miRTarBase - #MIRT495678


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pre-miRNA Information
pre-miRNA hsa-mir-4772   
Genomic Coordinates chr2: 102432289 - 102432366
Description Homo sapiens miR-4772 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4772-3p
Sequence 48| CCUGCAACUUUGCCUGAUCAGA |69
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 6 2 + 102432341 29233923 MiREDiBase
A-to-I 7 2 + 102432342 23291724, 27587585, 29233923 MiREDiBase
A-to-I 20 2 + 102432355 29233923 MiREDiBase
A-to-I 22 2 + 102432357 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28593220 7 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1256302752 1 dbSNP
rs1235136670 6 dbSNP
rs1321744784 8 dbSNP
rs1009816485 11 dbSNP
rs1022342638 21 dbSNP
Putative Targets

Gene Information
Gene Symbol PRKD3   
Synonyms EPK2, PKC-NU, PKD3, PRKCN, nPKC-NU
Description protein kinase D3
Transcript NM_005813   
Expression
Putative miRNA Targets on PRKD3
3'UTR of PRKD3
(miRNA target sites are highlighted)		 
>PRKD3|NM_005813|3'UTR
   1 TCACTGAGCTAACCTAAATAAGGAAGGATTTCATTTTATGGACTGATATTTTGCTGTGTAACTTGTTCTTTGTAGATTGT
  81 CATCTGCAGTGCTGCAAAGATATGAAGAAATATGATAACGAATAAGTGACACCAGTACTGTAGTTCATAATGAGTAGGTA
 161 CAGGCGGGAAACTGAATAATAAGAAGTCATAATGGAATCAAGGTGAAGCTTTTTATAAACTTTTTTAGCCTAAGCAATAA
 241 CTGGTTTTGTATTTTTTCTTAATCCTTCACTTTAATACAATAGGCTCACTTAATTTGTCTTCCCATTTCTCTTTATATAT
 321 ATATATATAAATATAAATATATGTTTGTTTGTTTTTTTAATGAAAAACAAGTCAAGCTAGCATCCAGTTACTATATAGCT
 401 TGGCTAAATTATACAAGACTTACAAGATTGATTACTCGACAGGCTTGTATTTAAGAGGTAACTGTGAGGTTACCATTATG
 481 TGATGTTACTATAAGGACTTTTAACATTGGTTTAACAAACCATAGAGGCATTGAAGGGTTTTTCTTAGATGCCTAGAAAA
 561 AGCGCACTGGGCTGTTTTACCTTTCTTTTTTAGGTCAATCAAGACTCCAAAATAGTGATTCCTAACCTTTTTGGAGTTGC
 641 TCTGCTACTCTGAATATGTTCTATACAGCATAAGGATTGTCACCTTCTGTGTGTTGCAACAGCTTCTAAGATAATTAGGG
 721 ACAAATGATGTTACAAAAGGAAGAGTACTGCTGGTCTAAGTGCTGAGTTGTATGTCTTTGCATAGCTCCACTCTGCTGCT
 801 AAATATGCATGTTCTGACTGACACCATCTTGATGCCAGTACTGGATTCCAGCATTCAGCAGGTGCAGATCTCGGCTTTAC
 881 ACAATTTATCTTTACCTAGGGTTCAGTCAGTAATTTCTGCTTTTTAGCAGGGCCAGTGCAGGGTCAGTTAATGCTACAGT
 961 TACTGTATAGCAAACAGTATCCTTTTTTCTCCTTCCCCTAGCCTATTGGGCTTTGCAGATATCTGGAGTGTTTTAAAGTC
1041 AATTATTTTAAGCAGTTTGAGGGGATGTGTAGGAGTGGAGCATGAAACAGTTTATAAGGCTGGGGCTGTATTATCAGCAC
1121 AGCAAATTAAAGAATGAAAGAAGTACTTCTTTTTACATTTCAGCTCCAGCAGCCAGCTATTTAAAAAATATTTTTAAATA
1201 TCTTCCCCAAAGTTTAAGATGTGGGACCATCTACTTGTAAGAAACAGTGGCTTATTTCTTCATTTCTCAGTAATCATTGT
1281 AAACCTTTTTTTTTTTCTTCTCCACTCTAACAAAAGTAAAAGAACAAAACTTTTGCTGAGGTCTTGGACTCCACTACTTG
1361 TTAGTTATGTTGGCCTGGACAGATGGCAGGTCTGTCGGCAGTTCCTCAGTCTGTAAAATGAAGATTATCATTCTTGCCTC
1441 TCCCTTTGTCACAGTGTTGTCGTGAAGATCAGATATGTATGAATGCAGTCAAATAAACTAAAAACTAGGAAAGTGTTAAC
1521 TATCGTTGCCCACCGAATTTGAGGTAGCAAAAAAAAAAAAGAATGTTCTGGTACATGAACAGACTGAGAAGGCCTTTCGA
1601 CATCCCTGAAGCTAGTCTCCTGTCTAGACTAAAAATATCCTTGAAAGAATAGTAGCAAACAGTATGCAGTACTCCTGTGT
1681 TCTAAGTTCTTTTATGTTTTAGTTTACCCTCACAGCAGCCATAGTGTTAAGTCATTATGAGCTTCATCTTAAAGATAAGA
1761 AAACTGAGGCAAGGGGAGATTAACTTACTGCCAAATTTCAAACAGTTAGTAGTATTTGAGACCAGTAGTATGGCTCTAAT
1841 CTTACCCTTAGCCCTCCCAACCATTATGCTGTACTATCTACCCATAAATACCTCCAGGAAACATTCCCCTCTTGGTAATT
1921 TGTCCTTCTATAGAAGCTTCAAAGATTAAATCAAATTAATTTTCAAAAAAAATTTTTTTTTAGAAATGTTATTTTCCCTG
2001 TGATAGAGGATGACTTCCCAGTTTCACCAAAGTCTGTTTATATCAACACACACAAAATGGAATAATTCTGAGTCACTAGG
2081 CAATCAATCTACTGTGGTTTTACTATGTAAGGTGAAAATTAACTGGAACGATGTTTGTTTGCTATACTTACATAGTCAAA
2161 CTTTACAAGCCATGAAATTAATTGCACTCTTTGTATTTGTTGTTAAATGCCTAAGAAGTTTTCTAAAAATTTTGTAAAGG
2241 CACTGTCAGAGAATCTGGAGTTGAATGATTATTCCAGATACTGTATAACCTGCATAACTTTTTGTCTTTAAGTCGTGTTT
2321 GTAAAAGAAGTAATTGCTAGAAACATTTGATAATGTACAAAGTAGTCTATAATGACTGTTCAGTACATTTTTAATATTTT
2401 TTTGGTTATATCCAACTTTTTGTAAATATACTGGAAGCTTGATAATAAAATGTATTTCCTATCACCATACTTTTCCATGT
2481 GAAAACCTGAGCCTATTTCTAGTATAAGTATCCAAAGAAAAGTTTGACCTGGTTGTGTTATTTTACCAGACCTTGGTAAA
2561 AGAACTATTTTGGAAACAGTATTTGTAAATGGAACTAATGCTATATTTAAAAACACTGATTTTTTTTTAACCTGCCAAAA
2641 ATAAAAAAAAGCTCATTTTATAATTTTCTACTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agaCUAGUC--CGUU--UCA-ACGUCc 5'
             || :||  ||||  ||| ||||| 
Target 5' aaaGAATAGTAGCAAACAGTATGCAGt 3'
 1644 - 1670 131.00 -9.90
2 
miRNA  3' agACUAG--UC-CGUUUCAACGUcc 5'
            ||:||  || || :|||||:|  
Target 5' gcTGGTCTAAGTGCTGAGTTGTAtg 3'
 750 - 774 130.00 -18.50
3 
miRNA  3' agacUAGUCCGUUUCAACGUCc 5'
              ||::|||    |||||| 
Target 5' gcctATTGGGCT---TTGCAGa 3'
 1001 - 1019 126.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1838602 18 COSMIC
COSN30483174 32 COSMIC
COSN30155738 35 COSMIC
COSN30456936 36 COSMIC
COSN510207 45 COSMIC
COSN30506654 56 COSMIC
COSN18726996 71 COSMIC
COSN30524255 75 COSMIC
COSN26008554 328 COSMIC
COSN32061054 329 COSMIC
COSN6420374 340 COSMIC
COSN5792020 372 COSMIC
COSN4804155 426 COSMIC
COSN1238336 447 COSMIC
COSN5503263 805 COSMIC
COSN19357703 993 COSMIC
COSN9999755 1163 COSMIC
COSN20096522 1285 COSMIC
COSN27225122 1286 COSMIC
COSN32065143 1322 COSMIC
COSN20096521 1548 COSMIC
COSN27438509 1549 COSMIC
COSN23597223 1598 COSMIC
COSN8609182 1711 COSMIC
COSN30543617 1741 COSMIC
COSN31514996 1792 COSMIC
COSN28696653 1843 COSMIC
COSN31532642 1964 COSMIC
COSN31544623 1968 COSMIC
COSN17037623 1972 COSMIC
COSN7127837 1973 COSMIC
COSN25271879 2071 COSMIC
COSN31561830 2078 COSMIC
COSN20090517 2130 COSMIC
COSN32062751 2174 COSMIC
COSN25919803 2337 COSMIC
COSN21606441 2410 COSMIC
COSN1838600 2504 COSMIC
COSN22772120 2592 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1226864293 1 dbSNP
rs140587747 1 dbSNP
rs151034144 1 dbSNP
rs79875666 1 dbSNP
rs771919649 2 dbSNP
rs755225629 6 dbSNP
rs1291653197 7 dbSNP
rs1449511475 11 dbSNP
rs1217747422 12 dbSNP
rs1286370721 13 dbSNP
rs1034732705 22 dbSNP
rs745897061 23 dbSNP
rs750521855 27 dbSNP
rs757510331 32 dbSNP
rs749570736 38 dbSNP
rs1272891328 39 dbSNP
rs778253341 40 dbSNP
rs944383146 41 dbSNP
rs370419695 49 dbSNP
rs910261612 57 dbSNP
rs985881487 65 dbSNP
rs563387887 70 dbSNP
rs1056021 71 dbSNP
rs578225844 77 dbSNP
rs553375427 91 dbSNP
rs754006585 99 dbSNP
rs1391325290 103 dbSNP
rs1370837682 107 dbSNP
rs934667684 110 dbSNP
rs1304821241 112 dbSNP
rs1034959304 115 dbSNP
rs943468593 119 dbSNP
rs78325471 120 dbSNP
rs1297215837 122 dbSNP
rs985001412 126 dbSNP
rs1330961998 137 dbSNP
rs113540338 141 dbSNP
rs952300707 142 dbSNP
rs1261031688 145 dbSNP
rs919532371 146 dbSNP
rs969383499 147 dbSNP
rs1235827343 149 dbSNP
rs1474897579 150 dbSNP
rs1183168012 152 dbSNP
rs1414389386 159 dbSNP
rs574122387 162 dbSNP
rs1023715515 165 dbSNP
rs1453580096 172 dbSNP
rs1005666513 176 dbSNP
rs55916526 180 dbSNP
rs1026208728 181 dbSNP
rs1353057524 183 dbSNP
rs994358809 183 dbSNP
rs1455627418 185 dbSNP
rs1022450352 187 dbSNP
rs199814421 187 dbSNP
rs777509156 187 dbSNP
rs1236661639 192 dbSNP
rs1248562403 202 dbSNP
rs1259903856 209 dbSNP
rs1195440060 221 dbSNP
rs901386722 221 dbSNP
rs1041301919 229 dbSNP
rs1276335594 231 dbSNP
rs1485392951 236 dbSNP
rs1182971639 238 dbSNP
rs1052354706 240 dbSNP
rs1209093562 241 dbSNP
rs1378600073 244 dbSNP
rs1479188499 245 dbSNP
rs1171345625 250 dbSNP
rs777689505 253 dbSNP
rs532477575 258 dbSNP
rs1308077729 259 dbSNP
rs1372072599 262 dbSNP
rs1237193473 263 dbSNP
rs1333469151 265 dbSNP
rs1305799849 270 dbSNP
rs565088562 271 dbSNP
rs1235065114 273 dbSNP
rs1301232493 274 dbSNP
rs1347053808 275 dbSNP
rs1305739161 276 dbSNP
rs1206009174 280 dbSNP
rs888815639 283 dbSNP
rs1040439837 284 dbSNP
rs1479671878 293 dbSNP
rs549982491 295 dbSNP
rs946493127 299 dbSNP
rs910669054 309 dbSNP
rs1375890028 311 dbSNP
rs1395048768 313 dbSNP
rs1450609378 314 dbSNP
rs58356461 314 dbSNP
rs1388368527 315 dbSNP
rs915017174 315 dbSNP
rs1370221023 316 dbSNP
rs386389942 317 dbSNP
rs1417860456 322 dbSNP
rs988352610 324 dbSNP
rs1266323523 326 dbSNP
rs796675731 326 dbSNP
rs1330569669 328 dbSNP
rs796092492 328 dbSNP
rs1491247102 329 dbSNP
rs1191058832 330 dbSNP
rs143440093 330 dbSNP
rs1465596027 330 dbSNP
rs1491233547 330 dbSNP
rs201233936 330 dbSNP
rs1491442563 331 dbSNP
rs1197869578 332 dbSNP
rs1491206266 332 dbSNP
rs865984021 332 dbSNP
rs1316640073 334 dbSNP
rs1448237273 336 dbSNP
rs200415409 336 dbSNP
rs1245802571 337 dbSNP
rs537099976 337 dbSNP
rs866617069 338 dbSNP
rs1181105899 339 dbSNP
rs1405531112 339 dbSNP
rs1418250944 340 dbSNP
rs1419755907 341 dbSNP
rs1049586241 342 dbSNP
rs1207794862 342 dbSNP
rs930828652 342 dbSNP
rs1186106433 343 dbSNP
rs1281902336 343 dbSNP
rs1296461306 343 dbSNP
rs1203563140 345 dbSNP
rs1264823328 347 dbSNP
rs113064497 355 dbSNP
rs1217285152 355 dbSNP
rs139159885 355 dbSNP
rs1191525019 359 dbSNP
rs1258734020 359 dbSNP
rs2110964 361 dbSNP
rs1023663160 367 dbSNP
rs1260653578 371 dbSNP
rs551440814 376 dbSNP
rs539051125 386 dbSNP
rs928200562 394 dbSNP
rs1437677276 396 dbSNP
rs923851753 398 dbSNP
rs181949453 403 dbSNP
rs1291031469 406 dbSNP
rs767887470 418 dbSNP
rs547348927 419 dbSNP
rs1298941929 424 dbSNP
rs141249581 428 dbSNP
rs1215792549 434 dbSNP
rs751222064 438 dbSNP
rs1306558188 445 dbSNP
rs1222106327 447 dbSNP
rs1355852826 449 dbSNP
rs989595754 452 dbSNP
rs965613706 453 dbSNP
rs1019816878 454 dbSNP
rs1192964501 457 dbSNP
rs2160395 458 dbSNP
rs1166196338 459 dbSNP
rs1030874054 460 dbSNP
rs1406152955 461 dbSNP
rs1167288708 466 dbSNP
rs1380326752 473 dbSNP
rs1440570658 483 dbSNP
rs1321866914 487 dbSNP
rs1384076082 491 dbSNP
rs998017381 498 dbSNP
rs762502610 501 dbSNP
rs888764821 505 dbSNP
rs764318568 507 dbSNP
rs1274619114 508 dbSNP
rs1365661032 519 dbSNP
rs1163044103 521 dbSNP
rs1475034992 522 dbSNP
rs1245307419 523 dbSNP
rs761116023 524 dbSNP
rs1007573375 527 dbSNP
rs1191190437 528 dbSNP
rs1258498684 531 dbSNP
rs188065403 536 dbSNP
rs1010586579 550 dbSNP
rs1445666735 552 dbSNP
rs151059626 556 dbSNP
rs1461289643 557 dbSNP
rs1052194826 559 dbSNP
rs897908990 560 dbSNP
rs1206291112 563 dbSNP
rs10184179 564 dbSNP
rs1270799483 566 dbSNP
rs1399480930 568 dbSNP
rs927845310 571 dbSNP
rs545419412 579 dbSNP
rs1046326063 584 dbSNP
rs947926614 587 dbSNP
rs1344121257 595 dbSNP
rs916511984 597 dbSNP
rs984086420 598 dbSNP
rs1294752426 600 dbSNP
rs928231736 620 dbSNP
rs761841849 626 dbSNP
rs952744461 627 dbSNP
rs1224919699 630 dbSNP
rs918663266 644 dbSNP
rs183739454 648 dbSNP
rs965916393 650 dbSNP
rs1383897926 653 dbSNP
rs1019764965 666 dbSNP
rs1203355007 672 dbSNP
rs947748887 677 dbSNP
rs560015692 681 dbSNP
rs776662349 684 dbSNP
rs1213076684 687 dbSNP
rs1255759404 689 dbSNP
rs1474997157 689 dbSNP
rs560199656 694 dbSNP
rs1365919603 702 dbSNP
rs1460988045 706 dbSNP
rs956702115 708 dbSNP
rs58603228 710 dbSNP
rs1030740133 716 dbSNP
rs1167397247 722 dbSNP
rs1403504249 724 dbSNP
rs1434841132 730 dbSNP
rs1474618769 731 dbSNP
rs1314170091 732 dbSNP
rs570352481 735 dbSNP
rs976612335 739 dbSNP
rs1021841577 745 dbSNP
rs1010952552 759 dbSNP
rs60264618 760 dbSNP
rs893513742 764 dbSNP
rs1430868332 766 dbSNP
rs555948842 770 dbSNP
rs1236589448 784 dbSNP
rs965181519 788 dbSNP
rs1018225175 791 dbSNP
rs537637113 806 dbSNP
rs1251700066 818 dbSNP
rs1212451920 824 dbSNP
rs1206179219 828 dbSNP
rs1468563962 837 dbSNP
rs772628803 844 dbSNP
rs1252867403 845 dbSNP
rs1274613442 865 dbSNP
rs35403744 866 dbSNP
rs142854008 867 dbSNP
rs999304674 872 dbSNP
rs545079353 873 dbSNP
rs1270607368 875 dbSNP
rs768576084 876 dbSNP
rs1368607055 880 dbSNP
rs1302617085 882 dbSNP
rs1440199916 886 dbSNP
rs1395373670 887 dbSNP
rs1433510298 887 dbSNP
rs28698067 888 dbSNP
rs1398150694 890 dbSNP
rs1408496684 891 dbSNP
rs1396208964 895 dbSNP
rs1168795964 898 dbSNP
rs1389531088 912 dbSNP
rs1327926341 920 dbSNP
rs1371390145 926 dbSNP
rs1443018034 929 dbSNP
rs1387825477 936 dbSNP
rs1046232834 939 dbSNP
rs1451726947 940 dbSNP
rs1028108072 944 dbSNP
rs191636637 947 dbSNP
rs74446029 957 dbSNP
rs916461358 964 dbSNP
rs1195643147 970 dbSNP
rs1048380957 973 dbSNP
rs1254032061 975 dbSNP
rs1470049377 986 dbSNP
rs1036375064 988 dbSNP
rs1252902479 989 dbSNP
rs1454318251 992 dbSNP
rs1170532446 996 dbSNP
rs931297969 997 dbSNP
rs1460164883 1005 dbSNP
rs939540019 1006 dbSNP
rs1394985801 1012 dbSNP
rs1462776124 1013 dbSNP
rs1254383356 1018 dbSNP
rs1179224156 1023 dbSNP
rs1370117950 1025 dbSNP
rs1382912457 1031 dbSNP
rs918624001 1034 dbSNP
rs1324698895 1035 dbSNP
rs906670952 1042 dbSNP
rs1337472788 1043 dbSNP
rs1436803045 1048 dbSNP
rs1486474016 1053 dbSNP
rs1188746403 1059 dbSNP
rs1263228568 1061 dbSNP
rs1461449346 1062 dbSNP
rs1426179226 1064 dbSNP
rs1045327737 1073 dbSNP
rs547680215 1083 dbSNP
rs1197289468 1093 dbSNP
rs1162520600 1094 dbSNP
rs537677374 1102 dbSNP
rs965469295 1103 dbSNP
rs1290488873 1105 dbSNP
rs1382917856 1106 dbSNP
rs912660926 1108 dbSNP
rs1294182610 1114 dbSNP
rs769331142 1121 dbSNP
rs1357603757 1123 dbSNP
rs1231912343 1130 dbSNP
rs535343510 1133 dbSNP
rs915494181 1136 dbSNP
rs1317828747 1140 dbSNP
rs954216562 1146 dbSNP
rs1053886896 1150 dbSNP
rs1021831744 1168 dbSNP
rs1215220422 1177 dbSNP
rs1257870292 1178 dbSNP
rs771231205 1180 dbSNP
rs923700519 1183 dbSNP
rs1440130472 1185 dbSNP
rs568011400 1188 dbSNP
rs1419406944 1189 dbSNP
rs749437229 1193 dbSNP
rs549605993 1194 dbSNP
rs957921370 1198 dbSNP
rs1361970237 1201 dbSNP
rs1453236008 1205 dbSNP
rs116217579 1207 dbSNP
rs1377298365 1222 dbSNP
rs7567103 1231 dbSNP
rs1312457734 1233 dbSNP
rs1225811598 1237 dbSNP
rs985307073 1245 dbSNP
rs867450517 1247 dbSNP
rs952760232 1248 dbSNP
rs1238869028 1254 dbSNP
rs1173532270 1256 dbSNP
rs1486326704 1259 dbSNP
rs551555589 1265 dbSNP
rs1435963343 1266 dbSNP
rs1427878368 1268 dbSNP
rs533376839 1277 dbSNP
rs1156229594 1283 dbSNP
rs1236484009 1285 dbSNP
rs1026889085 1288 dbSNP
rs1233044618 1296 dbSNP
rs11382925 1297 dbSNP
rs1248408100 1297 dbSNP
rs199847742 1297 dbSNP
rs397773479 1297 dbSNP
rs539258694 1297 dbSNP
rs1175686150 1298 dbSNP
rs1183597144 1300 dbSNP
rs1444895961 1302 dbSNP
rs1484548563 1303 dbSNP
rs1256623910 1304 dbSNP
rs906244228 1308 dbSNP
rs961994279 1309 dbSNP
rs148534582 1315 dbSNP
rs1003549386 1318 dbSNP
rs541712527 1325 dbSNP
rs756094157 1330 dbSNP
rs529658281 1335 dbSNP
rs906619992 1337 dbSNP
rs113400028 1340 dbSNP
rs1277521596 1341 dbSNP
rs555421185 1351 dbSNP
rs12469082 1352 dbSNP
rs931274549 1358 dbSNP
rs897075860 1361 dbSNP
rs935005041 1367 dbSNP
rs1037010581 1368 dbSNP
rs1040722372 1368 dbSNP
rs944043577 1369 dbSNP
rs1420562739 1372 dbSNP
rs1312719979 1379 dbSNP
rs910953955 1382 dbSNP
rs73927425 1384 dbSNP
rs952546900 1385 dbSNP
rs1328574141 1388 dbSNP
rs1399589408 1389 dbSNP
rs985542006 1390 dbSNP
rs972585184 1396 dbSNP
rs557852035 1397 dbSNP
rs962026797 1398 dbSNP
rs1215997926 1400 dbSNP
rs751981211 1404 dbSNP
rs1270389061 1406 dbSNP
rs1160917638 1408 dbSNP
rs1491566225 1412 dbSNP
rs1014912708 1413 dbSNP
rs914763995 1413 dbSNP
rs1416733790 1419 dbSNP
rs1220662141 1429 dbSNP
rs747201275 1429 dbSNP
rs990739583 1430 dbSNP
rs567036244 1436 dbSNP
rs545541234 1440 dbSNP
rs536292469 1442 dbSNP
rs1475760784 1444 dbSNP
rs1012844639 1450 dbSNP
rs893952621 1459 dbSNP
rs114256581 1461 dbSNP
rs117204682 1462 dbSNP
rs902763077 1472 dbSNP
rs1446471916 1473 dbSNP
rs115198872 1476 dbSNP
rs1294914518 1477 dbSNP
rs377467038 1479 dbSNP
rs528407890 1480 dbSNP
rs1227702014 1492 dbSNP
rs1284801928 1496 dbSNP
rs1230454159 1498 dbSNP
rs943669971 1505 dbSNP
rs1012026511 1506 dbSNP
rs1292936545 1509 dbSNP
rs1262820192 1510 dbSNP
rs1234228683 1511 dbSNP
rs1190251210 1513 dbSNP
rs889545903 1514 dbSNP
rs1049452995 1522 dbSNP
rs750004268 1525 dbSNP
rs1410762530 1531 dbSNP
rs373705263 1532 dbSNP
rs1402008154 1533 dbSNP
rs931158235 1534 dbSNP
rs1345256015 1535 dbSNP
rs1415021964 1538 dbSNP
rs1314287589 1539 dbSNP
rs1321904163 1543 dbSNP
rs1459418526 1544 dbSNP
rs1393227353 1545 dbSNP
rs1165224843 1547 dbSNP
rs764825697 1548 dbSNP
rs1026790540 1552 dbSNP
rs1352741848 1559 dbSNP
rs1285405131 1561 dbSNP
rs1348636982 1561 dbSNP
rs919742276 1561 dbSNP
rs1213323710 1564 dbSNP
rs1255642253 1564 dbSNP
rs568048828 1566 dbSNP
rs972527508 1570 dbSNP
rs1185857918 1571 dbSNP
rs1469063133 1571 dbSNP
rs995764611 1573 dbSNP
rs1158499215 1574 dbSNP
rs556017911 1575 dbSNP
rs1037362026 1576 dbSNP
rs1475736135 1577 dbSNP
rs1249838853 1578 dbSNP
rs761161408 1580 dbSNP
rs1329280140 1586 dbSNP
rs944032146 1591 dbSNP
rs754667392 1592 dbSNP
rs1049779946 1594 dbSNP
rs188154297 1595 dbSNP
rs1467210536 1598 dbSNP
rs1254555189 1601 dbSNP
rs565692984 1607 dbSNP
rs1024141161 1610 dbSNP
rs914661984 1621 dbSNP
rs990894195 1623 dbSNP
rs1178591950 1625 dbSNP
rs990297008 1627 dbSNP
rs746819115 1635 dbSNP
rs934833448 1636 dbSNP
rs1032538078 1637 dbSNP
rs924881693 1638 dbSNP
rs982141150 1643 dbSNP
rs1168097455 1644 dbSNP
rs547387396 1650 dbSNP
rs1463850714 1657 dbSNP
rs145265371 1669 dbSNP
rs1363188770 1671 dbSNP
rs917619158 1673 dbSNP
rs1438019904 1679 dbSNP
rs1299301442 1680 dbSNP
rs889435735 1682 dbSNP
rs1049956651 1685 dbSNP
rs1272096548 1688 dbSNP
rs1316495752 1696 dbSNP
rs990498614 1701 dbSNP
rs898220604 1702 dbSNP
rs1470207377 1703 dbSNP
rs1208512986 1706 dbSNP
rs1264694538 1707 dbSNP
rs959087673 1709 dbSNP
rs533221026 1712 dbSNP
rs995316895 1716 dbSNP
rs928562810 1717 dbSNP
rs1169678262 1721 dbSNP
rs1394873991 1723 dbSNP
rs1326132852 1732 dbSNP
rs1331422941 1733 dbSNP
rs981283543 1737 dbSNP
rs139762171 1738 dbSNP
rs1320578017 1749 dbSNP
rs1338703400 1751 dbSNP
rs1218467104 1754 dbSNP
rs529823398 1757 dbSNP
rs916554071 1758 dbSNP
rs1243285754 1761 dbSNP
rs1015506824 1771 dbSNP
rs1169417001 1771 dbSNP
rs2160396 1772 dbSNP
rs547511671 1773 dbSNP
rs1391882169 1774 dbSNP
rs35461266 1777 dbSNP
rs1205205227 1779 dbSNP
rs1264957296 1790 dbSNP
rs1487112426 1790 dbSNP
rs1192400817 1805 dbSNP
rs561626128 1805 dbSNP
rs1162654423 1811 dbSNP
rs958190482 1811 dbSNP
rs1367789148 1820 dbSNP
rs891111485 1822 dbSNP
rs529286246 1823 dbSNP
rs1290691626 1826 dbSNP
rs1358638482 1829 dbSNP
rs1399632912 1835 dbSNP
rs1049696433 1841 dbSNP
rs11124570 1843 dbSNP
rs1191978440 1846 dbSNP
rs749545035 1847 dbSNP
rs1312717548 1849 dbSNP
rs1318037626 1853 dbSNP
rs893188553 1854 dbSNP
rs1204218487 1856 dbSNP
rs1008451497 1864 dbSNP
rs1257750444 1866 dbSNP
rs1054983264 1868 dbSNP
rs1028012955 1869 dbSNP
rs995577959 1871 dbSNP
rs934844046 1873 dbSNP
rs924798508 1874 dbSNP
rs1390124049 1875 dbSNP
rs1036704975 1877 dbSNP
rs1174542256 1879 dbSNP
rs1167370182 1881 dbSNP
rs544097051 1885 dbSNP
rs147438517 1892 dbSNP
rs1464908962 1894 dbSNP
rs1046001678 1899 dbSNP
rs1374430847 1901 dbSNP
rs950251187 1902 dbSNP
rs564478072 1904 dbSNP
rs767492272 1914 dbSNP
rs1238747747 1930 dbSNP
rs1374076663 1930 dbSNP
rs1280678581 1931 dbSNP
rs1313575477 1938 dbSNP
rs990444854 1941 dbSNP
rs1255197388 1944 dbSNP
rs1480812610 1957 dbSNP
rs959304771 1957 dbSNP
rs1180486828 1962 dbSNP
rs769925191 1969 dbSNP
rs868279514 1972 dbSNP
rs1045634704 1973 dbSNP
rs546377298 1973 dbSNP
rs915813703 1973 dbSNP
rs1175582809 1982 dbSNP
rs1355506492 1983 dbSNP
rs1388027628 1987 dbSNP
rs572087144 1988 dbSNP
rs936636551 1989 dbSNP
rs748295410 1992 dbSNP
rs184889611 1996 dbSNP
rs1442629677 1998 dbSNP
rs1303520127 2000 dbSNP
rs1372219112 2005 dbSNP
rs1008036274 2006 dbSNP
rs1300103815 2006 dbSNP
rs1307901828 2007 dbSNP
rs1200303146 2008 dbSNP
rs779097796 2010 dbSNP
rs1256144490 2011 dbSNP
rs955254097 2021 dbSNP
rs1434089147 2025 dbSNP
rs1457273064 2025 dbSNP
rs1028205728 2026 dbSNP
rs192816821 2027 dbSNP
rs1248564956 2028 dbSNP
rs1477055404 2029 dbSNP
rs1395624835 2030 dbSNP
rs574067334 2042 dbSNP
rs547845034 2044 dbSNP
rs1420453020 2049 dbSNP
rs996796199 2052 dbSNP
rs1168960363 2053 dbSNP
rs556054237 2054 dbSNP
rs1423287689 2058 dbSNP
rs1462429251 2059 dbSNP
rs537705911 2068 dbSNP
rs1351137798 2070 dbSNP
rs893167923 2076 dbSNP
rs987355932 2079 dbSNP
rs1176890864 2081 dbSNP
rs1220028567 2087 dbSNP
rs954358301 2089 dbSNP
rs1317033518 2090 dbSNP
rs1028985361 2092 dbSNP
rs375900409 2096 dbSNP
rs1291913383 2098 dbSNP
rs368098637 2102 dbSNP
rs567246117 2102 dbSNP
rs1220919067 2111 dbSNP
rs1242968774 2117 dbSNP
rs1489399311 2119 dbSNP
rs1209341837 2120 dbSNP
rs570628814 2129 dbSNP
rs1054528266 2130 dbSNP
rs1165557498 2139 dbSNP
rs1412260402 2140 dbSNP
rs1347725979 2144 dbSNP
rs1163478738 2148 dbSNP
rs962312587 2151 dbSNP
rs1295913993 2152 dbSNP
rs200566722 2152 dbSNP
rs374326309 2152 dbSNP
rs1234716558 2153 dbSNP
rs1003888000 2155 dbSNP
rs933518009 2157 dbSNP
rs999374729 2163 dbSNP
rs200461937 2166 dbSNP
rs1228696840 2169 dbSNP
rs1448446592 2172 dbSNP
rs906946255 2182 dbSNP
rs1354147810 2184 dbSNP
rs1352079805 2185 dbSNP
rs903280305 2187 dbSNP
rs1310786116 2190 dbSNP
rs1045908700 2192 dbSNP
rs950199489 2193 dbSNP
rs1262715671 2201 dbSNP
rs1413945470 2202 dbSNP
rs1486242727 2208 dbSNP
rs1045562381 2218 dbSNP
rs1236030282 2219 dbSNP
rs1375948097 2225 dbSNP
rs529700309 2229 dbSNP
rs1178243751 2232 dbSNP
rs768897773 2233 dbSNP
rs1420965531 2234 dbSNP
rs1156505268 2236 dbSNP
rs533978632 2239 dbSNP
rs1359490386 2243 dbSNP
rs1414881097 2248 dbSNP
rs1335946642 2249 dbSNP
rs1338410676 2255 dbSNP
rs937687871 2265 dbSNP
rs919607835 2277 dbSNP
rs1379269723 2278 dbSNP
rs1238013464 2279 dbSNP
rs973834462 2281 dbSNP
rs1348889070 2293 dbSNP
rs1202327030 2294 dbSNP
rs1276988735 2300 dbSNP
rs1442158622 2302 dbSNP
rs1205895132 2304 dbSNP
rs1441078419 2304 dbSNP
rs1176217468 2305 dbSNP
rs1054743548 2310 dbSNP
rs1478152365 2310 dbSNP
rs1173928001 2314 dbSNP
rs1046927 2315 dbSNP
rs1413675792 2334 dbSNP
rs1362178175 2335 dbSNP
rs1332003406 2339 dbSNP
rs1402355472 2340 dbSNP
rs142689216 2349 dbSNP
rs986565551 2354 dbSNP
rs1473076228 2366 dbSNP
rs955244037 2372 dbSNP
rs1028195686 2373 dbSNP
rs1414488099 2377 dbSNP
rs1331715138 2381 dbSNP
rs1235732359 2386 dbSNP
rs1186179126 2389 dbSNP
rs1042400166 2392 dbSNP
rs1199662241 2394 dbSNP
rs1485570128 2395 dbSNP
rs1257448269 2397 dbSNP
rs1198491815 2399 dbSNP
rs11449539 2404 dbSNP
rs1451628149 2404 dbSNP
rs397941182 2404 dbSNP
rs9318 2406 dbSNP
rs1375538473 2411 dbSNP
rs1259689120 2420 dbSNP
rs568425740 2429 dbSNP
rs912648517 2437 dbSNP
rs550500658 2439 dbSNP
rs1464027950 2455 dbSNP
rs1330536283 2458 dbSNP
rs987021210 2460 dbSNP
rs957382172 2466 dbSNP
rs1033399324 2477 dbSNP
rs1330691982 2479 dbSNP
rs998886286 2487 dbSNP
rs903226844 2489 dbSNP
rs1291090587 2491 dbSNP
rs1280492864 2497 dbSNP
rs954320130 2504 dbSNP
rs1024403813 2508 dbSNP
rs1266523607 2508 dbSNP
rs1014422768 2510 dbSNP
rs1264586256 2511 dbSNP
rs921529346 2511 dbSNP
rs974704875 2512 dbSNP
rs1193885003 2517 dbSNP
rs1265091791 2521 dbSNP
rs1476707338 2522 dbSNP
rs764381522 2525 dbSNP
rs8243 2526 dbSNP
rs1380526971 2531 dbSNP
rs1015239947 2544 dbSNP
rs1161545864 2545 dbSNP
rs1390017869 2558 dbSNP
rs564792147 2568 dbSNP
rs1300216810 2570 dbSNP
rs1382868047 2571 dbSNP
rs561619293 2583 dbSNP
rs183795605 2594 dbSNP
rs750105574 2600 dbSNP
rs1024442507 2603 dbSNP
rs191184528 2604 dbSNP
rs939713470 2605 dbSNP
rs908294378 2616 dbSNP
rs1358046556 2620 dbSNP
rs1032943046 2629 dbSNP
rs1287685348 2629 dbSNP
rs1475074665 2631 dbSNP
rs1487226897 2633 dbSNP
rs767819072 2634 dbSNP
rs1369469928 2635 dbSNP
rs1190221222 2636 dbSNP
rs986554278 2640 dbSNP
rs1261658715 2642 dbSNP
rs933808761 2643 dbSNP
rs1185275966 2645 dbSNP
rs1367988749 2647 dbSNP
rs1420358747 2650 dbSNP
rs1160720929 2651 dbSNP
rs564837742 2651 dbSNP
rs1419540059 2652 dbSNP
rs1303797686 2653 dbSNP
rs903084325 2654 dbSNP
rs1042451564 2660 dbSNP
rs1312606800 2661 dbSNP
rs79585227 2668 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BACD3
Disease MIMAT0019927
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020025. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020025
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BACD3 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000379066.1 | 3UTR | GCCUAUUGGGCUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
313 hsa-miR-4772-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT079462 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT092011 SNRK SNF related kinase 2 10
MIRT259504 TXLNG taxilin gamma 2 2
MIRT286668 ZNF207 zinc finger protein 207 2 2
MIRT393055 RSBN1L round spermatid basic protein 1 like 2 2
MIRT443335 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443430 MAPT microtubule associated protein tau 2 2
MIRT454267 PSMA1 proteasome subunit alpha 1 2 2
MIRT461774 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT473561 MATR3 matrin 3 2 2
MIRT495678 PRKD3 protein kinase D3 2 2
MIRT502649 DCTN5 dynactin subunit 5 2 8
MIRT503958 ZNF180 zinc finger protein 180 2 6
MIRT504114 GPR158 G protein-coupled receptor 158 2 2
MIRT513556 IL5 interleukin 5 2 2
MIRT529025 EXOC8 exocyst complex component 8 2 2
MIRT530632 PPIC peptidylprolyl isomerase C 2 4
MIRT536889 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT537224 GATA6 GATA binding protein 6 2 6
MIRT539006 AVL9 AVL9 cell migration associated 2 2
MIRT539129 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT539572 CNKSR3 CNKSR family member 3 2 2
MIRT556145 MED12L mediator complex subunit 12 like 2 2
MIRT559481 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT560095 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT561661 RNF11 ring finger protein 11 2 4
MIRT569672 SEC23B Sec23 homolog B, coat complex II component 2 4
MIRT571883 MSL2 MSL complex subunit 2 2 2
MIRT575071 Ets1 E26 avian leukemia oncogene 1, 5' domain 2 4
MIRT607053 IDS iduronate 2-sulfatase 2 2
MIRT607801 RHBDL2 rhomboid like 2 2 4
MIRT608145 SYAP1 synapse associated protein 1 2 4
MIRT609242 SERPINA4 serpin family A member 4 2 2
MIRT612060 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT615120 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT617270 EXOSC10 exosome component 10 2 2
MIRT617684 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT618063 ZNF799 zinc finger protein 799 2 2
MIRT618101 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618487 DENND5B DENN domain containing 5B 2 4
MIRT618801 SPATA21 spermatogenesis associated 21 2 2
MIRT618907 CDK9 cyclin dependent kinase 9 2 2
MIRT619392 RSPH3 radial spoke head 3 homolog 2 2
MIRT619896 NPTXR neuronal pentraxin receptor 2 2
MIRT620069 ZNF85 zinc finger protein 85 2 2
MIRT620085 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620782 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620859 SERPING1 serpin family G member 1 2 2
MIRT621161 RTTN rotatin 2 2
MIRT621217 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT623445 KDM5A lysine demethylase 5A 2 2
MIRT623639 IDE insulin degrading enzyme 2 2
MIRT624190 DDX19B DEAD-box helicase 19B 2 2
MIRT624699 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT624906 CTCFL CCCTC-binding factor like 2 2
MIRT624954 SERF2 small EDRK-rich factor 2 2 2
MIRT625026 ZNF730 zinc finger protein 730 2 2
MIRT625117 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625129 NUP93 nucleoporin 93 2 2
MIRT625145 ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 2 2
MIRT625259 ZNF566 zinc finger protein 566 2 2
MIRT625280 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT625331 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT625466 ZNF135 zinc finger protein 135 2 2
MIRT625525 FGFR1 fibroblast growth factor receptor 1 2 2
MIRT625724 CXorf38 chromosome X open reading frame 38 2 2
MIRT625834 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT625905 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626017 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626048 PDE4C phosphodiesterase 4C 2 2
MIRT626166 RRP1B ribosomal RNA processing 1B 2 2
MIRT626171 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT626348 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626362 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT626442 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT626532 EMCN endomucin 2 2
MIRT626575 MED7 mediator complex subunit 7 2 2
MIRT626639 ZNF551 zinc finger protein 551 2 2
MIRT626666 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT626681 CISD2 CDGSH iron sulfur domain 2 2 2
MIRT626772 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT626788 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT626821 PRR11 proline rich 11 2 2
MIRT626831 ZNF430 zinc finger protein 430 2 2
MIRT626884 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT626941 TTR transthyretin 2 2
MIRT626960 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627454 SYNRG synergin gamma 2 2
MIRT627788 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT627821 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT627949 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT627998 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628019 MAP7 microtubule associated protein 7 2 2
MIRT628051 KIAA1468 KIAA1468 2 2
MIRT628129 HMGB1 high mobility group box 1 2 4
MIRT628143 HM13 histocompatibility minor 13 2 2
MIRT628237 FADS1 fatty acid desaturase 1 2 2
MIRT628794 A2ML1 alpha-2-macroglobulin like 1 2 2
MIRT628874 FAM177A1 family with sequence similarity 177 member A1 2 4
MIRT629251 KDM2B lysine demethylase 2B 2 2
MIRT629320 ZNF487P zinc finger protein 487 1 1
MIRT629361 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT629800 GPR82 G protein-coupled receptor 82 2 2
MIRT629919 POLR2D RNA polymerase II subunit D 2 2
MIRT630099 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT630487 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT630722 FPR1 formyl peptide receptor 1 2 2
MIRT631018 DNAJC22 DnaJ heat shock protein family (Hsp40) member C22 2 2
MIRT631073 ZNF829 zinc finger protein 829 2 2
MIRT631230 C7orf65 chromosome 7 open reading frame 65 2 2
MIRT631248 ABCB5 ATP binding cassette subfamily B member 5 2 2
MIRT631680 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT631780 IL17RA interleukin 17 receptor A 2 2
MIRT632044 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT632132 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT632202 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT632410 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632523 PSMB2 proteasome subunit beta 2 2 2
MIRT632547 PRPF4 pre-mRNA processing factor 4 2 2
MIRT632702 MTA3 metastasis associated 1 family member 3 2 2
MIRT633134 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633365 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT633551 ATAD3C ATPase family, AAA domain containing 3C 2 2
MIRT633698 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT633793 SOX7 SRY-box 7 2 2
MIRT634512 NKAP NFKB activating protein 2 2
MIRT634830 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT634917 RBM4B RNA binding motif protein 4B 2 2
MIRT634972 C8orf17 chromosome 8 open reading frame 17 2 2
MIRT635107 MAVS mitochondrial antiviral signaling protein 2 2
MIRT635199 FXN frataxin 2 2
MIRT635407 KIAA1614 KIAA1614 2 2
MIRT635417 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT635433 LRP10 LDL receptor related protein 10 2 2
MIRT635484 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 2 2
MIRT635513 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT635617 ZNF439 zinc finger protein 439 2 2
MIRT635639 TRMT10B tRNA methyltransferase 10B 2 2
MIRT635736 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT635897 SP110 SP110 nuclear body protein 2 2
MIRT635936 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636019 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636277 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT636287 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT636344 PHAX phosphorylated adaptor for RNA export 2 2
MIRT636472 KLHL7 kelch like family member 7 2 2
MIRT636893 C5orf45 MRN complex interacting protein 2 2
MIRT636984 ZNF561 zinc finger protein 561 2 2
MIRT637041 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT637148 PCDHA6 protocadherin alpha 6 2 4
MIRT637369 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT637379 HINFP histone H4 transcription factor 2 2
MIRT637399 ZNF546 zinc finger protein 546 2 2
MIRT637721 MYOZ3 myozenin 3 2 2
MIRT637771 PDLIM3 PDZ and LIM domain 3 2 2
MIRT637905 FAM153B family with sequence similarity 153 member B 2 2
MIRT638129 UBXN7 UBX domain protein 7 2 2
MIRT638564 IFNE interferon epsilon 2 2
MIRT638581 HYPK huntingtin interacting protein K 2 2
MIRT638792 EDARADD EDAR associated death domain 2 2
MIRT638945 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT640676 ARSK arylsulfatase family member K 2 2
MIRT641734 TXNL1 thioredoxin like 1 2 2
MIRT642163 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT642512 ORC6 origin recognition complex subunit 6 2 2
MIRT642622 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT642701 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643550 C11orf70 chromosome 11 open reading frame 70 2 2
MIRT643868 COX20 COX20, cytochrome c oxidase assembly factor 2 2
MIRT643936 WIPF3 WAS/WASL interacting protein family member 3 2 2
MIRT644034 CENPM centromere protein M 2 2
MIRT644595 SPOP speckle type BTB/POZ protein 2 2
MIRT644693 ZNF320 zinc finger protein 320 2 2
MIRT645122 HES2 hes family bHLH transcription factor 2 2 2
MIRT645614 TSPAN6 tetraspanin 6 2 2
MIRT646260 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT646994 ZNF621 zinc finger protein 621 2 2
MIRT647549 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT648479 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT649069 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT649244 TRIM65 tripartite motif containing 65 2 2
MIRT649301 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT650124 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT650167 USHBP1 USH1 protein network component harmonin binding protein 1 2 2
MIRT651263 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT652140 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652159 TRIM66 tripartite motif containing 66 2 2
MIRT652673 TIMELESS timeless circadian clock 2 2
MIRT654237 RNF115 ring finger protein 115 2 2
MIRT655229 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT655255 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656064 MTMR10 myotubularin related protein 10 2 2
MIRT656575 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656754 LDHA lactate dehydrogenase A 2 2
MIRT657687 GPR155 G protein-coupled receptor 155 2 2
MIRT657811 GJD3 gap junction protein delta 3 2 2
MIRT658403 FAM212B family with sequence similarity 212 member B 2 2
MIRT660211 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660241 BMP7 bone morphogenetic protein 7 2 2
MIRT660450 ATG14 autophagy related 14 2 2
MIRT660546 ARHGAP29 Rho GTPase activating protein 29 2 2
MIRT660620 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660759 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660987 ABHD2 abhydrolase domain containing 2 2 2
MIRT661037 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT661047 RABAC1 Rab acceptor 1 2 2
MIRT661076 FFAR2 free fatty acid receptor 2 2 2
MIRT661152 ZNF101 zinc finger protein 101 2 2
MIRT661278 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT661521 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661710 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT661721 KLF8 Kruppel like factor 8 2 3
MIRT661730 RAB9A RAB9A, member RAS oncogene family 2 2
MIRT662240 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662337 MYLK3 myosin light chain kinase 3 2 2
MIRT662450 SEMA5A semaphorin 5A 2 2
MIRT662743 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662769 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT663012 KIAA1586 KIAA1586 2 2
MIRT663098 THEM4 thioesterase superfamily member 4 2 2
MIRT663800 BET1L Bet1 golgi vesicular membrane trafficking protein like 2 2
MIRT663878 CXorf56 chromosome X open reading frame 56 2 2
MIRT664679 TMEM19 transmembrane protein 19 2 2
MIRT664695 DBF4 DBF4 zinc finger 2 2
MIRT664762 MESDC2 mesoderm development LRP chaperone 2 2
MIRT664774 LIAS lipoic acid synthetase 2 2
MIRT664907 PDE6A phosphodiesterase 6A 2 2
MIRT664925 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT665244 ZNF384 zinc finger protein 384 2 2
MIRT665529 USP14 ubiquitin specific peptidase 14 2 2
MIRT665535 UROS uroporphyrinogen III synthase 2 2
MIRT665630 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT665808 TMEM168 transmembrane protein 168 2 2
MIRT666151 SP2 Sp2 transcription factor 2 2
MIRT666649 RBM48 RNA binding motif protein 48 2 2
MIRT667212 NIPAL1 NIPA like domain containing 1 2 2
MIRT667514 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT667541 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT667962 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT668004 HCFC2 host cell factor C2 2 2
MIRT668101 GK5 glycerol kinase 5 (putative) 2 2
MIRT668151 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668254 FUT11 fucosyltransferase 11 2 2
MIRT668424 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT668468 FADS6 fatty acid desaturase 6 2 2
MIRT668849 CYCS cytochrome c, somatic 2 2
MIRT668985 CIAO1 cytosolic iron-sulfur assembly component 1 2 2
MIRT669020 MPZ myelin protein zero 2 2
MIRT669232 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT671099 ZNF665 zinc finger protein 665 2 2
MIRT671496 SLC38A9 solute carrier family 38 member 9 2 2
MIRT672717 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT672909 KRBA2 KRAB-A domain containing 2 2 2
MIRT672962 ZNF655 zinc finger protein 655 2 2
MIRT673609 HPSE heparanase 2 2
MIRT673740 TCF23 transcription factor 23 2 2
MIRT673755 ZNF333 zinc finger protein 333 2 2
MIRT673780 PROSER2 proline and serine rich 2 2 2
MIRT674217 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674343 KCMF1 potassium channel modulatory factor 1 2 2
MIRT674756 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 2 2
MIRT674811 FAM229B family with sequence similarity 229 member B 2 2
MIRT675173 BPTF bromodomain PHD finger transcription factor 2 2
MIRT675265 ZNF431 zinc finger protein 431 2 2
MIRT675954 FOXK1 forkhead box K1 2 2
MIRT676155 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676195 GSTM3 glutathione S-transferase mu 3 2 2
MIRT676437 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676466 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT676563 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676715 METTL14 methyltransferase like 14 2 2
MIRT677197 MURC caveolae associated protein 4 2 2
MIRT677276 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT677350 POC1A POC1 centriolar protein A 2 2
MIRT677507 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677552 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677621 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677690 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT677748 GNB4 G protein subunit beta 4 2 2
MIRT678106 MICA MHC class I polypeptide-related sequence A 2 2
MIRT678336 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT678454 GLYAT glycine-N-acyltransferase 2 2
MIRT678472 RNF222 ring finger protein 222 2 2
MIRT678560 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT679302 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679371 GP2 glycoprotein 2 2 2
MIRT679380 WDR92 WD repeat domain 92 2 2
MIRT679575 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679683 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT679876 SLC25A51 solute carrier family 25 member 51 2 2
MIRT680092 ETS1 ETS proto-oncogene 1, transcription factor 2 5
MIRT680470 C3 complement C3 2 2
MIRT683082 A1BG alpha-1-B glycoprotein 2 2
MIRT683905 PSMB9 proteasome subunit beta 9 2 2
MIRT684177 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT686213 ZNF267 zinc finger protein 267 2 2
MIRT688737 CNDP1 carnosine dipeptidase 1 2 2
MIRT689035 ANGPTL3 angiopoietin like 3 2 2
MIRT690683 PTCHD3 patched domain containing 3 2 2
MIRT697761 USP37 ubiquitin specific peptidase 37 2 2
MIRT704407 CTPS1 CTP synthase 1 2 2
MIRT705016 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT709567 GYG2 glycogenin 2 2 2
MIRT709955 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710001 TXNDC12 thioredoxin domain containing 12 2 2
MIRT710219 JMJD4 jumonji domain containing 4 2 2
MIRT710478 CDH5 cadherin 5 2 2
MIRT713074 ENTHD1 ENTH domain containing 1 2 2
MIRT713890 RNF19B ring finger protein 19B 2 2
MIRT715337 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT715989 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT720098 SPTLC3 serine palmitoyltransferase long chain base subunit 3 2 2
MIRT720981 METTL21A methyltransferase like 21A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4772-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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