pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol ATG7   
Synonyms APG7-LIKE, APG7L, GSA7
Description autophagy related 7
Transcript NM_001136031   
Other Transcripts NM_001144912 , NM_006395   
Expression
Putative miRNA Targets on ATG7
3'UTR of ATG7
(miRNA target sites are highlighted)
>ATG7|NM_001136031|3'UTR
   1 GATGGCCCCGCTGTGGGGCTGACTTCTCCCCGGCCGCCTGCTGAGGAGCTCTCCATCGCCAGAGCAGGACTGCTGACCCC
  81 AGGCCTGGTGATTCTGGGCCCCTCCTCCATACCCCGAGGTCTGGGATTCCCCCCTCTGCTGCCCAGGAGTGGCCAGTGTT
 161 CGGCGTTGCTCGGGATTCAAGATACCACCAGTTCAGAGCTAAATAATAACCTTGGCCTTGGCCTTGCTATTGACCTGGGA
 241 CTTGGTCCTCCATGCAGTTTTTATTTCTTGTCACAGTGACTGATAGCCATCCCCCAGGATCCTTTCCCCTTGGCCCTGAG
 321 GGGGTGACCCAACACAGACCAAATGGGGAAATGAGCAACCAGCTCCTGCCCAGAGCCACTGCGGGAGGTGGCACCCTCAT
 401 CCCCGGAATGTGCTGCCCACCGCACCGCAGGCTCCTCCTGTGGGGGCCCTGGGCATGGGTGAGGGTGGGACCCCGTGAGC
 481 GCACTGCACCCTGGCCCTGGTGGAGCGGGAGGAGGAGGAGAGCCGAGCTGGGTACGAGACTAAAGGGCCCACATGACCCA
 561 GTGACGCCAGATTTCCACCAAGGACTGAGTGAGCTGCTCAGACATGGCTTTCTGCCTCCCAGCCTGTCCTCCACTGTGGG
 641 CATAGCATCTGTGCCTGCCTGCCTGCTTGAGGGAGAGGAGTTTCTGCTGCTGCCTTGAGCTGGGGGGAAGAGCCCAGGGG
 721 CAGATCCTGGCAGCTGCCTGGATGGGGCTCCTCCCTGCCCTTATGAGCAGGCCAGGCCCAGAAAGGCCGAGCCTGGGCTG
 801 CCTTCCTGCCCCAGCCGAGGGAGGGGTCAGACGGCTCTACCATGGGTAACTCAGGCAAGAGCTGGTTTTCCTCTTTATTC
 881 TGGGTGTGTGCAGCTGTGAGGCCCCAACCCAGGAGAGGCCATGGCCTAGGTACCTGTGACCACCCTGCCCCCGTGTAGAG
 961 GGCATCGTCTTTCCTGCTATTTTATTCTTTCAGCTTTTGTCTTAGGCCCAGAATCAAAGTGAAAATTGAGTCGAGCTGAC
1041 CCTTACAACAGTAGGATTTAGTAGGGTAGATTTCAAATGAGGCTTCGCTTCTCCCAAAGTAGCCAGTCCAAGTTCCAGTG
1121 GCTGTCGTTCAGCTCATGGGAGCTTCATGGGGACACAGCCGGCACAGGTGCAGGGCCCGAGTCCGCCCACCCAGCCTGGC
1201 GCTGAAACTGCACACGTACACTATGTGGTTTAAGAGCACTTTATTATTGTTCTTAAGGCTACTTTTAAGTACAAAAAAAG
1281 ATGGCCTGCCAAACCTTTTTTTTTCTTCTTCCAGGAAAAACAGGCCACAGAGAATGGTATATTACAGATTTACACACATG
1361 AAGAGAAGGTCAGAGCGCACTGCAGGCAGCGCGGCTCTGGGAAGAACTTCACGGAGCCCCTTCTTAGAGCAGGGAGGGGG
1441 CTTTCTCAGTGAAATGTTTGGTTTTCTGCTGCCTCCTCTGCCCCAGGCCCCCCTCCAGGGTACTGCCTATCCCAGATAGG
1521 TCAGTGCACCAGGGACCCGGCCGCCAGCACCGCCGACCCCTCCCAGAGTGACGCCCTTGTTCACTGACAAAGAGACCTGT
1601 CCCAGGAGTGTCCTCCACCGAGCCGGTCAGCTGTGGGTGGTTTTCCTGTTACGACGCTCAGTAGCCTGTAGCAATAACAA
1681 ACTCGTGGCTATGAATGCAGATGCAGTGTTCTCATAGAATAACTGTTCCTGCACTTTTACAGACAAATCTACGACAAAAA
1761 AAAAGATCAACTTTTTTTTTCCGAACAACAAAAAAAATGAATGATTACAATAGGAAAGGGAAAAATTAAATAGCTACATA
1841 TCATTAACAAATTAATGTTCTTCAAAAAATACCTACAAATTTCTCTGTACATTCTTTACGCACAGCGTAACGATGGTCTC
1921 AAAATCACCCATATAGAAAAGTGTTCTCAACGATTTTTCCTACAGAAAATATAGGGGCCTGAATGCCAAAGCTTGGAAGC
2001 CCAGTACAGTGGGAGTGAAATGTGTGCGGGGCAAGGAGAAGGGCTTTTCTTTCCTCCACTTTTCAAAGGCCTGCAGCCAC
2081 TCTGTGACTACAAGAGCCAGTCCTCCGACCTTTTCACCCAGTGCCAATTTCCAAAATTCAACAGCTAAAAACTGTAAAAC
2161 CGGGGGTCATACGGTGTGCAGAGTCCACAAAGCCTTGCAGGTGAGGTGACCACGCCCACGTCACCTGGTCAGGTGCCATC
2241 GTCGTGAGCCTCTGGTGGGCCAGGTGGGACACAGCACACCCCAGGGGGAGGGGATAGAAACGCTCATTGACCAAAAAGGA
2321 GCAGCTGTGACCTCCACAGCTGTGTCTGTCATGCTTGCTTCATCTAATTTCTAGTTAGTAGCTATTAATATAGCAAATAA
2401 TAAATGCAGTAATAACAGTATAAAGTCAGAGGAATGTATACTGCCTTGGCCCCAGCGTACGAGGAAGCGTATAAAACACC
2481 ATATCACAGATTGTCTGTCAGTAATCTGCTGTTCAGCCAAGAGAGTTCAAAGGGAGCAGTTTCTGCATGTAGGGAAGTTG
2561 GAAGACACAAACCCCACCTCCCCTGGGAGCTTGTAACAAAGCAGACAGGGATGCAAAAATAAATGATGTCAGCCTGCAGC
2641 CAAACTCCAGCATCCCACACCGCAGCTGACCCACTGCTCATCGCGAGGGCCTGCCAGGAGCTGGCCTCCCGCACTACTTG
2721 TGAGTAAAGTGAATATCAAATACCAATCTTAGAGTACAACTGTACCAGCAGTAAGTATATCTAGGACTGTAACTGACAAA
2801 AATAAACTAATTCTGAAAAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gggugGUCGACGAGGGACCGGGu 5'
               || |||| ||||||||| 
Target 5' gagcgCA-CTGCACCCTGGCCCt 3'
477 - 498 169.00 -29.20
2
miRNA  3' ggGUGGUC-----GACGAGGGACCGGGu 5'
            | ||||     :| | ||:|||||| 
Target 5' tcCCCCAGGATCCTTTCCCCTTGGCCCt 3'
290 - 317 145.00 -27.10
3
miRNA  3' ggguggucGACGAGGGACCGGGu 5'
                  |||  ||:|||||| 
Target 5' aatgtataCTG--CCTTGGCCCc 3'
2433 - 2453 139.00 -19.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM1579665 1 COSMIC
COSN30447362 10 COSMIC
COSN31504883 31 COSMIC
COSN28613923 32 COSMIC
COSN32073017 34 COSMIC
COSN31559956 68 COSMIC
COSN30151916 69 COSMIC
COSN18728136 86 COSMIC
COSN31525947 95 COSMIC
COSN30164193 97 COSMIC
COSN30501218 98 COSMIC
COSN31957564 125 COSMIC
COSN16782694 149 COSMIC
COSN24384430 192 COSMIC
COSN28192860 243 COSMIC
COSN15668350 1113 COSMIC
COSN31566091 1275 COSMIC
COSN20703596 1334 COSMIC
COSN31548999 1351 COSMIC
COSN6571068 1496 COSMIC
COSN30542406 1500 COSMIC
COSN31536432 1550 COSMIC
COSN31962017 1552 COSMIC
COSN26649544 1627 COSMIC
COSN31536878 1677 COSMIC
COSN31518695 1734 COSMIC
COSN30176516 1754 COSMIC
COSN31571562 1758 COSMIC
COSN1265674 1765 COSMIC
COSN15725059 1829 COSMIC
COSN1908442 1894 COSMIC
COSN31522243 1952 COSMIC
COSN31562063 2028 COSMIC
COSN31513127 2214 COSMIC
COSN20720486 2302 COSMIC
COSN31549895 2354 COSMIC
COSN30161853 2422 COSMIC
COSN31533149 2442 COSMIC
COSN31522993 2760 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1468327825 3 dbSNP
rs1197137896 4 dbSNP
rs1213853887 5 dbSNP
rs1254484975 6 dbSNP
rs1447342954 7 dbSNP
rs561289211 10 dbSNP
rs370047460 11 dbSNP
rs1430190148 14 dbSNP
rs756988440 15 dbSNP
rs895136766 17 dbSNP
rs754198447 19 dbSNP
rs373372539 20 dbSNP
rs757821274 21 dbSNP
rs1396935199 22 dbSNP
rs764779262 25 dbSNP
rs750025279 27 dbSNP
rs1362775742 30 dbSNP
rs1216776972 31 dbSNP
rs14016 32 dbSNP
rs187623536 33 dbSNP
rs553944184 35 dbSNP
rs200755603 36 dbSNP
rs202109061 37 dbSNP
rs748311768 38 dbSNP
rs770007774 40 dbSNP
rs1486565789 42 dbSNP
rs779323719 43 dbSNP
rs745412225 44 dbSNP
rs897625885 46 dbSNP
rs963663439 50 dbSNP
rs773276200 53 dbSNP
rs545887074 56 dbSNP
rs974975866 58 dbSNP
rs921628806 59 dbSNP
rs565480766 63 dbSNP
rs577325784 65 dbSNP
rs144186331 69 dbSNP
rs987113193 75 dbSNP
rs1376240711 81 dbSNP
rs1172991562 82 dbSNP
rs1046593 86 dbSNP
rs530065937 92 dbSNP
rs1046595 95 dbSNP
rs986084673 97 dbSNP
rs765563441 99 dbSNP
rs1419771891 101 dbSNP
rs1192572222 105 dbSNP
rs548160231 112 dbSNP
rs560079065 116 dbSNP
rs1394374188 117 dbSNP
rs527799780 118 dbSNP
rs988827394 125 dbSNP
rs914170614 128 dbSNP
rs1307922560 129 dbSNP
rs1395385452 129 dbSNP
rs552214729 131 dbSNP
rs1287281488 133 dbSNP
rs756603246 134 dbSNP
rs570598186 135 dbSNP
rs982311016 139 dbSNP
rs1382815782 146 dbSNP
rs928366610 149 dbSNP
rs937113206 158 dbSNP
rs538044270 162 dbSNP
rs937287788 163 dbSNP
rs757490608 165 dbSNP
rs73812469 166 dbSNP
rs1316645376 172 dbSNP
rs568329574 173 dbSNP
rs1476649719 177 dbSNP
rs1419340845 183 dbSNP
rs941692187 186 dbSNP
rs949389178 191 dbSNP
rs1036666623 199 dbSNP
rs1253985862 201 dbSNP
rs1197555087 202 dbSNP
rs1480822217 205 dbSNP
rs897743178 206 dbSNP
rs780126934 208 dbSNP
rs753871308 209 dbSNP
rs1046796499 210 dbSNP
rs1257210991 210 dbSNP
rs1337228809 210 dbSNP
rs1273825785 211 dbSNP
rs1244142031 212 dbSNP
rs1205183147 216 dbSNP
rs1338846474 219 dbSNP
rs1309749469 222 dbSNP
rs1392530073 223 dbSNP
rs1372995167 229 dbSNP
rs1329769491 237 dbSNP
rs535714394 240 dbSNP
rs1051636692 250 dbSNP
rs553825991 251 dbSNP
rs1366252328 254 dbSNP
rs1467080795 257 dbSNP
rs572024660 260 dbSNP
rs1016458740 265 dbSNP
rs755227593 265 dbSNP
rs1237267582 266 dbSNP
rs899321329 268 dbSNP
rs1007622561 273 dbSNP
rs1418246892 286 dbSNP
rs1032291729 287 dbSNP
rs1029268518 288 dbSNP
rs539548285 295 dbSNP
rs1365732072 296 dbSNP
rs954906923 301 dbSNP
rs1454552088 306 dbSNP
rs987186543 311 dbSNP
rs1353628533 316 dbSNP
rs1307458700 317 dbSNP
rs1164293827 318 dbSNP
rs1443551848 321 dbSNP
rs958002621 325 dbSNP
rs1326134506 330 dbSNP
rs1009587577 332 dbSNP
rs1387897348 333 dbSNP
rs1159797548 334 dbSNP
rs371591489 336 dbSNP
rs1021592011 345 dbSNP
rs1392290956 345 dbSNP
rs781382076 348 dbSNP
rs779324029 351 dbSNP
rs1327110199 360 dbSNP
rs1455396465 378 dbSNP
rs1253446509 381 dbSNP
rs779160130 383 dbSNP
rs557823495 384 dbSNP
rs925675848 389 dbSNP
rs937192850 391 dbSNP
rs958433522 406 dbSNP
rs991210292 411 dbSNP
rs1284502198 416 dbSNP
rs908982391 418 dbSNP
rs941650707 420 dbSNP
rs1237201604 421 dbSNP
rs991242202 422 dbSNP
rs577410716 423 dbSNP
rs544767408 427 dbSNP
rs145484725 428 dbSNP
rs1400074420 431 dbSNP
rs1331967163 432 dbSNP
rs1296245111 434 dbSNP
rs1052015094 435 dbSNP
rs1038207489 445 dbSNP
rs905327929 450 dbSNP
rs1477521159 451 dbSNP
rs1261192303 457 dbSNP
rs1213591182 461 dbSNP
rs1486285881 466 dbSNP
rs888977357 475 dbSNP
rs745998992 476 dbSNP
rs1271540404 480 dbSNP
rs866835779 481 dbSNP
rs114843674 491 dbSNP
rs1419453988 492 dbSNP
rs1275791729 507 dbSNP
rs1187426751 508 dbSNP
rs1359688702 508 dbSNP
rs1415990110 509 dbSNP
rs542088010 512 dbSNP
rs1009976153 513 dbSNP
rs1412544585 518 dbSNP
rs1020994443 525 dbSNP
rs1165804210 526 dbSNP
rs547484367 529 dbSNP
rs1460970846 530 dbSNP
rs770750083 532 dbSNP
rs113198581 536 dbSNP
rs1033946724 537 dbSNP
rs1237406342 541 dbSNP
rs1186096664 543 dbSNP
rs1439896656 545 dbSNP
rs1292247690 548 dbSNP
rs1198842123 551 dbSNP
rs959506622 554 dbSNP
rs1255540271 555 dbSNP
rs1379352648 556 dbSNP
rs1283519956 558 dbSNP
rs117150978 566 dbSNP
rs1032724736 567 dbSNP
rs1331831733 577 dbSNP
rs892938 581 dbSNP
rs1398354524 583 dbSNP
rs991317390 585 dbSNP
rs1413240165 588 dbSNP
rs564584992 594 dbSNP
rs1471444625 597 dbSNP
rs531440144 605 dbSNP
rs971362769 606 dbSNP
rs763442201 608 dbSNP
rs972135366 609 dbSNP
rs1456753110 612 dbSNP
rs191094742 615 dbSNP
rs1235941407 617 dbSNP
rs769630992 621 dbSNP
rs1321776419 623 dbSNP
rs1288538525 624 dbSNP
rs1483235148 627 dbSNP
rs1187001118 631 dbSNP
rs1352780614 641 dbSNP
rs987320268 642 dbSNP
rs908428473 644 dbSNP
rs1328157079 652 dbSNP
rs1476339012 652 dbSNP
rs1437474874 661 dbSNP
rs1349305451 662 dbSNP
rs568135670 663 dbSNP
rs1037667169 664 dbSNP
rs1158612825 667 dbSNP
rs1381447931 667 dbSNP
rs529208332 671 dbSNP
rs1053583890 674 dbSNP
rs555081219 678 dbSNP
rs1173103183 681 dbSNP
rs1355657997 684 dbSNP
rs1434455087 689 dbSNP
rs774997541 690 dbSNP
rs932049669 703 dbSNP
rs1050605521 704 dbSNP
rs945505749 708 dbSNP
rs1042769205 718 dbSNP
rs1351162790 719 dbSNP
rs1416311467 721 dbSNP
rs547673419 722 dbSNP
rs1009038564 728 dbSNP
rs1292052423 734 dbSNP
rs1042379549 737 dbSNP
rs906507673 740 dbSNP
rs903394831 741 dbSNP
rs1361322140 743 dbSNP
rs1284425182 748 dbSNP
rs1418417762 749 dbSNP
rs1003973706 750 dbSNP
rs1360589173 751 dbSNP
rs1033894387 753 dbSNP
rs565718419 757 dbSNP
rs1212320271 761 dbSNP
rs1177280661 765 dbSNP
rs1433021528 769 dbSNP
rs1423995482 770 dbSNP
rs4684789 771 dbSNP
rs1005714032 773 dbSNP
rs1263290354 774 dbSNP
rs1215725644 776 dbSNP
rs537256751 781 dbSNP
rs1282134904 785 dbSNP
rs1017151495 786 dbSNP
rs1209866340 787 dbSNP
rs963437664 789 dbSNP
rs1216604069 790 dbSNP
rs1341144849 792 dbSNP
rs971868110 794 dbSNP
rs1026496325 797 dbSNP
rs142567626 812 dbSNP
rs1211005710 817 dbSNP
rs774188512 818 dbSNP
rs1465854434 819 dbSNP
rs867851510 822 dbSNP
rs1173449659 825 dbSNP
rs1466866484 826 dbSNP
rs1423673567 833 dbSNP
rs569714476 833 dbSNP
rs908458997 834 dbSNP
rs751670665 839 dbSNP
rs1182440004 846 dbSNP
rs1188398491 847 dbSNP
rs1254040054 851 dbSNP
rs1200681934 856 dbSNP
rs1318907911 863 dbSNP
rs761591229 864 dbSNP
rs1391299299 871 dbSNP
rs1216844737 879 dbSNP
rs151291079 887 dbSNP
rs920575019 890 dbSNP
rs1395974553 894 dbSNP
rs1377345544 896 dbSNP
rs1172155406 897 dbSNP
rs1400543981 898 dbSNP
rs868694824 899 dbSNP
rs932080801 900 dbSNP
rs1397198773 902 dbSNP
rs767947047 903 dbSNP
rs1050510603 904 dbSNP
rs1165320508 905 dbSNP
rs911957446 906 dbSNP
rs944872665 908 dbSNP
rs750828634 910 dbSNP
rs184063041 912 dbSNP
rs577063912 914 dbSNP
rs945218674 915 dbSNP
rs1197050588 916 dbSNP
rs1290171572 918 dbSNP
rs1365824392 922 dbSNP
rs796120554 924 dbSNP
rs1244651559 925 dbSNP
rs1042453974 930 dbSNP
rs1320465848 931 dbSNP
rs1233565100 932 dbSNP
rs906614533 934 dbSNP
rs1241288048 939 dbSNP
rs574643826 942 dbSNP
rs1330250758 943 dbSNP
rs894132180 953 dbSNP
rs1012510886 954 dbSNP
rs9855986 961 dbSNP
rs1055162058 962 dbSNP
rs895396006 963 dbSNP
rs1440065081 965 dbSNP
rs1379472281 966 dbSNP
rs1218021165 967 dbSNP
rs1005827957 968 dbSNP
rs1468093040 974 dbSNP
rs1209295484 975 dbSNP
rs1192237117 978 dbSNP
rs1017099203 980 dbSNP
rs762221682 985 dbSNP
rs897292449 995 dbSNP
rs1353364891 997 dbSNP
rs1307535957 1000 dbSNP
rs1236381072 1002 dbSNP
rs994762699 1003 dbSNP
rs111714834 1008 dbSNP
rs1301598677 1025 dbSNP
rs1385734290 1027 dbSNP
rs1028213310 1028 dbSNP
rs1299900073 1028 dbSNP
rs953377643 1031 dbSNP
rs986090846 1032 dbSNP
rs572138485 1033 dbSNP
rs911971743 1034 dbSNP
rs1398653630 1041 dbSNP
rs546165622 1043 dbSNP
rs1198507224 1045 dbSNP
rs1431496200 1047 dbSNP
rs1265442699 1048 dbSNP
rs1217900152 1051 dbSNP
rs944801033 1062 dbSNP
rs978033212 1065 dbSNP
rs1160652522 1070 dbSNP
rs1346237885 1072 dbSNP
rs954621219 1077 dbSNP
rs564289857 1078 dbSNP
rs936286823 1080 dbSNP
rs1323754252 1082 dbSNP
rs531854989 1087 dbSNP
rs1436904066 1088 dbSNP
rs559125415 1088 dbSNP
rs1278796148 1090 dbSNP
rs894709525 1096 dbSNP
rs1402718592 1098 dbSNP
rs1172150718 1103 dbSNP
rs948395377 1108 dbSNP
rs1425812876 1113 dbSNP
rs964586135 1115 dbSNP
rs989328951 1122 dbSNP
rs147233967 1124 dbSNP
rs1045371687 1125 dbSNP
rs1190293773 1128 dbSNP
rs915164013 1128 dbSNP
rs966532821 1129 dbSNP
rs1278370057 1131 dbSNP
rs1199490569 1134 dbSNP
rs1320999635 1138 dbSNP
rs978339094 1142 dbSNP
rs112471488 1143 dbSNP
rs561931118 1144 dbSNP
rs939454267 1150 dbSNP
rs1055109257 1155 dbSNP
rs1452747472 1157 dbSNP
rs898338691 1159 dbSNP
rs916611096 1161 dbSNP
rs140675250 1162 dbSNP
rs1231595695 1168 dbSNP
rs1038593544 1176 dbSNP
rs897401979 1177 dbSNP
rs547760157 1179 dbSNP
rs1051742144 1180 dbSNP
rs1465160695 1182 dbSNP
rs565957878 1185 dbSNP
rs773571852 1186 dbSNP
rs1017321383 1190 dbSNP
rs1460438145 1191 dbSNP
rs1237215530 1200 dbSNP
rs145825578 1201 dbSNP
rs966551359 1202 dbSNP
rs551370298 1216 dbSNP
rs924661228 1217 dbSNP
rs1333705725 1218 dbSNP
rs1010533499 1221 dbSNP
rs1270278107 1222 dbSNP
rs1229920719 1224 dbSNP
rs569519872 1229 dbSNP
rs1289172745 1235 dbSNP
rs967064715 1236 dbSNP
rs1283572676 1238 dbSNP
rs756026461 1240 dbSNP
rs574090098 1241 dbSNP
rs1332232068 1243 dbSNP
rs1446331240 1243 dbSNP
rs1231509217 1244 dbSNP
rs1352802354 1244 dbSNP
rs1325639473 1247 dbSNP
rs1045829962 1250 dbSNP
rs1413665568 1255 dbSNP
rs1295263813 1263 dbSNP
rs1162296895 1265 dbSNP
rs906853658 1266 dbSNP
rs369442149 1270 dbSNP
rs1195665521 1271 dbSNP
rs1230623977 1273 dbSNP
rs939651062 1273 dbSNP
rs1271524445 1275 dbSNP
rs1223093934 1277 dbSNP
rs1036799104 1280 dbSNP
rs977947325 1288 dbSNP
rs1220183740 1296 dbSNP
rs898208470 1296 dbSNP
rs995346277 1296 dbSNP
rs1206356332 1303 dbSNP
rs1239639056 1303 dbSNP
rs1309757881 1303 dbSNP
rs1371428180 1304 dbSNP
rs560633866 1305 dbSNP
rs927809908 1305 dbSNP
rs1349431240 1306 dbSNP
rs537152211 1306 dbSNP
rs1185151753 1309 dbSNP
rs1369622560 1312 dbSNP
rs1422063408 1329 dbSNP
rs960765375 1331 dbSNP
rs990871824 1336 dbSNP
rs916684813 1337 dbSNP
rs941303203 1338 dbSNP
rs765935220 1339 dbSNP
rs779079754 1340 dbSNP
rs555162193 1341 dbSNP
rs1394283753 1342 dbSNP
rs752878909 1344 dbSNP
rs1431364837 1347 dbSNP
rs1405302011 1359 dbSNP
rs758644300 1360 dbSNP
rs1375062716 1364 dbSNP
rs966085664 1368 dbSNP
rs1197143748 1375 dbSNP
rs1413242758 1376 dbSNP
rs999239031 1377 dbSNP
rs568364610 1378 dbSNP
rs957421026 1385 dbSNP
rs1280984830 1388 dbSNP
rs1341083044 1388 dbSNP
rs373233928 1391 dbSNP
rs1038722907 1393 dbSNP
rs541552078 1394 dbSNP
rs745655467 1395 dbSNP
rs1280149295 1410 dbSNP
rs970311482 1414 dbSNP
rs981728636 1422 dbSNP
rs1010565479 1423 dbSNP
rs1022421065 1424 dbSNP
rs1208205778 1429 dbSNP
rs966632827 1433 dbSNP
rs1427935008 1438 dbSNP
rs1478539793 1441 dbSNP
rs1263809834 1450 dbSNP
rs375948441 1452 dbSNP
rs1238991987 1455 dbSNP
rs1484738457 1455 dbSNP
rs928855332 1455 dbSNP
rs1442450689 1459 dbSNP
rs1034954633 1473 dbSNP
rs1211034980 1476 dbSNP
rs1311849890 1477 dbSNP
rs1261553967 1481 dbSNP
rs1220509094 1488 dbSNP
rs1318773092 1488 dbSNP
rs939703660 1489 dbSNP
rs1381034465 1490 dbSNP
rs1191893842 1493 dbSNP
rs960504684 1497 dbSNP
rs769766046 1501 dbSNP
rs1371248449 1509 dbSNP
rs1173896081 1511 dbSNP
rs1466719675 1513 dbSNP
rs1023689604 1514 dbSNP
rs1037071293 1516 dbSNP
rs1451321655 1518 dbSNP
rs779905433 1537 dbSNP
rs574492643 1539 dbSNP
rs554081826 1540 dbSNP
rs931047138 1541 dbSNP
rs1049611619 1543 dbSNP
rs1394183335 1544 dbSNP
rs918612823 1546 dbSNP
rs1200817750 1549 dbSNP
rs146630392 1552 dbSNP
rs1008450019 1553 dbSNP
rs546152688 1555 dbSNP
rs878870478 1558 dbSNP
rs766686673 1559 dbSNP
rs1381687861 1562 dbSNP
rs1324009792 1564 dbSNP
rs1228104551 1572 dbSNP
rs558137092 1574 dbSNP
rs1334222949 1581 dbSNP
rs1448540076 1584 dbSNP
rs912820767 1584 dbSNP
rs942840030 1587 dbSNP
rs1367970034 1589 dbSNP
rs778659371 1589 dbSNP
rs1460068845 1590 dbSNP
rs1351515851 1591 dbSNP
rs1039884588 1593 dbSNP
rs998876803 1596 dbSNP
rs1443764038 1600 dbSNP
rs1303328743 1604 dbSNP
rs1031626214 1605 dbSNP
rs1346105964 1606 dbSNP
rs900260177 1607 dbSNP
rs1440575760 1608 dbSNP
rs1011601525 1615 dbSNP
rs1022974658 1616 dbSNP
rs970216642 1620 dbSNP
rs563060970 1621 dbSNP
rs774018935 1625 dbSNP
rs902145629 1626 dbSNP
rs999216531 1629 dbSNP
rs1465868505 1646 dbSNP
rs1389170189 1649 dbSNP
rs1034894969 1653 dbSNP
rs576319889 1654 dbSNP
rs543935024 1656 dbSNP
rs972464462 1657 dbSNP
rs1012078277 1659 dbSNP
rs919572869 1664 dbSNP
rs1023512538 1666 dbSNP
rs1180001310 1667 dbSNP
rs1363438883 1667 dbSNP
rs186875727 1668 dbSNP
rs1452301130 1675 dbSNP
rs60599857 1685 dbSNP
rs1268154475 1689 dbSNP
rs974536157 1693 dbSNP
rs1490008883 1696 dbSNP
rs1288840783 1713 dbSNP
rs1217766266 1714 dbSNP
rs1025746493 1720 dbSNP
rs1049518774 1720 dbSNP
rs1332250807 1726 dbSNP
rs1157051516 1729 dbSNP
rs1283400987 1735 dbSNP
rs1403854747 1742 dbSNP
rs541211040 1743 dbSNP
rs1300035185 1745 dbSNP
rs1400372539 1749 dbSNP
rs1383989417 1750 dbSNP
rs114755647 1753 dbSNP
rs1378227190 1754 dbSNP
rs533275707 1754 dbSNP
rs1175770842 1755 dbSNP
rs1265968480 1756 dbSNP
rs879799623 1756 dbSNP
rs902464181 1756 dbSNP
rs1446721479 1757 dbSNP
rs542508272 1763 dbSNP
rs1202956959 1765 dbSNP
rs1369477965 1768 dbSNP
rs1263419765 1769 dbSNP
rs1320875536 1772 dbSNP
rs201810263 1772 dbSNP
rs1388861726 1773 dbSNP
rs1279953508 1779 dbSNP
rs1431396604 1781 dbSNP
rs1302484957 1782 dbSNP
rs1315989439 1783 dbSNP
rs999849234 1783 dbSNP
rs1468287039 1784 dbSNP
rs551337320 1784 dbSNP
rs1237804709 1785 dbSNP
rs1425885858 1787 dbSNP
rs1171921087 1790 dbSNP
rs397966587 1790 dbSNP
rs61586366 1790 dbSNP
rs565437662 1796 dbSNP
rs563302500 1797 dbSNP
rs771433120 1798 dbSNP
rs1467121588 1801 dbSNP
rs1011506520 1802 dbSNP
rs771853057 1803 dbSNP
rs1267704182 1808 dbSNP
rs1418296931 1810 dbSNP
rs1179860458 1813 dbSNP
rs1414500912 1814 dbSNP
rs1457803180 1816 dbSNP
rs1164361257 1819 dbSNP
rs747297831 1821 dbSNP
rs975536564 1825 dbSNP
rs1392897377 1831 dbSNP
rs914769012 1835 dbSNP
rs1246711389 1837 dbSNP
rs1268382967 1837 dbSNP
rs1383330198 1838 dbSNP
rs1314560954 1839 dbSNP
rs1402495324 1840 dbSNP
rs1450724340 1840 dbSNP
rs1459960816 1842 dbSNP
rs773617930 1851 dbSNP
rs1329645724 1852 dbSNP
rs1043841002 1858 dbSNP
rs1394966619 1860 dbSNP
rs1165571719 1861 dbSNP
rs1473299830 1862 dbSNP
rs765220541 1864 dbSNP
rs1396159655 1871 dbSNP
rs902262887 1875 dbSNP
rs1182556234 1879 dbSNP
rs1442421839 1880 dbSNP
rs1239675893 1884 dbSNP
rs934957481 1889 dbSNP
rs1390055306 1891 dbSNP
rs1270777617 1892 dbSNP
rs1286029506 1900 dbSNP
rs1351992827 1901 dbSNP
rs754690019 1907 dbSNP
rs1314148686 1908 dbSNP
rs1243988819 1912 dbSNP
rs1379367319 1914 dbSNP
rs905907855 1914 dbSNP
rs145976533 1921 dbSNP
rs1292207412 1922 dbSNP
rs896401460 1924 dbSNP
rs1334072117 1930 dbSNP
rs1012200902 1935 dbSNP
rs1326034502 1941 dbSNP
rs1425884947 1944 dbSNP
rs1365292233 1946 dbSNP
rs752495534 1951 dbSNP
rs530422684 1952 dbSNP
rs867640067 1953 dbSNP
rs898300582 1957 dbSNP
rs760998324 1959 dbSNP
rs1177481811 1964 dbSNP
rs767514099 1965 dbSNP
rs1230678586 1966 dbSNP
rs972967081 1969 dbSNP
rs995354913 1972 dbSNP
rs1027211094 1973 dbSNP
rs1490499430 1975 dbSNP
rs1291008257 1976 dbSNP
rs1219973409 1977 dbSNP
rs73812470 1988 dbSNP
rs1480162249 1989 dbSNP
rs1193894106 1993 dbSNP
rs1254215270 2000 dbSNP
rs1223433995 2001 dbSNP
rs1348585231 2008 dbSNP
rs796313318 2009 dbSNP
rs1276716491 2012 dbSNP
rs567008333 2014 dbSNP
rs1187308397 2016 dbSNP
rs1345404360 2017 dbSNP
rs985086735 2018 dbSNP
rs766890693 2019 dbSNP
rs1402223845 2021 dbSNP
rs1019599629 2025 dbSNP
rs532083410 2027 dbSNP
rs964248644 2028 dbSNP
rs534383588 2029 dbSNP
rs746633249 2032 dbSNP
rs914842655 2032 dbSNP
rs1354501760 2034 dbSNP
rs943778789 2040 dbSNP
rs1486686118 2045 dbSNP
rs1242519746 2056 dbSNP
rs976654251 2057 dbSNP
rs923753282 2058 dbSNP
rs9881151 2062 dbSNP
rs1310293997 2063 dbSNP
rs1224202188 2064 dbSNP
rs1322991803 2067 dbSNP
rs867275810 2072 dbSNP
rs1221006441 2074 dbSNP
rs1372010256 2078 dbSNP
rs1288678742 2080 dbSNP
rs893684508 2082 dbSNP
rs1343039922 2083 dbSNP
rs1338370903 2084 dbSNP
rs1311908151 2087 dbSNP
rs1376284159 2091 dbSNP
rs923677719 2092 dbSNP
rs935134688 2094 dbSNP
rs1229567531 2100 dbSNP
rs1313302372 2102 dbSNP
rs191606941 2107 dbSNP
rs1003350761 2108 dbSNP
rs1056123849 2120 dbSNP
rs1245183904 2121 dbSNP
rs1204555938 2126 dbSNP
rs1460872421 2126 dbSNP
rs1261369701 2127 dbSNP
rs1225883527 2139 dbSNP
rs1035891158 2140 dbSNP
rs1276590596 2143 dbSNP
rs551520797 2148 dbSNP
rs1483264797 2153 dbSNP
rs1213172841 2162 dbSNP
rs917560143 2162 dbSNP
rs375326913 2163 dbSNP
rs548069346 2166 dbSNP
rs1334098571 2167 dbSNP
rs1027243748 2173 dbSNP
rs150193137 2174 dbSNP
rs373367113 2175 dbSNP
rs985160083 2176 dbSNP
rs752789024 2177 dbSNP
rs781434902 2179 dbSNP
rs566109655 2180 dbSNP
rs549631900 2181 dbSNP
rs1481038194 2189 dbSNP
rs887175063 2191 dbSNP
rs1008298210 2198 dbSNP
rs1203044477 2200 dbSNP
rs976897031 2208 dbSNP
rs867309922 2210 dbSNP
rs576427998 2211 dbSNP
rs963987058 2213 dbSNP
rs1171038861 2214 dbSNP
rs923688488 2215 dbSNP
rs1312552725 2216 dbSNP
rs1392616401 2219 dbSNP
rs758549640 2220 dbSNP
rs537027805 2221 dbSNP
rs1367150029 2222 dbSNP
rs1357104917 2227 dbSNP
rs1449549102 2228 dbSNP
rs969030947 2229 dbSNP
rs1006386378 2230 dbSNP
rs1419681967 2235 dbSNP
rs555930754 2241 dbSNP
rs924827471 2242 dbSNP
rs764367995 2244 dbSNP
rs750219985 2245 dbSNP
rs938667201 2254 dbSNP
rs1263259208 2255 dbSNP
rs1240747568 2259 dbSNP
rs917676632 2260 dbSNP
rs947669222 2267 dbSNP
rs994346642 2273 dbSNP
rs1314215278 2274 dbSNP
rs1044788793 2275 dbSNP
rs376053228 2279 dbSNP
rs114200578 2285 dbSNP
rs1241667226 2287 dbSNP
rs1404093470 2292 dbSNP
rs1363499732 2293 dbSNP
rs1463610561 2294 dbSNP
rs541506267 2296 dbSNP
rs888741669 2298 dbSNP
rs931271397 2302 dbSNP
rs1249222847 2303 dbSNP
rs1454083588 2304 dbSNP
rs1375737633 2312 dbSNP
rs779929617 2313 dbSNP
rs1199348745 2317 dbSNP
rs879162554 2318 dbSNP
rs1489941892 2324 dbSNP
rs559590203 2325 dbSNP
rs1415882419 2330 dbSNP
rs1206473074 2331 dbSNP
rs749130482 2333 dbSNP
rs1176336152 2341 dbSNP
rs1007131179 2345 dbSNP
rs1226035550 2347 dbSNP
rs1325138285 2347 dbSNP
rs1283782158 2350 dbSNP
rs1329091252 2352 dbSNP
rs773548637 2352 dbSNP
rs1455211722 2353 dbSNP
rs1320019623 2355 dbSNP
rs1017970549 2359 dbSNP
rs1384526110 2362 dbSNP
rs1047324913 2364 dbSNP
rs997819932 2367 dbSNP
rs886915647 2378 dbSNP
rs1031174985 2382 dbSNP
rs956446696 2383 dbSNP
rs1322418962 2390 dbSNP
rs1375332783 2393 dbSNP
rs543804662 2399 dbSNP
rs1428362199 2401 dbSNP
rs1260593576 2404 dbSNP
rs989312424 2405 dbSNP
rs1041067455 2407 dbSNP
rs563592832 2408 dbSNP
rs1263246607 2412 dbSNP
rs1202542855 2413 dbSNP
rs771470628 2414 dbSNP
rs899934436 2417 dbSNP
rs1227876220 2422 dbSNP
rs996794401 2422 dbSNP
rs754977474 2423 dbSNP
rs534982826 2426 dbSNP
rs1295595973 2432 dbSNP
rs1454807552 2433 dbSNP
rs1439864996 2435 dbSNP
rs1336132444 2436 dbSNP
rs981109190 2440 dbSNP
rs1399252767 2441 dbSNP
rs1169056160 2445 dbSNP
rs1021666387 2447 dbSNP
rs927879678 2448 dbSNP
rs138724586 2457 dbSNP
rs563415421 2458 dbSNP
rs1032358655 2461 dbSNP
rs530564976 2462 dbSNP
rs1440259647 2468 dbSNP
rs960156803 2469 dbSNP
rs548587861 2470 dbSNP
rs1024722664 2481 dbSNP
rs1247959862 2482 dbSNP
rs1210714406 2485 dbSNP
rs1314706496 2486 dbSNP
rs930043974 2491 dbSNP
rs16340 2492 dbSNP
rs397831750 2492 dbSNP
rs1330062433 2494 dbSNP
rs969168695 2496 dbSNP
rs1007036329 2497 dbSNP
rs560519583 2502 dbSNP
rs1425763325 2516 dbSNP
rs1385459713 2520 dbSNP
rs980828405 2523 dbSNP
rs1162556501 2536 dbSNP
rs919633744 2541 dbSNP
rs547038533 2545 dbSNP
rs1040361311 2550 dbSNP
rs1191368297 2551 dbSNP
rs1437136689 2563 dbSNP
rs1249575468 2565 dbSNP
rs1224434025 2570 dbSNP
rs1487793861 2571 dbSNP
rs1291236243 2575 dbSNP
rs1226826936 2584 dbSNP
rs528177011 2585 dbSNP
rs982694820 2588 dbSNP
rs1280188665 2590 dbSNP
rs778496831 2592 dbSNP
rs546249318 2594 dbSNP
rs1040890204 2598 dbSNP
rs1441619336 2598 dbSNP
rs1471309499 2601 dbSNP
rs1305552626 2602 dbSNP
rs747723557 2603 dbSNP
rs1160808876 2605 dbSNP
rs998291843 2607 dbSNP
rs1322426598 2608 dbSNP
rs879745143 2611 dbSNP
rs565975247 2614 dbSNP
rs1158604687 2617 dbSNP
rs1321515114 2618 dbSNP
rs1351353054 2625 dbSNP
rs1436968270 2633 dbSNP
rs771832992 2640 dbSNP
rs1043437185 2642 dbSNP
rs1279155573 2646 dbSNP
rs1490432751 2653 dbSNP
rs904499587 2656 dbSNP
rs1803490 2659 dbSNP
rs1348916344 2661 dbSNP
rs1230282983 2662 dbSNP
rs999265016 2663 dbSNP
rs1021971307 2667 dbSNP
rs1327182098 2673 dbSNP
rs1289135033 2680 dbSNP
rs1031890487 2683 dbSNP
rs969211884 2685 dbSNP
rs539640103 2686 dbSNP
rs753012156 2687 dbSNP
rs1318626740 2689 dbSNP
rs1014430860 2699 dbSNP
rs1292672990 2701 dbSNP
rs1385809890 2701 dbSNP
rs1452513690 2705 dbSNP
rs552077876 2711 dbSNP
rs969116449 2712 dbSNP
rs1189244810 2718 dbSNP
rs960649920 2719 dbSNP
rs980520234 2721 dbSNP
rs1204319373 2725 dbSNP
rs1250589922 2727 dbSNP
rs570236737 2734 dbSNP
rs1183710532 2735 dbSNP
rs1204447023 2737 dbSNP
rs993278182 2744 dbSNP
rs1216674435 2749 dbSNP
rs370458878 2749 dbSNP
rs952371415 2757 dbSNP
rs982862231 2758 dbSNP
rs908457065 2778 dbSNP
rs943996188 2780 dbSNP
rs1362336564 2782 dbSNP
rs537715092 2783 dbSNP
rs921124625 2793 dbSNP
rs1469929539 2795 dbSNP
rs764039424 2798 dbSNP
rs1173888264 2800 dbSNP
rs1016481861 2804 dbSNP
rs984220833 2804 dbSNP
rs1480459596 2807 dbSNP
rs942868104 2809 dbSNP
rs1161349250 2813 dbSNP
rs1415925031 2815 dbSNP
rs374501135 2820 dbSNP
rs756937582 2822 dbSNP
rs1039863789 2823 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggguggucgacgagggACCGGGu 5'
                          |||||| 
Target 5' ----------------UGGCCCu 3'
1 - 7
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000354449.3 | 3UTR | UGGCCCUGGUGGAGCGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

Error report submission