pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IL10RA   
Synonyms CD210, CD210a, CDW210A, HIL-10R, IL-10R1, IL10R
Description interleukin 10 receptor subunit alpha
Transcript NM_001558   
Expression
Putative miRNA Targets on IL10RA
3'UTR of IL10RA
(miRNA target sites are highlighted)
>IL10RA|NM_001558|3'UTR
   1 CTCGGGCTGAGAGGCTGCTTTTGATTTTAGCCATGCCTGCTCCTCTGCCTGGACCAGGAGGAGGGCCCCTGGGGCAGAAG
  81 TTAGGCACGAGGCAGTCTGGGCACTTTTCTGCAAGTCCACTGGGGCTGGCCCCAGCCAGGCCCTGCAGGGCTGGTCAGGG
 161 TGTCTGGGGCAGGAGGAGGCCAACTCACTGAACTAGTGCAGGGTATGTGGGTGGCACTGACCTGTTCTGTTGACTGGGGC
 241 CCTGCAGACTCTGGCAGAGCTGAGAAGGGCAGGGACCTTCTCCCTCCTAGGAACTCTTTCCTGTATCATAAAGGATTATT
 321 TGCTCAGGGGAACCATGGGGCTTTCTGGAGTTGTGGTGAGGCCACCAGGCTGAAGTCAGCTCAGACCCAGACCTCCCTGC
 401 TTAGGCCACTCGAGCATCAGAGCTTCCAGCAGGAGGAAGGGCTGTAGGAATGGAAGCTTCAGGGCCTTGCTGCTGGGGTC
 481 ATTTTTAGGGGAAAAAGGAGGATATGATGGTCACATGGGGAACCTCCCCTCATCGGGCCTCTGGGGCAGGAAGCTTGTCA
 561 CTGGAAGATCTTAAGGTATATATTTTCTGGACACTCAAACACATCATAATGGATTCACTGAGGGGAGACAAAGGGAGCCG
 641 AGACCCTGGATGGGGCTTCCAGCTCAGAACCCATCCCTCTGGTGGGTACCTCTGGCACCCATCTGCAAATATCTCCCTCT
 721 CTCCAACAAATGGAGTAGCATCCCCCTGGGGCACTTGCTGAGGCCAAGCCACTCACATCCTCACTTTGCTGCCCCACCAT
 801 CTTGCTGACAACTTCCAGAGAAGCCATGGTTTTTTGTATTGGTCATAACTCAGCCCTTTGGGCGGCCTCTGGGCTTGGGC
 881 ACCAGCTCATGCCAGCCCCAGAGGGTCAGGGTTGGAGGCCTGTGCTTGTGTTTGCTGCTAATGTCCAGCTACAGACCCAG
 961 AGGATAAGCCACTGGGCACTGGGCTGGGGTCCCTGCCTTGTTGGTGTTCAGCTGTGTGATTTTGGACTAGCCACTTGTCA
1041 GAGGGCCTCAATCTCCCATCTGTGAAATAAGGACTCCACCTTTAGGGGACCCTCCATGTTTGCTGGGTATTAGCCAAGCT
1121 GGTCCTGGGAGAATGCAGATACTGTCCGTGGACTACCAAGCTGGCTTGTTTCTTATGCCAGAGGCTAACAGATCCAATGG
1201 GAGTCCATGGTGTCATGCCAAGACAGTATCAGACACAGCCCCAGAAGGGGGCATTATGGGCCCTGCCTCCCCATAGGCCA
1281 TTTGGACTCTGCCTTCAAACAAAGGCAGTTCAGTCCACAGGCATGGAAGCTGTGAGGGGACAGGCCTGTGCGTGCCATCC
1361 AGAGTCATCTCAGCCCTGCCTTTCTCTGGAGCATTCTGAAAACAGATATTCTGGCCCAGGGAATCCAGCCATGACCCCCA
1441 CCCCTCTGCCAAAGTACTCTTAGGTGCCAGTCTGGTAACTGAACTCCCTCTGGAGGCAGGCTTGAGGGAGGATTCCTCAG
1521 GGTTCCCTTGAAAGCTTTATTTATTTATTTTGTTCATTTATTTATTGGAGAGGCAGCATTGCACAGTGAAAGAATTCTGG
1601 ATATCTCAGGAGCCCCGAAATTCTAGCTCTGACTTTGCTGTTTCCAGTGGTATGACCTTGGAGAAGTCACTTATCCTCTT
1681 GGAGCCTCAGTTTCCTCATCTGCAGAATAATGACTGACTTGTCTAATTCGTAGGGATGTGAGGTTCTGCTGAGGAAATGG
1761 GTATGAATGTGCCTTGAACACAAAGCTCTGTCAATAAGTGATACATGTTTTTTATTCCAATAAATTGTCAAGACCACAGG
1841 AAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acCCGAAAGAUCA-GAGUCGAga 5'
            | ||| :|:|| :||||||  
Target 5' ctGCCTTGTTGGTGTTCAGCTgt 3'
993 - 1015 144.00 -13.30
2
miRNA  3' acCCGAAAGAUCAGAGUCGAGa 5'
            |||  |  ||  ||||||| 
Target 5' caGGC--TGAAG--TCAGCTCa 3'
366 - 383 144.00 -13.60
3
miRNA  3' acccGA-AAGAUCAGAGUCGAGa 5'
              || ||  || |||||:|: 
Target 5' tatcCTCTTGGAGCCTCAGTTTc 3'
1672 - 1694 126.00 -11.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
879730 10 ClinVar
302560 105 ClinVar
302561 134 ClinVar
879731 204 ClinVar
879732 329 ClinVar
302562 355 ClinVar
302563 355 ClinVar
877774 406 ClinVar
877775 422 ClinVar
877776 544 ClinVar
877777 577 ClinVar
302564 640 ClinVar
302565 677 ClinVar
302566 757 ClinVar
878819 847 ClinVar
302567 855 ClinVar
302568 864 ClinVar
302569 867 ClinVar
878820 873 ClinVar
302570 969 ClinVar
878821 985 ClinVar
302571 1059 ClinVar
879400 1148 ClinVar
302572 1349 ClinVar
302573 1353 ClinVar
302574 1376 ClinVar
302575 1413 ClinVar
302576 1556 ClinVar
302577 1665 ClinVar
302578 1685 ClinVar
302579 1723 ClinVar
302580 1731 ClinVar
COSN1080151 5 COSMIC
COSN30109832 7 COSMIC
COSN30523040 10 COSMIC
COSN31608415 20 COSMIC
COSN30147304 34 COSMIC
COSN30497559 75 COSMIC
COSN28838864 87 COSMIC
COSN15665996 89 COSMIC
COSN2381364 92 COSMIC
COSN5896384 112 COSMIC
COSN25149193 228 COSMIC
COSN25874988 1617 COSMIC
COSN32062795 1717 COSMIC
COSN5896385 1807 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs949949977 4 dbSNP
rs777420665 5 dbSNP
rs1239049689 6 dbSNP
rs1250696978 9 dbSNP
rs377174523 10 dbSNP
rs770823843 14 dbSNP
rs986691990 16 dbSNP
rs773883781 18 dbSNP
rs1461973736 19 dbSNP
rs758999848 21 dbSNP
rs905724954 29 dbSNP
rs771637818 35 dbSNP
rs775277896 37 dbSNP
rs760229973 40 dbSNP
rs764567550 43 dbSNP
rs1388598082 48 dbSNP
rs1212500713 49 dbSNP
rs754121384 57 dbSNP
rs762437482 59 dbSNP
rs771548173 60 dbSNP
rs765786690 61 dbSNP
rs1318358869 63 dbSNP
rs886205072 66 dbSNP
rs758482673 69 dbSNP
rs779995704 74 dbSNP
rs1004474297 75 dbSNP
rs1489221578 79 dbSNP
rs751869208 80 dbSNP
rs552847009 83 dbSNP
rs1452382976 84 dbSNP
rs1426187484 85 dbSNP
rs1192185202 88 dbSNP
rs777667543 89 dbSNP
rs749043148 90 dbSNP
rs1358097673 93 dbSNP
rs924961060 96 dbSNP
rs144813995 98 dbSNP
rs936376531 103 dbSNP
rs886047710 105 dbSNP
rs1294340922 106 dbSNP
rs4252291 108 dbSNP
rs1398208223 110 dbSNP
rs1280050580 112 dbSNP
rs975441868 113 dbSNP
rs745389478 117 dbSNP
rs367888607 123 dbSNP
rs1443803402 124 dbSNP
rs1232467779 126 dbSNP
rs774879478 130 dbSNP
rs1310381471 131 dbSNP
rs1323280130 132 dbSNP
rs769584174 133 dbSNP
rs752174 134 dbSNP
rs1487036245 141 dbSNP
rs1218117553 142 dbSNP
rs1250336959 143 dbSNP
rs1265982098 148 dbSNP
rs760415076 155 dbSNP
rs979523059 161 dbSNP
rs1187851431 162 dbSNP
rs923999629 163 dbSNP
rs1412169942 164 dbSNP
rs768154454 170 dbSNP
rs1165814733 171 dbSNP
rs1292075131 176 dbSNP
rs1363396061 179 dbSNP
rs956790468 180 dbSNP
rs193211854 181 dbSNP
rs1300046952 184 dbSNP
rs1361224754 185 dbSNP
rs1414165043 193 dbSNP
rs1300978181 197 dbSNP
rs1381134693 198 dbSNP
rs1251215215 199 dbSNP
rs550348490 204 dbSNP
rs1312073968 206 dbSNP
rs1392540368 207 dbSNP
rs1305893738 208 dbSNP
rs905340440 209 dbSNP
rs1296459057 210 dbSNP
rs762206813 212 dbSNP
rs765841706 214 dbSNP
rs949989886 223 dbSNP
rs899233861 225 dbSNP
rs1286182121 238 dbSNP
rs773925356 240 dbSNP
rs766532837 241 dbSNP
rs1236210801 243 dbSNP
rs1484457518 245 dbSNP
rs993548019 251 dbSNP
rs1379928416 254 dbSNP
rs751566458 255 dbSNP
rs774200407 262 dbSNP
rs1438125077 264 dbSNP
rs755260028 265 dbSNP
rs1381043107 267 dbSNP
rs1434159127 269 dbSNP
rs1173894748 270 dbSNP
rs1292016629 274 dbSNP
rs1360786435 277 dbSNP
rs1026732038 278 dbSNP
rs1448489787 279 dbSNP
rs1221348459 283 dbSNP
rs1297337243 284 dbSNP
rs1357727459 285 dbSNP
rs951334083 287 dbSNP
rs575222022 291 dbSNP
rs987089705 292 dbSNP
rs1305522351 294 dbSNP
rs927128439 298 dbSNP
rs1346284152 302 dbSNP
rs1346591392 303 dbSNP
rs1302766795 304 dbSNP
rs1216925582 305 dbSNP
rs963850398 307 dbSNP
rs1277119991 309 dbSNP
rs773247328 311 dbSNP
rs1211419700 313 dbSNP
rs1238020810 319 dbSNP
rs1456694006 326 dbSNP
rs753647542 329 dbSNP
rs1238967159 330 dbSNP
rs544211984 331 dbSNP
rs759457965 341 dbSNP
rs745851262 343 dbSNP
rs1415029267 346 dbSNP
rs1305234022 351 dbSNP
rs936413336 354 dbSNP
rs146951811 355 dbSNP
rs4252292 355 dbSNP
rs886047711 355 dbSNP
rs1397900655 362 dbSNP
rs1466974850 371 dbSNP
rs1264901841 375 dbSNP
rs1206041721 376 dbSNP
rs1331644742 378 dbSNP
rs1004592528 383 dbSNP
rs949673670 387 dbSNP
rs1433688788 388 dbSNP
rs1040014363 391 dbSNP
rs746454263 396 dbSNP
rs768366983 406 dbSNP
rs766515284 410 dbSNP
rs776353911 412 dbSNP
rs938210911 413 dbSNP
rs747796762 416 dbSNP
rs1200867723 422 dbSNP
rs577615614 423 dbSNP
rs767482025 430 dbSNP
rs1029685030 432 dbSNP
rs1037827236 433 dbSNP
rs968349386 434 dbSNP
rs1001414207 443 dbSNP
rs1031184076 445 dbSNP
rs1175015094 457 dbSNP
rs1479183881 458 dbSNP
rs1425276284 460 dbSNP
rs956772110 461 dbSNP
rs1192922445 462 dbSNP
rs899287688 465 dbSNP
rs1480303573 471 dbSNP
rs1421334546 473 dbSNP
rs992276508 476 dbSNP
rs1171049327 477 dbSNP
rs751717558 479 dbSNP
rs993951130 483 dbSNP
rs1389730151 487 dbSNP
rs1403309583 488 dbSNP
rs1462111194 489 dbSNP
rs1263083371 490 dbSNP
rs1325073947 493 dbSNP
rs1350012674 494 dbSNP
rs1429355499 500 dbSNP
rs759770870 501 dbSNP
rs1339003019 502 dbSNP
rs1320140742 508 dbSNP
rs969815823 509 dbSNP
rs980814662 513 dbSNP
rs1220865707 516 dbSNP
rs1279301104 517 dbSNP
rs927173906 518 dbSNP
rs1356086583 521 dbSNP
rs930584929 524 dbSNP
rs1292269817 527 dbSNP
rs1452283078 529 dbSNP
rs1215937822 530 dbSNP
rs1257935599 533 dbSNP
rs187851353 535 dbSNP
rs767821571 536 dbSNP
rs1336036728 537 dbSNP
rs1467748163 538 dbSNP
rs770342673 539 dbSNP
rs1367716479 543 dbSNP
rs940437717 544 dbSNP
rs1168130209 550 dbSNP
rs560078524 555 dbSNP
rs1040128083 558 dbSNP
rs1164659902 562 dbSNP
rs1370997678 566 dbSNP
rs1414019680 572 dbSNP
rs773690502 577 dbSNP
rs763555919 579 dbSNP
rs1361883392 581 dbSNP
rs1402470457 584 dbSNP
rs996224091 591 dbSNP
rs1050110967 594 dbSNP
rs1273888568 595 dbSNP
rs1243011105 596 dbSNP
rs766756848 597 dbSNP
rs904071439 599 dbSNP
rs149737329 604 dbSNP
rs1337634123 608 dbSNP
rs1239675067 615 dbSNP
rs1284053179 618 dbSNP
rs774515293 624 dbSNP
rs1217306143 630 dbSNP
rs539723044 635 dbSNP
rs767733724 636 dbSNP
rs752985366 638 dbSNP
rs562410825 640 dbSNP
rs956885466 641 dbSNP
rs1314267750 644 dbSNP
rs1450443487 644 dbSNP
rs1156453937 655 dbSNP
rs1013655482 660 dbSNP
rs1025040550 661 dbSNP
rs969512492 662 dbSNP
rs1328879629 668 dbSNP
rs981145323 670 dbSNP
rs1377600335 672 dbSNP
rs1381670568 674 dbSNP
rs756303257 677 dbSNP
rs1159680520 678 dbSNP
rs952054980 685 dbSNP
rs192483380 691 dbSNP
rs1336498807 696 dbSNP
rs550568986 702 dbSNP
rs1446368201 703 dbSNP
rs1215795382 704 dbSNP
rs1307317759 714 dbSNP
rs1355970004 716 dbSNP
rs183921589 717 dbSNP
rs544218279 720 dbSNP
rs1282416803 724 dbSNP
rs1436183864 732 dbSNP
rs1342714884 733 dbSNP
rs922986848 734 dbSNP
rs779797365 739 dbSNP
rs1269699949 743 dbSNP
rs1457132274 747 dbSNP
rs926912294 755 dbSNP
rs188436763 757 dbSNP
rs754511480 764 dbSNP
rs1439809613 765 dbSNP
rs1197472932 768 dbSNP
rs903551333 769 dbSNP
rs1352693066 774 dbSNP
rs936892993 777 dbSNP
rs1482433637 780 dbSNP
rs1465039050 781 dbSNP
rs1174794919 783 dbSNP
rs754433715 786 dbSNP
rs1440789320 787 dbSNP
rs1188508876 792 dbSNP
rs1407358554 794 dbSNP
rs181251274 795 dbSNP
rs929421609 798 dbSNP
rs1420265790 799 dbSNP
rs1048254529 810 dbSNP
rs529560535 811 dbSNP
rs1428017424 815 dbSNP
rs1364579778 824 dbSNP
rs1300745936 827 dbSNP
rs1168923887 828 dbSNP
rs1329415250 830 dbSNP
rs1235377091 832 dbSNP
rs1263659236 835 dbSNP
rs1317093493 837 dbSNP
rs184203245 838 dbSNP
rs890529001 839 dbSNP
rs1259599255 846 dbSNP
rs1008933553 848 dbSNP
rs1039048649 851 dbSNP
rs535662153 855 dbSNP
rs779722798 864 dbSNP
rs1434370922 865 dbSNP
rs145605428 867 dbSNP
rs1267063892 874 dbSNP
rs1219060323 878 dbSNP
rs958086625 883 dbSNP
rs1430557091 886 dbSNP
rs769541103 890 dbSNP
rs1168905429 892 dbSNP
rs1402893151 893 dbSNP
rs1462747591 899 dbSNP
rs141472682 906 dbSNP
rs1223203570 907 dbSNP
rs1347912951 915 dbSNP
rs1223609256 920 dbSNP
rs1025155279 923 dbSNP
rs905236099 924 dbSNP
rs1009384581 925 dbSNP
rs1433288875 926 dbSNP
rs1293129167 929 dbSNP
rs1388731913 947 dbSNP
rs1388543980 949 dbSNP
rs1346210404 958 dbSNP
rs548198227 965 dbSNP
rs562515149 969 dbSNP
rs3825049 970 dbSNP
rs867287755 972 dbSNP
rs1307824965 973 dbSNP
rs1243670632 975 dbSNP
rs1427421322 977 dbSNP
rs1263262973 980 dbSNP
rs749570289 985 dbSNP
rs1222496809 989 dbSNP
rs1014770552 992 dbSNP
rs1488283171 994 dbSNP
rs1192121432 1001 dbSNP
rs961951960 1002 dbSNP
rs1242554553 1007 dbSNP
rs1214806153 1009 dbSNP
rs981783124 1015 dbSNP
rs1429460104 1017 dbSNP
rs1264956220 1023 dbSNP
rs1164378997 1029 dbSNP
rs1366898154 1031 dbSNP
rs1459516319 1035 dbSNP
rs1303777546 1048 dbSNP
rs926253425 1054 dbSNP
rs1359970108 1058 dbSNP
rs886047712 1059 dbSNP
rs771486740 1065 dbSNP
rs1408888646 1073 dbSNP
rs566331087 1074 dbSNP
rs1362422943 1075 dbSNP
rs1338003874 1076 dbSNP
rs923133632 1078 dbSNP
rs1395196063 1081 dbSNP
rs931723220 1086 dbSNP
rs1323086949 1088 dbSNP
rs985926323 1091 dbSNP
rs1172795388 1095 dbSNP
rs1284772156 1096 dbSNP
rs1350822376 1119 dbSNP
rs1215148681 1120 dbSNP
rs557883518 1128 dbSNP
rs1455039217 1134 dbSNP
rs527246428 1148 dbSNP
rs936295924 1149 dbSNP
rs1254354456 1151 dbSNP
rs1425842916 1156 dbSNP
rs1164449993 1158 dbSNP
rs983628515 1169 dbSNP
rs867650061 1171 dbSNP
rs1417882276 1195 dbSNP
rs1052114045 1198 dbSNP
rs540216075 1200 dbSNP
rs1460475730 1201 dbSNP
rs144617778 1204 dbSNP
rs1345643855 1205 dbSNP
rs892688224 1207 dbSNP
rs1253807982 1215 dbSNP
rs147878091 1217 dbSNP
rs747870091 1218 dbSNP
rs1447031123 1219 dbSNP
rs760086085 1220 dbSNP
rs949618924 1225 dbSNP
rs1371111508 1227 dbSNP
rs1452966982 1235 dbSNP
rs1308048396 1249 dbSNP
rs1374046776 1252 dbSNP
rs1440026699 1263 dbSNP
rs912000858 1268 dbSNP
rs944731631 1274 dbSNP
rs1317988931 1278 dbSNP
rs1316327524 1279 dbSNP
rs772186817 1280 dbSNP
rs1452628951 1281 dbSNP
rs1039059986 1283 dbSNP
rs1462913773 1285 dbSNP
rs1184460380 1296 dbSNP
rs1375226988 1299 dbSNP
rs551876008 1302 dbSNP
rs900473418 1304 dbSNP
rs1178964465 1305 dbSNP
rs1408787953 1313 dbSNP
rs1413902259 1314 dbSNP
rs1173829568 1321 dbSNP
rs905395520 1322 dbSNP
rs1427557594 1324 dbSNP
rs932573252 1330 dbSNP
rs1164128922 1332 dbSNP
rs775514435 1338 dbSNP
rs753938451 1339 dbSNP
rs1443861086 1340 dbSNP
rs1054136160 1345 dbSNP
rs4252293 1349 dbSNP
rs1330302339 1352 dbSNP
rs570165681 1353 dbSNP
rs1448375393 1356 dbSNP
rs888546826 1361 dbSNP
rs750246563 1363 dbSNP
rs1219203201 1364 dbSNP
rs1299750882 1365 dbSNP
rs1326136638 1368 dbSNP
rs762587847 1375 dbSNP
rs141609122 1376 dbSNP
rs751507453 1377 dbSNP
rs1245715616 1378 dbSNP
rs1206882863 1379 dbSNP
rs1320396684 1394 dbSNP
rs537660263 1404 dbSNP
rs961898621 1406 dbSNP
rs1392010831 1410 dbSNP
rs1372763220 1412 dbSNP
rs4252294 1413 dbSNP
rs1407065523 1415 dbSNP
rs1030565340 1421 dbSNP
rs1431300668 1425 dbSNP
rs1480644076 1429 dbSNP
rs1169628998 1431 dbSNP
rs1193511260 1435 dbSNP
rs1397834449 1436 dbSNP
rs780890442 1437 dbSNP
rs973076565 1440 dbSNP
rs1028353597 1442 dbSNP
rs1455919822 1443 dbSNP
rs1348848214 1445 dbSNP
rs953259377 1449 dbSNP
rs1433621736 1460 dbSNP
rs1292291317 1468 dbSNP
rs531035604 1469 dbSNP
rs1471344183 1471 dbSNP
rs986385328 1473 dbSNP
rs1278037874 1476 dbSNP
rs925025585 1479 dbSNP
rs1316413097 1485 dbSNP
rs752215054 1489 dbSNP
rs755852964 1494 dbSNP
rs1178207227 1496 dbSNP
rs1451141773 1498 dbSNP
rs950991086 1499 dbSNP
rs984025549 1502 dbSNP
rs1270981020 1504 dbSNP
rs1490510593 1511 dbSNP
rs1192852251 1514 dbSNP
rs1421265915 1521 dbSNP
rs1476260448 1522 dbSNP
rs190005348 1523 dbSNP
rs1471373165 1526 dbSNP
rs1168165055 1532 dbSNP
rs1166684048 1536 dbSNP
rs1412533329 1536 dbSNP
rs11263 1538 dbSNP
rs912029008 1541 dbSNP
rs71482124 1554 dbSNP
rs182393130 1556 dbSNP
rs987766219 1557 dbSNP
rs749670933 1560 dbSNP
rs1282926110 1562 dbSNP
rs1298098995 1571 dbSNP
rs757123938 1575 dbSNP
rs1388380629 1580 dbSNP
rs771269756 1582 dbSNP
rs1356273028 1584 dbSNP
rs949607623 1587 dbSNP
rs1433277154 1591 dbSNP
rs1046674775 1592 dbSNP
rs1355838848 1600 dbSNP
rs1156252826 1602 dbSNP
rs1226809400 1611 dbSNP
rs1442640530 1614 dbSNP
rs1294130775 1616 dbSNP
rs936015056 1617 dbSNP
rs779325158 1618 dbSNP
rs1206095939 1626 dbSNP
rs533185851 1628 dbSNP
rs1260877867 1648 dbSNP
rs1448519328 1651 dbSNP
rs1193557827 1652 dbSNP
rs1054452963 1653 dbSNP
rs1236664279 1655 dbSNP
rs1266809998 1657 dbSNP
rs893753954 1658 dbSNP
rs1165050430 1664 dbSNP
rs886047713 1665 dbSNP
rs368809383 1666 dbSNP
rs1385370241 1671 dbSNP
rs1231424006 1673 dbSNP
rs1418507959 1675 dbSNP
rs143719655 1685 dbSNP
rs1383353529 1692 dbSNP
rs1382590653 1706 dbSNP
rs886047714 1723 dbSNP
rs1319462171 1726 dbSNP
rs1340246222 1728 dbSNP
rs1470659480 1730 dbSNP
rs9610 1731 dbSNP
rs775565776 1734 dbSNP
rs760686369 1735 dbSNP
rs1464172368 1736 dbSNP
rs1374450762 1740 dbSNP
rs1239427724 1754 dbSNP
rs1440114331 1755 dbSNP
rs1283810655 1757 dbSNP
rs1246703486 1759 dbSNP
rs1186026367 1760 dbSNP
rs1352817423 1762 dbSNP
rs1205617954 1764 dbSNP
rs770944104 1770 dbSNP
rs1440470266 1773 dbSNP
rs1004258405 1776 dbSNP
rs1198814405 1781 dbSNP
rs1189595809 1782 dbSNP
rs1418172782 1783 dbSNP
rs1036992327 1788 dbSNP
rs1185068150 1793 dbSNP
rs1341675337 1793 dbSNP
rs1243301647 1805 dbSNP
rs768870898 1816 dbSNP
rs1176180127 1820 dbSNP
rs894866852 1823 dbSNP
rs1474591646 1838 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acccgaaagaucAGAGUCGAGa 5'
                      ||| :|||: 
Target 5' ------------UCUGGGCUUg 3'
1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000227752.3 | 3UTR | UCUGGGCUUGGGCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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