pre-miRNA Information
pre-miRNA hsa-mir-4291   
Genomic Coordinates chr9: 93819357 - 93819421
Description Homo sapiens miR-4291 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4291
Sequence 11| UUCAGCAGGAACAGCU |26
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1265713434 9 dbSNP
rs1433969451 12 dbSNP
rs1372852268 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CD180   
Synonyms LY64, Ly78, RP105
Description CD180 molecule
Transcript NM_005582   
Expression
Putative miRNA Targets on CD180
3'UTR of CD180
(miRNA target sites are highlighted)
>CD180|NM_005582|3'UTR
   1 TGCTGAAGGTTTCCAGAGAAAGCAAATAAGTGTGCTTAGCAAAATTGCTCTAAGTGAAAGAACTGTCATCTGCTGGTGAC
  81 CAGACCAGACTTTTCAGATTGCTTCCTGGAACTGGGCAGGGACTCACTGTGCTTTTCTGAGCTTCTTACTCCTGTGAGTC
 161 CCAGAGCTAAAGAACCTTCTAGGCAAGTACACCGAATGACTCAGTCCAGAGGGTCAGATGCTGCTGTGAGAGGCACAGAG
 241 CCCTTTCCGCATGTGGAAGAGTGGGAGGAAGCAGAGGGAGGGACTGGGCAGGGACTGCCGGCCCCGGAGTCTCCCACAGG
 321 GAGGCCATTCCCCTTCTACTCACCGACATCCCTCCCAGCACCACACACCCCGCCCCTGAAAGGAGATCATCAGCCCCCAC
 401 AATTTGTCAGAGCTGAAGCCAGCCCACTACCCACCCCCACTACAGCATTGTGCTTGGGTCTGGGTTCTCAGTAATGTAGC
 481 CATTTGAGAAACTTACTTGGGGACAAAGTCTCAATCCTTATTTTAAATGAAAAAAGAAAAGAAAAGCATAATAAATTTAA
 561 AAGAAAAGGCTGAGAAATGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGACA-AGGACGACUu 5'
            ||||  :||||||: 
Target 5' aaCTGTCATCTGCTGGt 3'
61 - 77 134.00 -15.20
2
miRNA  3' ucGACAAGGACGACuu 5'
            | | | ||||||  
Target 5' gtCAGATGCTGCTGtg 3'
213 - 228 126.00 -8.70
3
miRNA  3' ucgacaaggACGACUu 5'
                   |||||| 
Target 5' ---------TGCTGAa 3'
1 - 7 120.00 -6.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30141762 26 COSMIC
COSN30676758 33 COSMIC
COSN31522135 37 COSMIC
COSN30515447 39 COSMIC
COSN30492625 47 COSMIC
COSN28766159 59 COSMIC
COSN30496166 65 COSMIC
COSN28822367 160 COSMIC
COSN6925514 181 COSMIC
COSN24073734 362 COSMIC
COSN21313180 397 COSMIC
COSN29928147 600 COSMIC
COSN29903093 908 COSMIC
COSN23220152 1777 COSMIC
COSN7951229 1835 COSMIC
COSN28068704 1872 COSMIC
COSN4851509 1873 COSMIC
COSN4851508 1875 COSMIC
COSN21564541 1947 COSMIC
COSN8228477 2057 COSMIC
COSN15843573 2289 COSMIC
COSN5809975 2581 COSMIC
COSN26824196 3066 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs891798277 9 dbSNP
rs764261269 13 dbSNP
rs1191784818 15 dbSNP
rs763243563 16 dbSNP
rs1422928583 22 dbSNP
rs1378465239 23 dbSNP
rs140321429 25 dbSNP
rs5744527 26 dbSNP
rs760121114 32 dbSNP
rs776941829 37 dbSNP
rs5744528 41 dbSNP
rs1290825836 45 dbSNP
rs747294050 45 dbSNP
rs1166425215 48 dbSNP
rs773597415 51 dbSNP
rs904464382 58 dbSNP
rs2230525 59 dbSNP
rs1316239301 64 dbSNP
rs943191205 68 dbSNP
rs1342349031 69 dbSNP
rs1234435709 71 dbSNP
rs1379186216 74 dbSNP
rs575426264 75 dbSNP
rs1421118266 76 dbSNP
rs911724723 78 dbSNP
rs1293279602 81 dbSNP
rs746429444 84 dbSNP
rs1304098897 93 dbSNP
rs1333107711 99 dbSNP
rs556865552 102 dbSNP
rs1261699567 113 dbSNP
rs1350867330 114 dbSNP
rs1204187304 116 dbSNP
rs58890858 119 dbSNP
rs34803053 137 dbSNP
rs778906167 148 dbSNP
rs1017269462 149 dbSNP
rs182074198 154 dbSNP
rs1188537270 160 dbSNP
rs538796184 179 dbSNP
rs1430863002 183 dbSNP
rs771003235 190 dbSNP
rs749470933 193 dbSNP
rs980769431 194 dbSNP
rs1428458080 204 dbSNP
rs190682990 210 dbSNP
rs1377340529 212 dbSNP
rs142133637 225 dbSNP
rs1007200083 226 dbSNP
rs1024933123 240 dbSNP
rs890090671 242 dbSNP
rs564562758 248 dbSNP
rs368264252 249 dbSNP
rs1308064975 256 dbSNP
rs1205597862 262 dbSNP
rs1316761960 265 dbSNP
rs1237857710 275 dbSNP
rs1803440 276 dbSNP
rs1210933604 278 dbSNP
rs1484619226 279 dbSNP
rs1424115985 285 dbSNP
rs1031659726 292 dbSNP
rs5744529 293 dbSNP
rs904535841 299 dbSNP
rs1037970131 300 dbSNP
rs1415878959 302 dbSNP
rs749517827 303 dbSNP
rs1017490160 305 dbSNP
rs1007894238 306 dbSNP
rs1173021270 306 dbSNP
rs577689374 307 dbSNP
rs1052068312 308 dbSNP
rs1463971846 310 dbSNP
rs1299299363 323 dbSNP
rs1373020031 324 dbSNP
rs145954328 332 dbSNP
rs773425848 344 dbSNP
rs569698567 345 dbSNP
rs1372665488 346 dbSNP
rs1234592504 351 dbSNP
rs988141072 367 dbSNP
rs1309998839 368 dbSNP
rs1411281827 370 dbSNP
rs941663993 371 dbSNP
rs550916015 372 dbSNP
rs1461885820 374 dbSNP
rs979574115 387 dbSNP
rs1254670818 392 dbSNP
rs1454823048 398 dbSNP
rs1351017480 403 dbSNP
rs1193307028 419 dbSNP
rs964159267 425 dbSNP
rs1430425645 426 dbSNP
rs1171694087 428 dbSNP
rs1354424777 430 dbSNP
rs1460940974 431 dbSNP
rs144495046 438 dbSNP
rs949019705 446 dbSNP
rs917412120 448 dbSNP
rs985873286 456 dbSNP
rs779775030 459 dbSNP
rs565584853 467 dbSNP
rs1306789317 469 dbSNP
rs1183086455 486 dbSNP
rs1473706481 491 dbSNP
rs1216726970 496 dbSNP
rs1274808011 497 dbSNP
rs1468793989 498 dbSNP
rs1213275247 500 dbSNP
rs1251414701 505 dbSNP
rs956211389 521 dbSNP
rs954469884 526 dbSNP
rs1249295053 530 dbSNP
rs1031731760 532 dbSNP
rs1419019643 536 dbSNP
rs1427189071 536 dbSNP
rs978851505 536 dbSNP
rs1176442731 540 dbSNP
rs1324771100 547 dbSNP
rs1488751895 547 dbSNP
rs1347718226 551 dbSNP
rs184993398 552 dbSNP
rs1218738076 553 dbSNP
rs1288869818 554 dbSNP
rs1333432035 556 dbSNP
rs758339708 558 dbSNP
rs1268223018 563 dbSNP
rs1016148027 568 dbSNP
rs1487360077 572 dbSNP
rs1229798832 596 dbSNP
rs528539763 597 dbSNP
rs1398050558 599 dbSNP
rs1295105467 606 dbSNP
rs1335200717 608 dbSNP
rs755814029 615 dbSNP
rs1232409253 627 dbSNP
rs5744530 630 dbSNP
rs890390279 633 dbSNP
rs1030222640 634 dbSNP
rs1391229054 639 dbSNP
rs993259607 640 dbSNP
rs1044906025 641 dbSNP
rs543144740 643 dbSNP
rs1487384741 650 dbSNP
rs769825434 650 dbSNP
rs1460345513 651 dbSNP
rs1258880052 653 dbSNP
rs896565869 654 dbSNP
rs575667951 672 dbSNP
rs1163152422 673 dbSNP
rs897668696 678 dbSNP
rs1410623606 683 dbSNP
rs1037374093 684 dbSNP
rs764777524 685 dbSNP
rs1052872960 687 dbSNP
rs1458985353 688 dbSNP
rs1314207264 701 dbSNP
rs1355956316 707 dbSNP
rs1414109805 730 dbSNP
rs1282147324 731 dbSNP
rs1375344944 736 dbSNP
rs1224528249 739 dbSNP
rs147599838 748 dbSNP
rs935307743 752 dbSNP
rs761442588 754 dbSNP
rs1281159670 766 dbSNP
rs904849048 768 dbSNP
rs1180804341 772 dbSNP
rs1433625945 775 dbSNP
rs1186128460 791 dbSNP
rs1234945784 793 dbSNP
rs1045157378 801 dbSNP
rs925545683 805 dbSNP
rs1043929483 812 dbSNP
rs1406736316 813 dbSNP
rs559358849 814 dbSNP
rs1417506430 815 dbSNP
rs1269205077 819 dbSNP
rs1375526774 820 dbSNP
rs193178276 822 dbSNP
rs139736495 827 dbSNP
rs1356044313 831 dbSNP
rs16896377 833 dbSNP
rs763816939 834 dbSNP
rs1374890245 836 dbSNP
rs986928666 854 dbSNP
rs1248064213 868 dbSNP
rs552890421 876 dbSNP
rs1347315064 877 dbSNP
rs1199219617 880 dbSNP
rs775919850 884 dbSNP
rs1438930592 892 dbSNP
rs1204205219 893 dbSNP
rs4700174 896 dbSNP
rs1259846334 897 dbSNP
rs760022372 907 dbSNP
rs1313082036 913 dbSNP
rs1170714069 915 dbSNP
rs774868251 919 dbSNP
rs566956175 920 dbSNP
rs111977927 924 dbSNP
rs1397927159 925 dbSNP
rs1443357972 926 dbSNP
rs1326884910 932 dbSNP
rs749344422 946 dbSNP
rs986512824 947 dbSNP
rs1272023776 953 dbSNP
rs189440421 955 dbSNP
rs114597185 963 dbSNP
rs1013386478 964 dbSNP
rs1470155514 965 dbSNP
rs1215153907 966 dbSNP
rs1315480693 970 dbSNP
rs993375665 975 dbSNP
rs1450718393 977 dbSNP
rs1196073725 979 dbSNP
rs961850877 990 dbSNP
rs1213275689 995 dbSNP
rs1016084575 996 dbSNP
rs1158143882 999 dbSNP
rs1005956409 1010 dbSNP
rs904965025 1012 dbSNP
rs879796252 1027 dbSNP
rs1421173433 1032 dbSNP
rs1462852650 1034 dbSNP
rs1453694446 1036 dbSNP
rs1013641904 1041 dbSNP
rs1390764397 1046 dbSNP
rs1189924642 1049 dbSNP
rs551413381 1053 dbSNP
rs1260443326 1055 dbSNP
rs1327170985 1057 dbSNP
rs1057364469 1063 dbSNP
rs1276918005 1068 dbSNP
rs375674538 1069 dbSNP
rs1234244424 1070 dbSNP
rs924767760 1070 dbSNP
rs538901009 1073 dbSNP
rs1355141656 1075 dbSNP
rs1207708701 1081 dbSNP
rs1043690855 1085 dbSNP
rs1043278293 1096 dbSNP
rs1192809358 1106 dbSNP
rs947596236 1107 dbSNP
rs571865502 1110 dbSNP
rs1258099850 1118 dbSNP
rs1232614879 1120 dbSNP
rs911468869 1122 dbSNP
rs376974414 1126 dbSNP
rs547347760 1128 dbSNP
rs1231262106 1131 dbSNP
rs1456581064 1133 dbSNP
rs1160575729 1134 dbSNP
rs1385733746 1136 dbSNP
rs576169945 1137 dbSNP
rs528781707 1138 dbSNP
rs954830777 1139 dbSNP
rs1404671957 1140 dbSNP
rs1310823499 1141 dbSNP
rs1292996102 1145 dbSNP
rs940421122 1154 dbSNP
rs1242130722 1156 dbSNP
rs923313112 1176 dbSNP
rs1262161858 1180 dbSNP
rs144839684 1185 dbSNP
rs961963111 1186 dbSNP
rs149395728 1191 dbSNP
rs1023519070 1196 dbSNP
rs1187684804 1199 dbSNP
rs78347415 1217 dbSNP
rs750348418 1224 dbSNP
rs1421889620 1227 dbSNP
rs1184212837 1231 dbSNP
rs969263395 1238 dbSNP
rs1023771879 1239 dbSNP
rs1439345732 1242 dbSNP
rs563642437 1245 dbSNP
rs1013340360 1252 dbSNP
rs545475712 1257 dbSNP
rs77443861 1258 dbSNP
rs1485510731 1259 dbSNP
rs1302822680 1262 dbSNP
rs559105537 1263 dbSNP
rs1400472766 1268 dbSNP
rs1393455775 1278 dbSNP
rs1052136639 1280 dbSNP
rs779984576 1281 dbSNP
rs1308183290 1308 dbSNP
rs1275816858 1309 dbSNP
rs999096358 1312 dbSNP
rs1207855440 1315 dbSNP
rs1306447481 1319 dbSNP
rs1338050125 1330 dbSNP
rs903462636 1333 dbSNP
rs757314356 1334 dbSNP
rs947506642 1336 dbSNP
rs1342473621 1338 dbSNP
rs71626488 1338 dbSNP
rs1197287068 1347 dbSNP
rs1050934931 1351 dbSNP
rs933440409 1353 dbSNP
rs1177082908 1357 dbSNP
rs1291739124 1360 dbSNP
rs750156069 1363 dbSNP
rs923262169 1363 dbSNP
rs934164015 1378 dbSNP
rs1376375464 1398 dbSNP
rs184108975 1399 dbSNP
rs540793091 1400 dbSNP
rs138900675 1404 dbSNP
rs1400109036 1409 dbSNP
rs78871774 1413 dbSNP
rs909105964 1422 dbSNP
rs984732908 1425 dbSNP
rs969588584 1436 dbSNP
rs1309648151 1437 dbSNP
rs1023509231 1443 dbSNP
rs1395745053 1444 dbSNP
rs769875585 1447 dbSNP
rs1310313061 1450 dbSNP
rs763578299 1453 dbSNP
rs1457200817 1456 dbSNP
rs760363720 1456 dbSNP
rs1363341836 1458 dbSNP
rs73104005 1459 dbSNP
rs1190625054 1469 dbSNP
rs999161204 1474 dbSNP
rs903527951 1476 dbSNP
rs1171800042 1477 dbSNP
rs1472725997 1482 dbSNP
rs916513438 1487 dbSNP
rs191873751 1491 dbSNP
rs767882463 1501 dbSNP
rs60756388 1510 dbSNP
rs1011868630 1515 dbSNP
rs529492072 1524 dbSNP
rs1030871874 1528 dbSNP
rs889274928 1530 dbSNP
rs1383841893 1533 dbSNP
rs1278808731 1540 dbSNP
rs978319520 1545 dbSNP
rs1216514118 1549 dbSNP
rs1274824156 1550 dbSNP
rs1322483334 1559 dbSNP
rs1221195939 1568 dbSNP
rs372937172 1575 dbSNP
rs1050644821 1582 dbSNP
rs933387909 1586 dbSNP
rs1210506066 1588 dbSNP
rs186785936 1589 dbSNP
rs1271368169 1591 dbSNP
rs1232851392 1600 dbSNP
rs1190444953 1607 dbSNP
rs1419041309 1608 dbSNP
rs1405592296 1610 dbSNP
rs1022299677 1621 dbSNP
rs1347591591 1624 dbSNP
rs1351374988 1627 dbSNP
rs1298295933 1638 dbSNP
rs1289955443 1640 dbSNP
rs1339687308 1644 dbSNP
rs115637395 1648 dbSNP
rs1294896015 1648 dbSNP
rs1379691827 1661 dbSNP
rs1036419230 1665 dbSNP
rs1227938348 1670 dbSNP
rs1335089382 1671 dbSNP
rs535457412 1672 dbSNP
rs1407027415 1681 dbSNP
rs1217370381 1685 dbSNP
rs182332066 1690 dbSNP
rs1487558045 1694 dbSNP
rs909218416 1695 dbSNP
rs1238401754 1704 dbSNP
rs1457413684 1705 dbSNP
rs985111588 1708 dbSNP
rs1413783876 1717 dbSNP
rs1160644530 1719 dbSNP
rs1411112559 1730 dbSNP
rs1420513261 1736 dbSNP
rs771393706 1741 dbSNP
rs1468987373 1756 dbSNP
rs1359415880 1759 dbSNP
rs1417770664 1760 dbSNP
rs1314713528 1768 dbSNP
rs1359493104 1770 dbSNP
rs571905840 1780 dbSNP
rs998472478 1792 dbSNP
rs1241157447 1794 dbSNP
rs1308624724 1794 dbSNP
rs1375728841 1794 dbSNP
rs375008029 1794 dbSNP
rs1442368800 1795 dbSNP
rs1232669808 1797 dbSNP
rs1200130970 1799 dbSNP
rs1458809674 1807 dbSNP
rs1178929917 1812 dbSNP
rs111562744 1813 dbSNP
rs1491541881 1813 dbSNP
rs200668571 1813 dbSNP
rs202026353 1813 dbSNP
rs749198086 1813 dbSNP
rs1037236089 1821 dbSNP
rs1331879501 1823 dbSNP
rs879751857 1823 dbSNP
rs1251180652 1824 dbSNP
rs992017751 1827 dbSNP
rs150636974 1831 dbSNP
rs193007387 1833 dbSNP
rs550049345 1833 dbSNP
rs1218046779 1834 dbSNP
rs796948244 1834 dbSNP
rs1275535581 1835 dbSNP
rs540596566 1835 dbSNP
rs947772015 1835 dbSNP
rs916271604 1839 dbSNP
rs1456187476 1840 dbSNP
rs977837660 1842 dbSNP
rs1246789955 1846 dbSNP
rs1168292816 1848 dbSNP
rs755916245 1848 dbSNP
rs756878147 1848 dbSNP
rs1330066132 1854 dbSNP
rs1324276395 1859 dbSNP
rs1465985933 1859 dbSNP
rs371908787 1859 dbSNP
rs565619007 1859 dbSNP
rs939314911 1861 dbSNP
rs1434914193 1867 dbSNP
rs967701006 1868 dbSNP
rs535202488 1873 dbSNP
rs923817445 1878 dbSNP
rs1349609137 1879 dbSNP
rs1021992648 1880 dbSNP
rs10037350 1881 dbSNP
rs889399428 1883 dbSNP
rs1315611744 1886 dbSNP
rs112418300 1889 dbSNP
rs1435258855 1895 dbSNP
rs1390382097 1901 dbSNP
rs1289956839 1905 dbSNP
rs1450591753 1906 dbSNP
rs112054917 1912 dbSNP
rs563699834 1914 dbSNP
rs1399770179 1918 dbSNP
rs1478112549 1919 dbSNP
rs551615384 1922 dbSNP
rs902028460 1925 dbSNP
rs748339470 1926 dbSNP
rs533264285 1927 dbSNP
rs940818619 1932 dbSNP
rs1164099220 1933 dbSNP
rs1390067162 1934 dbSNP
rs1403636649 1940 dbSNP
rs1300140530 1941 dbSNP
rs1393863269 1943 dbSNP
rs1399937938 1944 dbSNP
rs1193077279 1947 dbSNP
rs1465347600 1949 dbSNP
rs887769634 1950 dbSNP
rs559390238 1953 dbSNP
rs552513084 1954 dbSNP
rs1213846451 1959 dbSNP
rs540827930 1962 dbSNP
rs1284469567 1963 dbSNP
rs904963475 1965 dbSNP
rs1279030568 1970 dbSNP
rs947948754 1974 dbSNP
rs1207506147 1976 dbSNP
rs1287541950 1983 dbSNP
rs916478823 1985 dbSNP
rs573460248 1986 dbSNP
rs1260734468 1989 dbSNP
rs939126966 1992 dbSNP
rs1302665313 1994 dbSNP
rs961658682 1995 dbSNP
rs561874001 1997 dbSNP
rs533005652 1998 dbSNP
rs141549587 1999 dbSNP
rs1429545435 2002 dbSNP
rs967852282 2013 dbSNP
rs1044564984 2014 dbSNP
rs1296942572 2016 dbSNP
rs914872964 2033 dbSNP
rs985118717 2040 dbSNP
rs1335254704 2042 dbSNP
rs189140601 2046 dbSNP
rs1339441153 2047 dbSNP
rs1056139379 2049 dbSNP
rs938974299 2055 dbSNP
rs1353856579 2058 dbSNP
rs1239296891 2060 dbSNP
rs1283746615 2062 dbSNP
rs11740538 2074 dbSNP
rs1450661255 2080 dbSNP
rs1255222293 2081 dbSNP
rs34722794 2082 dbSNP
rs572194208 2087 dbSNP
rs1180811579 2088 dbSNP
rs966180156 2089 dbSNP
rs143612567 2093 dbSNP
rs1156966950 2103 dbSNP
rs946624173 2114 dbSNP
rs915101234 2124 dbSNP
rs1004912890 2126 dbSNP
rs113696175 2130 dbSNP
rs1449982536 2131 dbSNP
rs1332995971 2132 dbSNP
rs183293863 2136 dbSNP
rs191768798 2137 dbSNP
rs1012222055 2152 dbSNP
rs369007741 2169 dbSNP
rs961645396 2172 dbSNP
rs1056391697 2177 dbSNP
rs148873310 2179 dbSNP
rs1200728134 2183 dbSNP
rs145580578 2184 dbSNP
rs1176797073 2196 dbSNP
rs1005829648 2206 dbSNP
rs1434242033 2229 dbSNP
rs149692370 2230 dbSNP
rs1176033720 2232 dbSNP
rs952936642 2242 dbSNP
rs185965195 2244 dbSNP
rs757257712 2245 dbSNP
rs1171855831 2253 dbSNP
rs1379435046 2264 dbSNP
rs1400500368 2266 dbSNP
rs1294669812 2274 dbSNP
rs1295941853 2280 dbSNP
rs1412551233 2289 dbSNP
rs749296439 2292 dbSNP
rs1343600647 2299 dbSNP
rs1042267765 2300 dbSNP
rs1013054177 2312 dbSNP
rs1317456740 2316 dbSNP
rs946559605 2322 dbSNP
rs894896372 2323 dbSNP
rs1312684656 2329 dbSNP
rs1267274606 2331 dbSNP
rs1462915755 2332 dbSNP
rs565842096 2338 dbSNP
rs1056590920 2345 dbSNP
rs1356842460 2353 dbSNP
rs1265823362 2356 dbSNP
rs1479095629 2362 dbSNP
rs914968170 2368 dbSNP
rs1194752761 2379 dbSNP
rs547476602 2384 dbSNP
rs1167943642 2386 dbSNP
rs1409525993 2392 dbSNP
rs985621716 2393 dbSNP
rs1003225705 2395 dbSNP
rs1351086304 2398 dbSNP
rs529098763 2406 dbSNP
rs1292459139 2410 dbSNP
rs1363562125 2412 dbSNP
rs1401778066 2413 dbSNP
rs182508091 2425 dbSNP
rs1278608269 2426 dbSNP
rs1213006935 2430 dbSNP
rs139666295 2430 dbSNP
rs372855928 2430 dbSNP
rs1315052259 2435 dbSNP
rs561701207 2440 dbSNP
rs1474363136 2446 dbSNP
rs1256496531 2449 dbSNP
rs867594879 2452 dbSNP
rs755611037 2458 dbSNP
rs1218071899 2464 dbSNP
rs966297077 2474 dbSNP
rs1015030278 2481 dbSNP
rs190277011 2482 dbSNP
rs184930161 2486 dbSNP
rs1481565395 2488 dbSNP
rs180920539 2494 dbSNP
rs1415456743 2503 dbSNP
rs1027698108 2506 dbSNP
rs1012782573 2508 dbSNP
rs895138737 2516 dbSNP
rs1249607759 2518 dbSNP
rs1203735527 2521 dbSNP
rs1298790793 2536 dbSNP
rs1359850570 2541 dbSNP
rs1428340069 2543 dbSNP
rs1304378571 2556 dbSNP
rs1380088350 2558 dbSNP
rs190283125 2558 dbSNP
rs1321730833 2574 dbSNP
rs549588887 2580 dbSNP
rs893717472 2580 dbSNP
rs1003442374 2581 dbSNP
rs1231029358 2596 dbSNP
rs557897162 2600 dbSNP
rs545687947 2601 dbSNP
rs751915366 2604 dbSNP
rs1212600969 2609 dbSNP
rs946536185 2613 dbSNP
rs766783241 2622 dbSNP
rs1293039308 2624 dbSNP
rs1238421949 2626 dbSNP
rs1392393057 2629 dbSNP
rs1182665142 2635 dbSNP
rs1376162177 2636 dbSNP
rs1240707493 2637 dbSNP
rs1046988418 2640 dbSNP
rs1049489717 2644 dbSNP
rs1442137524 2645 dbSNP
rs763389480 2648 dbSNP
rs922260085 2651 dbSNP
rs574181642 2657 dbSNP
rs1167233771 2658 dbSNP
rs555941769 2669 dbSNP
rs537217489 2673 dbSNP
rs908581823 2674 dbSNP
rs140944380 2679 dbSNP
rs146455822 2690 dbSNP
rs1359596180 2696 dbSNP
rs1447533459 2697 dbSNP
rs952946376 2699 dbSNP
rs1023181099 2704 dbSNP
rs765324667 2705 dbSNP
rs1349085758 2712 dbSNP
rs1035852137 2716 dbSNP
rs6869921 2722 dbSNP
rs76900386 2723 dbSNP
rs746953110 2725 dbSNP
rs1488783059 2728 dbSNP
rs990905597 2729 dbSNP
rs1458819642 2733 dbSNP
rs553843339 2735 dbSNP
rs780123567 2746 dbSNP
rs1020612281 2747 dbSNP
rs535589476 2749 dbSNP
rs893727286 2750 dbSNP
rs1035121232 2767 dbSNP
rs1211331058 2779 dbSNP
rs1413649171 2781 dbSNP
rs1333688668 2782 dbSNP
rs1402641786 2792 dbSNP
rs1466346954 2793 dbSNP
rs529330192 2800 dbSNP
rs1049609284 2803 dbSNP
rs1240751031 2811 dbSNP
rs1439178894 2812 dbSNP
rs187470474 2825 dbSNP
rs1319046039 2831 dbSNP
rs1305340383 2833 dbSNP
rs6890674 2834 dbSNP
rs1372415786 2835 dbSNP
rs1327983991 2836 dbSNP
rs1020829470 2843 dbSNP
rs531359286 2844 dbSNP
rs1011280343 2849 dbSNP
rs1198959416 2855 dbSNP
rs564416080 2858 dbSNP
rs893633168 2865 dbSNP
rs1271642414 2871 dbSNP
rs1438878664 2883 dbSNP
rs61027241 2884 dbSNP
rs1040880797 2892 dbSNP
rs932402272 2894 dbSNP
rs182263512 2899 dbSNP
rs1040787399 2912 dbSNP
rs984122402 2918 dbSNP
rs1478266315 2922 dbSNP
rs1158153976 2926 dbSNP
rs1167593951 2928 dbSNP
rs1394638695 2942 dbSNP
rs372280555 2943 dbSNP
rs1324290767 2944 dbSNP
rs908253630 2945 dbSNP
rs1396874053 2949 dbSNP
rs1191201060 2955 dbSNP
rs1349754200 2962 dbSNP
rs916177058 2980 dbSNP
rs992182790 2984 dbSNP
rs1341566948 2993 dbSNP
rs80204023 3016 dbSNP
rs1269176739 3017 dbSNP
rs930918177 3023 dbSNP
rs1248121597 3029 dbSNP
rs1337075487 3032 dbSNP
rs1036309806 3037 dbSNP
rs1289984796 3041 dbSNP
rs1490161419 3042 dbSNP
rs1220248504 3044 dbSNP
rs756959276 3047 dbSNP
rs977612109 3051 dbSNP
rs1488520346 3053 dbSNP
rs920753229 3054 dbSNP
rs1192247238 3057 dbSNP
rs1371487752 3062 dbSNP
rs1206477973 3092 dbSNP
rs1484708128 3100 dbSNP
rs1259304143 3105 dbSNP
rs1163899174 3112 dbSNP
rs1384761232 3113 dbSNP
rs1215586466 3117 dbSNP
rs1349220054 3124 dbSNP
rs1361759398 3124 dbSNP
rs1399740280 3126 dbSNP
rs1316683898 3143 dbSNP
rs1324260078 3159 dbSNP
rs117510707 3166 dbSNP
rs1284269163 3168 dbSNP
rs1020623442 3170 dbSNP
rs143953810 3171 dbSNP
rs35078063 3180 dbSNP
rs893444363 3181 dbSNP
rs1204270637 3191 dbSNP
rs749197903 3194 dbSNP
rs139114585 3202 dbSNP
rs1027927294 3211 dbSNP
rs997206513 3212 dbSNP
rs1242586892 3213 dbSNP
rs1442807302 3215 dbSNP
rs1160564073 3220 dbSNP
rs1381401473 3222 dbSNP
rs1453688413 3223 dbSNP
rs1296421233 3230 dbSNP
rs901081769 3232 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BACD3
Disease MIMAT0016922
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020025. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucgacaAGGACGACUu 5'
                | ||||||| 
Target 5' -gccuaUGCUGCUGAc 3'
1 - 15
Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020025
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BACD3 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000256447.4 | 3UTR | GCCUAUGCUGCUGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-4291 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102445 CALU calumenin 2 4
MIRT108677 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT125969 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT179018 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT379033 CDK6 cyclin dependent kinase 6 2 6
MIRT442473 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT442910 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT442979 ZNF736 zinc finger protein 736 2 2
MIRT445663 TNFSF15 TNF superfamily member 15 2 2
MIRT446237 FZD6 frizzled class receptor 6 2 2
MIRT448860 FAM49B family with sequence similarity 49 member B 2 2
MIRT455559 TRAF1 TNF receptor associated factor 1 2 2
MIRT459704 ZNF641 zinc finger protein 641 2 2
MIRT460608 FEM1A fem-1 homolog A 2 2
MIRT462251 LAMA4 laminin subunit alpha 4 2 2
MIRT462469 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT466656 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 6
MIRT466841 STX6 syntaxin 6 2 2
MIRT471403 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471517 PCGF3 polycomb group ring finger 3 2 2
MIRT471681 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT472858 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT474813 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 2 2
MIRT474931 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475814 HDGF heparin binding growth factor 2 2
MIRT480434 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480903 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT481478 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT484982 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485019 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485036 TMEM189 transmembrane protein 189 2 8
MIRT495074 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT496004 CD180 CD180 molecule 2 2
MIRT500675 TRIM37 tripartite motif containing 37 2 2
MIRT504544 ZNF417 zinc finger protein 417 2 6
MIRT506782 KLHL15 kelch like family member 15 2 6
MIRT507256 FGF2 fibroblast growth factor 2 2 6
MIRT507386 EN2 engrailed homeobox 2 2 2
MIRT512505 BTBD19 BTB domain containing 19 2 2
MIRT516903 CTSB cathepsin B 2 2
MIRT528124 PPP1R10 protein phosphatase 1 regulatory subunit 10 2 2
MIRT528874 ATF3 activating transcription factor 3 2 2
MIRT536091 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT541079 RLIM ring finger protein, LIM domain interacting 2 2
MIRT541099 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT545360 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT545831 ZNF367 zinc finger protein 367 2 4
MIRT547115 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT547312 NPTN neuroplastin 2 2
MIRT547959 HIGD1A HIG1 hypoxia inducible domain family member 1A 2 4
MIRT549943 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT550749 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT565145 TUBB2A tubulin beta 2A class IIa 2 2
MIRT571050 POLQ DNA polymerase theta 2 2
MIRT571361 ZNF45 zinc finger protein 45 2 2
MIRT610133 FOXI2 forkhead box I2 2 2
MIRT613145 DSE dermatan sulfate epimerase 2 2
MIRT613379 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT615752 C6 complement C6 2 2
MIRT616460 ADRA2B adrenoceptor alpha 2B 2 2
MIRT616719 FEM1B fem-1 homolog B 2 2
MIRT618312 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT631491 RASSF4 Ras association domain family member 4 2 2
MIRT643134 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT643482 DISC1 disrupted in schizophrenia 1 2 2
MIRT649715 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT653542 SLC38A7 solute carrier family 38 member 7 2 2
MIRT666307 SLC22A3 solute carrier family 22 member 3 2 2
MIRT692005 NAP1L4 nucleosome assembly protein 1 like 4 2 2
MIRT696838 ARL2BP ADP ribosylation factor like GTPase 2 binding protein 2 2
MIRT698204 TMEM248 transmembrane protein 248 2 2
MIRT703316 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT709376 FAM13A family with sequence similarity 13 member A 2 2
MIRT710112 MED23 mediator complex subunit 23 2 2
MIRT711975 HOMER2 homer scaffolding protein 2 2 2
MIRT712275 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT714108 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT719113 MAML1 mastermind like transcriptional coactivator 1 2 2
MIRT719727 SLC39A11 solute carrier family 39 member 11 2 2
MIRT720018 TFAP2C transcription factor AP-2 gamma 2 2
MIRT720358 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT720372 NUDT3 nudix hydrolase 3 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4291 Platinum-based doublet chemotherapy resistant High Lung Adenocarcinoma tissue
hsa-miR-4291 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-4291 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-4291 Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-4291 Radioactivity Iodine resistant High Papillary Thyroid Cancer tissue
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4291 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-4291 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4291 Platinum-based doublet chemotherapy resistant tissue (lung adenocarcinoma)
hsa-miR-4291 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-4291 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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