miRTarBase - #MIRT493365


—
pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KIF5B   
Synonyms HEL-S-61, KINH, KNS, KNS1, UKHC
Description kinesin family member 5B
Transcript NM_004521   
Expression
Putative miRNA Targets on KIF5B
3'UTR of KIF5B
(miRNA target sites are highlighted)		 
>KIF5B|NM_004521|3'UTR
   1 TCGTTTATACATACCCACAGGTGTTAAAAAGTAATCGAAGTACGAAGAGGACATGGTATCAAGCAGTCATTCAATGACTA
  81 TAACCTCTACTCCCTTGGGATTGTAGAATTATAACTTTTAAAAAAAATGTATAAATTATACCTGGCCTGTACAGCTGTTT
 161 CCTACCTACTCTTCTTGTAAACTCTGCTGCTTCCCAACACAACTAGAGTGCAATTTTGGCATCTTAGGAGGGAAAAAGGA
 241 CAGTTTACAACTGTGGCCCTATTTATTACACAGTTTGTCTATCGTGTCTTAAATTTAGTCTTTACTGTGCCAAGCTAACT
 321 GTACCTTATAGGACTGTACTTTTTGTATTTTTTGTGTATGTTTATTTTTTAATCTCAGTTTAAATTACCTAGCTGCTACT
 401 GCTTCTTGTTTTTCTTTTCCTATTAAAACGTCTTCCTTTTTTTTTCTTAAGAGAAAATGGAACATTTAGGTTAAATGTCT
 481 TTAAATTTTACCACTTAACAACACTACATGCCCATAAAATATATCCAGTCAGTACTGTATTTTAAAATCCCTTGAAATGA
 561 TGATATCAGGGTTAAAATTACTTGTATTGTTTCTGAAGTTTGCTCCTGAAAACTACTGTTTGAGCACTGAAACGTTACAA
 641 ATGCCTAATAGGCATTTGAGACTGAGCAAGGCTACTTGTTATCTCATGAAATGCCTGTTGCCGAGTTATTTTGAATAGAA
 721 ATATTTTAAAGTATCAAAAGCAGATCTTAGTTTAAGGGAGTTTGGAAAAGGAATTATATTTCTCTTTTTCCTGATTCTGT
 801 ACTCAACAAGTCTTGATGGAATTAAAATACTCTGCTTTATTCTGGTGAGCCTGCTAGCTAATATAAGTATTGGACAGGTA
 881 ATAATTTGTCATCTTTAATATTAGTAAAATGAATTAAGATATTATAGGATTAAACATAATTTTATACGGTTAGTACTTTA
 961 TTGGCCGACCTAAATTTATAGCGTGTGGAAATTGAGAAAAATGAAGAAACAGGACAGATATATGATGAATTAAAAATATA
1041 TATAGGTCAATTTTGGTCTGAAATCCCTGAGGTGTTTTTAACCTGCTACACTAATTTGTACACTAATTTATTTCTTTAGT
1121 CTAGAAATAGTAAATTGTTTGCAAGTCACTAATAATCATTAGATAAATTATTTTCTTGGCCATAGCCGATAATTTTGTAA
1201 TCAGTACTAAGTGTATACGTATTTTTGCCACTTTTTCCTCAGATGATTAAAGTAAGTCAACAGCTTATTTTAGGAAACTG
1281 TAAAAGTAATAGGGAAAGAGATTTCACTATTTGCTTCATCAGTGGTAGGGGGGCGGTGACTGCAACTGTGTTAGCAGAAA
1361 TTCACAGAGAATGGGGATTTAAGGTTAGCAGAGAAACTTGGAAAGTTCTGTGTTAGGATCTTGCTGGCAGAATTAACTTT
1441 TTGCAAAAGTTTTATACACAGATATTTGTATTAAATTTGGAGCCATAGTCAGAAGACTCAGATCATAATTGGCTTATTTT
1521 TCTATTTCCGTAACTATTGTAATTTCCACTTTTGTAATAATTTTGATTTAAAATATAAATTTATTTATTTATTTTTTTAA
1601 TAGTCAAAAATCTTTGCTGTTGTAGTCTGCAACCTCTAAAATGATTGTGTTGCTTTTAGGATTGATCAGAAGAAACACTC
1681 CAAAAATTGAGATGAAATGTTGGTGCAGCCAGTTATAAGTAATATAGTTAACAAGCAAAAAAAGTGCTGCCACCTTTTAT
1761 GATGATTTTCTAAATGGAGAAACATTTGGCTGCATCCACATAGACCTTTATGTTTTGTTTTCAGTTGAAAACTTGCCTCC
1841 TTTGGCAACATTCGTAAATGAAGCAGAATTTTTTTTTCTCTTTTTTCCAAATATGTTAGTTTTGTTCTTGTAAGATGTAT
1921 CATGGGTATTGGTGCTGTGTAATGAACAACGAATTTTAATTAGCATGTGGTTCAGAATATACAATGTTAGGTTTTTAAAA
2001 AGTATCTTGATGGTTCTTTTCTATTTATAATTTCAGACTTTCATAAAGTGTACCAAGAATTTCATAAATTTGTTTTCAGT
2081 GAACTGCTTTTTGCTATGGTAGGTCATTAAACACAGCACTTACTCTTAAAAATGAAAATTTCTGATCATCTAGGATATTG
2161 ACACATTTCAATTTGCAGTGTCTTTTTGACTGGATATATTAACGTTCCTCTGAATGGCATTGATAGATGGTTCAGAAGAG
2241 AAACTCAATGAAATAAAGAGAATATTTATTCATGGCGATTAATTAAATTATTTGCCTAACTTAAGAAAACTACTGTGCGT
2321 AACTCTCAGTTTGTGCTTAACTCCATTTGACATGAGGTGACAGAAGAGAGTCTGAGTCTACCTGTGGAATATGTTGGTTT
2401 ATTTTCAGTGCTTGAAGATACATTCACAAATACTTGGTTTGGGAAGACACCGTTTAATTTTAAGTTAACTTGCATGTTGT
2481 AAATGCGTTTTATGTTTAAATAAAGAGGAAAATTTTTTGAAATGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGACCUACG--UUUAAAAu 5'
            ||   |||  ||:|||| 
Target 5' aaCTTTTTGCAAAAGTTTTa 3'
 1435 - 1454 130.00 -5.60
2 
miRNA  3' agGAC-C--UAC-----GUUUAAAAu 5'
            ||| |  |||     |:|||||| 
Target 5' tgCTGTGTAATGAACAACGAATTTTa 3'
 1933 - 1958 130.00 -6.90
3 
miRNA  3' agGAC-CUACGUUUAAAAu 5'
            :|| |||| |||| || 
Target 5' aaTTGAGATG-AAATGTTg 3'
 1685 - 1702 123.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1118096 6 COSMIC
COSN1118095 34 COSMIC
COSN30608556 117 COSMIC
COSN17284268 128 COSMIC
COSN16397923 133 COSMIC
COSN30658437 175 COSMIC
COSN1486057 187 COSMIC
COSN5284583 279 COSMIC
COSN9204925 421 COSMIC
COSN23365921 959 COSMIC
COSN29112439 978 COSMIC
COSN29490360 1061 COSMIC
COSN25796285 1097 COSMIC
COSN9204924 1910 COSMIC
COSN20777549 1986 COSMIC
COSN9204923 2201 COSMIC
COSN6966993 2359 COSMIC
COSN1486056 2532 COSMIC
COSN27239469 2610 COSMIC
COSN22977765 3317 COSMIC
COSN29008020 3589 COSMIC
COSN19460684 3987 COSMIC
COSN31529321 4028 COSMIC
COSN31551477 4035 COSMIC
COSN20107023 4042 COSMIC
COSN24953997 4042 COSMIC
COSN30540906 4092 COSMIC
COSN22247236 4112 COSMIC
COSN31551342 4149 COSMIC
COSN26640959 4313 COSMIC
COSN29686989 4428 COSMIC
COSN16492367 4632 COSMIC
COSN6068846 4695 COSMIC
COSN25694495 4824 COSMIC
COSN29211536 5192 COSMIC
COSN15359415 6060 COSMIC
COSN25192455 6204 COSMIC
COSN17613700 6242 COSMIC
COSN17612504 6278 COSMIC
COSN10066087 6442 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1174397943 2 dbSNP
rs749267836 2 dbSNP
rs1352651361 3 dbSNP
rs201874978 5 dbSNP
rs755872429 7 dbSNP
rs1342732794 10 dbSNP
rs1331618966 15 dbSNP
rs1350029091 16 dbSNP
rs11539713 17 dbSNP
rs752049537 17 dbSNP
rs1406871986 19 dbSNP
rs1358679591 29 dbSNP
rs1233254639 36 dbSNP
rs754715270 36 dbSNP
rs1401501412 46 dbSNP
rs751006235 49 dbSNP
rs1231925652 53 dbSNP
rs1330643753 69 dbSNP
rs1204156125 78 dbSNP
rs756563235 87 dbSNP
rs1286349070 92 dbSNP
rs1465905796 98 dbSNP
rs1279582083 100 dbSNP
rs569386112 103 dbSNP
rs551287583 105 dbSNP
rs1197053008 109 dbSNP
rs1268016286 114 dbSNP
rs923427440 115 dbSNP
rs541699828 116 dbSNP
rs1333593517 117 dbSNP
rs1469725134 118 dbSNP
rs1325360088 125 dbSNP
rs1159341606 130 dbSNP
rs1441350403 137 dbSNP
rs1362712725 138 dbSNP
rs757449614 139 dbSNP
rs1423085379 143 dbSNP
rs956451157 148 dbSNP
rs1389020440 155 dbSNP
rs1055055936 157 dbSNP
rs1333455669 159 dbSNP
rs1237734135 164 dbSNP
rs937804168 172 dbSNP
rs1376100876 176 dbSNP
rs1219908565 181 dbSNP
rs188811574 183 dbSNP
rs1410289250 185 dbSNP
rs768173987 190 dbSNP
rs1000501651 192 dbSNP
rs1248390419 194 dbSNP
rs1418525325 198 dbSNP
rs182913371 205 dbSNP
rs1443022785 209 dbSNP
rs1469876539 209 dbSNP
rs1013908930 211 dbSNP
rs1362261136 214 dbSNP
rs982264106 230 dbSNP
rs547028452 231 dbSNP
rs760729085 233 dbSNP
rs993616053 234 dbSNP
rs897879964 246 dbSNP
rs1212390160 252 dbSNP
rs1449212806 253 dbSNP
rs913553163 260 dbSNP
rs1222704134 267 dbSNP
rs1348173174 268 dbSNP
rs776043814 270 dbSNP
rs1037711072 272 dbSNP
rs989081757 273 dbSNP
rs1234487046 280 dbSNP
rs79897350 304 dbSNP
rs1257151085 327 dbSNP
rs1425881361 333 dbSNP
rs1168779639 339 dbSNP
rs1017776131 352 dbSNP
rs1437253071 365 dbSNP
rs1173531613 368 dbSNP
rs564629757 379 dbSNP
rs1007810079 380 dbSNP
rs1050726806 387 dbSNP
rs1379486747 389 dbSNP
rs933548886 393 dbSNP
rs1047255394 395 dbSNP
rs1201340716 395 dbSNP
rs1219165183 395 dbSNP
rs1293194925 395 dbSNP
rs1439063491 401 dbSNP
rs1203147210 402 dbSNP
rs1319127323 402 dbSNP
rs1185056730 407 dbSNP
rs1238198663 407 dbSNP
rs1484366206 407 dbSNP
rs1400202986 408 dbSNP
rs1261459185 417 dbSNP
rs1478373746 427 dbSNP
rs762454098 428 dbSNP
rs1175792799 429 dbSNP
rs1454835894 446 dbSNP
rs546012966 450 dbSNP
rs1192108407 451 dbSNP
rs1476713494 465 dbSNP
rs759987560 480 dbSNP
rs774609797 482 dbSNP
rs1467250116 484 dbSNP
rs1286826949 488 dbSNP
rs1339564269 490 dbSNP
rs533138442 492 dbSNP
rs562586098 493 dbSNP
rs993975564 498 dbSNP
rs572735912 501 dbSNP
rs956463554 504 dbSNP
rs1222916187 509 dbSNP
rs1281799230 509 dbSNP
rs1279403480 510 dbSNP
rs924992587 516 dbSNP
rs1213866041 519 dbSNP
rs1037804367 522 dbSNP
rs747769955 531 dbSNP
rs796554250 532 dbSNP
rs1267306868 542 dbSNP
rs1480405532 549 dbSNP
rs1192345852 550 dbSNP
rs1346679077 552 dbSNP
rs1425258383 554 dbSNP
rs1023704918 559 dbSNP
rs374898979 564 dbSNP
rs1013543063 571 dbSNP
rs544053385 575 dbSNP
rs960606419 576 dbSNP
rs1299819927 578 dbSNP
rs1216092466 581 dbSNP
rs1435665517 582 dbSNP
rs1025492765 584 dbSNP
rs1369786270 585 dbSNP
rs1222165225 587 dbSNP
rs1362322067 589 dbSNP
rs1354693151 590 dbSNP
rs1269520919 592 dbSNP
rs1055045067 593 dbSNP
rs1236256739 594 dbSNP
rs1343532402 597 dbSNP
rs1314805367 602 dbSNP
rs189921851 626 dbSNP
rs554907152 627 dbSNP
rs1489152060 635 dbSNP
rs1046252820 640 dbSNP
rs1172229227 641 dbSNP
rs945223441 646 dbSNP
rs1412013125 649 dbSNP
rs539864086 654 dbSNP
rs989196422 656 dbSNP
rs1383117022 661 dbSNP
rs957660499 669 dbSNP
rs75120270 678 dbSNP
rs1351582725 679 dbSNP
rs986780753 680 dbSNP
rs955011120 681 dbSNP
rs780192840 684 dbSNP
rs376882698 685 dbSNP
rs1485172372 689 dbSNP
rs1242583845 697 dbSNP
rs993652937 698 dbSNP
rs172432 699 dbSNP
rs1356065259 709 dbSNP
rs902069146 713 dbSNP
rs1016318079 715 dbSNP
rs1006348789 716 dbSNP
rs1206095587 717 dbSNP
rs1307887270 721 dbSNP
rs1237026873 723 dbSNP
rs1457852081 725 dbSNP
rs185552987 727 dbSNP
rs1240905810 730 dbSNP
rs894475168 736 dbSNP
rs578012513 738 dbSNP
rs757016339 742 dbSNP
rs1002514898 763 dbSNP
rs1449154403 764 dbSNP
rs906427613 787 dbSNP
rs1357252210 790 dbSNP
rs1340100670 792 dbSNP
rs1449136047 804 dbSNP
rs1295268808 825 dbSNP
rs557878889 827 dbSNP
rs1360397217 839 dbSNP
rs1046755706 845 dbSNP
rs1259322038 872 dbSNP
rs945193810 873 dbSNP
rs1317931925 876 dbSNP
rs960618022 880 dbSNP
rs1025546565 881 dbSNP
rs1311296523 882 dbSNP
rs867347081 882 dbSNP
rs1252518607 884 dbSNP
rs892300941 885 dbSNP
rs1355507848 889 dbSNP
rs1192829622 890 dbSNP
rs962566603 891 dbSNP
rs538211841 900 dbSNP
rs1174385963 905 dbSNP
rs1401659556 910 dbSNP
rs1053463289 914 dbSNP
rs936458690 917 dbSNP
rs569432575 930 dbSNP
rs985837153 932 dbSNP
rs932997931 935 dbSNP
rs1474595524 937 dbSNP
rs1254719695 948 dbSNP
rs1029000997 951 dbSNP
rs545182285 957 dbSNP
rs557593364 958 dbSNP
rs747073097 960 dbSNP
rs972729896 964 dbSNP
rs1478754676 968 dbSNP
rs1196750629 972 dbSNP
rs139058121 979 dbSNP
rs1478423237 980 dbSNP
rs1491432559 980 dbSNP
rs150457811 980 dbSNP
rs398114220 980 dbSNP
rs566275577 980 dbSNP
rs574554127 980 dbSNP
rs778857063 980 dbSNP
rs902121702 980 dbSNP
rs962203045 980 dbSNP
rs1491374774 981 dbSNP
rs1491287549 982 dbSNP
rs1329980645 984 dbSNP
rs1273755297 994 dbSNP
rs1016475561 997 dbSNP
rs1232537210 1003 dbSNP
rs1052607141 1013 dbSNP
rs1351060325 1035 dbSNP
rs1334302324 1042 dbSNP
rs1286464934 1045 dbSNP
rs935567590 1055 dbSNP
rs984862740 1063 dbSNP
rs1207963535 1075 dbSNP
rs958803953 1076 dbSNP
rs1393411326 1083 dbSNP
rs1044277119 1085 dbSNP
rs1034868176 1088 dbSNP
rs1378641231 1093 dbSNP
rs35139104 1093 dbSNP
rs112077505 1094 dbSNP
rs1159551778 1095 dbSNP
rs115455304 1098 dbSNP
rs991845372 1103 dbSNP
rs938971635 1104 dbSNP
rs1392119922 1107 dbSNP
rs1024852101 1108 dbSNP
rs1461332436 1109 dbSNP
rs1415087031 1110 dbSNP
rs972666773 1112 dbSNP
rs1419372045 1114 dbSNP
rs1406772297 1118 dbSNP
rs1355521643 1120 dbSNP
rs114582270 1121 dbSNP
rs1469656072 1123 dbSNP
rs1253352621 1124 dbSNP
rs1009476987 1125 dbSNP
rs1467070628 1126 dbSNP
rs1236432836 1127 dbSNP
rs1263802957 1127 dbSNP
rs1179472999 1128 dbSNP
rs1241272216 1128 dbSNP
rs546991645 1132 dbSNP
rs1164524434 1133 dbSNP
rs528468453 1137 dbSNP
rs1459893648 1142 dbSNP
rs936406257 1143 dbSNP
rs1397470690 1144 dbSNP
rs1464667554 1146 dbSNP
rs570794695 1147 dbSNP
rs114193047 1150 dbSNP
rs530910377 1151 dbSNP
rs932963816 1153 dbSNP
rs1246863757 1162 dbSNP
rs1389198971 1167 dbSNP
rs1317323159 1172 dbSNP
rs922968829 1173 dbSNP
rs972336090 1175 dbSNP
rs562661347 1179 dbSNP
rs966044993 1181 dbSNP
rs1181562422 1183 dbSNP
rs940952873 1184 dbSNP
rs999767620 1194 dbSNP
rs769527405 1197 dbSNP
rs984934765 1198 dbSNP
rs1156535995 1204 dbSNP
rs74333406 1208 dbSNP
rs1170785063 1217 dbSNP
rs1355830311 1220 dbSNP
rs1034403081 1223 dbSNP
rs1395511298 1224 dbSNP
rs180718644 1231 dbSNP
rs1402621999 1234 dbSNP
rs561625977 1239 dbSNP
rs971418200 1241 dbSNP
rs1020735740 1242 dbSNP
rs1219270056 1246 dbSNP
rs1280158353 1247 dbSNP
rs540170011 1254 dbSNP
rs939066528 1261 dbSNP
rs918293815 1265 dbSNP
rs956645334 1266 dbSNP
rs576436029 1272 dbSNP
rs1036688989 1275 dbSNP
rs1263021087 1278 dbSNP
rs1260164465 1279 dbSNP
rs557515431 1280 dbSNP
rs888950516 1281 dbSNP
rs1050181869 1286 dbSNP
rs545837103 1293 dbSNP
rs901497291 1297 dbSNP
rs1377875097 1307 dbSNP
rs868094025 1308 dbSNP
rs976177864 1312 dbSNP
rs940358938 1314 dbSNP
rs1383230328 1326 dbSNP
rs1030969379 1329 dbSNP
rs74129471 1330 dbSNP
rs1365516912 1336 dbSNP
rs376363207 1337 dbSNP
rs1218751916 1338 dbSNP
rs1302157823 1340 dbSNP
rs968349312 1349 dbSNP
rs1375677703 1369 dbSNP
rs1049351521 1370 dbSNP
rs1238317281 1371 dbSNP
rs1022942510 1375 dbSNP
rs752750246 1376 dbSNP
rs1012490121 1382 dbSNP
rs1374540342 1394 dbSNP
rs895329725 1403 dbSNP
rs1457832313 1406 dbSNP
rs1056641625 1424 dbSNP
rs557556725 1430 dbSNP
rs1156531594 1434 dbSNP
rs927491354 1443 dbSNP
rs1420102006 1451 dbSNP
rs78756330 1451 dbSNP
rs780396748 1457 dbSNP
rs1348052878 1459 dbSNP
rs1427825308 1469 dbSNP
rs971914628 1470 dbSNP
rs553690831 1480 dbSNP
rs189829781 1481 dbSNP
rs1261173277 1488 dbSNP
rs1191591525 1490 dbSNP
rs1444794707 1496 dbSNP
rs1036700405 1497 dbSNP
rs1400541216 1501 dbSNP
rs913213518 1503 dbSNP
rs988748693 1504 dbSNP
rs957380091 1507 dbSNP
rs570775326 1519 dbSNP
rs866044633 1524 dbSNP
rs211395 1536 dbSNP
rs1029271560 1537 dbSNP
rs1307395557 1540 dbSNP
rs997259436 1547 dbSNP
rs901568269 1553 dbSNP
rs1178737592 1561 dbSNP
rs1411422654 1561 dbSNP
rs1275835464 1566 dbSNP
rs752048622 1570 dbSNP
rs932566969 1571 dbSNP
rs1036128118 1572 dbSNP
rs1396764856 1573 dbSNP
rs1416081442 1580 dbSNP
rs1355480899 1583 dbSNP
rs1311923434 1601 dbSNP
rs1004519891 1607 dbSNP
rs1444744180 1608 dbSNP
rs887443578 1611 dbSNP
rs76670295 1614 dbSNP
rs1168247382 1619 dbSNP
rs937621232 1625 dbSNP
rs924004375 1630 dbSNP
rs927468969 1634 dbSNP
rs569836384 1635 dbSNP
rs968483127 1646 dbSNP
rs1457921094 1653 dbSNP
rs1022278889 1669 dbSNP
rs1235489436 1671 dbSNP
rs1182330898 1672 dbSNP
rs1421373804 1672 dbSNP
rs1419980766 1673 dbSNP
rs766713979 1677 dbSNP
rs1476229744 1678 dbSNP
rs991519663 1679 dbSNP
rs1476846434 1681 dbSNP
rs1258269802 1692 dbSNP
rs959639364 1699 dbSNP
rs950263790 1702 dbSNP
rs913289275 1709 dbSNP
rs988863001 1719 dbSNP
rs1332491929 1720 dbSNP
rs1358897758 1722 dbSNP
rs1449254575 1748 dbSNP
rs1187137113 1751 dbSNP
rs1295579030 1751 dbSNP
rs763375551 1752 dbSNP
rs1003672878 1754 dbSNP
rs1277010841 1757 dbSNP
rs896924320 1761 dbSNP
rs567937377 1766 dbSNP
rs1015322875 1771 dbSNP
rs1196745267 1778 dbSNP
rs1339378123 1780 dbSNP
rs1256735821 1786 dbSNP
rs1259461198 1789 dbSNP
rs1005288325 1791 dbSNP
rs1235613638 1792 dbSNP
rs936002486 1799 dbSNP
rs548303510 1813 dbSNP
rs1476461391 1829 dbSNP
rs536119107 1830 dbSNP
rs112463899 1838 dbSNP
rs979304916 1842 dbSNP
rs1337154963 1850 dbSNP
rs1359098703 1856 dbSNP
rs953443163 1856 dbSNP
rs1299392470 1860 dbSNP
rs1326448748 1861 dbSNP
rs901059635 1864 dbSNP
rs143485596 1869 dbSNP
rs376876219 1869 dbSNP
rs187176398 1872 dbSNP
rs934468001 1874 dbSNP
rs1282194577 1893 dbSNP
rs1351289515 1896 dbSNP
rs118079618 1899 dbSNP
rs528379255 1906 dbSNP
rs1262378066 1918 dbSNP
rs76900724 1919 dbSNP
rs771484327 1924 dbSNP
rs1014644768 1926 dbSNP
rs879097640 1932 dbSNP
rs1454865812 1934 dbSNP
rs1175798899 1948 dbSNP
rs887432353 1950 dbSNP
rs1471971646 1951 dbSNP
rs915260557 1952 dbSNP
rs1387786823 1954 dbSNP
rs1383359734 1962 dbSNP
rs775168056 1964 dbSNP
rs545499885 1967 dbSNP
rs796502328 1985 dbSNP
rs532894237 1986 dbSNP
rs1457607151 1991 dbSNP
rs575275089 1992 dbSNP
rs1216145891 2001 dbSNP
rs563341750 2012 dbSNP
rs1001773284 2023 dbSNP
rs906084843 2027 dbSNP
rs1208061449 2029 dbSNP
rs1468999041 2031 dbSNP
rs1195676092 2033 dbSNP
rs1045994661 2035 dbSNP
rs1236612368 2038 dbSNP
rs745804547 2044 dbSNP
rs891966368 2054 dbSNP
rs1183006145 2056 dbSNP
rs570566190 2060 dbSNP
rs541958552 2061 dbSNP
rs1352142506 2063 dbSNP
rs1456841334 2081 dbSNP
rs936117037 2102 dbSNP
rs1389362044 2109 dbSNP
rs1015744146 2110 dbSNP
rs925938311 2122 dbSNP
rs1005752329 2124 dbSNP
rs1374213444 2125 dbSNP
rs985843115 2126 dbSNP
rs932685116 2129 dbSNP
rs1028409392 2132 dbSNP
rs1237830872 2133 dbSNP
rs996503242 2139 dbSNP
rs1283546106 2144 dbSNP
rs1305330325 2147 dbSNP
rs76158778 2148 dbSNP
rs1441602535 2149 dbSNP
rs901112019 2151 dbSNP
rs1393638585 2152 dbSNP
rs11593733 2158 dbSNP
rs770697379 2159 dbSNP
rs556527137 2169 dbSNP
rs1387151234 2174 dbSNP
rs1419251053 2184 dbSNP
rs1475214925 2185 dbSNP
rs749078398 2189 dbSNP
rs983183366 2197 dbSNP
rs1397582629 2199 dbSNP
rs1461145864 2210 dbSNP
rs951797006 2216 dbSNP
rs1027424247 2221 dbSNP
rs1394100644 2224 dbSNP
rs1378893053 2225 dbSNP
rs1001579151 2232 dbSNP
rs1356028213 2244 dbSNP
rs777906464 2245 dbSNP
rs560794255 2246 dbSNP
rs1317416732 2247 dbSNP
rs182564019 2249 dbSNP
rs1014542969 2254 dbSNP
rs946796939 2255 dbSNP
rs796591749 2258 dbSNP
rs755329134 2266 dbSNP
rs1258724175 2273 dbSNP
rs1486936267 2274 dbSNP
rs1192172643 2278 dbSNP
rs1420805797 2279 dbSNP
rs937963968 2281 dbSNP
rs756360295 2285 dbSNP
rs1374438251 2290 dbSNP
rs982383679 2296 dbSNP
rs1351011364 2306 dbSNP
rs1375907987 2310 dbSNP
rs1416511617 2314 dbSNP
rs371370295 2322 dbSNP
rs1339875650 2332 dbSNP
rs904589206 2333 dbSNP
rs144107279 2334 dbSNP
rs1310649119 2336 dbSNP
rs1232890866 2341 dbSNP
rs1281450201 2342 dbSNP
rs1234734396 2354 dbSNP
rs377629722 2360 dbSNP
rs1263140658 2367 dbSNP
rs932606430 2369 dbSNP
rs1369903933 2376 dbSNP
rs922668651 2377 dbSNP
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rs544728531 5869 dbSNP
rs1488837578 5870 dbSNP
rs202130986 5870 dbSNP
rs1285732419 5871 dbSNP
rs1490833156 5879 dbSNP
rs950942372 5889 dbSNP
rs919402146 5891 dbSNP
rs1473009827 5892 dbSNP
rs973211211 5896 dbSNP
rs576257899 5903 dbSNP
rs1423619681 5907 dbSNP
rs1165991692 5911 dbSNP
rs909599964 5913 dbSNP
rs192184985 5927 dbSNP
rs954639229 5930 dbSNP
rs937670611 5931 dbSNP
rs536147122 5932 dbSNP
rs927662215 5942 dbSNP
rs982309807 5943 dbSNP
rs1343042365 5957 dbSNP
rs966909390 5973 dbSNP
rs1299689412 5976 dbSNP
rs536219927 5981 dbSNP
rs1361494492 5998 dbSNP
rs1226110316 5999 dbSNP
rs892340728 6029 dbSNP
rs1483443530 6035 dbSNP
rs1206835066 6036 dbSNP
rs1235923146 6037 dbSNP
rs1032584695 6041 dbSNP
rs369680187 6042 dbSNP
rs1448139526 6043 dbSNP
rs1168513284 6048 dbSNP
rs765973519 6056 dbSNP
rs989627886 6061 dbSNP
rs1171960315 6080 dbSNP
rs1357035900 6081 dbSNP
rs904570444 6085 dbSNP
rs572338824 6087 dbSNP
rs958447792 6089 dbSNP
rs553465768 6093 dbSNP
rs1432765183 6102 dbSNP
rs1296817916 6105 dbSNP
rs1017687898 6108 dbSNP
rs1340046611 6109 dbSNP
rs1216373898 6110 dbSNP
rs776444661 6114 dbSNP
rs1378138351 6115 dbSNP
rs1044436038 6118 dbSNP
rs1204557630 6128 dbSNP
rs1008093666 6129 dbSNP
rs762367435 6144 dbSNP
rs1432693076 6147 dbSNP
rs538598752 6148 dbSNP
rs1188430910 6149 dbSNP
rs1057396185 6161 dbSNP
rs1427236217 6169 dbSNP
rs1452869809 6174 dbSNP
rs1196164241 6175 dbSNP
rs1187757215 6176 dbSNP
rs571168685 6186 dbSNP
rs1478265439 6190 dbSNP
rs1263009823 6195 dbSNP
rs549423930 6198 dbSNP
rs1407970759 6202 dbSNP
rs919440649 6212 dbSNP
rs1319689872 6213 dbSNP
rs1326950482 6216 dbSNP
rs1257123054 6218 dbSNP
rs1209983540 6220 dbSNP
rs1273094799 6221 dbSNP
rs973939911 6221 dbSNP
rs1366999079 6238 dbSNP
rs1224311907 6239 dbSNP
rs897046963 6240 dbSNP
rs1279517735 6242 dbSNP
rs1208460583 6250 dbSNP
rs1218926446 6250 dbSNP
rs1285469884 6255 dbSNP
rs1449219834 6263 dbSNP
rs537548432 6263 dbSNP
rs1292916223 6268 dbSNP
rs567514523 6269 dbSNP
rs985829774 6270 dbSNP
rs941163634 6272 dbSNP
rs1030406651 6273 dbSNP
rs1471444985 6283 dbSNP
rs888311525 6288 dbSNP
rs1158133743 6293 dbSNP
rs549201950 6304 dbSNP
rs760789256 6305 dbSNP
rs1404077822 6310 dbSNP
rs527960010 6311 dbSNP
rs1491326918 6319 dbSNP
rs956800453 6319 dbSNP
rs1491487585 6320 dbSNP
rs1285314686 6321 dbSNP
rs1032179624 6322 dbSNP
rs560812329 6323 dbSNP
rs904621481 6325 dbSNP
rs1023084697 6348 dbSNP
rs927734493 6354 dbSNP
rs981712976 6355 dbSNP
rs945050111 6358 dbSNP
rs895855728 6362 dbSNP
rs773542128 6363 dbSNP
rs929576873 6363 dbSNP
rs72775184 6364 dbSNP
rs1257265320 6372 dbSNP
rs1481837064 6372 dbSNP
rs533319300 6376 dbSNP
rs1180655086 6384 dbSNP
rs562874372 6385 dbSNP
rs942230431 6397 dbSNP
rs544714432 6398 dbSNP
rs990175735 6410 dbSNP
rs879351436 6419 dbSNP
rs1412938268 6435 dbSNP
rs958226416 6437 dbSNP
rs1425289946 6443 dbSNP
rs558545849 6444 dbSNP
rs1368803336 6447 dbSNP
rs561047349 6466 dbSNP
rs1329820841 6467 dbSNP
rs986197301 6479 dbSNP
rs1341853259 6482 dbSNP
rs985879696 6484 dbSNP
rs1249280945 6487 dbSNP
rs1360779641 6488 dbSNP
rs1248822339 6490 dbSNP
rs933060844 6497 dbSNP
rs1246480991 6499 dbSNP
rs143494405 6501 dbSNP
rs114056056 6503 dbSNP
rs1311716979 6515 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_004521 | 3UTR | UUAAAACGUCUUCCUUUUUUUUUCUUAAGAGAAAAUGGAACAUUUAGGUUAAAUGUCUUUAAAUUUUACCACUUAACAACACUACAUGCCCAUAAAAUAUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_004521 | 3UTR | UUUCUUAAGAGAAAAUGGAACAUUUAGGUUAAAUGUCUUUAAAUUUUACCACUUAACAACACUACAUGCCCAUAAAAUAUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_004521 | 3UTR | UCCUUUUUUUUUCUUAAGAGAAAAUGGAACAUUUAGGUUAAAUGUCUUUAAAUUUUACCACUUAACAACACUACAUGCCCAUAAAAUAUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_004521 | 3UTR | UAAGAGAAAAUGGAACAUUUAGGUUAAAUGUCUUUAAAUUUUACCACUUAACAACACUACAUGCCCAUAAAAUAUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_004521 | 3UTR | UUUUUCUUAAGAGAAAAUGGAACAUUUAGGUUAAAUGUCUUUAAAUUUUACCACUUAACAACACUACAUGCCCAUAAAAUAUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_004521 | 3UTR | AAUUUUACCACUUAACAACACUACAUGCCCAUAAAAUAUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000302418.4 | 3UTR | UCUUUAAAUUUUACCACUUAACAACACUACAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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