pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol CDK1   
Synonyms CDC2, CDC28A, P34CDC2
Description cyclin dependent kinase 1
Transcript NM_001170406   
Other Transcripts NM_001170407 , NM_001786 , NM_033379   
Expression
Putative miRNA Targets on CDK1
3'UTR of CDK1
(miRNA target sites are highlighted)
>CDK1|NM_001170406|3'UTR
   1 CTAATTTTATTAATATTTATGCACTGTGGATATAAAGGGACTATATATAGAAGTCCCTGCATTTTGTGGGAATATGCTTG
  81 GAAAAAGTGTTAGAATAAGAAAAAGTATTTCATTTTTCTCCCTCATGGTTAGTTTATACAGGTTAGAGATACCCATGTTA
 161 TTACCAGATAGTGTTTCTAGTAAGTAAAAATTAGTGCCTGAGATAACATAGAACTGGTAGGTATTGTTGGAAGCTAGGGT
 241 AGTCTGGTCTTTCTTTGGCTGTCAGATACATGTAAAACAAAGTAATGAAAGCCTAGGGCAGAGTGGTGGTTGTAGGTGTT
 321 TTATTCCAGTTTTGAACATGTTTTGGTCAATTTATTGTAGACATTTATTATATTTCAGGTAAATTATAAAATTGTATAGT
 401 TTTAAGTACTGAAGTATATAAAAGTGTCTTATTCTTGCACCAGTTCTACCAAACCACTCTGCAGAGGTAGCGCTGTTAGT
 481 TTTATTTGTAATCTTACACTTGTATGTATGTTCACTTTGTATGTATATAAAGATTTTTTTTTTTACACAAGGTGGACTTA
 561 TTTGCATATGTATATATACATATTTTCCCTTTTTTGTGTAAAACATTATCAAGACGTAGATCTACCTATGTCTATTTACA
 641 TTTTTGATATAATTAAACCACTTCCATATTGATGAACATTTAAATTATTTTCCAACTTGGTTATTGTTGCTCTTATTAAC
 721 AGTACTGCACTGAATGTCCTTATAGATATTTATCTTCGTATGCAACTTTATAGGATAAATTTTTAGAATGGGAATGATGG
 801 ATTGAAGATGTTTATTTACATTTTGATAGATATTGCCGGTTGCCCCCTAAAAAACTTGTAGCAATTTACTCTTAAATACT
 881 CATGGTGTGTAATACTTATTGTTTTAGTACATCATTGCCAAAACTTGGTTTTATCAATCTGTTAACTATGTGAAAAAGGC
 961 ATATTAAGATTGTTTTAATTTTATATTTCATGACAATTTAACACTTCATATTTAGCTATTATAAACCGCCTATATTTTCG
1041 TTAGGATACGTTCTTTAACAATCTTGCATGACTTTTGGACTTTCTGCTTTTATGTCTTGCTTAAGTCTTCCTCACTCAAA
1121 GATCGAATGTATTAGAATAATACATGTCAGTATTTTTCTGGTAGTTTTAGTAAGTCCTGTCTTCCACACATACTTTTTTT
1201 GTCTTAAATTCTGTATTAAGATTTATTTTGACTTAAAAACTGGGATACAGATTCTGCTTTATCTTTTTCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accACGUUUUCAU--UAAC-ACCAAAAa 5'
             ||||:|:|||  : || | ||||| 
Target 5' ctcTGCAGAGGTAGCGCTGTTAGTTTTa 3'
457 - 484 140.00 -12.00
2
miRNA  3' acCACGUUUUCAUUAACACCAAAAa 5'
            |||:: || || || | ||||| 
Target 5' tgGTGTGTAA-TACTTATTGTTTTa 3'
883 - 906 138.00 -6.37
3
miRNA  3' accaCGUUUUCAUUAACACCAAAAa 5'
              || |::|||: | |||| || 
Target 5' ggaaGCTAGGGTAG-TCTGGTCTTt 3'
229 - 252 132.00 -10.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26970111 49 COSMIC
COSN8934844 449 COSMIC
COSN25096282 468 COSMIC
COSN27487085 545 COSMIC
COSN21860891 838 COSMIC
COSN20783734 980 COSMIC
COSN5879994 1029 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767855246 3 dbSNP
rs753032757 13 dbSNP
rs760824235 16 dbSNP
rs867317733 21 dbSNP
rs142079607 24 dbSNP
rs750292377 27 dbSNP
rs758387455 30 dbSNP
rs779662361 31 dbSNP
rs1255593513 35 dbSNP
rs565964874 41 dbSNP
rs780820433 44 dbSNP
rs1424053468 46 dbSNP
rs1048820261 56 dbSNP
rs1319007900 61 dbSNP
rs1391254865 67 dbSNP
rs774156794 71 dbSNP
rs1436206109 75 dbSNP
rs1334124038 77 dbSNP
rs1023381864 92 dbSNP
rs1226785707 107 dbSNP
rs1367466987 108 dbSNP
rs1339160118 126 dbSNP
rs1386247486 127 dbSNP
rs1388926435 128 dbSNP
rs1246370022 132 dbSNP
rs1458227196 133 dbSNP
rs948924059 136 dbSNP
rs1166669085 150 dbSNP
rs750048290 158 dbSNP
rs1045871727 159 dbSNP
rs1451311173 164 dbSNP
rs907327895 165 dbSNP
rs1390678567 169 dbSNP
rs1197625849 177 dbSNP
rs1027537783 178 dbSNP
rs12415622 199 dbSNP
rs999518675 203 dbSNP
rs1209992876 206 dbSNP
rs1490624136 208 dbSNP
rs951974005 217 dbSNP
rs1292493761 219 dbSNP
rs2261327 221 dbSNP
rs893143489 222 dbSNP
rs1269841310 224 dbSNP
rs567245939 237 dbSNP
rs532901473 246 dbSNP
rs1303721852 254 dbSNP
rs3213049 265 dbSNP
rs916266071 268 dbSNP
rs3213050 270 dbSNP
rs1431397070 280 dbSNP
rs140037449 281 dbSNP
rs969055411 301 dbSNP
rs554524451 306 dbSNP
rs1378820646 309 dbSNP
rs1315632202 312 dbSNP
rs1199157982 318 dbSNP
rs1472087938 319 dbSNP
rs373026408 346 dbSNP
rs980102003 347 dbSNP
rs954105247 351 dbSNP
rs149852034 356 dbSNP
rs1484232094 364 dbSNP
rs1274335259 365 dbSNP
rs1200348361 374 dbSNP
rs1019196979 379 dbSNP
rs965872819 385 dbSNP
rs754105734 388 dbSNP
rs912715782 393 dbSNP
rs1350175231 395 dbSNP
rs558737915 396 dbSNP
rs576522753 397 dbSNP
rs530055759 399 dbSNP
rs1394165599 408 dbSNP
rs1026211396 415 dbSNP
rs1039779847 418 dbSNP
rs1456240664 419 dbSNP
rs1409380277 420 dbSNP
rs1414419841 421 dbSNP
rs951741195 422 dbSNP
rs1473777634 426 dbSNP
rs1233765590 450 dbSNP
rs1302574897 452 dbSNP
rs1187259272 455 dbSNP
rs1441236066 456 dbSNP
rs762165642 464 dbSNP
rs1204451801 472 dbSNP
rs765384412 473 dbSNP
rs899839190 475 dbSNP
rs1230422613 485 dbSNP
rs540774875 494 dbSNP
rs995481003 494 dbSNP
rs1445499416 496 dbSNP
rs1349313304 502 dbSNP
rs948472876 503 dbSNP
rs1342259875 505 dbSNP
rs750481292 508 dbSNP
rs1337294351 509 dbSNP
rs1433725607 518 dbSNP
rs779555217 526 dbSNP
rs1048872014 528 dbSNP
rs1407402247 529 dbSNP
rs12220787 533 dbSNP
rs1004744581 534 dbSNP
rs1412585278 534 dbSNP
rs934819641 536 dbSNP
rs1370718232 538 dbSNP
rs1184679813 539 dbSNP
rs1014734566 545 dbSNP
rs1232333209 549 dbSNP
rs1053805604 550 dbSNP
rs3213051 557 dbSNP
rs1013301765 567 dbSNP
rs947405717 573 dbSNP
rs1226451135 581 dbSNP
rs1358126970 584 dbSNP
rs1315647171 590 dbSNP
rs1227519349 596 dbSNP
rs866345472 598 dbSNP
rs1023352019 605 dbSNP
rs969464790 609 dbSNP
rs1250918856 610 dbSNP
rs1430823624 611 dbSNP
rs979161908 615 dbSNP
rs1321109392 616 dbSNP
rs147945484 617 dbSNP
rs1180025149 621 dbSNP
rs1403960952 625 dbSNP
rs541831147 629 dbSNP
rs1419885013 631 dbSNP
rs889751901 635 dbSNP
rs1164797255 639 dbSNP
rs956999072 642 dbSNP
rs1388821517 647 dbSNP
rs571329451 649 dbSNP
rs988367585 667 dbSNP
rs752021351 669 dbSNP
rs912746854 671 dbSNP
rs563387401 673 dbSNP
rs1219559934 684 dbSNP
rs1453141958 688 dbSNP
rs1292295770 700 dbSNP
rs1204142936 705 dbSNP
rs3213052 713 dbSNP
rs901692596 720 dbSNP
rs781478376 723 dbSNP
rs373908539 725 dbSNP
rs538769802 727 dbSNP
rs1376253029 744 dbSNP
rs1272751194 745 dbSNP
rs1438108543 747 dbSNP
rs2456774 758 dbSNP
rs1026682918 759 dbSNP
rs747916389 760 dbSNP
rs951962080 761 dbSNP
rs1304172509 769 dbSNP
rs1429506061 775 dbSNP
rs575955360 789 dbSNP
rs1022592198 801 dbSNP
rs1174842620 814 dbSNP
rs1370413749 821 dbSNP
rs969664988 827 dbSNP
rs1424495279 834 dbSNP
rs181575957 838 dbSNP
rs928383939 839 dbSNP
rs1373691776 840 dbSNP
rs1036209302 845 dbSNP
rs934854609 846 dbSNP
rs1298982955 849 dbSNP
rs1205085842 855 dbSNP
rs1311127898 857 dbSNP
rs896334087 858 dbSNP
rs1332626709 863 dbSNP
rs1220422253 866 dbSNP
rs988987604 877 dbSNP
rs1323898061 880 dbSNP
rs1013336025 882 dbSNP
rs1409609042 886 dbSNP
rs868842429 886 dbSNP
rs113978841 892 dbSNP
rs1339909391 900 dbSNP
rs1203181919 903 dbSNP
rs1001003693 907 dbSNP
rs1049972375 912 dbSNP
rs1481106004 915 dbSNP
rs1470991704 928 dbSNP
rs141764318 938 dbSNP
rs1032024340 949 dbSNP
rs1265473002 958 dbSNP
rs369360059 960 dbSNP
rs943997187 962 dbSNP
rs1471507890 970 dbSNP
rs1252348263 984 dbSNP
rs116168241 989 dbSNP
rs988397325 991 dbSNP
rs1194593475 993 dbSNP
rs897230153 996 dbSNP
rs1235657516 1004 dbSNP
rs1205076915 1016 dbSNP
rs548569487 1028 dbSNP
rs1026149333 1029 dbSNP
rs1226146722 1029 dbSNP
rs1327553631 1032 dbSNP
rs1309665391 1033 dbSNP
rs777430241 1035 dbSNP
rs1224683851 1037 dbSNP
rs1006105990 1040 dbSNP
rs1022811070 1041 dbSNP
rs1454653497 1044 dbSNP
rs1456922668 1045 dbSNP
rs1320173307 1047 dbSNP
rs1455893132 1049 dbSNP
rs185836343 1050 dbSNP
rs969717535 1051 dbSNP
rs1423010840 1063 dbSNP
rs1002532083 1068 dbSNP
rs1035883814 1069 dbSNP
rs570214205 1071 dbSNP
rs1441387827 1073 dbSNP
rs955815796 1076 dbSNP
rs773339118 1096 dbSNP
rs1246822252 1097 dbSNP
rs1206257333 1098 dbSNP
rs1486682288 1113 dbSNP
rs537390981 1114 dbSNP
rs190162062 1125 dbSNP
rs3213053 1126 dbSNP
rs748761016 1130 dbSNP
rs770932351 1132 dbSNP
rs1308178956 1135 dbSNP
rs1432982487 1136 dbSNP
rs914752206 1145 dbSNP
rs1289603599 1146 dbSNP
rs968845725 1147 dbSNP
rs1417230282 1151 dbSNP
rs1347862245 1158 dbSNP
rs1165417698 1162 dbSNP
rs1036241997 1171 dbSNP
rs1389443927 1176 dbSNP
rs972366074 1180 dbSNP
rs985728897 1183 dbSNP
rs911459474 1188 dbSNP
rs1429715568 1190 dbSNP
rs534903833 1193 dbSNP
rs944069457 1195 dbSNP
rs1041048243 1212 dbSNP
rs1044936474 1215 dbSNP
rs904999296 1226 dbSNP
rs1360880050 1244 dbSNP
rs1274532328 1250 dbSNP
rs1247762005 1254 dbSNP
rs1000633072 1257 dbSNP
rs1296596378 1267 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BACD3
Disease MIMAT0022730
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020025. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020025
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BACD3 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000395284.3 | 3UTR | GCCUAUAUCUGGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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