pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol CEP120   
Synonyms CCDC100, SRTD13
Description centrosomal protein 120
Transcript NM_001166226   
Other Transcripts NM_153223   
Expression
Putative miRNA Targets on CEP120
3'UTR of CEP120
(miRNA target sites are highlighted)
>CEP120|NM_001166226|3'UTR
   1 TAACATTTGGAAAAGCTTTATAGAGACTCTAAGTCTAAATTTTAATTTCTTTGTAAAAACCTCAAAAGTGAGGAAAATGG
  81 ATGTTTTAAAATGGTATTTTCAATTTTTTATAAGCAAAATTTTGTATGTTATTGTATAGTATTTATTTGATCTTATTTAC
 161 TTTATGCTACCTCTCCCACACTGGTTTTATTTGTAATTTGCATTTATATACTCATTTTAAATGACTTTTCAGTGTTTTTC
 241 ATAGTTTATAATCTGATGGCTAACTAACTTTCAAAACAGCTTTTAACTAAGTTTGTTGTAGGAGAAATGACTGCGGTAAT
 321 TTCCAGTTCTATAATGTTTCATGTTGAGCCAAAAGAGTATATCTTGCACTTTAAAAACGCTGCGTCCTATTCCATTTGAA
 401 TGTAAATTCTTAAAAGTTGAGACCAATTGTAACCAGTTTAACTCATTTTAGATGACCTTTTTTTCTTATAATATTTGCAA
 481 GTGACAAGTTTGAAAACAAAGCAAGATCAGTGCAGAGAAGCCACATGACATGTTGGGTGACAGATTGGTCATTTATTTAA
 561 ATAAAGTTAATACAGATTAAATTTGTTTCAAGAGCTATTGAATTTTCAAATTTTCAGTGTATTTATAACTTTTAAGAACA
 641 TGAAGTATTAGCTTAATATAGTTTTCTCTGTTGGTTTCTTCCTCAAGTTTGCATTGTTTTCTTTTGTTAAAATTAGAGAT
 721 TTCTTTTTATTTTCCAGTTATAGTAATACTAGCTGTCAGCTTAAACCCTCTGTAATAGAACATGGAAACAGACACATAAA
 801 GACATTAGCTGAAAAAATAGAGTGAAAATCAACTATTTTTTACTCCCGCTAATTTCAATCAATCGTTTTCAAAAGCGCAC
 881 GAGATTCACTCATTGGATTTATGCAGTGCCCTGTCTGTATAAAAACTCTTAAGAGTTCCTTTATATCATATTCTTCAGAG
 961 CCAACATTTGTCCTCAAAGCAACGTTTCCCACCTCCTTTTACTGAGTACTGAAAAAGTTTTAGCAAAGTCACAGATTAGG
1041 TTGAATTTCAAAATATATGTACTTTAAAAAGTTCTGATTTCCAAATATAATAAAGTTAAAATTAAGTATATACTTTAGGA
1121 AGTTACCAATAACTTCCATCAAAGCAGAGTAGGATATATGGTAACATTAATTTTCGGTCATTTCAAATGAGGTATATTTC
1201 TTATTAGGGAAATTAAAGTCCCTATATTTATTATATATTTTTTCCTTATTAACAGAGTATTAATCTAGTAAAAAATAACC
1281 CAGCAGTAAATAATAAAGAAATTACTGAATGAGAGGATAATGAATCTGAATCATAGCAGGAATTTGCAATATTAATTATG
1361 GTTAGCTATTTTTCTCTCATTGATTTTTGTGCCACTTGAATGGAACAGAAGCAAGCCTTATGTTTTGGAAGGTCTGCGGT
1441 AAAATGCTGTGACTGTTTACTTTCAATTGCATTGTGTGTTGCCTGTGACTGCTTTCAAACGCTAGAGGGGGCCTCTGATT
1521 TAAAGAAATAAAAAGGACTTTTCTAAAATGGATGTGTAGTTTATTTTGCCTTTTGTAAAGCTCTTTTGGCTATTGTAACT
1601 TAACAAATAAAATCATAATTGTGTGCATCTCTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accACGUUUUCAUUAACACCAAaaa 5'
             ||||| | ||||| |||||   
Target 5' attTGCAATATTAATTATGGTTagc 3'
1342 - 1366 146.00 -9.42
2
miRNA  3' accacGUUUUCAUU---AACACCAAAaa 5'
               ||:||| ||   || || |||  
Target 5' tggaaCAGAAGCAAGCCTTATGTTTTgg 3'
1401 - 1428 116.00 -6.90
3
miRNA  3' acCACGUUUUCAUUAACACCA--AAAa 5'
            | |::| ||  ||  ||||  ||| 
Target 5' ttGGGTGACAG--AT--TGGTCATTTa 3'
533 - 555 111.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30504428 14 COSMIC
COSN31530792 38 COSMIC
COSN28201978 78 COSMIC
COSN30529294 134 COSMIC
COSN31572912 196 COSMIC
COSN31514215 304 COSMIC
COSN31557130 384 COSMIC
COSN20690425 737 COSMIC
COSN10043766 965 COSMIC
COSN16158365 1389 COSMIC
COSN27959235 1454 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs140012450 1 dbSNP
rs760909864 2 dbSNP
rs763653254 5 dbSNP
rs1293891022 11 dbSNP
rs909761771 15 dbSNP
rs1279758957 27 dbSNP
rs984367403 28 dbSNP
rs1443623836 30 dbSNP
rs1370318991 31 dbSNP
rs773430262 31 dbSNP
rs762565021 33 dbSNP
rs752127445 35 dbSNP
rs1324051031 38 dbSNP
rs772264836 39 dbSNP
rs764756752 45 dbSNP
rs748291118 46 dbSNP
rs759424675 46 dbSNP
rs1445133470 48 dbSNP
rs1453861720 53 dbSNP
rs1222901734 54 dbSNP
rs1486704437 55 dbSNP
rs2303719 59 dbSNP
rs1477110900 65 dbSNP
rs1188346952 77 dbSNP
rs990878295 79 dbSNP
rs1477584125 99 dbSNP
rs1397797486 110 dbSNP
rs760566158 110 dbSNP
rs1406843118 117 dbSNP
rs1324177314 124 dbSNP
rs1349212822 127 dbSNP
rs1343281460 132 dbSNP
rs1433756876 150 dbSNP
rs1299428103 156 dbSNP
rs559483202 157 dbSNP
rs772027693 161 dbSNP
rs1217586576 163 dbSNP
rs1034583601 175 dbSNP
rs541168583 176 dbSNP
rs1225861777 179 dbSNP
rs1358955557 181 dbSNP
rs1229226999 188 dbSNP
rs1289865763 201 dbSNP
rs1000057251 206 dbSNP
rs904436090 228 dbSNP
rs1263935691 235 dbSNP
rs1326428067 238 dbSNP
rs1488103923 241 dbSNP
rs1314069978 243 dbSNP
rs112271669 247 dbSNP
rs1473687831 256 dbSNP
rs1353046618 263 dbSNP
rs1163615611 267 dbSNP
rs1412989621 270 dbSNP
rs187188245 273 dbSNP
rs1403481797 277 dbSNP
rs561878725 286 dbSNP
rs1360566006 291 dbSNP
rs890081585 292 dbSNP
rs1410093142 293 dbSNP
rs1051397593 294 dbSNP
rs111490138 295 dbSNP
rs968962819 314 dbSNP
rs1038260356 315 dbSNP
rs1242899809 326 dbSNP
rs1287331796 331 dbSNP
rs1353134732 333 dbSNP
rs1214518727 340 dbSNP
rs549119039 348 dbSNP
rs576255245 351 dbSNP
rs942244678 352 dbSNP
rs755426934 357 dbSNP
rs1476205151 359 dbSNP
rs1160429515 363 dbSNP
rs1380817371 365 dbSNP
rs751966084 369 dbSNP
rs1403921732 372 dbSNP
rs1333958750 373 dbSNP
rs571877149 373 dbSNP
rs1021845554 374 dbSNP
rs1008154134 378 dbSNP
rs1047440 379 dbSNP
rs1483540093 380 dbSNP
rs772814173 381 dbSNP
rs1253099876 383 dbSNP
rs1030900822 384 dbSNP
rs1238059453 388 dbSNP
rs1257780084 392 dbSNP
rs182269174 394 dbSNP
rs897907348 399 dbSNP
rs577655209 400 dbSNP
rs1266493866 413 dbSNP
rs1459851938 416 dbSNP
rs1235707590 417 dbSNP
rs776462319 420 dbSNP
rs888374621 423 dbSNP
rs553045598 426 dbSNP
rs151327162 427 dbSNP
rs1171686968 428 dbSNP
rs567670916 433 dbSNP
rs538011771 434 dbSNP
rs1332381712 435 dbSNP
rs1326464396 438 dbSNP
rs1400226798 439 dbSNP
rs1057359022 446 dbSNP
rs1445153038 448 dbSNP
rs1303543549 454 dbSNP
rs1331798404 457 dbSNP
rs1029942639 460 dbSNP
rs1390557260 465 dbSNP
rs1391229197 468 dbSNP
rs995882995 469 dbSNP
rs1327804071 470 dbSNP
rs1459859033 471 dbSNP
rs1415758543 473 dbSNP
rs536336053 474 dbSNP
rs1200312215 479 dbSNP
rs938450796 484 dbSNP
rs1258411476 485 dbSNP
rs1457285504 490 dbSNP
rs142436386 504 dbSNP
rs1365694694 505 dbSNP
rs977093803 510 dbSNP
rs1269347665 524 dbSNP
rs968344822 527 dbSNP
rs914827179 529 dbSNP
rs1037419574 532 dbSNP
rs1197541871 537 dbSNP
rs191645536 542 dbSNP
rs1478563966 560 dbSNP
rs1171861054 571 dbSNP
rs1423311743 578 dbSNP
rs953747261 590 dbSNP
rs1030534879 597 dbSNP
rs1392066637 599 dbSNP
rs997638714 600 dbSNP
rs962108289 610 dbSNP
rs1014932233 611 dbSNP
rs1006194344 617 dbSNP
rs879492539 619 dbSNP
rs1045459276 625 dbSNP
rs1317122180 629 dbSNP
rs1224948872 630 dbSNP
rs1271982916 631 dbSNP
rs1208735359 633 dbSNP
rs1488726531 633 dbSNP
rs1266086075 637 dbSNP
rs949602675 641 dbSNP
rs1193988875 645 dbSNP
rs1261998685 645 dbSNP
rs1427174253 654 dbSNP
rs918195727 656 dbSNP
rs1369554413 658 dbSNP
rs1055532235 659 dbSNP
rs1362579890 664 dbSNP
rs529079586 678 dbSNP
rs10077291 679 dbSNP
rs1237930006 685 dbSNP
rs1360123727 691 dbSNP
rs925284077 692 dbSNP
rs1314535804 699 dbSNP
rs1322277672 701 dbSNP
rs572186220 706 dbSNP
rs1243930344 714 dbSNP
rs1438622278 716 dbSNP
rs1355295742 717 dbSNP
rs1056968413 722 dbSNP
rs1262107834 723 dbSNP
rs1183980349 726 dbSNP
rs1484651578 726 dbSNP
rs1257244320 734 dbSNP
rs938462118 736 dbSNP
rs750515439 740 dbSNP
rs1393560058 741 dbSNP
rs1420457183 741 dbSNP
rs1158049823 748 dbSNP
rs187109335 749 dbSNP
rs1467728305 752 dbSNP
rs148407443 757 dbSNP
rs1379676600 760 dbSNP
rs947103487 775 dbSNP
rs1451621707 778 dbSNP
rs1312913211 782 dbSNP
rs914274298 783 dbSNP
rs1157009898 789 dbSNP
rs905522770 791 dbSNP
rs147764630 793 dbSNP
rs1211846608 795 dbSNP
rs376567957 798 dbSNP
rs1452965886 803 dbSNP
rs1240572661 818 dbSNP
rs561647407 818 dbSNP
rs964368527 823 dbSNP
rs923481990 825 dbSNP
rs1178123088 827 dbSNP
rs976231980 833 dbSNP
rs1405831721 836 dbSNP
rs962160240 838 dbSNP
rs747655472 840 dbSNP
rs543581714 843 dbSNP
rs1177124101 847 dbSNP
rs1358791667 848 dbSNP
rs1469165247 855 dbSNP
rs575866741 858 dbSNP
rs952219381 864 dbSNP
rs1047907368 865 dbSNP
rs1278477458 865 dbSNP
rs529361483 865 dbSNP
rs1204177187 872 dbSNP
rs181624873 876 dbSNP
rs1013799936 877 dbSNP
rs564029040 879 dbSNP
rs894400829 880 dbSNP
rs1370004041 881 dbSNP
rs938266706 883 dbSNP
rs776865630 888 dbSNP
rs1298190692 893 dbSNP
rs1035577495 897 dbSNP
rs1191845478 912 dbSNP
rs925285274 914 dbSNP
rs1479546338 915 dbSNP
rs1002726643 919 dbSNP
rs1432850158 919 dbSNP
rs1425456283 931 dbSNP
rs12520233 934 dbSNP
rs1316386567 935 dbSNP
rs1352681726 935 dbSNP
rs1344497578 939 dbSNP
rs1221263061 940 dbSNP
rs1041561871 945 dbSNP
rs541407180 946 dbSNP
rs945452836 948 dbSNP
rs947155681 951 dbSNP
rs760531547 953 dbSNP
rs1323959527 958 dbSNP
rs892876960 964 dbSNP
rs933119462 965 dbSNP
rs923098061 966 dbSNP
rs13436337 983 dbSNP
rs1167036596 984 dbSNP
rs1417310662 1004 dbSNP
rs931610330 1020 dbSNP
rs1433206231 1037 dbSNP
rs923562698 1044 dbSNP
rs772040707 1046 dbSNP
rs964998722 1047 dbSNP
rs976326782 1063 dbSNP
rs1015917434 1066 dbSNP
rs1187592864 1067 dbSNP
rs1299720355 1067 dbSNP
rs940931557 1068 dbSNP
rs553298537 1074 dbSNP
rs377163112 1076 dbSNP
rs371677396 1078 dbSNP
rs1430468038 1082 dbSNP
rs574058264 1092 dbSNP
rs1191769718 1093 dbSNP
rs1403736729 1093 dbSNP
rs1229355884 1101 dbSNP
rs1291654639 1105 dbSNP
rs1218881453 1106 dbSNP
rs952166188 1108 dbSNP
rs1026102238 1109 dbSNP
rs1287011605 1113 dbSNP
rs1013349783 1118 dbSNP
rs1485722293 1133 dbSNP
rs1240102473 1135 dbSNP
rs1281957281 1145 dbSNP
rs1473637452 1159 dbSNP
rs1208315953 1160 dbSNP
rs1024105401 1167 dbSNP
rs896617567 1168 dbSNP
rs370540192 1175 dbSNP
rs533053745 1176 dbSNP
rs1399711838 1187 dbSNP
rs868569330 1201 dbSNP
rs866642395 1203 dbSNP
rs960968313 1227 dbSNP
rs1342680565 1231 dbSNP
rs1337443772 1233 dbSNP
rs1035001215 1235 dbSNP
rs1449187010 1238 dbSNP
rs1269523893 1239 dbSNP
rs1381135627 1242 dbSNP
rs1430034172 1245 dbSNP
rs945420507 1251 dbSNP
rs892544580 1265 dbSNP
rs1350268478 1276 dbSNP
rs1203652688 1282 dbSNP
rs1280967957 1298 dbSNP
rs781515456 1302 dbSNP
rs1002820349 1304 dbSNP
rs1413222892 1310 dbSNP
rs1204056827 1313 dbSNP
rs903095768 1315 dbSNP
rs934093832 1316 dbSNP
rs1020171308 1322 dbSNP
rs537645025 1337 dbSNP
rs1011788610 1354 dbSNP
rs1469157240 1360 dbSNP
rs1156499174 1368 dbSNP
rs1235575426 1378 dbSNP
rs367591018 1383 dbSNP
rs1470508766 1389 dbSNP
rs1336416359 1398 dbSNP
rs1404559774 1402 dbSNP
rs1050572319 1415 dbSNP
rs558388558 1416 dbSNP
rs1449601784 1418 dbSNP
rs559184446 1419 dbSNP
rs1335297430 1421 dbSNP
rs1171646879 1422 dbSNP
rs1236953377 1433 dbSNP
rs540096346 1438 dbSNP
rs1417925494 1445 dbSNP
rs563544739 1449 dbSNP
rs1262223866 1457 dbSNP
rs1040007747 1458 dbSNP
rs940985733 1464 dbSNP
rs566389431 1466 dbSNP
rs908094707 1471 dbSNP
rs1049226682 1474 dbSNP
rs984447840 1477 dbSNP
rs1480529882 1479 dbSNP
rs564263695 1500 dbSNP
rs188849005 1501 dbSNP
rs1467489386 1505 dbSNP
rs916688572 1517 dbSNP
rs1025993339 1526 dbSNP
rs1485171520 1529 dbSNP
rs1325544297 1532 dbSNP
rs185660349 1535 dbSNP
rs991878366 1537 dbSNP
rs74667944 1541 dbSNP
rs538255878 1543 dbSNP
rs1047484 1546 dbSNP
rs1220225995 1549 dbSNP
rs1251888909 1550 dbSNP
rs904095071 1551 dbSNP
rs1193593421 1554 dbSNP
rs1337115740 1570 dbSNP
rs1272142030 1573 dbSNP
rs1490361491 1575 dbSNP
rs1198298775 1583 dbSNP
rs752198479 1585 dbSNP
rs1266310011 1589 dbSNP
rs1233870218 1591 dbSNP
rs1479044842 1619 dbSNP
rs1171485659 1626 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000306467.5 | 3UTR | AUCUUAUUUACUUUAUGCUACCUCUCCCACACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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