pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol SEMA7A   
Synonyms CD108, CDw108, H-SEMA-K1, H-Sema-L, JMH, SEMAK1, SEMAL
Description semaphorin 7A (John Milton Hagen blood group)
Transcript NM_001146029   
Other Transcripts NM_001146030 , NM_003612   
Expression
Putative miRNA Targets on SEMA7A
3'UTR of SEMA7A
(miRNA target sites are highlighted)
>SEMA7A|NM_001146029|3'UTR
   1 GGCCTCCCGAGGCTGGGCATGCCTCAGGCTTCTGCAGCCCAGGGCACTAGAACGTCTCACACTCAGAGCCGGCTGGCCCG
  81 GGAGCTCCTTGCCTGCCACTTCTTCCAGGGGACAGAATAACCCAGTGGAGGATGCCAGGCCTGGAGACGTCCAGCCGCAG
 161 GCGGCTGCTGGGCCCCAGGTGGCGCACGGATGGTGAGGGGCTGAGAATGAGGGCACCGACTGTGAAGCTGGGGCATCGAT
 241 GACCCAAGACTTTATCTTCTGGAAAATATTTTTCAGACTCCTCAAACTTGACTAAATGCAGCGATGCTCCCAGCCCAAGA
 321 GCCCATGGGTCGGGGAGTGGGTTTGGATAGGAGAGCTGGGACTCCATCTCGACCCTGGGGCTGAGGCCTGAGTCCTTCTG
 401 GACTCTTGGTACCCACATTGCCTCCTTCCCCTCCCTCTCTCATGGCTGGGTGGCTGGTGTTCCTGAAGACCCAGGGCTAC
 481 CCTCTGTCCAGCCCTGTCCTCTGCAGCTCCCTCTCTGGTCCTGGGTCCCACAGGACAGCCGCCTTGCATGTTTATTGAAG
 561 GATGTTTGCTTTCCGGACGGAAGGACGGAAAAAGCTCTATTTTTATGTTAGGCTTATTTCATGTATAGCTACTTCCGACT
 641 GCATCTGTATGAAAATACCAAAACTACATGCGGGGGGGTGGGTGGGAAAGGGAGGGGCTGGGAAGGGATGGGTTGGGGAG
 721 CGGGGGTGATCCCAGTCTGAGGCTCCCGGGGATGAGATAAGAGTCTGGAGACGGGCATGGGTTCTTGGAGAGTGGCATGA
 801 GCTGGCTCTGCCCTGGGAGCCCGGTCTGAGGGGGACGTTGTTGGAGCCCCTAGTGTTGGGGGTGGTTATGGGAGGGGGTG
 881 GGGTGAGGGAAACGGGAGAATGAAGGAGAAAACTGAGCCCTAGTTTCACCGTGTTCATTTGGAAGGACGAGCCGGGTCCT
 961 CAGGGGGAGGTTCCAGGACTCTGCCCTTGGCGTTGAGGGTTGGGGGGCGGGGGGCCTCCTCCCTTCCTCTCAGCCCCCTT
1041 CCCCAGGGGCTGTGCTTCCATGCTCCTAGCCTCCCACCTTCGCTCAGGACATGTTATAACTTAGGCTAAACTGTGAAAAT
1121 TCCGGTGGGGATGGCCTGGGCCGAGCTCTCCAGGCAGGCGGCCCTGCCCCCAGCCCTGTCCATCCATTTCAGGGGGGAGC
1201 TGGGCCCTTCTCCGGCTGTGTCTGGCCACCCAGGGCAGTGGCTGGGGCCAGTGGCCTTCCAGCTTTGGCCCCTGCACCTC
1281 TTCTCAATGCACTTTAATAATGTAACATATTACTAATAAACAAGCTATTTATTTACCTGCAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuaguguuuacaGGAAUUAUc 5'
                       :|||::|| 
Target 5' agtccttctggacTCTTGGTAc 3'
391 - 412 109.00 -7.40
2
miRNA  3' cuUAGUGUUUAC-AGGAAUUAUc 5'
            :| :| ::|| |||| || | 
Target 5' ggGTGGCTGGTGTTCCTGAAGAc 3'
448 - 470 96.00 -9.00
3
miRNA  3' cuUAG-UGUUUACAGGAA-UUAUc 5'
            :|| : :|:||  :|| :||| 
Target 5' ggGTCGGGGAGTGGGTTTGGATAg 3'
327 - 350 88.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30173711 4 COSMIC
COSN13638570 7 COSMIC
COSN26994240 8 COSMIC
COSN26994241 53 COSMIC
COSN28847584 54 COSMIC
COSN30186745 66 COSMIC
COSN30520740 78 COSMIC
COSN30190948 80 COSMIC
COSN30465914 97 COSMIC
COSN30157183 124 COSMIC
COSN30157173 125 COSMIC
COSN30186921 130 COSMIC
COSN30540102 162 COSMIC
COSN31537947 184 COSMIC
COSN28781817 187 COSMIC
COSN25919497 290 COSMIC
COSN25245674 863 COSMIC
COSN25253527 873 COSMIC
COSN7248478 1234 COSMIC
COSN1180037 1245 COSMIC
COSN6279917 1287 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776899323 2 dbSNP
rs534436660 5 dbSNP
rs371879563 8 dbSNP
rs1228588735 9 dbSNP
rs773216664 12 dbSNP
rs1424486659 16 dbSNP
rs1254568505 17 dbSNP
rs368448435 18 dbSNP
rs373974399 23 dbSNP
rs1278087342 27 dbSNP
rs992551885 29 dbSNP
rs1007152899 32 dbSNP
rs1217386789 39 dbSNP
rs1327666254 40 dbSNP
rs1295751284 41 dbSNP
rs778509363 44 dbSNP
rs768351215 47 dbSNP
rs1295893880 49 dbSNP
rs1338402796 49 dbSNP
rs147801728 53 dbSNP
rs1362871747 54 dbSNP
rs1483844373 60 dbSNP
rs927135022 61 dbSNP
rs757226876 62 dbSNP
rs1272099152 64 dbSNP
rs753873510 70 dbSNP
rs28362926 71 dbSNP
rs537311785 78 dbSNP
rs569605224 79 dbSNP
rs1226544479 80 dbSNP
rs930900253 95 dbSNP
rs897994569 99 dbSNP
rs1036500041 100 dbSNP
rs1378484378 111 dbSNP
rs1280235907 113 dbSNP
rs1444522722 121 dbSNP
rs1004845815 122 dbSNP
rs1368914079 128 dbSNP
rs755890842 130 dbSNP
rs950193960 139 dbSNP
rs917317260 140 dbSNP
rs1159509222 148 dbSNP
rs1382332785 149 dbSNP
rs1487927398 152 dbSNP
rs1264788749 156 dbSNP
rs144289778 157 dbSNP
rs937355048 162 dbSNP
rs1030869761 163 dbSNP
rs1296902067 170 dbSNP
rs1375555196 175 dbSNP
rs1446788863 181 dbSNP
rs925935973 183 dbSNP
rs979382109 184 dbSNP
rs2075593 187 dbSNP
rs565553616 188 dbSNP
rs1313727817 214 dbSNP
rs547041824 217 dbSNP
rs372573121 218 dbSNP
rs1177251350 221 dbSNP
rs1473307680 226 dbSNP
rs1179278720 227 dbSNP
rs1001012923 238 dbSNP
rs1477183713 246 dbSNP
rs902782998 250 dbSNP
rs1172204587 256 dbSNP
rs987961676 268 dbSNP
rs528578759 277 dbSNP
rs1168997468 280 dbSNP
rs1042629043 292 dbSNP
rs1490435066 294 dbSNP
rs1332840888 299 dbSNP
rs1267028642 302 dbSNP
rs190889068 303 dbSNP
rs2075594 304 dbSNP
rs1057311984 307 dbSNP
rs1318578110 315 dbSNP
rs1307671762 321 dbSNP
rs1260147912 325 dbSNP
rs937086281 332 dbSNP
rs927010316 335 dbSNP
rs530970736 340 dbSNP
rs1479223696 353 dbSNP
rs1192017033 354 dbSNP
rs563952048 355 dbSNP
rs1370127871 359 dbSNP
rs907799919 362 dbSNP
rs141987722 363 dbSNP
rs1404172695 368 dbSNP
rs186012518 370 dbSNP
rs559719917 371 dbSNP
rs751562573 375 dbSNP
rs1291293281 376 dbSNP
rs1354375282 378 dbSNP
rs964843316 381 dbSNP
rs1209267286 398 dbSNP
rs925945796 411 dbSNP
rs766496819 414 dbSNP
rs1032811885 415 dbSNP
rs763403357 416 dbSNP
rs541076231 421 dbSNP
rs1262991665 429 dbSNP
rs1478320376 438 dbSNP
rs946636852 439 dbSNP
rs1367193253 441 dbSNP
rs1472190027 442 dbSNP
rs181428928 450 dbSNP
rs1392216634 453 dbSNP
rs1269087775 459 dbSNP
rs1417548342 481 dbSNP
rs1189220623 486 dbSNP
rs558660039 498 dbSNP
rs543011537 513 dbSNP
rs1013839102 516 dbSNP
rs895493961 518 dbSNP
rs1311020514 520 dbSNP
rs191398734 540 dbSNP
rs965933150 540 dbSNP
rs936972667 541 dbSNP
rs905618326 549 dbSNP
rs953100550 562 dbSNP
rs1037374097 569 dbSNP
rs941908053 573 dbSNP
rs907705222 574 dbSNP
rs770081544 575 dbSNP
rs961997750 578 dbSNP
rs1267618776 579 dbSNP
rs1442388212 586 dbSNP
rs1224303710 587 dbSNP
rs1188846285 588 dbSNP
rs1015205910 599 dbSNP
rs1369751411 602 dbSNP
rs1314141121 605 dbSNP
rs1437211452 605 dbSNP
rs1014913457 606 dbSNP
rs1299515705 610 dbSNP
rs1421121025 618 dbSNP
rs896025884 621 dbSNP
rs1055932716 625 dbSNP
rs983359349 635 dbSNP
rs554408785 636 dbSNP
rs1385094138 639 dbSNP
rs1444605789 641 dbSNP
rs923158425 647 dbSNP
rs1308828881 664 dbSNP
rs974784194 668 dbSNP
rs904578615 670 dbSNP
rs866413912 671 dbSNP
rs1032433262 672 dbSNP
rs1258827998 672 dbSNP
rs536162556 674 dbSNP
rs1385747648 675 dbSNP
rs1157748575 677 dbSNP
rs1376870804 677 dbSNP
rs1174277326 679 dbSNP
rs891776192 679 dbSNP
rs997355910 679 dbSNP
rs1330809837 680 dbSNP
rs1377733692 682 dbSNP
rs892376597 683 dbSNP
rs1379005524 686 dbSNP
rs1173590463 688 dbSNP
rs1432325369 689 dbSNP
rs1262175767 690 dbSNP
rs1052738419 693 dbSNP
rs936499383 699 dbSNP
rs1247396922 700 dbSNP
rs1316641640 700 dbSNP
rs1204351751 704 dbSNP
rs1198569060 705 dbSNP
rs1347299950 708 dbSNP
rs1254467018 709 dbSNP
rs903630147 714 dbSNP
rs1189105018 715 dbSNP
rs565819246 718 dbSNP
rs1300301944 719 dbSNP
rs1226715031 721 dbSNP
rs1421165890 721 dbSNP
rs1477491703 722 dbSNP
rs979511376 726 dbSNP
rs1365067538 727 dbSNP
rs1171280306 729 dbSNP
rs1463526841 734 dbSNP
rs944588936 747 dbSNP
rs966903870 748 dbSNP
rs1021122817 751 dbSNP
rs1396098480 752 dbSNP
rs1013736067 772 dbSNP
rs896745706 773 dbSNP
rs1279317223 784 dbSNP
rs911735652 796 dbSNP
rs985899552 808 dbSNP
rs1264326781 812 dbSNP
rs1465264050 813 dbSNP
rs1034310807 816 dbSNP
rs1001211485 822 dbSNP
rs1170222627 823 dbSNP
rs920369639 830 dbSNP
rs1447472593 834 dbSNP
rs1425630455 836 dbSNP
rs1421967063 837 dbSNP
rs1162822245 838 dbSNP
rs1389473068 849 dbSNP
rs1184196570 854 dbSNP
rs80061177 856 dbSNP
rs1044796366 857 dbSNP
rs1200046778 862 dbSNP
rs1481070852 863 dbSNP
rs1399740408 864 dbSNP
rs1277088337 867 dbSNP
rs1203449436 868 dbSNP
rs1341970524 869 dbSNP
rs553693281 873 dbSNP
rs973548670 878 dbSNP
rs1247636901 879 dbSNP
rs1341700417 880 dbSNP
rs1309987135 881 dbSNP
rs1487855477 884 dbSNP
rs961771783 888 dbSNP
rs1370751875 892 dbSNP
rs905523842 893 dbSNP
rs1309538798 894 dbSNP
rs1482275891 900 dbSNP
rs1181197744 901 dbSNP
rs1255577240 918 dbSNP
rs1427562085 920 dbSNP
rs1369733523 921 dbSNP
rs1163701860 925 dbSNP
rs762101962 927 dbSNP
rs941770723 931 dbSNP
rs886298234 936 dbSNP
rs538864830 948 dbSNP
rs1159669679 949 dbSNP
rs1347311648 953 dbSNP
rs28362927 954 dbSNP
rs1302716932 963 dbSNP
rs1379267515 963 dbSNP
rs1186896003 964 dbSNP
rs1352584410 967 dbSNP
rs1240422099 968 dbSNP
rs1472998523 979 dbSNP
rs1254230490 983 dbSNP
rs552664912 984 dbSNP
rs1310162312 985 dbSNP
rs564154113 991 dbSNP
rs1293001313 992 dbSNP
rs1212105986 994 dbSNP
rs1354832446 996 dbSNP
rs1265407964 1000 dbSNP
rs1243424326 1001 dbSNP
rs1236398740 1002 dbSNP
rs1350630513 1002 dbSNP
rs1289771116 1003 dbSNP
rs1439391436 1005 dbSNP
rs904672077 1007 dbSNP
rs1407618185 1008 dbSNP
rs1410636823 1008 dbSNP
rs933120573 1009 dbSNP
rs891832192 1014 dbSNP
rs1323990575 1015 dbSNP
rs1447083275 1026 dbSNP
rs185509908 1027 dbSNP
rs1041411861 1029 dbSNP
rs1279043934 1036 dbSNP
rs923221653 1038 dbSNP
rs1406919025 1039 dbSNP
rs1196666992 1043 dbSNP
rs975029041 1048 dbSNP
rs943425179 1051 dbSNP
rs1205489581 1052 dbSNP
rs925269409 1073 dbSNP
rs1477255893 1077 dbSNP
rs979542368 1082 dbSNP
rs966800976 1085 dbSNP
rs75319052 1091 dbSNP
rs992333703 1100 dbSNP
rs961119198 1102 dbSNP
rs1330501468 1116 dbSNP
rs1033974975 1122 dbSNP
rs973217474 1123 dbSNP
rs530422916 1124 dbSNP
rs1347145154 1128 dbSNP
rs905555900 1129 dbSNP
rs907542063 1135 dbSNP
rs1015863277 1136 dbSNP
rs1005819922 1140 dbSNP
rs1277411036 1141 dbSNP
rs886203262 1142 dbSNP
rs1215186057 1143 dbSNP
rs960295981 1146 dbSNP
rs1201418264 1147 dbSNP
rs1450309453 1154 dbSNP
rs559859136 1159 dbSNP
rs541258076 1160 dbSNP
rs1490924934 1162 dbSNP
rs771615322 1169 dbSNP
rs980334677 1170 dbSNP
rs1423474947 1172 dbSNP
rs1476015754 1172 dbSNP
rs968907104 1172 dbSNP
rs997362087 1176 dbSNP
rs901672970 1182 dbSNP
rs1169186771 1186 dbSNP
rs1410988049 1190 dbSNP
rs28362928 1192 dbSNP
rs956293023 1193 dbSNP
rs1341105088 1202 dbSNP
rs1019632788 1205 dbSNP
rs1226135825 1210 dbSNP
rs564813297 1213 dbSNP
rs1275145855 1214 dbSNP
rs889772503 1224 dbSNP
rs113822312 1230 dbSNP
rs1329148838 1231 dbSNP
rs996047826 1232 dbSNP
rs745571924 1234 dbSNP
rs1043757977 1235 dbSNP
rs945323301 1240 dbSNP
rs913987192 1244 dbSNP
rs1448146670 1245 dbSNP
rs1390867979 1247 dbSNP
rs778541740 1248 dbSNP
rs1235255591 1249 dbSNP
rs1472139252 1259 dbSNP
rs899000889 1262 dbSNP
rs1426126909 1265 dbSNP
rs1386650701 1270 dbSNP
rs1174588593 1273 dbSNP
rs1477209038 1285 dbSNP
rs1037904721 1301 dbSNP
rs372258025 1305 dbSNP
rs561780594 1306 dbSNP
rs1385386850 1307 dbSNP
rs907593041 1311 dbSNP
rs1332038729 1315 dbSNP
rs1338813055 1316 dbSNP
rs1447326374 1325 dbSNP
rs1315793905 1336 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000261918.4 | 3UTR | CUUUGGCCCCUGCACCUCUUCUCAAUGCACUUUAAUAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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