pre-miRNA Information
pre-miRNA hsa-mir-3179-1   
Genomic Coordinates chr16: 14901508 - 14901591
Description Homo sapiens miR-3179-1 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-2   
Genomic Coordinates chr16: 16300159 - 16300242
Description Homo sapiens miR-3179-2 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-3   
Genomic Coordinates chr16: 18411894 - 18411977
Description Homo sapiens miR-3179-3 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-4   
Genomic Coordinates chr16: 18494493 - 18494576
Description Homo sapiens miR-3179-4 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-3179
Sequence 52| AGAAGGGGUGAAAUUUAAACGU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1351100204 1 dbSNP
rs1398613616 4 dbSNP
rs1340262765 20 dbSNP
rs1229893475 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PDGFB   
Synonyms IBGC5, PDGF-2, PDGF2, SIS, SSV, c-sis
Description platelet derived growth factor subunit B
Transcript NM_002608   
Other Transcripts NM_033016   
Expression
Putative miRNA Targets on PDGFB
3'UTR of PDGFB
(miRNA target sites are highlighted)
>PDGFB|NM_002608|3'UTR
   1 GGGCATCGGCAGGAGAGTGTGTGGGCAGGGTTATTTAATATGGTATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGTGA
  81 TAATATTGTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCACCCCTCCACGTGTCC
 161 GTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTG
 241 AACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGG
 321 GGGAAACGGGCTCCTTCCCCTGCACCTGGCCTGGGCCACACCTGAGCGCTGTGGACTGTCCTGAGGAGCCCTGAGGACCT
 401 CTCAGCATAGCCTGCCTGATCCCTGAACCCCTGGCCAGCTCTGAGGGGAGGCACCTCCAGGCAGGCCAGGCTGCCTCGGA
 481 CTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGAAAACCCCTCCCACGGTGCCCAAACACCAGTCACCTCGTCT
 561 CCCTGGTGCCTCTGTGCACAGTGGCTTCTTTTCGTTTTCGTTTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCA
 641 CACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGGAGTTTGCTGTTGAGGTGGCTGTAGATGGTGACCTGGGTA
 721 TCCCCTGCCTCCTGCCACCCCTTCCTCCCCACACTCCACTCTGATTCACCTCTTCCTCTGGTTCCTTTCATCTCTCTACC
 801 TCCACCCTGCATTTTCCTCTTGTCCTGGCCCTTCAGTCTGCTCCACCAAGGGGCTCTTGAACCCCTTATTAAGGCCCCAG
 881 ATGATCCCAGTCACTCCTCTCTAGGGCAGAAGACTAGAGGCCAGGGCAGCAAGGGACCTGCTCATCATATTCCAACCCAG
 961 CCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTGTATGCAGGGAGCACTGTTCACATCATAGA
1041 TAAAGCTGATTTGTATATTTATTATGACAATTTCTGGCAGATGTAGGTAAAGAGGAAAAGGATCCTTTTCCTAATTCACA
1121 CAAAGACTCCTTGTGGACTGGCTGTGCCCCTGATGCAGCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTGTGGTAG
1201 GGGCAGGGAGGCAACACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCCTTCCAGGTGGG
1281 TGTGGGACACCTGGGAGAAGGTCTCCAAGGGAGGGTGCAGCCCTCTTGCCCGCACCCCTCCCTGCTTGCACACTTCCCCA
1361 TCTTTGATCCTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGGAATGGGGGAGAGAAGGG
1441 AAAAGATCCCCAAGACCCCCTGGGGTGGGATCTGAGCTCCCACCTCCCTTCCCACCTACTGCACTTTCCCCCTTCCCGCC
1521 TTCCAAAACCTGCTTCCTTCAGTTTGTAAAGTCGGTGATTATATTTTTGGGGGCTTTCCTTTTATTTTTTAAATGTAAAA
1601 TTTATTTATATTCCGTATTTAAAGTTGTAAAAAAAAATAACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCT
1681 GTTGGCATCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTGG
1761 GAGCCTCAGGCGTGATCTCACACACTGGCGTGCACATACACACACACACACATACATGCTCACACATGCGTGCACATACA
1841 CGCAGGCCTGCAACTTGGGGGAGGCCTCTGTCTGGCGGGAAGAAGAGACACACAGGCTACTCTGTTGGTCTTGGTCCTGG
1921 CACAGCTCCTGACACGTGGACTTGTGCGTGTCTCTGGCAGTGACGAGAGATGGGTTTCTGCAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugcaaauUUAAAGUGGGGAAGa 5'
                 | |||| ||||||| 
Target 5' ctactgcACTTTC-CCCCTTCc 3'
1496 - 1516 154.00 -13.60
2
miRNA  3' ugcaaauuuaaaGUGGGGAAGa 5'
                      ||||||||| 
Target 5' cctgcctcctgcCACCCCTTCc 3'
724 - 745 150.00 -15.70
3
miRNA  3' ugcAAAUUUAAAGUGGGGAAGa 5'
             | |:|  ||||||:|||| 
Target 5' cacTCTGA--TTCACCTCTTCc 3'
757 - 776 147.00 -15.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30174048 15 COSMIC
COSN26988468 29 COSMIC
COSN26676886 584 COSMIC
COSN17205571 753 COSMIC
COSN28721478 1074 COSMIC
COSN31480235 1153 COSMIC
COSN25621559 1301 COSMIC
COSN8010642 1714 COSMIC
COSN31541620 1838 COSMIC
COSN195841 1855 COSMIC
COSN15143356 1996 COSMIC
COSN22743869 2142 COSMIC
COSN23298665 2179 COSMIC
COSN22816794 2218 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs561416142 3 dbSNP
rs981301208 5 dbSNP
rs371093482 7 dbSNP
rs777795315 8 dbSNP
rs756089480 14 dbSNP
rs748069691 18 dbSNP
rs759500840 18 dbSNP
rs112161712 24 dbSNP
rs1214311156 24 dbSNP
rs35677215 24 dbSNP
rs780878814 26 dbSNP
rs767510063 29 dbSNP
rs762083194 31 dbSNP
rs1013044523 32 dbSNP
rs1413748906 34 dbSNP
rs754733832 38 dbSNP
rs1472181809 41 dbSNP
rs751182414 42 dbSNP
rs1190291115 44 dbSNP
rs998981833 45 dbSNP
rs1420175360 46 dbSNP
rs766203105 49 dbSNP
rs1462411893 63 dbSNP
rs1159158277 70 dbSNP
rs966878286 90 dbSNP
rs1318505596 95 dbSNP
rs1387093035 100 dbSNP
rs1400019806 100 dbSNP
rs893124174 117 dbSNP
rs1385837484 119 dbSNP
rs1345372160 129 dbSNP
rs73163483 132 dbSNP
rs376341574 139 dbSNP
rs372771307 142 dbSNP
rs903451711 143 dbSNP
rs140728550 148 dbSNP
rs113867122 149 dbSNP
rs560772981 151 dbSNP
rs934167339 153 dbSNP
rs1206634004 157 dbSNP
rs796684130 162 dbSNP
rs1284743736 164 dbSNP
rs1049672008 167 dbSNP
rs996710924 168 dbSNP
rs1038742833 173 dbSNP
rs150194218 175 dbSNP
rs908854981 178 dbSNP
rs1181564857 180 dbSNP
rs112181258 183 dbSNP
rs1286872348 184 dbSNP
rs939842602 185 dbSNP
rs1159490090 190 dbSNP
rs908650721 213 dbSNP
rs1413553354 216 dbSNP
rs1048457267 218 dbSNP
rs1310628308 221 dbSNP
rs931346983 228 dbSNP
rs1376911287 234 dbSNP
rs1414817402 235 dbSNP
rs534604005 236 dbSNP
rs764704653 239 dbSNP
rs1333877471 242 dbSNP
rs929175446 249 dbSNP
rs1353584778 250 dbSNP
rs915908774 257 dbSNP
rs1279907798 261 dbSNP
rs376212159 270 dbSNP
rs151060753 271 dbSNP
rs1344119333 272 dbSNP
rs1231812176 282 dbSNP
rs549040982 286 dbSNP
rs13306691 293 dbSNP
rs981799395 300 dbSNP
rs928846004 307 dbSNP
rs1440049326 310 dbSNP
rs971217377 315 dbSNP
rs1022827696 325 dbSNP
rs1295112205 329 dbSNP
rs978003830 339 dbSNP
rs1430018354 341 dbSNP
rs967557691 342 dbSNP
rs530084247 343 dbSNP
rs569883130 345 dbSNP
rs1434991952 348 dbSNP
rs1021146054 357 dbSNP
rs1320143175 365 dbSNP
rs185910804 368 dbSNP
rs1393062971 376 dbSNP
rs1329379360 377 dbSNP
rs957453592 380 dbSNP
rs1438376549 382 dbSNP
rs1010652101 385 dbSNP
rs7289923 386 dbSNP
rs998868362 391 dbSNP
rs1228023438 398 dbSNP
rs1249688262 401 dbSNP
rs1341482219 404 dbSNP
rs1196471473 407 dbSNP
rs1364998289 425 dbSNP
rs559674415 427 dbSNP
rs1164498730 433 dbSNP
rs1267216837 455 dbSNP
rs1467551370 463 dbSNP
rs1195857371 466 dbSNP
rs1254074703 467 dbSNP
rs1454436694 468 dbSNP
rs1192110261 469 dbSNP
rs1370987389 473 dbSNP
rs1463018902 474 dbSNP
rs546709987 475 dbSNP
rs1168011964 477 dbSNP
rs528462482 478 dbSNP
rs996444841 481 dbSNP
rs1029903847 482 dbSNP
rs1371546740 484 dbSNP
rs1475911970 486 dbSNP
rs998419687 490 dbSNP
rs900000030 491 dbSNP
rs1264977364 500 dbSNP
rs1039864398 502 dbSNP
rs1216161786 503 dbSNP
rs901112010 506 dbSNP
rs1489661140 507 dbSNP
rs1185156957 509 dbSNP
rs1267530403 511 dbSNP
rs1259169083 512 dbSNP
rs1019479012 513 dbSNP
rs1004478413 514 dbSNP
rs886946616 520 dbSNP
rs375005433 525 dbSNP
rs865915868 527 dbSNP
rs1166929778 531 dbSNP
rs1395148682 532 dbSNP
rs1456466667 535 dbSNP
rs894522596 536 dbSNP
rs887538300 538 dbSNP
rs1383039289 541 dbSNP
rs1055820114 542 dbSNP
rs1424505623 549 dbSNP
rs561097870 553 dbSNP
rs111539034 557 dbSNP
rs1271893865 559 dbSNP
rs1434176708 560 dbSNP
rs1345024604 562 dbSNP
rs928899802 575 dbSNP
rs142149703 580 dbSNP
rs1406773747 581 dbSNP
rs946246356 582 dbSNP
rs918957925 585 dbSNP
rs56300558 587 dbSNP
rs1189477438 590 dbSNP
rs1410908345 601 dbSNP
rs1422055735 609 dbSNP
rs1156640937 617 dbSNP
rs1171388731 621 dbSNP
rs1480388971 622 dbSNP
rs1192836561 623 dbSNP
rs1045658509 624 dbSNP
rs1199518191 630 dbSNP
rs1416645365 631 dbSNP
rs777149868 632 dbSNP
rs115727092 647 dbSNP
rs1230846856 649 dbSNP
rs17000897 655 dbSNP
rs991337979 658 dbSNP
rs1438228608 662 dbSNP
rs1274837078 663 dbSNP
rs957802600 671 dbSNP
rs764439213 672 dbSNP
rs926065653 684 dbSNP
rs975077845 692 dbSNP
rs1279108992 696 dbSNP
rs1283780955 700 dbSNP
rs745591450 701 dbSNP
rs761111970 708 dbSNP
rs964996806 709 dbSNP
rs3203596 712 dbSNP
rs577959875 718 dbSNP
rs1004126702 719 dbSNP
rs886993082 720 dbSNP
rs1419389365 728 dbSNP
rs183030207 731 dbSNP
rs1297859827 738 dbSNP
rs995721834 744 dbSNP
rs775716108 745 dbSNP
rs114630100 748 dbSNP
rs145279167 749 dbSNP
rs1354067572 753 dbSNP
rs1440639643 758 dbSNP
rs1300360726 768 dbSNP
rs1018358988 773 dbSNP
rs774669499 779 dbSNP
rs1407491579 786 dbSNP
rs1386528762 797 dbSNP
rs116011535 800 dbSNP
rs1042395713 803 dbSNP
rs1405128243 806 dbSNP
rs946326809 826 dbSNP
rs190810375 828 dbSNP
rs1234185489 832 dbSNP
rs990347665 834 dbSNP
rs1201547184 835 dbSNP
rs112869822 845 dbSNP
rs1263711250 850 dbSNP
rs1205449184 858 dbSNP
rs748483053 865 dbSNP
rs139775423 866 dbSNP
rs975131957 867 dbSNP
rs1306368292 878 dbSNP
rs115714565 883 dbSNP
rs1455732958 884 dbSNP
rs1194571981 885 dbSNP
rs1019287293 889 dbSNP
rs1419094175 890 dbSNP
rs1408231394 893 dbSNP
rs982818169 896 dbSNP
rs1375806838 907 dbSNP
rs565859932 914 dbSNP
rs949923478 915 dbSNP
rs915831979 919 dbSNP
rs1373736744 922 dbSNP
rs1442108033 928 dbSNP
rs1383944073 932 dbSNP
rs73424751 937 dbSNP
rs1212256625 938 dbSNP
rs185652326 938 dbSNP
rs1213050539 942 dbSNP
rs925816768 948 dbSNP
rs181373913 950 dbSNP
rs1469592899 959 dbSNP
rs567660959 962 dbSNP
rs549059250 963 dbSNP
rs1188341029 974 dbSNP
rs530957505 975 dbSNP
rs55708806 980 dbSNP
rs1163322393 981 dbSNP
rs1400722425 989 dbSNP
rs1409734750 991 dbSNP
rs1041721477 992 dbSNP
rs1010625385 1006 dbSNP
rs964230701 1010 dbSNP
rs1018474018 1016 dbSNP
rs1428273682 1017 dbSNP
rs1271414283 1020 dbSNP
rs545232457 1027 dbSNP
rs1340662716 1041 dbSNP
rs893417754 1043 dbSNP
rs1243505345 1045 dbSNP
rs1185404981 1047 dbSNP
rs1291309956 1048 dbSNP
rs1336901637 1051 dbSNP
rs533328919 1052 dbSNP
rs149665155 1061 dbSNP
rs559663878 1067 dbSNP
rs56380606 1082 dbSNP
rs952892848 1086 dbSNP
rs56133813 1087 dbSNP
rs1216607910 1094 dbSNP
rs1185924087 1097 dbSNP
rs897586640 1099 dbSNP
rs114967981 1100 dbSNP
rs369900992 1108 dbSNP
rs555346802 1121 dbSNP
rs1245483464 1126 dbSNP
rs1062604 1133 dbSNP
rs150532025 1135 dbSNP
rs894179167 1143 dbSNP
rs1380816418 1166 dbSNP
rs753875374 1179 dbSNP
rs1413589127 1185 dbSNP
rs1357268452 1187 dbSNP
rs1245508746 1195 dbSNP
rs1055714953 1200 dbSNP
rs570286244 1210 dbSNP
rs943794600 1212 dbSNP
rs189350725 1216 dbSNP
rs1289911767 1223 dbSNP
rs912277454 1225 dbSNP
rs904329000 1230 dbSNP
rs1347465823 1231 dbSNP
rs1208777511 1232 dbSNP
rs1430861203 1243 dbSNP
rs111790899 1251 dbSNP
rs557861351 1259 dbSNP
rs1041962162 1261 dbSNP
rs1346422010 1264 dbSNP
rs1062605 1266 dbSNP
rs946114568 1270 dbSNP
rs982480418 1277 dbSNP
rs1231672826 1282 dbSNP
rs539510494 1284 dbSNP
rs976840544 1287 dbSNP
rs942701938 1292 dbSNP
rs951103505 1297 dbSNP
rs376708509 1300 dbSNP
rs1423468962 1308 dbSNP
rs1385715605 1314 dbSNP
rs879334511 1314 dbSNP
rs919875483 1315 dbSNP
rs1376817488 1318 dbSNP
rs1396112728 1319 dbSNP
rs973982059 1324 dbSNP
rs1426720790 1325 dbSNP
rs1444053467 1326 dbSNP
rs1309761511 1335 dbSNP
rs910289864 1336 dbSNP
rs984376008 1343 dbSNP
rs1260746722 1345 dbSNP
rs1282554335 1346 dbSNP
rs1345721899 1360 dbSNP
rs1195311482 1362 dbSNP
rs958560831 1363 dbSNP
rs1440098369 1365 dbSNP
rs1179629284 1366 dbSNP
rs565881946 1367 dbSNP
rs953090001 1372 dbSNP
rs1191291379 1373 dbSNP
rs1486947463 1374 dbSNP
rs1267061022 1378 dbSNP
rs1466061880 1390 dbSNP
rs13306692 1397 dbSNP
rs1394207936 1401 dbSNP
rs1221763790 1406 dbSNP
rs551968402 1408 dbSNP
rs766414363 1426 dbSNP
rs1360257484 1434 dbSNP
rs1393544098 1435 dbSNP
rs973313076 1436 dbSNP
rs961785882 1439 dbSNP
rs1161648665 1442 dbSNP
rs1024052082 1444 dbSNP
rs1268543549 1450 dbSNP
rs535741666 1451 dbSNP
rs1307467488 1462 dbSNP
rs115948772 1463 dbSNP
rs372071162 1466 dbSNP
rs544727242 1469 dbSNP
rs971524662 1477 dbSNP
rs768465506 1478 dbSNP
rs1433448854 1482 dbSNP
rs1191817118 1486 dbSNP
rs746886544 1495 dbSNP
rs893125532 1497 dbSNP
rs779680725 1511 dbSNP
rs139395282 1526 dbSNP
rs1370897407 1529 dbSNP
rs569842306 1533 dbSNP
rs904442650 1534 dbSNP
rs758118950 1539 dbSNP
rs1393659150 1542 dbSNP
rs1365643248 1543 dbSNP
rs55680074 1550 dbSNP
rs13306693 1553 dbSNP
rs1327703081 1562 dbSNP
rs1391697772 1564 dbSNP
rs1381925241 1565 dbSNP
rs1316308023 1569 dbSNP
rs369474309 1569 dbSNP
rs1328207453 1573 dbSNP
rs945863279 1579 dbSNP
rs1293165041 1591 dbSNP
rs1333382281 1605 dbSNP
rs901054682 1607 dbSNP
rs750098260 1609 dbSNP
rs944839745 1616 dbSNP
rs577557700 1618 dbSNP
rs1266451525 1623 dbSNP
rs1488593934 1624 dbSNP
rs533236818 1625 dbSNP
rs1170818048 1626 dbSNP
rs559908506 1633 dbSNP
rs1259235043 1648 dbSNP
rs942817201 1660 dbSNP
rs1193779366 1662 dbSNP
rs1417023458 1663 dbSNP
rs1047232536 1671 dbSNP
rs1166634834 1673 dbSNP
rs1427374953 1676 dbSNP
rs911193075 1678 dbSNP
rs1452795999 1680 dbSNP
rs929696180 1682 dbSNP
rs984547190 1688 dbSNP
rs1271107314 1691 dbSNP
rs931542401 1692 dbSNP
rs919576786 1695 dbSNP
rs918841791 1697 dbSNP
rs973699055 1712 dbSNP
rs541221852 1713 dbSNP
rs927171460 1714 dbSNP
rs9611112 1726 dbSNP
rs1316627591 1735 dbSNP
rs992562517 1737 dbSNP
rs958464262 1742 dbSNP
rs113380163 1751 dbSNP
rs1283108610 1752 dbSNP
rs971618604 1762 dbSNP
rs1484648757 1766 dbSNP
rs1183459600 1767 dbSNP
rs1418243439 1770 dbSNP
rs1345794841 1781 dbSNP
rs968448005 1782 dbSNP
rs1382376734 1793 dbSNP
rs1302711456 1794 dbSNP
rs1389199269 1795 dbSNP
rs1020619506 1797 dbSNP
rs1020405677 1799 dbSNP
rs1467649210 1805 dbSNP
rs989293215 1808 dbSNP
rs1395610087 1811 dbSNP
rs9611111 1812 dbSNP
rs1378625016 1814 dbSNP
rs1240510575 1816 dbSNP
rs1279169339 1827 dbSNP
rs1032974699 1828 dbSNP
rs9611110 1831 dbSNP
rs576125938 1832 dbSNP
rs1480293112 1834 dbSNP
rs1175247034 1836 dbSNP
rs1006905681 1838 dbSNP
rs80174093 1839 dbSNP
rs1009092407 1849 dbSNP
rs139014623 1851 dbSNP
rs1434931691 1854 dbSNP
rs918633564 1868 dbSNP
rs1354431085 1872 dbSNP
rs577783906 1874 dbSNP
rs1333784499 1879 dbSNP
rs949643141 1881 dbSNP
rs1440646035 1889 dbSNP
rs1302176725 1899 dbSNP
rs918068488 1909 dbSNP
rs56031201 1914 dbSNP
rs958412100 1915 dbSNP
rs555216272 1926 dbSNP
rs978574743 1930 dbSNP
rs111299100 1934 dbSNP
rs774720279 1935 dbSNP
rs1259915463 1940 dbSNP
rs1457997314 1949 dbSNP
rs1257404709 1960 dbSNP
rs1251330427 1968 dbSNP
rs1479151502 1972 dbSNP
rs1191822105 1978 dbSNP
rs1418965484 1982 dbSNP
rs149134987 1982 dbSNP
rs1425002358 1985 dbSNP
rs1236165672 1995 dbSNP
rs981353053 1996 dbSNP
rs1347737781 2005 dbSNP
rs1010079975 2010 dbSNP
rs1293598222 2010 dbSNP
rs1019366831 2019 dbSNP
rs965283075 2019 dbSNP
rs1006685000 2022 dbSNP
rs1307153872 2029 dbSNP
rs1318556429 2030 dbSNP
rs574711154 2030 dbSNP
rs1232420114 2036 dbSNP
rs949947817 2038 dbSNP
rs138167315 2046 dbSNP
rs988620631 2047 dbSNP
rs537720079 2049 dbSNP
rs1335786075 2050 dbSNP
rs995626591 2054 dbSNP
rs897132815 2057 dbSNP
rs1264496094 2060 dbSNP
rs1475197848 2061 dbSNP
rs185985397 2070 dbSNP
rs1416497822 2071 dbSNP
rs1033026023 2074 dbSNP
rs1037046540 2075 dbSNP
rs569730455 2078 dbSNP
rs1344257497 2084 dbSNP
rs918182476 2086 dbSNP
rs1453391186 2095 dbSNP
rs1364434341 2096 dbSNP
rs1180631786 2100 dbSNP
rs1055421105 2110 dbSNP
rs1282207036 2111 dbSNP
rs1443278797 2111 dbSNP
rs1243092893 2114 dbSNP
rs938158608 2116 dbSNP
rs964665906 2120 dbSNP
rs773159088 2121 dbSNP
rs947171240 2123 dbSNP
rs1009557570 2124 dbSNP
rs1349559657 2138 dbSNP
rs988437449 2150 dbSNP
rs372905348 2152 dbSNP
rs369326993 2159 dbSNP
rs539928330 2160 dbSNP
rs1357119581 2162 dbSNP
rs1159915703 2166 dbSNP
rs985380208 2167 dbSNP
rs953992298 2170 dbSNP
rs1332058381 2171 dbSNP
rs536824830 2178 dbSNP
rs898261153 2180 dbSNP
rs1448443202 2185 dbSNP
rs1415903502 2186 dbSNP
rs372664539 2188 dbSNP
rs995965506 2192 dbSNP
rs1013586831 2194 dbSNP
rs1015570150 2194 dbSNP
rs1287020432 2194 dbSNP
rs368848139 2194 dbSNP
rs556251300 2194 dbSNP
rs897243218 2194 dbSNP
rs1231584072 2196 dbSNP
rs538029955 2196 dbSNP
rs572598972 2196 dbSNP
rs938272793 2197 dbSNP
rs1380552898 2198 dbSNP
rs1453227838 2200 dbSNP
rs1170340002 2202 dbSNP
rs937029605 2218 dbSNP
rs1404239750 2222 dbSNP
rs905517956 2223 dbSNP
rs1327938349 2225 dbSNP
rs114450038 2231 dbSNP
rs150422172 2233 dbSNP
rs779991195 2234 dbSNP
rs989061611 2236 dbSNP
rs935821403 2239 dbSNP
rs988553926 2241 dbSNP
rs943703069 2242 dbSNP
rs926065845 2244 dbSNP
rs554233872 2245 dbSNP
rs1459334024 2249 dbSNP
rs1446019363 2252 dbSNP
rs985327858 2255 dbSNP
rs762461961 2256 dbSNP
rs1450732963 2257 dbSNP
rs141664924 2258 dbSNP
rs1378931387 2262 dbSNP
rs911902288 2268 dbSNP
rs1290475854 2275 dbSNP
rs1478073738 2276 dbSNP
rs550508821 2280 dbSNP
rs1358432077 2281 dbSNP
rs147603621 2287 dbSNP
rs1466952676 2293 dbSNP
rs961540338 2303 dbSNP
rs372645163 2305 dbSNP
rs1327185389 2306 dbSNP
rs117787066 2316 dbSNP
rs1026538693 2317 dbSNP
rs1331684117 2320 dbSNP
rs1226802333 2321 dbSNP
rs1276816344 2322 dbSNP
rs1300280815 2324 dbSNP
rs745591501 2325 dbSNP
rs1355209415 2326 dbSNP
rs1269040373 2329 dbSNP
rs367772860 2345 dbSNP
rs1365018585 2346 dbSNP
rs1002846083 2348 dbSNP
rs904106565 2349 dbSNP
rs1478788933 2355 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugcaaauuuAAAGUGGGGAAGa 5'
                   |||| ||||||| 
Target 5' ---------UUUC-CCCCUUCc 3'
1 - 12
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000331163.6 | 3UTR | UUUCCCCCUUCCCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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133 hsa-miR-3179 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102087 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT110061 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 6
MIRT112198 BTG2 BTG anti-proliferation factor 2 2 2
MIRT117668 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT146657 MINK1 misshapen like kinase 1 2 2
MIRT175505 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT180535 TXNIP thioredoxin interacting protein 2 2
MIRT190624 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT190650 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT366902 NONO non-POU domain containing octamer binding 2 2
MIRT443554 ZFP3 ZFP3 zinc finger protein 2 2
MIRT445953 MLLT11 MLLT11, transcription factor 7 cofactor 2 2
MIRT446042 HMCN1 hemicentin 1 2 2
MIRT447968 MSH6 mutS homolog 6 2 2
MIRT448634 ONECUT1 one cut homeobox 1 2 2
MIRT449316 MRO maestro 2 2
MIRT451380 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451547 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451807 CDCA3 cell division cycle associated 3 2 4
MIRT451916 ILK integrin linked kinase 2 2
MIRT451938 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452189 KIAA1456 KIAA1456 2 2
MIRT452498 HMGXB3 HMG-box containing 3 2 2
MIRT452548 ZNF467 zinc finger protein 467 2 2
MIRT453844 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT454515 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT455363 KDM5C lysine demethylase 5C 2 2
MIRT455455 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT455628 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 10
MIRT455639 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 10
MIRT455690 GLO1 glyoxalase I 2 2
MIRT456300 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT456784 MTHFSD methenyltetrahydrofolate synthetase domain containing 2 2
MIRT456819 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT457566 ZNF34 zinc finger protein 34 2 2
MIRT457604 IDS iduronate 2-sulfatase 2 2
MIRT458236 NXPH3 neurexophilin 3 2 2
MIRT458313 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458350 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458670 GPR35 G protein-coupled receptor 35 2 2
MIRT459675 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT461126 RAB36 RAB36, member RAS oncogene family 2 2
MIRT461918 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462301 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463520 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT464378 URM1 ubiquitin related modifier 1 2 2
MIRT464614 UBE4B ubiquitination factor E4B 2 2
MIRT464711 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465520 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465974 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466058 TMEM189 transmembrane protein 189 2 2
MIRT466548 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT466647 TAGLN2 transgelin 2 2 2
MIRT467357 SP2 Sp2 transcription factor 2 2
MIRT468744 SDC2 syndecan 2 2 2
MIRT470244 PRRC2A proline rich coiled-coil 2A 2 2
MIRT471426 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471732 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472190 NHP2L1 small nuclear ribonucleoprotein 13 2 2
MIRT472450 NAV2 neuron navigator 2 2 6
MIRT474563 KLHDC3 kelch domain containing 3 2 2
MIRT474936 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475165 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475399 ICMT isoprenylcysteine carboxyl methyltransferase 2 4
MIRT475426 ICK intestinal cell kinase 2 2
MIRT477090 FAM168A family with sequence similarity 168 member A 2 2
MIRT478458 DAB2 DAB2, clathrin adaptor protein 2 2
MIRT478953 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT480096 CALR calreticulin 2 2
MIRT481924 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT483217 APOA1 apolipoprotein A1 2 6
MIRT483882 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483923 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483942 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484209 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT484512 SYT7 synaptotagmin 7 2 2
MIRT484709 RNF11 ring finger protein 11 2 2
MIRT485356 MYO1C myosin IC 2 4
MIRT485615 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT486584 ZNF619 zinc finger protein 619 2 2
MIRT487013 C2orf82 chromosome 2 open reading frame 82 2 2
MIRT487621 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487801 GPR20 G protein-coupled receptor 20 2 4
MIRT488134 GPR107 G protein-coupled receptor 107 2 2
MIRT488773 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT488854 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489783 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490102 FN3K fructosamine 3 kinase 2 2
MIRT490389 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT490434 MYL9 myosin light chain 9 2 2
MIRT490451 GLUD1 glutamate dehydrogenase 1 2 2
MIRT490880 OSBP oxysterol binding protein 2 2
MIRT491037 ALPK3 alpha kinase 3 2 2
MIRT491250 HCN2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 2 2
MIRT491748 SEMA3F semaphorin 3F 2 2
MIRT492235 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492490 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT492505 RANBP10 RAN binding protein 10 2 4
MIRT492773 PDGFB platelet derived growth factor subunit B 2 2
MIRT492922 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT493459 ITFG3 family with sequence similarity 234 member A 2 2
MIRT493654 HDLBP high density lipoprotein binding protein 2 2
MIRT494011 DUSP9 dual specificity phosphatase 9 2 2
MIRT499412 PLCG2 phospholipase C gamma 2 2 4
MIRT499552 C15orf43 telomere repeat binding bouquet formation protein 2 2 2
MIRT501836 NCOA2 nuclear receptor coactivator 2 2 2
MIRT501950 MAT2A methionine adenosyltransferase 2A 2 10
MIRT504066 KCTD12 potassium channel tetramerization domain containing 12 2 4
MIRT504509 PPP1R9B protein phosphatase 1 regulatory subunit 9B 2 2
MIRT508466 HOXB6 homeobox B6 2 4
MIRT512373 CPM carboxypeptidase M 2 2
MIRT513578 EVX1 even-skipped homeobox 1 2 2
MIRT517763 ZNF366 zinc finger protein 366 2 4
MIRT519773 ZNF354B zinc finger protein 354B 2 8
MIRT523568 GGCX gamma-glutamyl carboxylase 2 4
MIRT532802 CLDN11 claudin 11 2 2
MIRT544299 TSPYL1 TSPY like 1 2 2
MIRT544862 MYH2 myosin heavy chain 2 2 4
MIRT556731 KLHL15 kelch like family member 15 2 4
MIRT564347 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT568924 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT569012 CXorf36 chromosome X open reading frame 36 2 2
MIRT569256 FAM129B family with sequence similarity 129 member B 2 2
MIRT569591 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT569779 SAMD14 sterile alpha motif domain containing 14 2 2
MIRT570034 FAM228A family with sequence similarity 228 member A 2 2
MIRT573803 FRMPD4 FERM and PDZ domain containing 4 2 2
MIRT574190 ZNF264 zinc finger protein 264 2 2
MIRT576153 Hmox1 heme oxygenase 1 2 2
MIRT611311 CA8 carbonic anhydrase 8 2 4
MIRT673429 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT674976 SH3BP2 SH3 domain binding protein 2 2 2
MIRT692712 MEAF6 MYST/Esa1 associated factor 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-3179 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3179 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3179 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3179 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3179 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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