rs1440523657 706 dbSNP
rs1179224558 712 dbSNP
rs1406095148 716 dbSNP
rs1337195530 720 dbSNP
rs905014375 722 dbSNP
rs1397560749 724 dbSNP
rs1177259395 731 dbSNP
rs1045253720 735 dbSNP
rs3442 737 dbSNP
rs1334083306 741 dbSNP
rs115169760 742 dbSNP
rs1442326621 751 dbSNP
rs537192744 760 dbSNP
rs1280888890 772 dbSNP
rs1040373984 776 dbSNP
rs1222937944 777 dbSNP
rs140154041 788 dbSNP
rs910646462 789 dbSNP
rs1201740765 796 dbSNP
rs1262568332 799 dbSNP
rs985693756 803 dbSNP
rs1206718129 813 dbSNP
rs769727793 816 dbSNP
rs796819379 824 dbSNP
rs977974571 825 dbSNP
rs1479730087 826 dbSNP
rs538695173 826 dbSNP
rs966635128 826 dbSNP
rs955421266 827 dbSNP
rs1330326362 832 dbSNP
rs1352388898 838 dbSNP
rs1441114599 839 dbSNP
rs534876131 841 dbSNP
rs991830840 846 dbSNP
rs1221489208 847 dbSNP
rs865924968 856 dbSNP
rs1282519670 861 dbSNP
rs759411001 867 dbSNP
rs1216388216 869 dbSNP
rs376000254 871 dbSNP
rs1025611516 878 dbSNP
rs535342020 886 dbSNP
rs1223566149 903 dbSNP
rs1271346036 908 dbSNP
rs1199154049 916 dbSNP
rs1254436055 916 dbSNP
rs959377215 939 dbSNP
rs1033474532 941 dbSNP
rs1006783713 948 dbSNP
rs1016626678 949 dbSNP
rs1416826501 954 dbSNP
rs887980468 971 dbSNP
rs1486292958 979 dbSNP
rs1006131295 989 dbSNP
rs776827994 993 dbSNP
rs4931199 1004 dbSNP
rs1346929373 1015 dbSNP
rs1402806173 1032 dbSNP
rs1302371767 1035 dbSNP
rs1326946192 1048 dbSNP
rs1229567318 1055 dbSNP
rs1352986075 1055 dbSNP
rs546153993 1057 dbSNP
rs1040319474 1058 dbSNP
rs896209017 1059 dbSNP
rs1246829790 1064 dbSNP
rs1222201433 1067 dbSNP
rs1052120139 1087 dbSNP
rs943411596 1092 dbSNP
rs1449206957 1094 dbSNP
rs1191734275 1095 dbSNP
rs889179892 1097 dbSNP
rs1054572921 1103 dbSNP
rs1163672964 1116 dbSNP
rs1338494136 1117 dbSNP
rs936094704 1134 dbSNP
rs935011817 1137 dbSNP
rs925117127 1146 dbSNP
rs977922189 1153 dbSNP
rs945241088 1180 dbSNP
rs1333219535 1181 dbSNP
rs917873037 1182 dbSNP
rs1383728128 1205 dbSNP
rs1316084158 1206 dbSNP
rs1362044045 1208 dbSNP
rs1453393969 1214 dbSNP
rs1317323598 1220 dbSNP
rs1380852311 1229 dbSNP
rs1245575823 1242 dbSNP
rs991822626 1244 dbSNP
rs1353230105 1245 dbSNP
rs12312803 1248 dbSNP
rs117323539 1254 dbSNP
rs986899022 1255 dbSNP
rs1183660625 1257 dbSNP
rs1360507218 1259 dbSNP
rs955472832 1262 dbSNP
rs1186338489 1263 dbSNP
rs539170131 1268 dbSNP
rs1455090778 1277 dbSNP
rs3937583 1280 dbSNP
rs1156607619 1285 dbSNP
rs772284204 1288 dbSNP
rs972781401 1306 dbSNP
rs148224203 1318 dbSNP
rs866400060 1322 dbSNP
rs1395551007 1324 dbSNP
rs1307933117 1332 dbSNP
rs530561529 1333 dbSNP
rs1429388669 1357 dbSNP
rs1237266757 1364 dbSNP
rs3940536 1371 dbSNP
rs748551560 1372 dbSNP
rs951907641 1390 dbSNP
rs1265607449 1408 dbSNP
rs1214619959 1410 dbSNP
rs1206174802 1415 dbSNP
rs12299179 1433 dbSNP
rs143325589 1435 dbSNP
rs993635861 1440 dbSNP
rs1199393227 1443 dbSNP
rs1292507632 1447 dbSNP
rs966260824 1460 dbSNP
rs985118151 1461 dbSNP
rs1019177731 1463 dbSNP
rs1411015050 1467 dbSNP
rs822871 1488 dbSNP
rs1403860328 1496 dbSNP
rs1444522671 1497 dbSNP
rs1283434274 1498 dbSNP
rs74572829 1500 dbSNP
rs1328861010 1508 dbSNP
rs1389926488 1510 dbSNP
rs1013402040 1512 dbSNP
rs1346487974 1522 dbSNP
rs1225767965 1529 dbSNP
rs1281855833 1530 dbSNP
rs1054879936 1531 dbSNP
rs896303709 1536 dbSNP
rs1000246340 1538 dbSNP
rs74081043 1546 dbSNP
rs1481393522 1553 dbSNP
rs1193769672 1554 dbSNP
rs1250646254 1556 dbSNP
rs1490441911 1557 dbSNP
rs1201324625 1560 dbSNP
rs577162809 1561 dbSNP
rs1042236326 1565 dbSNP
rs945232849 1571 dbSNP
rs1432583808 1575 dbSNP
rs79785168 1577 dbSNP
rs543881280 1578 dbSNP
rs1324907844 1581 dbSNP
rs11834712 1585 dbSNP
rs1407083479 1598 dbSNP
rs373272036 1609 dbSNP
rs1389175150 1610 dbSNP
rs1367512729 1619 dbSNP
rs937939972 1622 dbSNP
rs926288112 1623 dbSNP
rs984868502 1625 dbSNP
rs1043363283 1626 dbSNP
rs1466459031 1629 dbSNP
rs942957535 1631 dbSNP
rs1273383817 1636 dbSNP
rs890018318 1640 dbSNP
rs1051267056 1650 dbSNP
rs1266554079 1651 dbSNP
rs2082945 1652 dbSNP
rs1488101987 1673 dbSNP
rs1186982181 1674 dbSNP
rs1263800227 1677 dbSNP
rs934188591 1680 dbSNP
rs918749416 1693 dbSNP
rs114799589 1700 dbSNP
rs535283954 1704 dbSNP
rs567972564 1705 dbSNP
rs909884095 1710 dbSNP
rs966209683 1712 dbSNP
rs1454655416 1716 dbSNP
rs141336783 1717 dbSNP
rs1360501056 1725 dbSNP
rs1007785305 1731 dbSNP
rs1196216312 1736 dbSNP
rs534657647 1740 dbSNP
rs953760662 1759 dbSNP
rs570419939 1761 dbSNP
rs551921707 1762 dbSNP
rs1345696812 1774 dbSNP
rs1320845478 1783 dbSNP
rs999283905 1793 dbSNP
rs903265463 1797 dbSNP
rs763675954 1804 dbSNP
rs12297627 1811 dbSNP
rs1480291781 1812 dbSNP
rs1433635770 1815 dbSNP
rs896292358 1817 dbSNP
rs1056720521 1826 dbSNP
rs752500890 1832 dbSNP
rs937905352 1836 dbSNP
rs926543635 1842 dbSNP
rs1323493792 1845 dbSNP
rs1161757043 1847 dbSNP
rs193014973 1856 dbSNP
rs1402948850 1857 dbSNP
rs1457244400 1858 dbSNP
rs1168923595 1860 dbSNP
rs187979263 1864 dbSNP
rs1183855440 1871 dbSNP
rs1319271714 1878 dbSNP
rs1406109349 1883 dbSNP
rs1465348312 1887 dbSNP
rs1281996106 1903 dbSNP
rs1426101147 1906 dbSNP
rs1174462480 1907 dbSNP
rs1224116843 1909 dbSNP
rs930345964 1909 dbSNP
rs1246139158 1934 dbSNP
rs768770831 1934 dbSNP
rs1037129678 1936 dbSNP
rs1326956241 1941 dbSNP
rs941455677 1947 dbSNP
rs373860846 1949 dbSNP
rs1179182130 1955 dbSNP
rs1459003151 1960 dbSNP
rs1236156876 1966 dbSNP
rs530329707 1973 dbSNP
rs909945918 1975 dbSNP
rs1208119841 1985 dbSNP
rs1237064629 1994 dbSNP
rs1197756341 1995 dbSNP
rs146616687 1996 dbSNP
rs1280280891 1998 dbSNP
rs74583253 2002 dbSNP
rs1177729290 2003 dbSNP
rs1432085444 2019 dbSNP
rs1470635827 2020 dbSNP
rs1331692613 2023 dbSNP
rs1358212304 2030 dbSNP
rs992078190 2041 dbSNP
rs1299646438 2043 dbSNP
rs565260804 2069 dbSNP
rs965783327 2075 dbSNP
rs822872 2079 dbSNP
rs1283776428 2083 dbSNP
rs923782311 2096 dbSNP
rs867979537 2098 dbSNP
rs1217537445 2099 dbSNP
rs144495029 2103 dbSNP
rs986711985 2107 dbSNP
rs977925910 2111 dbSNP
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rs1241537120 2116 dbSNP
rs1482893551 2125 dbSNP
rs554652174 2129 dbSNP
rs953646375 2136 dbSNP
rs1200615147 2151 dbSNP
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rs1326796424 5252 dbSNP
rs1019190860 5256 dbSNP
rs878888448 5259 dbSNP
rs894123838 5263 dbSNP
rs2023588 5273 dbSNP
rs1303206308 5275 dbSNP
rs151141183 5279 dbSNP
rs1216766889 5282 dbSNP
rs1405751773 5282 dbSNP
rs1415605882 5283 dbSNP
rs561916041 5287 dbSNP
rs182594774 5310 dbSNP
rs190928160 5314 dbSNP
rs994946691 5318 dbSNP
rs899224008 5322 dbSNP
rs149134288 5323 dbSNP
rs1191380209 5326 dbSNP
rs1245850095 5336 dbSNP
rs1475638793 5341 dbSNP
rs938026036 5344 dbSNP
rs1409416415 5359 dbSNP
rs558429900 5359 dbSNP
rs563395946 5363 dbSNP
rs1460017964 5364 dbSNP
rs1325480291 5366 dbSNP
rs1327343432 5368 dbSNP
rs1215632670 5375 dbSNP
rs1433391264 5396 dbSNP
rs1268903516 5403 dbSNP
rs571763341 5413 dbSNP
rs913077813 5414 dbSNP
rs1231710738 5416 dbSNP
rs1273209901 5417 dbSNP
rs976045108 5420 dbSNP
rs1336315701 5428 dbSNP
rs964329284 5430 dbSNP
rs145217483 5431 dbSNP
rs1447340387 5437 dbSNP
rs935830321 5440 dbSNP
rs750438160 5446 dbSNP
rs925734477 5450 dbSNP
rs989515108 5454 dbSNP
rs964384965 5455 dbSNP
rs1018526267 5476 dbSNP
rs956773719 5484 dbSNP
rs1485394888 5490 dbSNP
rs575700003 5493 dbSNP
rs998686854 5496 dbSNP
rs1162869802 5503 dbSNP
rs1386001370 5504 dbSNP
rs1288221838 5507 dbSNP
rs951006863 5510 dbSNP
rs1437056894 5519 dbSNP
rs995439158 5528 dbSNP
rs899321641 5532 dbSNP
rs1351424016 5536 dbSNP
rs1351024859 5539 dbSNP
rs1225245105 5541 dbSNP
rs1033802637 5550 dbSNP
rs1002247272 5551 dbSNP
rs906538048 5558 dbSNP
rs1484714446 5560 dbSNP
rs1187015309 5571 dbSNP
rs1046402666 5580 dbSNP
rs1471249663 5581 dbSNP
rs1157054724 5582 dbSNP
rs758651294 5586 dbSNP
rs950016168 5591 dbSNP
rs1315322492 5597 dbSNP
rs1374210002 5600 dbSNP
rs1393784917 5604 dbSNP
rs7503 5607 dbSNP
rs1460630314 5609 dbSNP
rs1024162274 5615 dbSNP
rs1013212468 5627 dbSNP
rs1240654408 5631 dbSNP
rs1423886371 5641 dbSNP
rs377734746 5643 dbSNP
rs894407155 5645 dbSNP
rs1234803624 5652 dbSNP
rs1426235781 5656 dbSNP
rs1282377404 5670 dbSNP
rs1345716552 5671 dbSNP
rs1199818514 5675 dbSNP
rs1251256234 5676 dbSNP
rs186441745 5693 dbSNP
rs1179866469 5698 dbSNP
rs1037995788 5704 dbSNP
rs1175988098 5706 dbSNP
rs1418086041 5706 dbSNP
rs1393790947 5716 dbSNP
rs1465926684 5724 dbSNP
rs1005196626 5725 dbSNP
rs886844490 5730 dbSNP
rs757220893 5743 dbSNP
rs1047222283 5745 dbSNP
rs933773485 5752 dbSNP
rs922722015 5754 dbSNP
rs925787875 5756 dbSNP
rs1186479926 5761 dbSNP
rs568591998 5763 dbSNP
rs974466864 5764 dbSNP
rs942922526 5769 dbSNP
rs1468259185 5770 dbSNP
rs1305286181 5772 dbSNP
rs373985386 5774 dbSNP
rs764213379 5775 dbSNP
rs1232394477 5776 dbSNP
rs1251843404 5784 dbSNP
rs915535871 5784 dbSNP
rs911573554 5793 dbSNP
rs987521883 5798 dbSNP
rs1257653816 5803 dbSNP
rs950397007 5805 dbSNP
rs763150789 5807 dbSNP
rs989464132 5816 dbSNP
rs1432998260 5817 dbSNP
rs973675852 5826 dbSNP
rs1375336218 5828 dbSNP
rs1463066508 5832 dbSNP
rs963541324 5833 dbSNP
rs11551119 5846 dbSNP
rs1398939760 5847 dbSNP
rs956721055 5861 dbSNP
rs68017043 5879 dbSNP
rs114850071 5884 dbSNP
rs970841676 5885 dbSNP
rs1386059510 5890 dbSNP
rs146445675 5892 dbSNP
rs201569395 5892 dbSNP
rs1373049254 5893 dbSNP
rs981071479 5893 dbSNP
rs202032585 5894 dbSNP
rs1439882603 5895 dbSNP
rs367954585 5895 dbSNP
rs9376 5897 dbSNP
rs1277580268 5900 dbSNP
rs369567428 5908 dbSNP
rs1335549587 5911 dbSNP
rs1158678178 5913 dbSNP
rs145446277 5937 dbSNP
rs1332959011 5946 dbSNP
rs1206161177 5953 dbSNP
rs1264461548 5954 dbSNP
rs958595297 5955 dbSNP
rs139981315 5966 dbSNP
rs1053485946 5968 dbSNP
rs377675532 5969 dbSNP
rs1475263108 5976 dbSNP
rs1166624138 5980 dbSNP
rs1000030110 5985 dbSNP
rs1457210495 5994 dbSNP
rs147603818 6000 dbSNP
rs886751121 6011 dbSNP
rs1386883695 6016 dbSNP
rs1397992718 6017 dbSNP
rs1176131702 6019 dbSNP
rs759967270 6022 dbSNP
rs1046729126 6030 dbSNP
rs998309596 6033 dbSNP
rs528919507 6034 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 83857.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uccgggUUCUAGUUGUUAACAg 5'
                |:||  |: |||||| 
Target 5' -cuuggAGGAAAAGAAAUUGUa 3'
 		1 - 21
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177599. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_1 PAR-CLIP data was present in ERX177611. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_1 PAR-CLIP data was present in ERX177617. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_3_7 PAR-CLIP data was present in ERX177623. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_1 PAR-CLIP data was present in ERX177629. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_7 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760583. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_A PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000256062.5 | 3UTR | CUUGGAGGAAAAGAAAUUGUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000256062.5 | 3UTR | UGGAGGAAAAGAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-7849-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT062192 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT064755 CCND2 cyclin D2 2 8
MIRT076594 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT086027 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT091394 EIF4A2 eukaryotic translation initiation factor 4A2 2 2
MIRT104730 KLF10 Kruppel like factor 10 2 2
MIRT105345 SLC7A2 solute carrier family 7 member 2 2 2
MIRT105672 PNMA2 paraneoplastic Ma antigen 2 2 6
MIRT173218 TMEM64 transmembrane protein 64 2 2
MIRT228305 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT229503 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT243387 SKIL SKI like proto-oncogene 2 2
MIRT257404 E2F3 E2F transcription factor 3 2 2
MIRT301069 SLC16A14 solute carrier family 16 member 14 2 4
MIRT307327 CTNNB1 catenin beta 1 2 2
MIRT443182 DENND4C DENN domain containing 4C 2 2
MIRT469272 RHOB ras homolog family member B 2 8
MIRT475106 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT484134 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT491117 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT504856 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT505544 SNX16 sorting nexin 16 2 6
MIRT506752 LCOR ligand dependent nuclear receptor corepressor 2 8
MIRT507358 FAM129A family with sequence similarity 129 member A 2 6
MIRT507812 CDK6 cyclin dependent kinase 6 2 6
MIRT510730 SON SON DNA binding protein 2 6
MIRT521296 RRAGD Ras related GTP binding D 2 4
MIRT521371 RNF11 ring finger protein 11 2 6
MIRT525860 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT527352 FAM69C family with sequence similarity 69 member C 2 2
MIRT528796 RAB32 RAB32, member RAS oncogene family 2 2
MIRT530417 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT533425 TWF1 twinfilin actin binding protein 1 2 2
MIRT539512 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543660 ZNF589 zinc finger protein 589 2 4
MIRT544833 ZNF639 zinc finger protein 639 2 2
MIRT545266 TRIM36 tripartite motif containing 36 2 4
MIRT545425 SLC39A6 solute carrier family 39 member 6 2 2
MIRT546070 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT546896 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT547932 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT548836 CHD1 chromodomain helicase DNA binding protein 1 2 4
MIRT550937 ZNF100 zinc finger protein 100 2 2
MIRT551840 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT553749 TBC1D8 TBC1 domain family member 8 2 2
MIRT554070 SOBP sine oculis binding protein homolog 2 2
MIRT554254 SIX4 SIX homeobox 4 2 2
MIRT558254 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT559252 BBX BBX, HMG-box containing 2 4
MIRT561110 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT561412 TSN translin 2 2
MIRT562154 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT563324 ORC4 origin recognition complex subunit 4 2 2
MIRT563985 SLFN11 schlafen family member 11 2 2
MIRT571387 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT575040 Fasl Fas ligand (TNF superfamily, member 6) 1 1
MIRT610374 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT611045 FASLG Fas ligand 2 3
MIRT625440 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT655071 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT656139 MSH6 mutS homolog 6 2 2
MIRT667042 PDE3A phosphodiesterase 3A 2 2
MIRT691264 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT699773 SEMA4D semaphorin 4D 2 2
MIRT707809 TSPAN6 tetraspanin 6 2 2
MIRT711125 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT714107 RLIM ring finger protein, LIM domain interacting 2 2
MIRT717792 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT717929 ZNF546 zinc finger protein 546 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7849-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-7849-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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