pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HDLBP   
Synonyms HBP, PRO2900, VGL
Description high density lipoprotein binding protein
Transcript NM_005336   
Other Transcripts NM_203346   
Expression
Putative miRNA Targets on HDLBP
3'UTR of HDLBP
(miRNA target sites are highlighted)
>HDLBP|NM_005336|3'UTR
   1 TGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGGTTTGTCTCAATCTGACCCAGCG
  81 GCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTGGCTGTGTGTGCG
 161 GCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCGTG
 241 CTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCC
 321 GTGGCTAGGATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATAAAAGCCAAACGTTTGCCCTC
 401 TTCCTTTCCCACCTCCCTCCTGCCAGTTTCCCTTGGTCCAGACAGTCCTGTTTGTGGAGTGCAATCAGCCTCCTCCAGCT
 481 GCCAGAGCGCCTCAGCACAGGTGTCAGGGTGCAAGGAAGACCTGGCAATGGACAGCAGGAGGCAGGTTCCTGGAGCTGGG
 561 GGGTGACCTGAGAGGCAGAGGGTGACGGGTTCTCAGGCAGTCCTGATTTTACCTGCCGTGGGGTCTGAAAGCACCAAGGG
 641 TCCCTGCCCCTACCTCCACTGCCAGACCCTCAGCCTGAGGTCTGGTGAGTGGAGCCTGGAGGCAAGGTGGTAGGCACCAT
 721 CTGGGTCCCCTGTGGCCGTCACAGTGTCTGCTGTGATTGAGATGCGCACAGGTTGGGGGAGGTAGGGCCTTACGCTTGTC
 801 CTCAGTGGGGGCAGTTTGCCTTAGATGACAGCTGGGCTCTTCTTCACACCACCTGCAGCCCCTCCCTGCCCCTGCCCTAG
 881 CTGCTGTGTGTTCAGTTGCCTTCTTTCTACCTCAGCCGGCGTGGAGTGGTCTCTGTGCAGTTAGTGCCACCCCACACACC
 961 CGTCTCTTGATTGAGATGTTTCTGGTGGTTATGGGTTTCCCGTGGAGCTGGGGGTGGGCGCCGTGTACCTAAGCTGGAGG
1041 CTGGCGCTCTCCCTCAGCACAGGTGGGTCAGTGGCCAGCAGGCCCATCTGGAGTGGGAGTGGGCACTTCCACCCCGCCCA
1121 CAGGCCATCCGGCTGTGCAGGCCAGCCCCTAGGAGCAGGTCCCGGGTGACTGGCAGTTTTCACGGTCTAGGGCCGAGACG
1201 ATGGCATGGGGCCTAGAGCATGAGGTAGAGCAGAATGCAGACCACGCCGCTGGATGCCGAGAGACCCTGCTCTCCGAGGG
1281 AGGCATCTGTGTCATGCTGTGAGGGCTGAGGACGGGGCCCTAGTCTCTGGTTTTCTGGTCTTAACATCCTTATCTGTGTC
1361 CGCCACGGAGGTGACTGAGCTGCTAGCGAGTTGTCCTGTCCCAGGTACTTGAGTTTTGGAAAAGCTGACTCACGCCCATC
1441 CATCTCACAGCCCTTCCCTGGGGACAGTCGCTTCCGCCTTGACACCTCACTCTCAGTTGAATAACTCAAGCTTGGTCATC
1521 TTCAGACTCGAATTCTTGAGTAGACCCAGACGGCTTAGCCCAAGTCTAGTTGCAGCTGCCTCGGCAAGTCCCCATTTGCT
1601 CAGGCAGCCCTGAATGGGCCTGTTTACAGGAATGGTAAATTGGGATTGGAAGGAATATAGCTTCCAGCTTCATAGGCTAG
1681 GGTGACCACGGCTTAGGAAACAGGGAAAGAAAGCAAGGCCCTTTTCCTGCCTTTCCCGGGATCTGTCTACTCCACCTCCA
1761 CGGGGGAGGCCAGTGGGGAAGGGCTGTCACCTCTTCCCCATCTGCATGAGTTCTGGAACTCTGTCCTGTTGGCTGCTTGC
1841 TTCCAGCTCCCCCCAATCTCCATCGCAGCGGGTTCCTCCTGTCTTTTCTACAGTGTCATAAAACATCCTGCCCCTACCCT
1921 CTCCCAAAGGTCAATTTTAATTCTCACCAAGTTTTGCACATCTCTGTATGTCGCTTGATGTCTTAGACGCGAGCCCTTTC
2001 CTAAACTGTTCAGCGCTCTCTTTTCCTTTGGGTGGTTGTTGCAAGGGTGATGACATGACTGTCCCCAGGCCTGTCTCCCT
2081 GAAGCGTCTGTGCTGTCAGGACAGCCCTGGGCAGAGATGAGGCAGGGGTGAGGCGTGCGTGTGCTTTTCCTCCTTGTTGG
2161 ATGTCTTCCATATCATCTGTTTCCATAGCTACAATCCATCCCTTGGCCTTAACTTTGGAATTTGGAGATTATATGCAAAC
2241 ATGTGTAAAGGCTCATGAATATGGATGACACTGGAATTTTATAAATTCTAAAATAAAACCCGAAACCAGATGTAGCATGC
2321 TGGGACTCATTTTGTCAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            :| :|:   || ||||||| 
Target 5' ttGACGCTCTTCCCCCTTCCCg 3'
101 - 122 148.00 -15.60
2
miRNA  3' gauucuGGU-UCGGAGGAAGGGa 5'
                :|| |||  ||||||| 
Target 5' tccatcTCACAGC--CCTTCCCt 3'
1439 - 1459 148.00 -15.30
3
miRNA  3' gauUCUG-GUUCGGAGGAAGGGa 5'
             |||| |:|||  ||||:|| 
Target 5' cttAGACGCGAGC--CCTTTCCt 3'
1982 - 2002 147.00 -23.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31502711 7 COSMIC
COSN30506329 18 COSMIC
COSN16131409 23 COSMIC
COSN30473704 25 COSMIC
COSN18727316 40 COSMIC
COSN16131473 64 COSMIC
COSN30518335 66 COSMIC
COSN30709638 76 COSMIC
COSN166453 92 COSMIC
COSN31514547 93 COSMIC
COSN20074397 105 COSMIC
COSN30120058 106 COSMIC
COSN30542953 125 COSMIC
COSN26442480 159 COSMIC
COSN30093788 174 COSMIC
COSN30093707 179 COSMIC
COSN30168726 181 COSMIC
COSN26736718 230 COSMIC
COSN30162901 285 COSMIC
COSN31541594 390 COSMIC
COSN28741680 441 COSMIC
COSN31563824 479 COSMIC
COSN28687290 498 COSMIC
COSN31552327 586 COSMIC
COSN21626151 612 COSMIC
COSN22092605 1014 COSMIC
COSN31490526 1022 COSMIC
COSN20740555 1023 COSMIC
COSN31588519 1045 COSMIC
COSN31552498 1078 COSMIC
COSM9423884 1242 COSMIC
COSM4133719 1263 COSMIC
COSM9427542 1360 COSMIC
COSM5781622 1440 COSMIC
COSN15117679 1470 COSMIC
COSN22411812 1804 COSMIC
COSN31487586 1810 COSMIC
COSN32062434 1813 COSMIC
COSN32057261 1848 COSMIC
COSN22213566 1980 COSMIC
COSN30174323 1988 COSMIC
COSN31541056 2009 COSMIC
COSN31526786 2114 COSMIC
COSN31596898 2138 COSMIC
COSN30165203 2156 COSMIC
COSN32064410 2183 COSMIC
rs15129 40 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1327397098 5 dbSNP
rs775321848 11 dbSNP
rs769609365 13 dbSNP
rs759203821 14 dbSNP
rs776522556 15 dbSNP
rs1390314942 19 dbSNP
rs770709432 20 dbSNP
rs746964103 21 dbSNP
rs149764127 26 dbSNP
rs1189510584 30 dbSNP
rs2230360 36 dbSNP
rs1321434441 39 dbSNP
rs15129 40 dbSNP
rs1198454140 41 dbSNP
rs1409357069 46 dbSNP
rs372425746 47 dbSNP
rs749580078 48 dbSNP
rs78125729 49 dbSNP
rs1328546192 51 dbSNP
rs922964904 52 dbSNP
rs1478125723 53 dbSNP
rs565782985 54 dbSNP
rs749765552 64 dbSNP
rs956478120 68 dbSNP
rs916408331 71 dbSNP
rs990569933 75 dbSNP
rs116424429 79 dbSNP
rs978949931 80 dbSNP
rs1283969326 87 dbSNP
rs749400516 89 dbSNP
rs2305069 92 dbSNP
rs1023611892 93 dbSNP
rs967007685 98 dbSNP
rs1019841890 105 dbSNP
rs1008475240 106 dbSNP
rs1379080738 109 dbSNP
rs889996556 110 dbSNP
rs187635424 113 dbSNP
rs1292446576 114 dbSNP
rs1446929478 115 dbSNP
rs1213959694 119 dbSNP
rs1398865051 120 dbSNP
rs1167902482 121 dbSNP
rs1013187288 129 dbSNP
rs1028476560 130 dbSNP
rs11552802 133 dbSNP
rs1472413226 135 dbSNP
rs1182254507 139 dbSNP
rs1386815339 143 dbSNP
rs960276660 144 dbSNP
rs898544514 146 dbSNP
rs867709502 150 dbSNP
rs1037053111 157 dbSNP
rs1332243009 159 dbSNP
rs368742242 159 dbSNP
rs1035727022 160 dbSNP
rs1449337262 161 dbSNP
rs567881180 163 dbSNP
rs897935169 164 dbSNP
rs1037482242 167 dbSNP
rs1005980258 168 dbSNP
rs879839113 179 dbSNP
rs888967568 181 dbSNP
rs778085361 182 dbSNP
rs1289679155 184 dbSNP
rs1244202703 186 dbSNP
rs117069991 187 dbSNP
rs750465650 188 dbSNP
rs1310662513 189 dbSNP
rs1441800469 192 dbSNP
rs530682380 201 dbSNP
rs1244757979 202 dbSNP
rs916439537 203 dbSNP
rs1177766240 207 dbSNP
rs1381199050 208 dbSNP
rs1170919945 210 dbSNP
rs990601052 211 dbSNP
rs933259771 224 dbSNP
rs936448636 225 dbSNP
rs748274762 227 dbSNP
rs1295938224 228 dbSNP
rs139790495 232 dbSNP
rs147268261 238 dbSNP
rs1332433822 240 dbSNP
rs1377211726 243 dbSNP
rs925052665 246 dbSNP
rs966810847 250 dbSNP
rs1343593677 254 dbSNP
rs1219288103 256 dbSNP
rs1264998110 258 dbSNP
rs761631938 258 dbSNP
rs1456357771 260 dbSNP
rs1197837194 263 dbSNP
rs1238513939 269 dbSNP
rs1322693693 270 dbSNP
rs912227431 272 dbSNP
rs529747064 273 dbSNP
rs879768862 274 dbSNP
rs1159194251 278 dbSNP
rs954263205 288 dbSNP
rs1178675230 289 dbSNP
rs559417833 290 dbSNP
rs1028507888 293 dbSNP
rs947515663 294 dbSNP
rs1392783253 301 dbSNP
rs541010493 305 dbSNP
rs992119367 314 dbSNP
rs1436616255 315 dbSNP
rs1284625005 318 dbSNP
rs754974616 320 dbSNP
rs1016061084 321 dbSNP
rs1036080186 330 dbSNP
rs1478503903 334 dbSNP
rs1341142570 337 dbSNP
rs1207830968 338 dbSNP
rs1267022142 339 dbSNP
rs1004293316 365 dbSNP
rs1246381087 366 dbSNP
rs547760012 369 dbSNP
rs1261070580 371 dbSNP
rs972065739 378 dbSNP
rs1477782556 384 dbSNP
rs1171935800 389 dbSNP
rs962030893 390 dbSNP
rs1045691577 391 dbSNP
rs1220477724 398 dbSNP
rs1163002415 408 dbSNP
rs1489485293 411 dbSNP
rs565532026 419 dbSNP
rs774319983 420 dbSNP
rs543665403 429 dbSNP
rs751512245 431 dbSNP
rs895039980 438 dbSNP
rs1054987733 448 dbSNP
rs1296285627 458 dbSNP
rs1006264714 459 dbSNP
rs936465580 460 dbSNP
rs1315640244 463 dbSNP
rs1264585746 464 dbSNP
rs1357360516 469 dbSNP
rs1283989129 471 dbSNP
rs1488035527 485 dbSNP
rs888913728 486 dbSNP
rs562487526 488 dbSNP
rs1042568337 489 dbSNP
rs1422554839 494 dbSNP
rs62186361 498 dbSNP
rs1369376263 504 dbSNP
rs912258742 508 dbSNP
rs1165028260 513 dbSNP
rs1358218671 519 dbSNP
rs1060202 528 dbSNP
rs1052518625 530 dbSNP
rs1288912410 534 dbSNP
rs1387111891 535 dbSNP
rs377357115 535 dbSNP
rs1394175316 545 dbSNP
rs903541351 550 dbSNP
rs1383177579 557 dbSNP
rs527662907 564 dbSNP
rs1307427869 568 dbSNP
rs1298569335 571 dbSNP
rs543138653 572 dbSNP
rs145584288 576 dbSNP
rs1482582935 577 dbSNP
rs1200321904 579 dbSNP
rs1257323786 582 dbSNP
rs1343334164 584 dbSNP
rs974276056 586 dbSNP
rs963239424 587 dbSNP
rs1438673965 591 dbSNP
rs1159234141 594 dbSNP
rs764991827 596 dbSNP
rs916059217 597 dbSNP
rs991694189 600 dbSNP
rs1464494726 604 dbSNP
rs938917419 606 dbSNP
rs1015761976 610 dbSNP
rs1406721595 612 dbSNP
rs1433868863 613 dbSNP
rs796081951 617 dbSNP
rs769330159 618 dbSNP
rs1310461801 623 dbSNP
rs1232610586 624 dbSNP
rs1478920614 633 dbSNP
rs1012847789 634 dbSNP
rs895071298 635 dbSNP
rs972306473 644 dbSNP
rs1197200452 645 dbSNP
rs1055420913 647 dbSNP
rs1485199899 652 dbSNP
rs1000785020 656 dbSNP
rs553767446 657 dbSNP
rs538618074 673 dbSNP
rs570415334 678 dbSNP
rs1042208899 681 dbSNP
rs114165757 690 dbSNP
rs536935031 691 dbSNP
rs1360355807 694 dbSNP
rs953528451 699 dbSNP
rs932270734 708 dbSNP
rs1300180831 709 dbSNP
rs920931162 711 dbSNP
rs1386324561 712 dbSNP
rs974770165 714 dbSNP
rs1221368555 716 dbSNP
rs1341964994 720 dbSNP
rs941604306 730 dbSNP
rs908734149 731 dbSNP
rs140076981 737 dbSNP
rs548059476 738 dbSNP
rs1359542654 741 dbSNP
rs529829526 743 dbSNP
rs1487286011 744 dbSNP
rs901687525 744 dbSNP
rs1030901774 745 dbSNP
rs1481381791 746 dbSNP
rs1191347742 748 dbSNP
rs565744567 753 dbSNP
rs999449036 763 dbSNP
rs1466422683 764 dbSNP
rs903488759 765 dbSNP
rs183327770 766 dbSNP
rs1348407671 769 dbSNP
rs1467428341 773 dbSNP
rs947765578 775 dbSNP
rs1347408499 783 dbSNP
rs958735729 786 dbSNP
rs532106130 793 dbSNP
rs761250846 793 dbSNP
rs903738081 794 dbSNP
rs1258634146 813 dbSNP
rs1490714724 816 dbSNP
rs564865013 818 dbSNP
rs745427510 827 dbSNP
rs1021224591 838 dbSNP
rs1241489599 843 dbSNP
rs151064874 846 dbSNP
rs374440141 847 dbSNP
rs1411309486 857 dbSNP
rs1423472989 866 dbSNP
rs544144576 870 dbSNP
rs1164509622 872 dbSNP
rs1367678094 874 dbSNP
rs1242042063 877 dbSNP
rs1297629907 879 dbSNP
rs555082124 884 dbSNP
rs1201197137 885 dbSNP
rs890886714 887 dbSNP
rs1433451233 888 dbSNP
rs1050865645 890 dbSNP
rs928798097 895 dbSNP
rs536407615 897 dbSNP
rs1036539630 898 dbSNP
rs1038028081 901 dbSNP
rs941622583 902 dbSNP
rs1226164218 903 dbSNP
rs940979532 904 dbSNP
rs1305554579 907 dbSNP
rs147546104 909 dbSNP
rs1217776689 910 dbSNP
rs984780864 914 dbSNP
rs1235650924 915 dbSNP
rs1396598747 916 dbSNP
rs561565959 917 dbSNP
rs572604441 918 dbSNP
rs1449133977 920 dbSNP
rs761379019 921 dbSNP
rs1158097607 924 dbSNP
rs572228244 927 dbSNP
rs560164417 935 dbSNP
rs1402964089 936 dbSNP
rs1332839558 938 dbSNP
rs1359095422 938 dbSNP
rs1453892394 938 dbSNP
rs753469620 940 dbSNP
rs1237455731 941 dbSNP
rs757939489 943 dbSNP
rs1370628821 949 dbSNP
rs976593255 950 dbSNP
rs141579846 961 dbSNP
rs1033436996 962 dbSNP
rs760059671 962 dbSNP
rs1427714941 966 dbSNP
rs1204081166 975 dbSNP
rs999437615 977 dbSNP
rs773542080 979 dbSNP
rs1456611346 981 dbSNP
rs967979415 984 dbSNP
rs1181284534 987 dbSNP
rs968388307 992 dbSNP
rs1471239740 993 dbSNP
rs1020842292 1000 dbSNP
rs1429269405 1001 dbSNP
rs1423785051 1002 dbSNP
rs1179073584 1006 dbSNP
rs774923849 1012 dbSNP
rs1009474908 1014 dbSNP
rs1335948776 1020 dbSNP
rs1161743970 1021 dbSNP
rs1011884880 1022 dbSNP
rs894820493 1023 dbSNP
rs1458721673 1025 dbSNP
rs1223968426 1028 dbSNP
rs529387406 1038 dbSNP
rs1315895322 1039 dbSNP
rs867377238 1045 dbSNP
rs191018074 1046 dbSNP
rs1439758300 1048 dbSNP
rs1196879250 1051 dbSNP
rs1479444142 1053 dbSNP
rs1481053381 1056 dbSNP
rs1267049819 1059 dbSNP
rs1461831391 1060 dbSNP
rs907373110 1062 dbSNP
rs1036528242 1066 dbSNP
rs772653397 1071 dbSNP
rs374770614 1083 dbSNP
rs771157466 1094 dbSNP
rs577653292 1096 dbSNP
rs1405012384 1098 dbSNP
rs1049315540 1101 dbSNP
rs1285189803 1109 dbSNP
rs1226491891 1114 dbSNP
rs556280625 1115 dbSNP
rs921931887 1116 dbSNP
rs1047328798 1118 dbSNP
rs976160410 1119 dbSNP
rs950303628 1120 dbSNP
rs1490551261 1122 dbSNP
rs1377753507 1127 dbSNP
rs539335099 1130 dbSNP
rs923769098 1131 dbSNP
rs576240508 1133 dbSNP
rs1428390652 1134 dbSNP
rs1250022013 1135 dbSNP
rs1375071309 1137 dbSNP
rs1055857558 1139 dbSNP
rs571883189 1153 dbSNP
rs1364565641 1156 dbSNP
rs926037635 1163 dbSNP
rs1304411628 1164 dbSNP
rs536406413 1165 dbSNP
rs1381542563 1166 dbSNP
rs1277914032 1168 dbSNP
rs1318732494 1171 dbSNP
rs1022196143 1176 dbSNP
rs1259521098 1177 dbSNP
rs76969753 1183 dbSNP
rs959035114 1184 dbSNP
rs967433677 1186 dbSNP
rs1248288483 1189 dbSNP
rs913217764 1194 dbSNP
rs988096098 1195 dbSNP
rs1035131958 1199 dbSNP
rs74592012 1200 dbSNP
rs538734069 1204 dbSNP
rs1183337993 1207 dbSNP
rs1327316424 1211 dbSNP
rs1384280496 1216 dbSNP
rs1288026783 1218 dbSNP
rs1478313955 1219 dbSNP
rs896932246 1221 dbSNP
rs1361488444 1225 dbSNP
rs1452983940 1227 dbSNP
rs770094839 1228 dbSNP
rs1234279843 1230 dbSNP
rs571252393 1236 dbSNP
rs748221700 1242 dbSNP
rs996641941 1246 dbSNP
rs755274678 1248 dbSNP
rs964151934 1249 dbSNP
rs371260481 1258 dbSNP
rs1383839471 1259 dbSNP
rs1005698313 1260 dbSNP
rs528033648 1263 dbSNP
rs561396700 1264 dbSNP
rs1316468757 1265 dbSNP
rs1239852565 1267 dbSNP
rs1358035447 1272 dbSNP
rs1318375786 1275 dbSNP
rs185071438 1276 dbSNP
rs1203458522 1278 dbSNP
rs1244087705 1280 dbSNP
rs1461494445 1282 dbSNP
rs1184995154 1284 dbSNP
rs1247966632 1286 dbSNP
rs932235048 1288 dbSNP
rs1159159285 1291 dbSNP
rs1365485179 1294 dbSNP
rs527837684 1295 dbSNP
rs900494975 1297 dbSNP
rs896033766 1301 dbSNP
rs1055908459 1304 dbSNP
rs1040818673 1308 dbSNP
rs768728077 1313 dbSNP
rs567756519 1314 dbSNP
rs1309175322 1318 dbSNP
rs1475372869 1320 dbSNP
rs1043171681 1322 dbSNP
rs978188945 1325 dbSNP
rs1223359542 1327 dbSNP
rs183014750 1327 dbSNP
rs946120620 1340 dbSNP
rs1326173738 1347 dbSNP
rs1179995519 1349 dbSNP
rs1480077860 1355 dbSNP
rs1472444374 1356 dbSNP
rs545142279 1361 dbSNP
rs1251959707 1362 dbSNP
rs780390450 1367 dbSNP
rs116033831 1371 dbSNP
rs79035847 1375 dbSNP
rs1429900045 1378 dbSNP
rs12466277 1387 dbSNP
rs1168029065 1388 dbSNP
rs1462653546 1396 dbSNP
rs764728993 1401 dbSNP
rs922488721 1411 dbSNP
rs1214571679 1413 dbSNP
rs544244784 1419 dbSNP
rs975663790 1421 dbSNP
rs866365229 1426 dbSNP
rs1213231545 1427 dbSNP
rs1295251283 1432 dbSNP
rs746829172 1433 dbSNP
rs756257509 1433 dbSNP
rs1276319351 1434 dbSNP
rs1489675950 1434 dbSNP
rs1034672805 1439 dbSNP
rs758108556 1442 dbSNP
rs1005337679 1451 dbSNP
rs1184594428 1467 dbSNP
rs576306326 1469 dbSNP
rs527452609 1470 dbSNP
rs961041849 1471 dbSNP
rs1013852696 1475 dbSNP
rs1015274354 1476 dbSNP
rs536543067 1478 dbSNP
rs1288666144 1479 dbSNP
rs1363158730 1485 dbSNP
rs1005261994 1486 dbSNP
rs1299415784 1491 dbSNP
rs1034593829 1493 dbSNP
rs1244629785 1494 dbSNP
rs1291819958 1495 dbSNP
rs1002176290 1497 dbSNP
rs887914433 1501 dbSNP
rs1028273465 1505 dbSNP
rs750275395 1510 dbSNP
rs1486112986 1517 dbSNP
rs1283502918 1521 dbSNP
rs1203249378 1525 dbSNP
rs14345 1528 dbSNP
rs900776621 1529 dbSNP
rs560310191 1530 dbSNP
rs1164296165 1531 dbSNP
rs946160110 1536 dbSNP
rs944664356 1538 dbSNP
rs891846428 1545 dbSNP
rs553991219 1551 dbSNP
rs1042459842 1552 dbSNP
rs946816981 1553 dbSNP
rs1380165910 1555 dbSNP
rs1451378393 1564 dbSNP
rs915075463 1567 dbSNP
rs1357922644 1569 dbSNP
rs538775763 1572 dbSNP
rs1283529231 1573 dbSNP
rs1051784063 1580 dbSNP
rs1210383139 1581 dbSNP
rs933278605 1582 dbSNP
rs1461046021 1583 dbSNP
rs991083311 1584 dbSNP
rs1398238346 1591 dbSNP
rs1468704044 1594 dbSNP
rs937928454 1602 dbSNP
rs1403808477 1612 dbSNP
rs757033137 1614 dbSNP
rs1459248012 1615 dbSNP
rs927842696 1625 dbSNP
rs758435491 1626 dbSNP
rs1176505892 1630 dbSNP
rs1405738313 1642 dbSNP
rs894421844 1646 dbSNP
rs1337062492 1650 dbSNP
rs982070234 1651 dbSNP
rs1341864669 1655 dbSNP
rs1439459752 1664 dbSNP
rs960989506 1666 dbSNP
rs1278397845 1671 dbSNP
rs1064767 1679 dbSNP
rs942607962 1683 dbSNP
rs983828761 1689 dbSNP
rs191019713 1690 dbSNP
rs952506100 1691 dbSNP
rs1204023743 1702 dbSNP
rs909727577 1704 dbSNP
rs1241235144 1711 dbSNP
rs1203950389 1713 dbSNP
rs984324617 1718 dbSNP
rs1027807062 1719 dbSNP
rs1191015277 1720 dbSNP
rs996718214 1726 dbSNP
rs1473866829 1730 dbSNP
rs1444051100 1735 dbSNP
rs1429196275 1737 dbSNP
rs1480993684 1738 dbSNP
rs537394783 1741 dbSNP
rs900684814 1743 dbSNP
rs1243871826 1749 dbSNP
rs1261042519 1750 dbSNP
rs1407820550 1755 dbSNP
rs951155163 1757 dbSNP
rs1354667323 1761 dbSNP
rs1411117531 1762 dbSNP
rs1321455877 1766 dbSNP
rs111367332 1767 dbSNP
rs766876681 1767 dbSNP
rs1344778166 1775 dbSNP
rs1219420981 1781 dbSNP
rs1276351425 1782 dbSNP
rs1019574750 1786 dbSNP
rs1339147344 1790 dbSNP
rs992524634 1794 dbSNP
rs1009159294 1802 dbSNP
rs143881414 1806 dbSNP
rs1484115842 1810 dbSNP
rs1450892757 1815 dbSNP
rs1341572540 1819 dbSNP
rs1001828673 1822 dbSNP
rs1336865127 1833 dbSNP
rs1042449971 1840 dbSNP
rs1371635988 1849 dbSNP
rs1451307005 1852 dbSNP
rs10892 1853 dbSNP
rs1167029034 1855 dbSNP
rs562686969 1856 dbSNP
rs1055229729 1862 dbSNP
rs1410175799 1862 dbSNP
rs1221691209 1863 dbSNP
rs560342889 1864 dbSNP
rs565084282 1865 dbSNP
rs927822420 1869 dbSNP
rs11897278 1870 dbSNP
rs1324529498 1872 dbSNP
rs773693141 1876 dbSNP
rs562812203 1881 dbSNP
rs544605234 1883 dbSNP
rs1344560181 1884 dbSNP
rs1243904205 1888 dbSNP
rs76284946 1890 dbSNP
rs1360802622 1893 dbSNP
rs1460049848 1904 dbSNP
rs933371811 1907 dbSNP
rs376419718 1913 dbSNP
rs1260252193 1916 dbSNP
rs908217117 1919 dbSNP
rs373395059 1928 dbSNP
rs115328890 1932 dbSNP
rs1450901422 1934 dbSNP
rs117218138 1935 dbSNP
rs942637238 1943 dbSNP
rs1457958858 1945 dbSNP
rs1165002441 1949 dbSNP
rs909767870 1950 dbSNP
rs1230357140 1951 dbSNP
rs1320927569 1955 dbSNP
rs572358586 1960 dbSNP
rs1450640763 1961 dbSNP
rs1314483070 1962 dbSNP
rs1322471718 1966 dbSNP
rs573311376 1968 dbSNP
rs776869979 1968 dbSNP
rs918402489 1972 dbSNP
rs114465317 1973 dbSNP
rs1270337252 1980 dbSNP
rs137952649 1983 dbSNP
rs1019143419 1985 dbSNP
rs1009149584 1988 dbSNP
rs1423929590 1989 dbSNP
rs1353525197 1990 dbSNP
rs1188994033 1991 dbSNP
rs1362017951 1994 dbSNP
rs1326396236 2000 dbSNP
rs1406904498 2006 dbSNP
rs1390493698 2011 dbSNP
rs545010426 2011 dbSNP
rs1020954378 2014 dbSNP
rs555943485 2017 dbSNP
rs980136161 2020 dbSNP
rs1304911770 2022 dbSNP
rs145346443 2022 dbSNP
rs969014816 2023 dbSNP
rs141789883 2025 dbSNP
rs1055579727 2042 dbSNP
rs1002301739 2043 dbSNP
rs1010478939 2051 dbSNP
rs906352670 2055 dbSNP
rs1046256318 2057 dbSNP
rs572515450 2064 dbSNP
rs908497790 2072 dbSNP
rs1048314929 2079 dbSNP
rs554917993 2083 dbSNP
rs1483345972 2084 dbSNP
rs534254714 2085 dbSNP
rs74832529 2086 dbSNP
rs1030499664 2089 dbSNP
rs920945734 2092 dbSNP
rs997633153 2107 dbSNP
rs1414047234 2108 dbSNP
rs1479359591 2109 dbSNP
rs1175380746 2125 dbSNP
rs745641074 2129 dbSNP
rs1359995311 2134 dbSNP
rs975559084 2135 dbSNP
rs1296535439 2137 dbSNP
rs186568399 2138 dbSNP
rs965196633 2139 dbSNP
rs533316398 2141 dbSNP
rs1039055892 2144 dbSNP
rs1223976532 2149 dbSNP
rs1344151374 2149 dbSNP
rs1006607632 2153 dbSNP
rs1279396595 2156 dbSNP
rs887773447 2156 dbSNP
rs1312418276 2159 dbSNP
rs569426556 2168 dbSNP
rs1249250757 2169 dbSNP
rs550842850 2174 dbSNP
rs150128377 2177 dbSNP
rs1220973744 2180 dbSNP
rs929893837 2182 dbSNP
rs987666453 2185 dbSNP
rs1198426766 2186 dbSNP
rs1425533789 2189 dbSNP
rs1434674074 2191 dbSNP
rs562101573 2194 dbSNP
rs1372689503 2203 dbSNP
rs1308558713 2211 dbSNP
rs753270481 2216 dbSNP
rs1371927726 2218 dbSNP
rs1364286631 2226 dbSNP
rs77878964 2230 dbSNP
rs1021194814 2233 dbSNP
rs1294505312 2236 dbSNP
rs1370256763 2241 dbSNP
rs1491175718 2242 dbSNP
rs147465151 2243 dbSNP
rs1056860340 2245 dbSNP
rs1011166197 2252 dbSNP
rs1228535467 2261 dbSNP
rs938436601 2264 dbSNP
rs1357207870 2268 dbSNP
rs181622884 2273 dbSNP
rs958246047 2274 dbSNP
rs1033721255 2278 dbSNP
rs1302291601 2280 dbSNP
rs1489363665 2298 dbSNP
rs1002698238 2301 dbSNP
rs753779078 2302 dbSNP
rs1422723928 2307 dbSNP
rs189144149 2311 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            :| :|:   || ||||||| 
Target 5' uuGACGCUCUUCCCCCUUCCCg 3'
1 - 22
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177602. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_2_4 PAR-CLIP data was present in ERX177614. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_3_4 PAR-CLIP data was present in ERX177633. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_11 PAR-CLIP data was present in ERX177609. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_2_11 PAR-CLIP data was present in ERX177621. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_3_11 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_005336 | 3UTR | AAUGGUUUGUCUCAAUCUGACCCAGCGGCUGGACCCUCCGUAAAUUGUUGACGCUCUUCCCCCUUCCCGAGGUCCCGCAGGGAGCCUAGCGCCUGGCUGUGUGUGCGGCCGCUCCUCCAGGCCUGGCCGUGCCCGCUCAGGACCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903826
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_NS
Location of target site NM_005336 | 3UTR | AAAUUGUUGACGCUCUUCCCCCUUCCCGAGGUCCCGCAGGGAGCCUAGCGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_203346 | 3UTR | AGAAUGCAGACCACGCCGCUGGAUGCCGAGAGACCCUGCUCUCCGAGGGAGGCAUCUGUGUCAUGCUGUGAGGGCUGAGGACGGGGCCCUAGUCUCUGGUUUUCUGGUCUUAACAUCCUUAUCUGUGUCCGCCACGGAGGUGACUGAGCUGCUAGCGAGUUGUCCUGUCCCAGGUACUUGAGUUUUGGAAAAGCUGACUCACGCCCAUCCAUCUCACAGCCCUUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_203346 | 3UTR | CCGCCACGGAGGUGACUGAGCUGCUAGCGAGUUGUCCUGUCCCAGGUACUUGAGUUUUGGAAAAGCUGACUCACGCCCAUCCAUCUCACAGCCCUUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_203346 | 3UTR | AGGUACUUGAGUUUUGGAAAAGCUGACUCACGCCCAUCCAUCUCACAGCCCUUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_203346 | 3UTR | GAGCUGCUAGCGAGUUGUCCUGUCCCAGGUACUUGAGUUUUGGAAAAGCUGACUCACGCCCAUCCAUCUCACAGCCCUUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_203346 | 3UTR | AGUUGUCCUGUCCCAGGUACUUGAGUUUUGGAAAAGCUGACUCACGCCCAUCCAUCUCACAGCCCUUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_203346 | 3UTR | GACUCACGCCCAUCCAUCUCACAGCCCUUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000391975.1 | 3UTR | UUGACGCUCUUCCCCCUUCCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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