pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol ATP5S   
Synonyms ATPW, FB, HSU79253
Description ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B)
Transcript NM_001003805   
Other Transcripts NM_001003803 , NM_015684   
Expression
Putative miRNA Targets on ATP5S
3'UTR of ATP5S
(miRNA target sites are highlighted)
>ATP5S|NM_001003805|3'UTR
   1 GTGATCTTCCTGGAGTAAGAGAAAAAGAAAATCTTGTCCAAGCCTTTAAGACAGCACTGCCTTCTCTGGAACTAAAATTA
  81 CAATTGAAGTAAAATAATGTGTCTTATTTCAGTATAAAGGATCATTTGAAACTGTTGATTCCAAACATCAACTAATATTA
 161 TATAGTCATCAGTAGAATTATAAGGATGCCATATCATGACATTTTAGAAGTGGAGAGTGCATCATATGTAGAAAATAAAT
 241 ATTCAGACGTGGCTCATTAATGTTACTAAGTTGGAAGTGAGAATTTATGAACATTAATTCATTTTAAGAAAAGTGCAGCC
 321 AGGCGCAGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCCAAAGCGGGCAGATCACCTGAGGTCAGGAGTTCAAGA
 401 CCAACCATGGCCAACATGGTGAAACCCCATCTCTACTAAAAAAACAAAATTAGCTGAATGTGGTGGTGCACGCCTTTAAT
 481 CCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCACTTGACTTGGGAGGTGGAGGTTGCAGGGACCCGAGATTGTGCCACT
 561 GCACTCCAGCCTGGGTGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auUUCAUUGAAGGUGAACCga 5'
            :| | ||||  ||||||  
Target 5' gaGAATCACTT-GACTTGGga 3'
507 - 526 134.00 -7.80
2
miRNA  3' auUUCAUUGA-AGG--UGAACCGa 5'
            || ||| | |:|  || |||| 
Target 5' gaAAATAAATATTCAGACGTGGCt 3'
231 - 254 125.00 -7.80
3
miRNA  3' auuuCAUU--GAAGGUGAACCga 5'
              ||||  ||  ||||| |  
Target 5' gcctGTAATCCTAGCACTTTGgg 3'
337 - 359 107.00 -6.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM4333132 4 COSMIC
COSM7615458 8 COSMIC
COSM956038 28 COSMIC
COSM7083475 32 COSMIC
COSM8917742 34 COSMIC
COSM6607982 60 COSMIC
COSM8771824 67 COSMIC
COSM3720921 78 COSMIC
COSM6309227 87 COSMIC
COSM80898 87 COSMIC
COSM5456436 91 COSMIC
COSN30167101 106 COSMIC
COSN30485867 190 COSMIC
COSN31486741 245 COSMIC
COSN22464974 482 COSMIC
COSN21793842 514 COSMIC
COSN16496024 629 COSMIC
COSN29576720 654 COSMIC
COSN23455468 1003 COSMIC
COSN8660129 1498 COSMIC
COSN16087008 1649 COSMIC
COSN17253021 1698 COSMIC
COSN23106493 1865 COSMIC
COSN16032048 2002 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765080242 9 dbSNP
rs12839 12 dbSNP
rs368725017 16 dbSNP
rs777399185 19 dbSNP
rs748784549 28 dbSNP
rs112164857 34 dbSNP
rs922227062 37 dbSNP
rs774381451 39 dbSNP
rs745672927 40 dbSNP
rs140298574 47 dbSNP
rs771834416 51 dbSNP
rs1326671913 56 dbSNP
rs1261654896 57 dbSNP
rs775147044 62 dbSNP
rs1304591695 69 dbSNP
rs1380611453 82 dbSNP
rs369428246 84 dbSNP
rs1214481427 85 dbSNP
rs765359072 89 dbSNP
rs1326852613 90 dbSNP
rs1315032910 101 dbSNP
rs144057879 102 dbSNP
rs1313092777 107 dbSNP
rs1256028301 108 dbSNP
rs1450318167 113 dbSNP
rs1317232833 114 dbSNP
rs1019197167 116 dbSNP
rs766889535 121 dbSNP
rs752003281 124 dbSNP
rs1487292801 125 dbSNP
rs935955003 126 dbSNP
rs755299956 138 dbSNP
rs772523439 145 dbSNP
rs576036774 189 dbSNP
rs1359272235 191 dbSNP
rs187362588 199 dbSNP
rs1277177408 200 dbSNP
rs921588259 203 dbSNP
rs945428555 211 dbSNP
rs1343228119 214 dbSNP
rs1165070640 216 dbSNP
rs1444934239 218 dbSNP
rs1384040142 221 dbSNP
rs1042453710 225 dbSNP
rs535529629 227 dbSNP
rs906509480 229 dbSNP
rs1262992725 232 dbSNP
rs192264398 241 dbSNP
rs951887630 245 dbSNP
rs984520487 248 dbSNP
rs907607691 249 dbSNP
rs180857509 250 dbSNP
rs1238232574 256 dbSNP
rs77879028 262 dbSNP
rs547189951 268 dbSNP
rs895385155 291 dbSNP
rs776172576 293 dbSNP
rs1327105483 294 dbSNP
rs1017082357 296 dbSNP
rs1381635654 303 dbSNP
rs747630629 304 dbSNP
rs993896090 316 dbSNP
rs1424872627 317 dbSNP
rs1029841825 325 dbSNP
rs937211456 332 dbSNP
rs1463014951 334 dbSNP
rs1373167591 337 dbSNP
rs1193088553 338 dbSNP
rs1055553392 347 dbSNP
rs555619326 348 dbSNP
rs1271458491 354 dbSNP
rs985510554 362 dbSNP
rs1409104428 368 dbSNP
rs45586135 370 dbSNP
rs533095655 371 dbSNP
rs1034726364 374 dbSNP
rs185911677 378 dbSNP
rs140274537 386 dbSNP
rs1250896099 392 dbSNP
rs945901146 393 dbSNP
rs766201581 397 dbSNP
rs999673770 407 dbSNP
rs1316038736 408 dbSNP
rs1436439341 410 dbSNP
rs1019060223 412 dbSNP
rs978117810 415 dbSNP
rs1344640835 417 dbSNP
rs531630080 422 dbSNP
rs142078287 428 dbSNP
rs1392833969 434 dbSNP
rs996343175 435 dbSNP
rs1166851747 437 dbSNP
rs1396591607 437 dbSNP
rs1460898774 438 dbSNP
rs1029081777 439 dbSNP
rs1177829762 440 dbSNP
rs1279619837 444 dbSNP
rs1314151857 446 dbSNP
rs1480280140 449 dbSNP
rs951777919 460 dbSNP
rs939491489 462 dbSNP
rs1184241835 467 dbSNP
rs374028181 472 dbSNP
rs1262557155 473 dbSNP
rs1462735502 474 dbSNP
rs1264852948 478 dbSNP
rs895156727 484 dbSNP
rs774248237 488 dbSNP
rs1190456815 500 dbSNP
rs907640073 504 dbSNP
rs1322546906 509 dbSNP
rs961777026 518 dbSNP
rs759568650 529 dbSNP
rs1336038194 530 dbSNP
rs1327797642 547 dbSNP
rs1443889488 548 dbSNP
rs1407667758 559 dbSNP
rs375065534 560 dbSNP
rs1191490987 561 dbSNP
rs1426897154 564 dbSNP
rs928428851 567 dbSNP
rs868280707 570 dbSNP
rs897300354 571 dbSNP
rs1363397704 572 dbSNP
rs151168913 576 dbSNP
rs113015063 585 dbSNP
rs1204217432 586 dbSNP
rs1458325900 587 dbSNP
rs1460846213 588 dbSNP
rs1276217690 590 dbSNP
rs1206627947 594 dbSNP
rs749207326 595 dbSNP
rs776038172 595 dbSNP
rs1278524930 596 dbSNP
rs1320888337 596 dbSNP
rs1357883495 596 dbSNP
rs1452515681 596 dbSNP
rs1491186902 596 dbSNP
rs398025027 596 dbSNP
rs71118869 596 dbSNP
rs1325139987 600 dbSNP
rs1157034807 605 dbSNP
rs937244129 605 dbSNP
rs1446744950 606 dbSNP
rs1055682475 607 dbSNP
rs1183118690 609 dbSNP
rs540166229 609 dbSNP
rs1235629403 610 dbSNP
rs1370055153 610 dbSNP
rs1221887505 612 dbSNP
rs946778610 612 dbSNP
rs1282827933 613 dbSNP
rs1283376398 615 dbSNP
rs890866233 620 dbSNP
rs1361211185 624 dbSNP
rs1006672268 625 dbSNP
rs1244550059 633 dbSNP
rs1376348420 647 dbSNP
rs1272373778 648 dbSNP
rs868384611 653 dbSNP
rs1432181924 668 dbSNP
rs1326206443 669 dbSNP
rs375971812 671 dbSNP
rs1426761731 672 dbSNP
rs1366375237 675 dbSNP
rs116425757 677 dbSNP
rs990001495 678 dbSNP
rs1421759714 681 dbSNP
rs575960805 684 dbSNP
rs1446339548 689 dbSNP
rs1241279211 690 dbSNP
rs1222113873 691 dbSNP
rs1490788357 691 dbSNP
rs374964333 691 dbSNP
rs190157058 692 dbSNP
rs999539524 694 dbSNP
rs1221295614 703 dbSNP
rs1319388791 721 dbSNP
rs1248207509 726 dbSNP
rs1215637187 741 dbSNP
rs1339365084 743 dbSNP
rs1276880825 749 dbSNP
rs1020170437 752 dbSNP
rs1040540375 762 dbSNP
rs981679991 765 dbSNP
rs149907445 769 dbSNP
rs1356321464 775 dbSNP
rs1171279794 776 dbSNP
rs996738145 812 dbSNP
rs1409472053 814 dbSNP
rs939397964 825 dbSNP
rs1473297135 827 dbSNP
rs1481262137 828 dbSNP
rs1156291527 829 dbSNP
rs990925167 834 dbSNP
rs1190266274 840 dbSNP
rs377567904 841 dbSNP
rs1029284314 845 dbSNP
rs762552673 849 dbSNP
rs952376492 851 dbSNP
rs916546588 860 dbSNP
rs1005913800 863 dbSNP
rs1014569812 864 dbSNP
rs1324679168 866 dbSNP
rs941357376 870 dbSNP
rs571854789 872 dbSNP
rs540815766 878 dbSNP
rs117513134 886 dbSNP
rs1324702345 889 dbSNP
rs1283086532 891 dbSNP
rs533034731 895 dbSNP
rs958562038 896 dbSNP
rs930248502 901 dbSNP
rs370472521 907 dbSNP
rs1441481550 916 dbSNP
rs1398217707 927 dbSNP
rs1230367757 929 dbSNP
rs914520579 931 dbSNP
rs113426815 947 dbSNP
rs767539716 950 dbSNP
rs1406505940 952 dbSNP
rs78401946 966 dbSNP
rs923922559 980 dbSNP
rs935423541 982 dbSNP
rs1177432632 985 dbSNP
rs1011183128 990 dbSNP
rs1235892838 993 dbSNP
rs1040468111 1014 dbSNP
rs1489800882 1019 dbSNP
rs901931561 1026 dbSNP
rs1221390593 1027 dbSNP
rs1019948226 1028 dbSNP
rs967259457 1031 dbSNP
rs10133342 1036 dbSNP
rs531685296 1050 dbSNP
rs1362688224 1053 dbSNP
rs1035893462 1055 dbSNP
rs958585568 1058 dbSNP
rs991284507 1059 dbSNP
rs916656890 1064 dbSNP
rs1302225018 1068 dbSNP
rs962813004 1070 dbSNP
rs764277812 1074 dbSNP
rs1423144277 1075 dbSNP
rs1302906800 1076 dbSNP
rs113730157 1084 dbSNP
rs1444745117 1085 dbSNP
rs1255987026 1089 dbSNP
rs548340695 1094 dbSNP
rs1045886 1099 dbSNP
rs1487046309 1113 dbSNP
rs754102433 1133 dbSNP
rs568533881 1137 dbSNP
rs111453906 1138 dbSNP
rs897461690 1139 dbSNP
rs146476824 1140 dbSNP
rs1382133686 1141 dbSNP
rs111446193 1142 dbSNP
rs1128692 1143 dbSNP
rs958682282 1146 dbSNP
rs1015516833 1147 dbSNP
rs1363814850 1149 dbSNP
rs1245061829 1165 dbSNP
rs1275048918 1174 dbSNP
rs1399187606 1182 dbSNP
rs1358187332 1184 dbSNP
rs991368460 1199 dbSNP
rs1343921475 1200 dbSNP
rs571030844 1205 dbSNP
rs1165086705 1219 dbSNP
rs1342361792 1226 dbSNP
rs112034799 1231 dbSNP
rs1163288988 1235 dbSNP
rs1430849400 1237 dbSNP
rs968684652 1242 dbSNP
rs1041332092 1245 dbSNP
rs1487531763 1245 dbSNP
rs540056987 1256 dbSNP
rs1003182439 1257 dbSNP
rs1355718009 1259 dbSNP
rs1035626910 1263 dbSNP
rs958904500 1264 dbSNP
rs1012736151 1272 dbSNP
rs1309241484 1278 dbSNP
rs1442499898 1278 dbSNP
rs1188951694 1283 dbSNP
rs112774313 1288 dbSNP
rs924520852 1292 dbSNP
rs935371315 1300 dbSNP
rs112928084 1302 dbSNP
rs1463805594 1305 dbSNP
rs556778791 1310 dbSNP
rs1389346742 1322 dbSNP
rs918550915 1334 dbSNP
rs1463091530 1341 dbSNP
rs1374100339 1344 dbSNP
rs1202545954 1357 dbSNP
rs1166378223 1368 dbSNP
rs1170599342 1371 dbSNP
rs923385045 1374 dbSNP
rs570254769 1376 dbSNP
rs757351447 1387 dbSNP
rs1477013308 1391 dbSNP
rs932029352 1392 dbSNP
rs1431981628 1393 dbSNP
rs1050633508 1397 dbSNP
rs951431635 1399 dbSNP
rs887903807 1403 dbSNP
rs1265336486 1404 dbSNP
rs1197587020 1405 dbSNP
rs1415173777 1407 dbSNP
rs987429763 1413 dbSNP
rs1258562964 1421 dbSNP
rs1217994279 1422 dbSNP
rs1315831772 1433 dbSNP
rs942305227 1434 dbSNP
rs376139589 1444 dbSNP
rs1330098390 1450 dbSNP
rs182427567 1455 dbSNP
rs1002577828 1456 dbSNP
rs1035345911 1461 dbSNP
rs7147718 1466 dbSNP
rs1224882151 1468 dbSNP
rs139269206 1473 dbSNP
rs1013040610 1477 dbSNP
rs1021475314 1479 dbSNP
rs1376065402 1482 dbSNP
rs1184262992 1487 dbSNP
rs1419730626 1489 dbSNP
rs559076357 1500 dbSNP
rs1041467649 1501 dbSNP
rs1345266074 1506 dbSNP
rs190630091 1515 dbSNP
rs183619492 1517 dbSNP
rs544753631 1518 dbSNP
rs938349177 1523 dbSNP
rs1057227404 1543 dbSNP
rs1344039760 1554 dbSNP
rs1272660207 1555 dbSNP
rs1240817291 1557 dbSNP
rs894392468 1558 dbSNP
rs1460407016 1561 dbSNP
rs998629236 1566 dbSNP
rs1031591509 1569 dbSNP
rs577383734 1570 dbSNP
rs965258981 1573 dbSNP
rs976063492 1574 dbSNP
rs1400586712 1578 dbSNP
rs780536449 1579 dbSNP
rs953507223 1580 dbSNP
rs1379741991 1584 dbSNP
rs986592054 1588 dbSNP
rs1176802859 1591 dbSNP
rs1446552750 1602 dbSNP
rs909285868 1610 dbSNP
rs564929194 1621 dbSNP
rs995565469 1622 dbSNP
rs543261777 1630 dbSNP
rs1441620272 1631 dbSNP
rs1206498631 1637 dbSNP
rs1276328166 1637 dbSNP
rs942215581 1638 dbSNP
rs541892416 1644 dbSNP
rs527304439 1656 dbSNP
rs561658214 1664 dbSNP
rs1025746323 1675 dbSNP
rs1297245421 1688 dbSNP
rs1469321269 1690 dbSNP
rs1321145039 1697 dbSNP
rs1339042643 1699 dbSNP
rs112635475 1700 dbSNP
rs764149606 1703 dbSNP
rs772342450 1703 dbSNP
rs11295551 1704 dbSNP
rs1235502360 1704 dbSNP
rs1491098235 1704 dbSNP
rs398025028 1704 dbSNP
rs572873116 1704 dbSNP
rs75453465 1704 dbSNP
rs74332015 1706 dbSNP
rs1195007838 1717 dbSNP
rs938879605 1720 dbSNP
rs1056818197 1723 dbSNP
rs1331365041 1729 dbSNP
rs894106936 1734 dbSNP
rs1012679398 1738 dbSNP
rs1043224449 1744 dbSNP
rs1224939098 1747 dbSNP
rs1280914743 1754 dbSNP
rs1360966383 1763 dbSNP
rs904271608 1764 dbSNP
rs1290014146 1765 dbSNP
rs1228228715 1769 dbSNP
rs1354800819 1771 dbSNP
rs144862473 1778 dbSNP
rs1219557622 1784 dbSNP
rs1340312624 1788 dbSNP
rs374510361 1793 dbSNP
rs372205602 1796 dbSNP
rs188961144 1802 dbSNP
rs914719946 1806 dbSNP
rs1411488555 1807 dbSNP
rs1172743043 1809 dbSNP
rs1478016699 1812 dbSNP
rs1422736563 1814 dbSNP
rs1191016379 1816 dbSNP
rs1490752154 1822 dbSNP
rs1246946185 1827 dbSNP
rs1220135069 1828 dbSNP
rs1491533985 1828 dbSNP
rs1168209288 1829 dbSNP
rs1225560948 1829 dbSNP
rs1274521568 1829 dbSNP
rs1275653392 1829 dbSNP
rs1333275551 1829 dbSNP
rs1356408390 1829 dbSNP
rs1399243002 1829 dbSNP
rs1434316386 1829 dbSNP
rs1434717973 1829 dbSNP
rs1466111086 1829 dbSNP
rs1491189908 1829 dbSNP
rs555068519 1829 dbSNP
rs750138701 1829 dbSNP
rs758016227 1829 dbSNP
rs761957738 1829 dbSNP
rs773565273 1829 dbSNP
rs1190286368 1830 dbSNP
rs1476748774 1831 dbSNP
rs1203796679 1835 dbSNP
rs1261443444 1837 dbSNP
rs1434076692 1839 dbSNP
rs1201903815 1840 dbSNP
rs1427376821 1841 dbSNP
rs1239535015 1846 dbSNP
rs1179781450 1850 dbSNP
rs1457749841 1851 dbSNP
rs1480157612 1852 dbSNP
rs1205930092 1853 dbSNP
rs1313161269 1853 dbSNP
rs1159980248 1854 dbSNP
rs1365527477 1860 dbSNP
rs111657658 1861 dbSNP
rs1288120716 1862 dbSNP
rs1391214908 1867 dbSNP
rs1376008404 1870 dbSNP
rs1406499168 1872 dbSNP
rs1329232444 1879 dbSNP
rs1467336343 1884 dbSNP
rs548413212 1889 dbSNP
rs1174910792 1895 dbSNP
rs1412445239 1897 dbSNP
rs1381605027 1900 dbSNP
rs547880729 1916 dbSNP
rs370797512 1920 dbSNP
rs1228543097 1922 dbSNP
rs986130881 1929 dbSNP
rs1236818459 1931 dbSNP
rs909327541 1949 dbSNP
rs924368414 1950 dbSNP
rs1237303528 1954 dbSNP
rs938471446 1955 dbSNP
rs1260611322 1958 dbSNP
rs1056789840 1962 dbSNP
rs963448267 1965 dbSNP
rs948578095 1966 dbSNP
rs146766928 1969 dbSNP
rs1239430986 1975 dbSNP
rs1351615008 1977 dbSNP
rs533519564 1979 dbSNP
rs972232373 1980 dbSNP
rs1037638148 1983 dbSNP
rs1302098060 1984 dbSNP
rs550151473 1985 dbSNP
rs898968724 1987 dbSNP
rs1225108207 1991 dbSNP
rs149136376 1992 dbSNP
rs1490245503 1993 dbSNP
rs1418502976 1995 dbSNP
rs938931891 1997 dbSNP
rs1378013444 2005 dbSNP
rs1183030894 2006 dbSNP
rs1026175725 2007 dbSNP
rs887196560 2023 dbSNP
rs1008736823 2024 dbSNP
rs1057496981 2026 dbSNP
rs1180438317 2032 dbSNP
rs1489477057 2033 dbSNP
rs1264098671 2035 dbSNP
rs1216236793 2046 dbSNP
rs1487347097 2051 dbSNP
rs1417345841 2062 dbSNP
rs1158330741 2066 dbSNP
rs1267346470 2067 dbSNP
rs1019572564 2072 dbSNP
rs1322205655 2074 dbSNP
rs921287373 2076 dbSNP
rs964411244 2079 dbSNP
rs916150066 2080 dbSNP
rs948432133 2085 dbSNP
rs1042723858 2089 dbSNP
rs1358044328 2103 dbSNP
rs1294721975 2110 dbSNP
rs1457995401 2112 dbSNP
rs116849769 2113 dbSNP
rs769361970 2115 dbSNP
rs1478999566 2118 dbSNP
rs1424873103 2120 dbSNP
rs548940735 2127 dbSNP
rs565307234 2131 dbSNP
rs959780789 2134 dbSNP
rs1269767209 2157 dbSNP
rs900985995 2171 dbSNP
rs1488201944 2179 dbSNP
rs915554707 2182 dbSNP
rs193207924 2193 dbSNP
rs1319735511 2195 dbSNP
rs1337905642 2204 dbSNP
rs60103816 2204 dbSNP
rs894481777 2204 dbSNP
rs920491986 2213 dbSNP
rs1306928664 2217 dbSNP
rs929247002 2218 dbSNP
rs111985271 2219 dbSNP
rs890288823 2227 dbSNP
rs1389458573 2230 dbSNP
rs1292285257 2233 dbSNP
rs1248707539 2234 dbSNP
rs1008289575 2235 dbSNP
rs1401455562 2239 dbSNP
rs757380688 2245 dbSNP
rs749001770 2246 dbSNP
rs1379524189 2247 dbSNP
rs1359053914 2248 dbSNP
rs112533600 2249 dbSNP
rs770442036 2253 dbSNP
rs1265445625 2256 dbSNP
rs866918211 2257 dbSNP
rs1234777342 2258 dbSNP
rs1479700253 2262 dbSNP
rs1458994890 2268 dbSNP
rs899945479 2270 dbSNP
rs1197703945 2272 dbSNP
rs1176679518 2274 dbSNP
rs1257381629 2286 dbSNP
rs1233603730 2296 dbSNP
rs1243747859 2309 dbSNP
rs1016230666 2310 dbSNP
rs1181578742 2312 dbSNP
rs550272080 2321 dbSNP
rs963457635 2321 dbSNP
rs750496634 2323 dbSNP
rs972117712 2324 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BAC-D2
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1133252. RNA binding protein: AGO2. Condition:Untreated ...

- Majoros WH; Lekprasert P; Mukherjee N; et al., 2013, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' auuucauugaaggugAACCGa 5'
                         ||||| 
Target 5' ---------------UUGGCu 3'
1 - 6
Article - Majoros WH; Lekprasert P; Mukherjee N; et al.
- Nature methods, 2013
High-throughput sequencing has opened numerous possibilities for the identification of regulatory RNA-binding events. Cross-linking and immunoprecipitation of Argonaute proteins can pinpoint a microRNA (miRNA) target site within tens of bases but leaves the identity of the miRNA unresolved. A flexible computational framework, microMUMMIE, integrates sequence with cross-linking features and reliably identifies the miRNA family involved in each binding event. It considerably outperforms sequence-only approaches and quantifies the prevalence of noncanonical binding modes.
LinkOut: [PMID: 23708386]
CLIP-seq Support 1 for dataset GSM1133252
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BAC-D2 / Untreated
Location of target site ENST00000245448.6 | 3UTR | UUGGCUGAAUACAAAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23708386 / GSE46611
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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