pre-miRNA Information
pre-miRNA hsa-mir-3179-1   
Genomic Coordinates chr16: 14901508 - 14901591
Description Homo sapiens miR-3179-1 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-2   
Genomic Coordinates chr16: 16300159 - 16300242
Description Homo sapiens miR-3179-2 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-3   
Genomic Coordinates chr16: 18411894 - 18411977
Description Homo sapiens miR-3179-3 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-4   
Genomic Coordinates chr16: 18494493 - 18494576
Description Homo sapiens miR-3179-4 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-3179
Sequence 52| AGAAGGGGUGAAAUUUAAACGU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1351100204 1 dbSNP
rs1398613616 4 dbSNP
rs1340262765 20 dbSNP
rs1229893475 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RANBP10   
Synonyms -
Description RAN binding protein 10
Transcript NM_020850   
Expression
Putative miRNA Targets on RANBP10
3'UTR of RANBP10
(miRNA target sites are highlighted)
>RANBP10|NM_020850|3'UTR
   1 CTGACTGTGCTGGCTGGCTCTGGCTGGCCCTCCACTGGCCCCAGGGCTGGAGCTGCCCTGCCCTCCATAGGCAACTGGTG
  81 CAGGGACTGGGAAACCATAGACAGAGTCCACTCCTCCTGCCTGGCCTTTCCCCCTCTCCCTTTCCTTCCTTCCTTCCTTT
 161 CTCTGCCCACCACCCCGCTCAGTCTCTCTCTCTCTCCCCTTCACGTGCAGCGGCCTGTAACACAGTATTGGCTGGTTACT
 241 CTCATGTAGCGCCTTCTATTTTGAAAGGGGGGTTTTGTTTTGAGGAGGGGTTGGGGTTTTTAAATTTTTTTCTCCTGACT
 321 GAGCCACCAGTATTTATCTCTGGAGAGTTTGTGCTGAGCTGGTTTCTGCTAATTTAGTGATGAAGCCTATCCAAGTTGGT
 401 GATAGCTTATTATTTTCATAAGTAAAAAACAAATGAGATTATATATATATATATAAAAATATATATATTAAAAAAAAAGA
 481 CAGTATTTATCGTAGCATTAGTGGTCCAGCACCTCTTGGGTGAGGCTGTCCAGGCACCATGTTTTCTTTGAGTCCAACTC
 561 ATTAAAAAAGAAGAATCTCTGTCACCTCAGCCAAGTGATTTATTTTTTGCTCCCCCTTTTTTGAGTCACAGGCCGAGCTG
 641 CAGCCTAGGAAACCCAAATAGGGTTTGGTGGGCCACTTAGTGGGCATGGTTACATTGGTTTATAGCATCCCAAGAACTGT
 721 AGATCCCTAGGCCCCTGAGAGCTGGACAGAGCAGAGAACTACAGGGCCAAGGGTCCAGAGAAGTGATAACTTGGCCCAGG
 801 GCCACACAGCAGAGGTAGAGGGTCCTTGGCCAGCACACTATCTACCACTCTACCCCACCTCCCACTGCCTGCCTTGCTCC
 881 CCTTTCCTCCCTTTTCAATACCCTATCTTCCCTTGTTGTTAAGATGGCCAAATAATACATTTACTCTAAATTGATTGCCT
 961 GGAAACTACCTGCCTTCGTCCTGAGAGCTTCTGTGTGTCAGGCTGCTGGAAAGAAGACTCCATTCCCAGGACAGAGGCCC
1041 TTGAGTACAGGGGCTGCTTTCTTCCTGCCTAGATCTTCACCATCTCTGCACAGCTCTGAGAGAATGGATGCTTTCTGTTG
1121 AGAAACCAGTACCTTGTGGAGGCAGGTTCTTGGGCTGCTACTCCAGGGAGTGGATGGAATCCTTGGTCCCCTAGGCCAGA
1201 CTTCACTGCCACTGTGCCAGACAGCTCCCTGCAGCTGGGCCCTAGCCACTCTTAGGAAAGACTATTGGGAGTATTTGCTG
1281 GCCAGAGAATGGGACTCTATCAGCTTTACACATGTCCCACCAGCTGTTTCAGATAGATCCTTACAGCTGGCAGAGTAAAA
1361 GTGGTCCCGCTACCATTGGGGAATCAGGAAAGGAAAGACTGAGATGGTTGCCAGGACTTGGGGTGGCCCACCTGTGGAGA
1441 GGACTGGCTGCCCTGGAGGAGGAAAGGGAGGAAGTCTACACAGAGGAGCACCAGGACGGCTGGAATTTCCATATGTGCTT
1521 CACATTGTGAGGGGAGTGCACAAGCCGCCCATGCAAAGAGTAGGGTCAGCCATGGCAAGGCCGGAAGTTGAACTTTCAGT
1601 CCCTGCCTGAATCTGGGCTTTGCAAGCTCCTGCTCCATATTGGTGGACATGGGAATGGTTGGTGTGGCCTGAGATACCCA
1681 TTGCTCACCAGGCCTCACTGGGCCCACAGCTGGGCAACAAGAAAAATGTTTGAATTGGACCAACTGCTGGTGATGGGGCC
1761 AGGGCCCTGGGCCCTGTGCTGTCAGAATTCTGCCTTGGGAAATGATCCTATAGCTGCTGCTTTTTCTTGGTCCTTGGGGC
1841 TGGCAGACCCATAGACCATGGCCTGTTAGGAGGCGTCCTGTCTGTAAAGGAAATTCATCTCTTGTGACAGCCTGGGGCTA
1921 CCTAGCTCCCAAACCCAGAAGTTGGAGACATCAGGCTGTTTAAATGATCATAGCCTAGCAGGATTGGATTAAAACCACAG
2001 GCTTTTGCAGCTGGAATGGGGTTCAGTGAACATCTCCCCCATTCCTCTCTTGCTACAAATAAGGAAACAGGCCCAGGAGA
2081 TTAAGTGACTTGGCTAAAGTCACATAGCAAATTAGTAGCAGAGCCGGGACTATCCCTTATCCCTGTGGGTTGGGCAACAC
2161 TATTTAGTCCTGAAACCGAATGGCAGATAAACCCCATGAGGGGTCAGGCTGATGTGCCCTCCAGCAGTATCTGAGAAGCT
2241 GCTACCTTCAGGGGTGTGTCAGGGATGAGGACGGGTGCCTGAGCTTAGGTTGTGGAGTGGCTGAGAGGGCCCAGGAGGGC
2321 TCGGGACAGCTGTGTGCTGCATGGGGTTGGGTGTCTGCCTGGCTCGCACTTGGTACCCATGGCCACCTCCCCATTTTCTG
2401 TGCCTTATCTCACTGTTTCAGCTGAGTCCAAGTTGTTTACTCTGTTCCTCTCCAGAGGGGCTCTCTGTCCCAGTTGGGCA
2481 GCTCACCTTTGGGACATAAGCCTTTGCCCCACAAGCTGTGGAGAGGGCCAAAACCAAGCTGCTTGAGCCCACTCTCTTGC
2561 TGAGAGTCCAGGCCTGCCTGCCTGCCAGCCAGAGGTGCCCCTTATGCACATCCAGTCCTACCAGCCTGCTTCCAGGAGCC
2641 TAGAGTGGGAAAGGCACCTGGGGGAGCCCTGGTGAAGGGCTGGACCTGACCCATGGAGGCAGGAGGAAGACCTGGCTTTC
2721 TTGGTTTGTCCGGCCCTGGGGAGCAGCCTTCCCTACTCACTTTCCCCTTGCGGCACCAAATGGTCACTCCTTCCAGAGCA
2801 AAAACTGGCACTCATAGCAAGCCAGAACCCCCATCCCCATCCTCATGGGTCTGTGGCTGGGTGCAGGCCATCAAAATGGA
2881 CACCACGAGACAGAAGTGGGGACTGCCTGGCCACCTAGCGCCTTCCCACTCCTTAAGCAAGCACAAAGAAGATGAGGCAG
2961 AGAATTGTCAGAGCTGAAAGTTCCTTTGGTTGCTCACAACTCAGGTATGCACCCATGTGGCAGCCAGGCAGCGGAGCCCT
3041 ACTAGACTGCCAGTCTCATGCACCCAGACCTGTGGCCAGATTGTGGCCTCTGGCTGCCTCAGGCATTTTCCTCTTTGCAT
3121 TGGGTTTTCCTGCATTAGTAACTACAGCTGCAACAGACATCCTCCACATTGTGCACACTGGTTTTGCCTTTGTCCTCAAG
3201 AGTTGATACTTGGCATTAGCATGAAACTTGTGGGTGTGGGAGGATGGAGAGAGAACTCTAACACAAAACATCTTATTAAA
3281 ATTGTACTTGAGAGACAAAAAAAAAACTCTGTTGTATTTTGACAGAATTATTTTTATTAAAATACACATCCATGAGCAGT
3361 CAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugcaaauuuAAAGUGGGGAAGa 5'
                   | || ||||||| 
Target 5' gtctctctcTCTCTCCCCTTCa 3'
182 - 203 149.00 -12.30
2
miRNA  3' ugcaaaUUUA-AAGUGGGGAAGa 5'
                ||||  ||||:||||| 
Target 5' ggcaccAAATGGTCACTCCTTCc 3'
2772 - 2794 148.00 -15.30
3
miRNA  3' ugcAAAUUUAAAGU---GGGGAAGa 5'
             ||||  |||::   ||||||: 
Target 5' tgaTTTATTTTTTGCTCCCCCTTTt 3'
596 - 620 143.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30589725 9 COSMIC
COSN26991498 10 COSMIC
COSN31503789 17 COSMIC
COSN31613463 31 COSMIC
COSN29462053 33 COSMIC
COSN26991499 80 COSMIC
COSN31603674 95 COSMIC
COSN24305768 177 COSMIC
COSN31570013 250 COSMIC
COSN31481660 282 COSMIC
COSN30176770 285 COSMIC
COSN31521736 320 COSMIC
COSN30165103 329 COSMIC
COSN31488086 435 COSMIC
COSN31532055 458 COSMIC
COSN31563839 470 COSMIC
COSN27519027 500 COSMIC
COSN29461842 897 COSMIC
COSN26465146 993 COSMIC
COSN30543570 1003 COSMIC
COSN31603002 1209 COSMIC
COSN8601901 1237 COSMIC
COSN28725413 1339 COSMIC
COSN5410903 1352 COSMIC
COSN31544203 1368 COSMIC
COSN19143313 1450 COSMIC
COSN31537975 1498 COSMIC
COSN24969292 1715 COSMIC
COSN31961225 2109 COSMIC
COSN31603994 2402 COSMIC
COSN31604171 2516 COSMIC
COSN29982461 2755 COSMIC
COSN24149753 2866 COSMIC
COSN8236395 2922 COSMIC
COSN9651413 2965 COSMIC
COSN30540027 3104 COSMIC
COSN5410902 3136 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs899891046 3 dbSNP
rs369215072 7 dbSNP
rs765755178 8 dbSNP
rs755859143 9 dbSNP
rs377627048 13 dbSNP
rs1236852109 14 dbSNP
rs750033476 16 dbSNP
rs892289922 29 dbSNP
rs1389766981 30 dbSNP
rs1437704411 32 dbSNP
rs767435749 34 dbSNP
rs1308596464 36 dbSNP
rs1001431065 37 dbSNP
rs1373456438 39 dbSNP
rs1314329623 41 dbSNP
rs761691488 45 dbSNP
rs774224679 46 dbSNP
rs1156257939 48 dbSNP
rs564879271 57 dbSNP
rs546434599 67 dbSNP
rs1275826030 68 dbSNP
rs1057553 69 dbSNP
rs1204301629 77 dbSNP
rs1247330525 78 dbSNP
rs375993010 78 dbSNP
rs761544995 94 dbSNP
rs1220243358 102 dbSNP
rs765020064 105 dbSNP
rs572663897 109 dbSNP
rs1373608199 110 dbSNP
rs1477794229 111 dbSNP
rs1189560231 120 dbSNP
rs1427273731 121 dbSNP
rs1470339941 128 dbSNP
rs1044681867 130 dbSNP
rs1387059228 132 dbSNP
rs1459187121 134 dbSNP
rs774144902 138 dbSNP
rs554311447 153 dbSNP
rs564135914 154 dbSNP
rs1272713488 156 dbSNP
rs1369178958 160 dbSNP
rs940470317 160 dbSNP
rs1306652704 163 dbSNP
rs372991375 163 dbSNP
rs1326941049 170 dbSNP
rs1210378932 171 dbSNP
rs1284622684 175 dbSNP
rs1451255988 176 dbSNP
rs1197104719 179 dbSNP
rs1054196808 180 dbSNP
rs935760334 191 dbSNP
rs1220172014 192 dbSNP
rs574576436 195 dbSNP
rs1181506787 197 dbSNP
rs369126694 197 dbSNP
rs1370248649 199 dbSNP
rs903995251 202 dbSNP
rs117882855 204 dbSNP
rs558747765 205 dbSNP
rs1403941885 207 dbSNP
rs1298304262 211 dbSNP
rs779985235 212 dbSNP
rs976346337 217 dbSNP
rs975389014 219 dbSNP
rs940679440 224 dbSNP
rs964043858 225 dbSNP
rs1022749737 232 dbSNP
rs760144570 243 dbSNP
rs1355447881 246 dbSNP
rs1343081517 251 dbSNP
rs1292337165 258 dbSNP
rs1010987456 269 dbSNP
rs537844406 272 dbSNP
rs1030819345 285 dbSNP
rs769966208 288 dbSNP
rs1484076790 289 dbSNP
rs1183242112 290 dbSNP
rs1368378678 301 dbSNP
rs192457543 302 dbSNP
rs1034147900 320 dbSNP
rs906436687 330 dbSNP
rs1044962418 332 dbSNP
rs1197136514 351 dbSNP
rs1306877016 351 dbSNP
rs1344146244 357 dbSNP
rs781753004 362 dbSNP
rs1339769819 363 dbSNP
rs971258851 380 dbSNP
rs1037813259 399 dbSNP
rs1316826304 400 dbSNP
rs1024209416 401 dbSNP
rs558544627 405 dbSNP
rs7185560 422 dbSNP
rs1272739105 430 dbSNP
rs1047234853 441 dbSNP
rs1484105448 441 dbSNP
rs1256108836 451 dbSNP
rs1484972268 452 dbSNP
rs6499138 454 dbSNP
rs199972330 455 dbSNP
rs201086128 456 dbSNP
rs566681625 456 dbSNP
rs575080906 456 dbSNP
rs548351330 458 dbSNP
rs956785048 459 dbSNP
rs1031521847 460 dbSNP
rs529890660 460 dbSNP
rs202050443 461 dbSNP
rs889539424 462 dbSNP
rs1223383715 469 dbSNP
rs1255427845 469 dbSNP
rs1309445734 469 dbSNP
rs1049500446 470 dbSNP
rs1023459253 479 dbSNP
rs1206196894 479 dbSNP
rs569929073 479 dbSNP
rs1012118260 491 dbSNP
rs899101772 492 dbSNP
rs1429872798 503 dbSNP
rs1193286092 504 dbSNP
rs1383412262 522 dbSNP
rs1376644742 534 dbSNP
rs568973425 546 dbSNP
rs1037358965 548 dbSNP
rs550650609 554 dbSNP
rs532256561 557 dbSNP
rs1178559629 579 dbSNP
rs996300663 583 dbSNP
rs1406693963 599 dbSNP
rs1456537967 606 dbSNP
rs1318243256 609 dbSNP
rs902046208 610 dbSNP
rs1004970851 612 dbSNP
rs564833138 614 dbSNP
rs1329476155 615 dbSNP
rs539867555 616 dbSNP
rs1329034142 619 dbSNP
rs1359331450 628 dbSNP
rs1287904110 629 dbSNP
rs940961526 630 dbSNP
rs1205419070 634 dbSNP
rs922761679 635 dbSNP
rs1200910724 659 dbSNP
rs1429936504 674 dbSNP
rs1472191941 680 dbSNP
rs907847154 686 dbSNP
rs1174004554 694 dbSNP
rs527961566 709 dbSNP
rs560656221 717 dbSNP
rs1346816423 723 dbSNP
rs542398430 725 dbSNP
rs1172515523 726 dbSNP
rs1188566382 733 dbSNP
rs1426788081 738 dbSNP
rs1293209186 745 dbSNP
rs930711133 748 dbSNP
rs942950287 754 dbSNP
rs1406875225 769 dbSNP
rs1283946603 772 dbSNP
rs139172917 773 dbSNP
rs1227166787 777 dbSNP
rs980205730 784 dbSNP
rs556340725 798 dbSNP
rs1317953281 800 dbSNP
rs1244484169 816 dbSNP
rs1264524382 817 dbSNP
rs1462844651 821 dbSNP
rs1489692908 821 dbSNP
rs76631359 827 dbSNP
rs1268895191 831 dbSNP
rs917099290 836 dbSNP
rs778345561 838 dbSNP
rs956923854 840 dbSNP
rs988703051 847 dbSNP
rs1419490905 850 dbSNP
rs1163755697 856 dbSNP
rs1319121737 858 dbSNP
rs1366956489 873 dbSNP
rs1253587551 874 dbSNP
rs1426720027 876 dbSNP
rs956151717 886 dbSNP
rs73591935 889 dbSNP
rs1370095673 894 dbSNP
rs1408059592 901 dbSNP
rs1300466472 914 dbSNP
rs1374638363 915 dbSNP
rs1305227824 921 dbSNP
rs1310957144 921 dbSNP
rs1356832070 926 dbSNP
rs1294257787 928 dbSNP
rs982152621 931 dbSNP
rs1000259981 941 dbSNP
rs1396189077 948 dbSNP
rs970826572 963 dbSNP
rs1340903904 966 dbSNP
rs556862759 970 dbSNP
rs1480888334 977 dbSNP
rs963298353 978 dbSNP
rs1240966167 984 dbSNP
rs753572148 993 dbSNP
rs1400824116 999 dbSNP
rs1446217127 999 dbSNP
rs1299781095 1003 dbSNP
rs1408313766 1004 dbSNP
rs71393963 1010 dbSNP
rs1028012586 1016 dbSNP
rs1355640812 1016 dbSNP
rs558890561 1021 dbSNP
rs1460434625 1032 dbSNP
rs1385507623 1033 dbSNP
rs1453807839 1040 dbSNP
rs1372528440 1045 dbSNP
rs1016615496 1050 dbSNP
rs1165589675 1052 dbSNP
rs1004516206 1053 dbSNP
rs1274424376 1054 dbSNP
rs886114319 1056 dbSNP
rs1051463427 1061 dbSNP
rs1209409043 1065 dbSNP
rs1261157779 1072 dbSNP
rs1183285707 1081 dbSNP
rs1462521113 1082 dbSNP
rs778339688 1083 dbSNP
rs552520285 1091 dbSNP
rs1247668177 1093 dbSNP
rs1474516815 1099 dbSNP
rs533974467 1102 dbSNP
rs901993752 1106 dbSNP
rs1420404125 1107 dbSNP
rs1040538657 1111 dbSNP
rs1005095609 1117 dbSNP
rs1174965297 1132 dbSNP
rs1408900536 1133 dbSNP
rs886700125 1158 dbSNP
rs1194533313 1160 dbSNP
rs536539836 1163 dbSNP
rs1387465745 1167 dbSNP
rs1049355233 1168 dbSNP
rs1250196620 1178 dbSNP
rs1428130424 1183 dbSNP
rs930620560 1185 dbSNP
rs1361047952 1190 dbSNP
rs1218100137 1192 dbSNP
rs927307151 1194 dbSNP
rs1044470169 1202 dbSNP
rs1325532664 1204 dbSNP
rs1204079272 1211 dbSNP
rs1244840164 1222 dbSNP
rs950131852 1227 dbSNP
rs771500760 1229 dbSNP
rs755040190 1232 dbSNP
rs1389546053 1234 dbSNP
rs566752129 1238 dbSNP
rs191411971 1242 dbSNP
rs988649040 1246 dbSNP
rs1395690215 1264 dbSNP
rs935630036 1277 dbSNP
rs923942023 1281 dbSNP
rs1383339786 1284 dbSNP
rs1402784454 1287 dbSNP
rs955931293 1295 dbSNP
rs1319927212 1298 dbSNP
rs982102395 1299 dbSNP
rs1403824060 1301 dbSNP
rs879614377 1311 dbSNP
rs796472247 1321 dbSNP
rs978726887 1331 dbSNP
rs554616737 1337 dbSNP
rs990647193 1338 dbSNP
rs1180110528 1339 dbSNP
rs953832468 1363 dbSNP
rs1027961644 1367 dbSNP
rs1451199340 1368 dbSNP
rs976449607 1369 dbSNP
rs151217060 1374 dbSNP
rs965103285 1383 dbSNP
rs1490532438 1389 dbSNP
rs1182162319 1391 dbSNP
rs1362536505 1396 dbSNP
rs950685703 1398 dbSNP
rs1029987643 1404 dbSNP
rs1225429202 1405 dbSNP
rs997195856 1416 dbSNP
rs1423539451 1432 dbSNP
rs900227719 1435 dbSNP
rs1019037313 1438 dbSNP
rs142239859 1452 dbSNP
rs1405003273 1467 dbSNP
rs1007025334 1475 dbSNP
rs1350618148 1481 dbSNP
rs1221217281 1485 dbSNP
rs1279859188 1488 dbSNP
rs550807594 1497 dbSNP
rs1028307883 1498 dbSNP
rs1294200132 1499 dbSNP
rs1281005168 1511 dbSNP
rs1360312082 1515 dbSNP
rs1204476217 1523 dbSNP
rs1236608019 1528 dbSNP
rs1335014149 1533 dbSNP
rs140629848 1536 dbSNP
rs1182996904 1537 dbSNP
rs905839053 1538 dbSNP
rs1237338560 1540 dbSNP
rs1406742360 1546 dbSNP
rs1343677867 1547 dbSNP
rs1386673364 1549 dbSNP
rs547590158 1552 dbSNP
rs4474673 1553 dbSNP
rs1394261901 1558 dbSNP
rs375388155 1565 dbSNP
rs895894756 1566 dbSNP
rs1053245946 1569 dbSNP
rs934472676 1571 dbSNP
rs528114692 1573 dbSNP
rs1450155560 1575 dbSNP
rs1317471884 1576 dbSNP
rs925839002 1577 dbSNP
rs979060215 1582 dbSNP
rs1226805028 1583 dbSNP
rs1249622559 1590 dbSNP
rs949405808 1590 dbSNP
rs761745129 1591 dbSNP
rs1453469336 1597 dbSNP
rs916627105 1602 dbSNP
rs932591200 1605 dbSNP
rs1244615543 1608 dbSNP
rs1444801181 1608 dbSNP
rs560834829 1616 dbSNP
rs1191850024 1617 dbSNP
rs1370907540 1618 dbSNP
rs991322163 1619 dbSNP
rs942162748 1623 dbSNP
rs1378615385 1627 dbSNP
rs909038519 1628 dbSNP
rs920890624 1637 dbSNP
rs976395551 1648 dbSNP
rs1479754761 1651 dbSNP
rs1407118701 1653 dbSNP
rs1381937064 1658 dbSNP
rs1266080987 1659 dbSNP
rs965050542 1661 dbSNP
rs1198075129 1662 dbSNP
rs950583234 1664 dbSNP
rs774130616 1672 dbSNP
rs1205978755 1675 dbSNP
rs1264066164 1678 dbSNP
rs1485743478 1680 dbSNP
rs1204241529 1694 dbSNP
rs975706092 1698 dbSNP
rs1448265332 1702 dbSNP
rs1193216584 1709 dbSNP
rs1428537370 1710 dbSNP
rs372390141 1712 dbSNP
rs1479377510 1726 dbSNP
rs964382211 1728 dbSNP
rs186564360 1743 dbSNP
rs1015295518 1744 dbSNP
rs748900284 1745 dbSNP
rs530335398 1752 dbSNP
rs1017316606 1753 dbSNP
rs1011738220 1758 dbSNP
rs562715194 1759 dbSNP
rs1302559284 1764 dbSNP
rs1225217808 1765 dbSNP
rs1344174605 1767 dbSNP
rs982580513 1769 dbSNP
rs950918104 1770 dbSNP
rs1380234419 1771 dbSNP
rs1284468847 1780 dbSNP
rs1343567976 1798 dbSNP
rs1027841416 1802 dbSNP
rs995458584 1805 dbSNP
rs892910533 1818 dbSNP
rs1032911466 1819 dbSNP
rs906119952 1828 dbSNP
rs1282634972 1831 dbSNP
rs999713737 1832 dbSNP
rs1486611736 1833 dbSNP
rs544430844 1834 dbSNP
rs1328327880 1835 dbSNP
rs1046634871 1850 dbSNP
rs768554602 1851 dbSNP
rs1381894645 1858 dbSNP
rs1267937742 1868 dbSNP
rs1407236699 1870 dbSNP
rs1179051075 1873 dbSNP
rs866142840 1874 dbSNP
rs895841516 1875 dbSNP
rs1163165398 1880 dbSNP
rs1406821992 1882 dbSNP
rs1304320764 1889 dbSNP
rs1053602328 1893 dbSNP
rs1390043445 1895 dbSNP
rs1309521550 1904 dbSNP
rs934776892 1908 dbSNP
rs1317892822 1909 dbSNP
rs904333182 1910 dbSNP
rs115290270 1926 dbSNP
rs1224023707 1935 dbSNP
rs1475445848 1942 dbSNP
rs932536814 1944 dbSNP
rs1243390261 1954 dbSNP
rs1252483122 1959 dbSNP
rs1190531631 1963 dbSNP
rs1446091074 1970 dbSNP
rs1440060446 1971 dbSNP
rs921173368 1975 dbSNP
rs976678392 1984 dbSNP
rs1383583948 1999 dbSNP
rs1426656970 2008 dbSNP
rs1205323353 2012 dbSNP
rs943689778 2018 dbSNP
rs779733528 2022 dbSNP
rs1321225591 2036 dbSNP
rs1354470608 2039 dbSNP
rs1460977532 2041 dbSNP
rs1374573808 2051 dbSNP
rs199822423 2051 dbSNP
rs1215128240 2052 dbSNP
rs1313968883 2055 dbSNP
rs908214375 2065 dbSNP
rs772975896 2079 dbSNP
rs1360639275 2081 dbSNP
rs1226895358 2085 dbSNP
rs1289884385 2093 dbSNP
rs952497363 2096 dbSNP
rs1202419385 2097 dbSNP
rs763064956 2098 dbSNP
rs920726462 2104 dbSNP
rs1383808785 2117 dbSNP
rs765080577 2125 dbSNP
rs1241555189 2126 dbSNP
rs1450896359 2127 dbSNP
rs775825720 2131 dbSNP
rs1446602265 2141 dbSNP
rs1182662957 2142 dbSNP
rs1418967376 2144 dbSNP
rs769944818 2148 dbSNP
rs989861757 2154 dbSNP
rs1401615345 2167 dbSNP
rs181927567 2177 dbSNP
rs1412165374 2178 dbSNP
rs1420970909 2180 dbSNP
rs1284405990 2181 dbSNP
rs189452875 2186 dbSNP
rs1165669020 2194 dbSNP
rs745897409 2195 dbSNP
rs1318447649 2201 dbSNP
rs1222679704 2205 dbSNP
rs999610033 2209 dbSNP
rs1462476951 2210 dbSNP
rs1474831812 2211 dbSNP
rs1241716438 2215 dbSNP
rs1385457048 2250 dbSNP
rs573110359 2253 dbSNP
rs966859007 2256 dbSNP
rs1185099387 2257 dbSNP
rs1174894871 2269 dbSNP
rs1431969163 2273 dbSNP
rs960001256 2274 dbSNP
rs1334446419 2281 dbSNP
rs1031692709 2286 dbSNP
rs999307803 2290 dbSNP
rs571027363 2301 dbSNP
rs1428066263 2307 dbSNP
rs1290055546 2308 dbSNP
rs184039380 2320 dbSNP
rs996633936 2322 dbSNP
rs1416124940 2323 dbSNP
rs1325474646 2327 dbSNP
rs899700702 2335 dbSNP
rs895427591 2338 dbSNP
rs1283854936 2339 dbSNP
rs1315297364 2341 dbSNP
rs1040911391 2350 dbSNP
rs1264074620 2352 dbSNP
rs761704256 2355 dbSNP
rs1214061432 2359 dbSNP
rs1197946838 2360 dbSNP
rs908164507 2365 dbSNP
rs1478578299 2366 dbSNP
rs1158303730 2367 dbSNP
rs1006237706 2370 dbSNP
rs887819163 2379 dbSNP
rs1046735150 2385 dbSNP
rs931005758 2386 dbSNP
rs1160072066 2390 dbSNP
rs1360666309 2413 dbSNP
rs1403767680 2415 dbSNP
rs1301253871 2417 dbSNP
rs1332709874 2426 dbSNP
rs868119491 2428 dbSNP
rs1436954226 2429 dbSNP
rs1047815252 2431 dbSNP
rs929409106 2442 dbSNP
rs1225741242 2447 dbSNP
rs1358863045 2460 dbSNP
rs1220296780 2462 dbSNP
rs1294611667 2463 dbSNP
rs780995121 2467 dbSNP
rs1244112898 2472 dbSNP
rs536519267 2473 dbSNP
rs1231585143 2478 dbSNP
rs1471348974 2481 dbSNP
rs1040254799 2490 dbSNP
rs1280532091 2507 dbSNP
rs1423480391 2510 dbSNP
rs1161069867 2513 dbSNP
rs943254347 2528 dbSNP
rs1405953478 2529 dbSNP
rs770137678 2531 dbSNP
rs980539053 2534 dbSNP
rs575628819 2535 dbSNP
rs1328843392 2536 dbSNP
rs916097030 2537 dbSNP
rs1310299763 2538 dbSNP
rs924324347 2539 dbSNP
rs993058117 2548 dbSNP
rs960325384 2554 dbSNP
rs1032058263 2556 dbSNP
rs1357128758 2557 dbSNP
rs971162719 2563 dbSNP
rs1271468282 2587 dbSNP
rs1025082884 2605 dbSNP
rs1199614155 2612 dbSNP
rs998860183 2616 dbSNP
rs551175024 2619 dbSNP
rs1238423803 2639 dbSNP
rs969162859 2643 dbSNP
rs1021695096 2647 dbSNP
rs996915654 2648 dbSNP
rs1181369773 2650 dbSNP
rs899651639 2662 dbSNP
rs868629210 2668 dbSNP
rs1472825519 2688 dbSNP
rs1167300667 2690 dbSNP
rs1394195166 2693 dbSNP
rs1008065503 2694 dbSNP
rs959864924 2706 dbSNP
rs1033937253 2723 dbSNP
rs1006599406 2728 dbSNP
rs557169063 2731 dbSNP
rs1047458648 2732 dbSNP
rs776595259 2746 dbSNP
rs930973996 2757 dbSNP
rs1442420629 2759 dbSNP
rs1412728296 2760 dbSNP
rs919612647 2771 dbSNP
rs370157072 2772 dbSNP
rs1219642396 2776 dbSNP
rs1262987802 2781 dbSNP
rs545956309 2783 dbSNP
rs1231092970 2789 dbSNP
rs1257790580 2801 dbSNP
rs147232097 2816 dbSNP
rs1191781579 2826 dbSNP
rs535219970 2833 dbSNP
rs1478722991 2841 dbSNP
rs1171292571 2870 dbSNP
rs1294087273 2874 dbSNP
rs1468008840 2877 dbSNP
rs1304842907 2886 dbSNP
rs1403122495 2892 dbSNP
rs993006014 2899 dbSNP
rs1359017250 2900 dbSNP
rs1316231144 2902 dbSNP
rs181306398 2906 dbSNP
rs747574712 2919 dbSNP
rs188065581 2920 dbSNP
rs1321898926 2923 dbSNP
rs1371690842 2927 dbSNP
rs924886549 2937 dbSNP
rs978101839 2938 dbSNP
rs531380807 2942 dbSNP
rs1345212507 2944 dbSNP
rs1204039614 2951 dbSNP
rs888993152 2953 dbSNP
rs1345541295 2954 dbSNP
rs1488976641 2967 dbSNP
rs1194352111 2975 dbSNP
rs1054387045 2977 dbSNP
rs1479347415 2980 dbSNP
rs548985673 2982 dbSNP
rs935952306 2995 dbSNP
rs1453405094 3005 dbSNP
rs768162539 3007 dbSNP
rs1157036436 3017 dbSNP
rs1362594505 3022 dbSNP
rs1420345787 3031 dbSNP
rs1021598056 3032 dbSNP
rs1172954146 3033 dbSNP
rs1344117169 3036 dbSNP
rs977082682 3043 dbSNP
rs975428991 3049 dbSNP
rs949793961 3055 dbSNP
rs1335540259 3056 dbSNP
rs530308099 3060 dbSNP
rs964103605 3061 dbSNP
rs562879641 3081 dbSNP
rs1402213773 3083 dbSNP
rs1405574039 3110 dbSNP
rs1216642221 3111 dbSNP
rs1290965212 3116 dbSNP
rs1192849900 3139 dbSNP
rs1267875237 3163 dbSNP
rs1181315056 3166 dbSNP
rs992244795 3169 dbSNP
rs1245 3171 dbSNP
rs1036763358 3180 dbSNP
rs1019691380 3184 dbSNP
rs1382358121 3193 dbSNP
rs959574002 3203 dbSNP
rs1271074205 3208 dbSNP
rs1034296030 3209 dbSNP
rs1197372405 3209 dbSNP
rs1364255247 3210 dbSNP
rs1008056976 3211 dbSNP
rs886963515 3217 dbSNP
rs1389991204 3235 dbSNP
rs952421142 3240 dbSNP
rs1378584262 3250 dbSNP
rs1240249069 3260 dbSNP
rs1025545401 3264 dbSNP
rs1218258359 3270 dbSNP
rs1223745735 3276 dbSNP
rs1265932828 3278 dbSNP
rs550753378 3283 dbSNP
rs1196469793 3284 dbSNP
rs532615998 3287 dbSNP
rs1417834459 3288 dbSNP
rs1440477539 3289 dbSNP
rs1284033798 3290 dbSNP
rs1183217400 3291 dbSNP
rs1224596319 3292 dbSNP
rs1326285896 3293 dbSNP
rs1282006114 3294 dbSNP
rs12445280 3295 dbSNP
rs1402539294 3296 dbSNP
rs145354201 3297 dbSNP
rs993510829 3306 dbSNP
rs543994390 3307 dbSNP
rs562334304 3307 dbSNP
rs1019043555 3311 dbSNP
rs1432499652 3313 dbSNP
rs1447143645 3324 dbSNP
rs1335652170 3325 dbSNP
rs947753968 3340 dbSNP
rs778257466 3346 dbSNP
rs1158168630 3352 dbSNP
rs540331275 3359 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugcaaauuuAAAGUGGGGAAGa 5'
                   | || ||||||| 
Target 5' -----ucucUCUCUCCCCUUCa 3'
1 - 17
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugcaaauuuAAAGUGGGGaaga 5'
                   | || ||||    
Target 5' gucucucucUCUCUCCCC---- 3'
1 - 18
Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000317506.3 | 3UTR | GUCUCUCUCUCUCUCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000317506.3 | 3UTR | UCUCUCUCUCCCCUUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
133 hsa-miR-3179 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102087 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT110061 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 6
MIRT112198 BTG2 BTG anti-proliferation factor 2 2 2
MIRT117668 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT146657 MINK1 misshapen like kinase 1 2 2
MIRT175505 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT180535 TXNIP thioredoxin interacting protein 2 2
MIRT190624 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT190650 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT366902 NONO non-POU domain containing octamer binding 2 2
MIRT443554 ZFP3 ZFP3 zinc finger protein 2 2
MIRT445953 MLLT11 MLLT11, transcription factor 7 cofactor 2 2
MIRT446042 HMCN1 hemicentin 1 2 2
MIRT447968 MSH6 mutS homolog 6 2 2
MIRT448634 ONECUT1 one cut homeobox 1 2 2
MIRT449316 MRO maestro 2 2
MIRT451380 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451547 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451807 CDCA3 cell division cycle associated 3 2 4
MIRT451916 ILK integrin linked kinase 2 2
MIRT451938 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452189 KIAA1456 KIAA1456 2 2
MIRT452498 HMGXB3 HMG-box containing 3 2 2
MIRT452548 ZNF467 zinc finger protein 467 2 2
MIRT453844 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT454515 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT455363 KDM5C lysine demethylase 5C 2 2
MIRT455455 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT455628 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 10
MIRT455639 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 10
MIRT455690 GLO1 glyoxalase I 2 2
MIRT456300 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT456784 MTHFSD methenyltetrahydrofolate synthetase domain containing 2 2
MIRT456819 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT457566 ZNF34 zinc finger protein 34 2 2
MIRT457604 IDS iduronate 2-sulfatase 2 2
MIRT458236 NXPH3 neurexophilin 3 2 2
MIRT458313 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458350 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458670 GPR35 G protein-coupled receptor 35 2 2
MIRT459675 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT461126 RAB36 RAB36, member RAS oncogene family 2 2
MIRT461918 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462301 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463520 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT464378 URM1 ubiquitin related modifier 1 2 2
MIRT464614 UBE4B ubiquitination factor E4B 2 2
MIRT464711 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465520 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465974 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466058 TMEM189 transmembrane protein 189 2 2
MIRT466548 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT466647 TAGLN2 transgelin 2 2 2
MIRT467357 SP2 Sp2 transcription factor 2 2
MIRT468744 SDC2 syndecan 2 2 2
MIRT470244 PRRC2A proline rich coiled-coil 2A 2 2
MIRT471426 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471732 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472190 NHP2L1 small nuclear ribonucleoprotein 13 2 2
MIRT472450 NAV2 neuron navigator 2 2 6
MIRT474563 KLHDC3 kelch domain containing 3 2 2
MIRT474936 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475165 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475399 ICMT isoprenylcysteine carboxyl methyltransferase 2 4
MIRT475426 ICK intestinal cell kinase 2 2
MIRT477090 FAM168A family with sequence similarity 168 member A 2 2
MIRT478458 DAB2 DAB2, clathrin adaptor protein 2 2
MIRT478953 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT480096 CALR calreticulin 2 2
MIRT481924 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT483217 APOA1 apolipoprotein A1 2 6
MIRT483882 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483923 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483942 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484209 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT484512 SYT7 synaptotagmin 7 2 2
MIRT484709 RNF11 ring finger protein 11 2 2
MIRT485356 MYO1C myosin IC 2 4
MIRT485615 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT486584 ZNF619 zinc finger protein 619 2 2
MIRT487013 C2orf82 chromosome 2 open reading frame 82 2 2
MIRT487621 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487801 GPR20 G protein-coupled receptor 20 2 4
MIRT488134 GPR107 G protein-coupled receptor 107 2 2
MIRT488773 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT488854 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489783 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490102 FN3K fructosamine 3 kinase 2 2
MIRT490389 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT490434 MYL9 myosin light chain 9 2 2
MIRT490451 GLUD1 glutamate dehydrogenase 1 2 2
MIRT490880 OSBP oxysterol binding protein 2 2
MIRT491037 ALPK3 alpha kinase 3 2 2
MIRT491250 HCN2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 2 2
MIRT491748 SEMA3F semaphorin 3F 2 2
MIRT492235 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492490 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT492505 RANBP10 RAN binding protein 10 2 4
MIRT492773 PDGFB platelet derived growth factor subunit B 2 2
MIRT492922 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT493459 ITFG3 family with sequence similarity 234 member A 2 2
MIRT493654 HDLBP high density lipoprotein binding protein 2 2
MIRT494011 DUSP9 dual specificity phosphatase 9 2 2
MIRT499412 PLCG2 phospholipase C gamma 2 2 4
MIRT499552 C15orf43 telomere repeat binding bouquet formation protein 2 2 2
MIRT501836 NCOA2 nuclear receptor coactivator 2 2 2
MIRT501950 MAT2A methionine adenosyltransferase 2A 2 10
MIRT504066 KCTD12 potassium channel tetramerization domain containing 12 2 4
MIRT504509 PPP1R9B protein phosphatase 1 regulatory subunit 9B 2 2
MIRT508466 HOXB6 homeobox B6 2 4
MIRT512373 CPM carboxypeptidase M 2 2
MIRT513578 EVX1 even-skipped homeobox 1 2 2
MIRT517763 ZNF366 zinc finger protein 366 2 4
MIRT519773 ZNF354B zinc finger protein 354B 2 8
MIRT523568 GGCX gamma-glutamyl carboxylase 2 4
MIRT532802 CLDN11 claudin 11 2 2
MIRT544299 TSPYL1 TSPY like 1 2 2
MIRT544862 MYH2 myosin heavy chain 2 2 4
MIRT556731 KLHL15 kelch like family member 15 2 4
MIRT564347 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT568924 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT569012 CXorf36 chromosome X open reading frame 36 2 2
MIRT569256 FAM129B family with sequence similarity 129 member B 2 2
MIRT569591 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT569779 SAMD14 sterile alpha motif domain containing 14 2 2
MIRT570034 FAM228A family with sequence similarity 228 member A 2 2
MIRT573803 FRMPD4 FERM and PDZ domain containing 4 2 2
MIRT574190 ZNF264 zinc finger protein 264 2 2
MIRT576153 Hmox1 heme oxygenase 1 2 2
MIRT611311 CA8 carbonic anhydrase 8 2 4
MIRT673429 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT674976 SH3BP2 SH3 domain binding protein 2 2 2
MIRT692712 MEAF6 MYST/Esa1 associated factor 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-3179 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3179 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3179 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3179 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3179 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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