Gene Symbol |
CTC1
|
Synonyms |
AAF-132, AAF132, C17orf68, CRMCC, tmp494178 |
Description |
CST telomere replication complex component 1 |
Transcript |
NM_025099
|
Expression |
|
Putative miRNA Targets on CTC1 |
|
3'UTR of CTC1 (miRNA target sites are highlighted) |
>CTC1|NM_025099|3'UTR
1 CTGAACTGCAAGGATGGCCTGAGAGTCCTTCCTTGCTGAAAACCTGAAGGCCTAGGTCCTGGCTCCTCTCCCTACTTGTT
81 CTGTGATTGAACCAAGGACTCCAGATTCACAAACTGCTACTCCACTATAATTTCCCTTCTTTGGTGTTCTGGTGCCAGCC
161 TGCCTTGGCAAAATTGTGGCAACAGGAAATCATGGCCCTATTAATATGTCCTCTGATTGGGACAAGGCACCTGCATTCAC
241 AGGCGGCCCTGAGCACCTGGGTTCTGACTTTGTCGCAGGAGCTGAGGGAACAAAAGACTTGCTCGCTGTGGGGTGATGGT
321 GACAGGCCTATTGACCTGCAATGAAGCCCTCTGGTGTCATTTCTCACTGGTACTCATCTCTGGGGTCCCAGGCCTCCTGA
401 CTCCTAGTTGTCCACCTCCTAGGAACTCCTAGTCGTTCATCATCATTTCAGCCCTTTGCCGCCAGGGCCAAAGGTGGAAA
481 GTGATTTGGAAGAGAAGAGCTTTTCGTCCAGCAGAAGAAATGGTACCAAAATCAGTCTGTAAAGGAAGTAAATTGGGGAG
561 TTGGCGGCAAGGCAGAGAGCATAGCTATGATGGTCTCAGTCAGTAAGGCTGGGCCCTGCAGGAAGTCAAATATGAATGCC
641 TAGAGGTGTTCACAAGCACAAAGAAGGTGTAGGGGGAGGCAAGTGCCAGGCACAAGCAGGGGCAGGTGAGGACTCTGGGT
721 GACTGTGCTATAGGGCCCCAGGCTACGGTTAGCCCTGTAGGTTTCCCAAGGGCCTGGCCTAAGGCAGATCCTTGATCGAT
801 ATACCTTGAGACCAGAAGGTGCTCCGAAATCACAACCGTACAATTAGGGGATCTAGGAACAATTCTTTGGAGATACCAAT
881 GCCTTTGGCTGGTGTTGCTGCATTTCTTTACTGGGGACTGATAGATGGAGAGGTGGAAAGATGAGCTGAGGCACATCTTT
961 CAGAGCTACTGGGAGGCCATTTCTTCCTGGCTGTTAGGATTTGTTCGTGTTTGGGAGACCTTTAGAGCGTGGTTAAACCC
1041 ATATGTTGGGATTTATGCTGCTTTTATGGTAGCAATACCCTATATTAAGATTTGAAGTAGACCCGGAAAGTTAGTGGCCG
1121 GTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGAACCCCGTACGGGCCAGTGGGTGGCTT
1201 TTTTTTGTGTGTGTTTTGTTTTCTGACCCTCTGCTGTTATCCGGAAGTTTCTACCCGGAGCCAGTTGCCTTCTGGTAACA
1281 GAATTATATTGCACCTACTGCTTCCTATTCCCTGAATCACTAGCGCTCCCGAAGGCTTGGAGGGAGGAGTCTCTGGGCAC
1361 CCGGGTGAAAGGAAGGTTCACGTGCAACCGCCGCGTCTTTTTTTCCCTGAAGCGCTTTCATGGAGGCAGATGTTTGTCAG
1441 TCAAGGGAAGTAAGAAAGGCATTGGATGAAAACGAAGCCCTAAGCCTCGTAGTCGTGGCCGAGTGGTTAAGGCGATGGAC
1521 TAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACGTCATATTTTTTTCTTCAGCATACTGACCAT
1601 ATTTCTCTCCAGGATGGGATGATCCAGTCGGCACCCTCCAAACCTCTCATCTAGGAACTCTAGAATCGAGAATTTGATTT
1681 AGAGTCTATGATTTTGGTTTGAAATCTATGATTAACGTCTTTGGACATTGAAGGAAATCCGAGGAATGGACAAGTGATGC
1761 AAGAGCCAGTTGAGTTACCAAATTAGTTCTAGAAAGATCTGAAAAAGCTCGGTCCGGGTTCCTAGCTCTATATTCTTGTA
1841 GATGAATTTCAGGAACCTTTATGGCAGCTTCGGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATC
1921 CTGGGTTCGAATCCCAGCGGTGCCTTTATTCAATTGAAACAGCGTGATTTTGCGGCTAAATCCACATCCTTTCATGTATT
2001 GTTTTTATATCAGAACGCGTAAGAGTTTCTGTTCTGCACTCATAGCACCCACATTTCCTGCAGAGTCAAGCTGCCACTCC
2081 CATGAGATCGCCACTCTAAAAGGTGGTTCTCTAACTTAGGGGCAGAAATGTTGCATAGGCCTAAGGGTCCTTTGCTTAAC
2161 TGATGCCACACCCCACTGGTGCAGGTGGACTGGGTCAGGCGGCCGCCCCACCCTCGATGGAAGGGGCTGCCCACCTTCCA
2241 GGCCTCTTTCTCCACCCTAGGACGTCCCCTAGAACCTGAGCCACTTTGTTTTGTTTGGCTCTTCATTATAGTTCTTTGGG
2321 TTTGGTGGCTCATAATGTTATATATATAGTATATAATATAAAAATATATATTTAAATATACAGTATTTAAAATTTGGCAC
2401 AGCTTCCAGATGCGGTCCTCTAACTGGTCTTTCACTTGCAGTTACCTCCATCCCTCTCCACCAGCGGGATGTCAGGGTAA
2481 GGAGTAAGCAGGGATCCGGCTGGCCTGGCCTGGCCTGGCACCAGGTTTCGTGCAGCAGGGTGCAGAAGGGCTGAGGCCAT
2561 GTGAACAGAGTCCAAGAAAGCATCATTCGGGAGTCGCTAGGGATCCTGGTGTGGAAGGGCAGGGCACTTTTCTGGAGCAC
2641 TGAAGCTAGGCTGGTTAAGGAAGAAATAAATGCCAGAGATAAGGCAAGAAATAGGATCTGTGAGCTCTTGGCAGGACCTA
2721 AACCTCCTTGGAAGATAGGCAGAAAGCTCTCGACACCATTCCATGGCCCACGAACCAATGTAAGATGAGCAAATGGCTTG
2801 AAGGAATTGCTACCTCCAGGTCAAGCCAGGGATGCAGCACTGCCGAGACCACGTTTGTGCCAAGCACTGGGCTGGACCCT
2881 GTGCAGAACCAAATGAACAAGGCACGTTCCCCTTTCAGCACTAACGGCACTGTAAGAACAGGGAGAAGTGGAATCTAATC
2961 TGGCCTGAGGGTAGAGGGTGATCAGCTAAGTCTGAAACACCATGTAGAAACTTGCCATGTATGGCCGGGCGCGGTGGCTC
3041 ACGCCTGTAATCCCAGCGCTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGGAGTTCCAGACCAGCAGCCTGGCCAA
3121 CATAGTGAAACCTGGTAACATAGTGAAACCTCGTCTCTACTAAAAATGCAAAAAATTAGCCAGGCGTGGTGGCAGGCGCC
3201 TGCAGTCCTAGCTACTTGGGAGGCTGAGGCAAGAGAATCGCTTCAACCTTGGAGGGGGGAGGAGGTGTTGTCAGCCGAGA
3281 TCGCGCCACTGCATCCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAATGAAATAAAATAAACGAATGATCAA
3361 AAAAAAAAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' cuUCUUCUUAGU-----AGUCCUCc 5'
:|: |:|||| |||||||
Target 5' gtGGGCGGATCACGAGGTCAGGAGt 3'
|
3074 - 3098
|
154.00 |
-15.00 |
2
|
miRNA 3' cuUC-UUCUUAGU-AGUCCUCc 5'
|| ||| |||| ||:||||
Target 5' caAGAAAGCATCATTCGGGAGt 3'
|
2573 - 2594
|
150.00 |
-15.30 |
3
|
miRNA 3' cuUCUUCUUAGUAGUCCUcc 5'
||| ||||: ||||||
Target 5' gtAGATGAATT-TCAGGAac 3'
|
1838 - 1856
|
145.00 |
-11.80 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|