pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PAX6   
Synonyms AN, AN2, ASGD5, D11S812E, FVH1, MGDA, WAGR
Description paired box 6
Transcript NM_000280   
Other Transcripts NM_001127612 , NM_001604   
Expression
Putative miRNA Targets on PAX6
3'UTR of PAX6
(miRNA target sites are highlighted)
>PAX6|NM_000280|3'UTR
   1 AAAAAAAAAAAAAAAAAAAAAGGAAAGGAAATATTGTGTTAATTCAGTCAGTGACTATGGGGACACAACAGTTGAGCTTT
  81 CAGGAAAGAAAGAAAAATGGCTGTTAGAGCCGCTTCAGTTCTACAATTGTGTCCTGTATTGTACCACTGGGGAAGGAATG
 161 GACTTGAAACAAGGACCTTTGTATACAGAAGGCACGATATCAGTTGGAACAAATCTTCATTTTGGTATCCAAACTTTTAT
 241 TCATTTTGGTGTATTATTTGTAAATGGGCATTTGTATGTTATAATGAAAAAAAGAACAATGTAGACTGGATGGATGTTTG
 321 ATCTGTGTTGGTCATGAAGTTGTTTTTTTTTTTTTTAAAAAGAAAACCATGATCAACAAGCTTTGCCACGAATTTAAGAG
 401 TTTTATCAAGATATATCGAATACTTCTACCCATCTGTTCATAGTTTATGGACTGATGTTCCAAGTTTGTATCATTCCTTT
 481 GCATATAATTAAACCTGGAACAACATGCACTAGATTTATGTCAGAAATATCTGTTGGTTTTCCAAAGGTTGTTAACAGAT
 561 GAAGTTTATGTGCAAAAAAGGGTAAGATATAAATTCAAGGAAGAAAAAAAGTTGATAGCTAAAAGGTAGAGTGTGTCTTC
 641 GATATAATCCAATTTGTTTTATGTCAAAATGTAAGTATTTGTCTTCCCTAGAAATCCTCAGAATGATTTCTATAATAAAG
 721 TTAATTTCATTTATATTTGACAAGAATATAGATGTTTTATACACATTTTCATGCAATCATACGTTTCTTTTTTGGCCAGC
 801 AAAAGTTAATTGTTCTTAGATATAGTTGTATTACTGTTCACGGTCCAATCATTTTGTGCATCTAGAGTTCATTCCTAATC
 881 AATTAAAAGTGCTTGCAAGAGTTTTAAACTTAAGTGTTTTGAAGTTGTTCACAACTACATATCAAAATTAACCATTGTTG
 961 ATTGTAAAAAACCATGCCAAAGCCTTTGTATTTCCTTTATTATACAGTTTTCTTTTTAACCTTATAGTGTGGTGTTACAA
1041 ATTTTATTTCCATGTTAGATCAACATTCTAAACCAATGGTTACTTTCACACACACTCTGTTTTACATCCTGATGATCCTT
1121 AAAAAATAATCCTTATAGATACCATAAATCAAAAACGTGTTAGAAAAAAATTCCACTTACAGCAGGGTGTAGATCTGTGC
1201 CCATTTATACCCACAACATATATACAAAATGGTAACATTTCCCAGTTAGCCATTTAATTCTAAAGCTCAAAGTCTAGAAA
1281 TAATTTAAAAATGCAACAAGCGATTAGCTAGGAATTGTTTTTTGAATTAGGACTGGCATTTTCAATCTGGGCAGATTTCC
1361 ATTGTCAGCCTATTTCAACAATGATTTCACTGAAGTATATTCAAAAGTAGATTTCTTAAAGGAGACTTTCTGAAAGCTGT
1441 TGCCTTTTTCAAATAGGCCCTCTCCCTTTTCTGTCTCCCTCCCCTTTGCACAAGAGGCATCATTTCCCATTGAACCACTA
1521 CAGCTGTTCCCATTTGAATCTTGCTTTCTGTGCGGTTGTGGATGGTTGGAGGGTGGAGGGGGGATGTTGCATGTCAAGGA
1601 ATAATGAGCACAGACACATCAACAGACAACAACAAAGCAGACTGTGACTGGCCGGTGGGAATTAAAGGCCTTCAGTCATT
1681 GGCAGCTTAAGCCAAACATTCCCAAATCTATGAAGCAGGGCCCATTGTTGGTCAGTTGTTATTTGCAATGAAGCACAGTT
1761 CTGATCATGTTTAAAGTGGAGGCACGCAGGGCAGGAGTGCTTGAGCCCAAGCAAAGGATGGAAAAAAATAAGCCTTTGTT
1841 GGGTAAAAAAGGACTGTCTGAGACTTTCATTTGTTCTGTGCAACATATAAGTCAATACAGATAAGTCTTCCTCTGCAAAC
1921 TTCACTAAAAAGCCTGGGGGTTCTGGCAGTCTAGATTAAAATGCTTGCACATGCAGAAACCTCTGGGGACAAAGACACAC
2001 TTCCACTGAATTATACTCTGCTTTAAAAAAATCCCCAAAAGCAAATGATCAGAAATGTAGAAATTAATGGAAGGATTTAA
2081 ACATGACCTTCTCGTTCAATATCTACTGTTTTTTAGTTAAGGAATTACTTGTGAACAGATAATTGAGATTCATTGCTCCG
2161 GCATGAAATATACTAATAATTTTATTCCACCAGAGTTGCTGCACATTTGGAGACACCTTCCTAAGTTGCAGTTTTTGTAT
2241 GTGTGCATGTAGTTTTGTTCAGTGTCAGCCTGCACTGCACAGCAGCACATTTCTGCAGGGGAGTGAGCACACATACGCAC
2321 TGTTGGTACAATTGCCGGTGCAGACATTTCTACCTCCTGACATTTTGCAGCCTACATTCCCTGAGGGCTGTGTGCTGAGG
2401 GAACTGTCAGAGAAGGGCTATGTGGGAGTGCATGCCACAGCTGCTGGCTGGCTTACTTCTTCCTTCTCGCTGGCTGTAAT
2481 TTCCACCACGGTCAGGCAGCCAGTTCCGGCCCACGGTTCTGTTGTGTAGACAGCAGAGACTTTGGAGACCCGGATGTCGC
2561 ACGCCAGGTGCAAGAGGTGGGAATGGGAGAAAAGGAGTGACGTGGGAGCGGAGGGTCTGTATGTGTGCACTTGGGCACGT
2641 ATATGTGTGCTCTGAAGGTCAGGATTGCCAGGGCAAAGTAGCACAGTCTGGTATAGTCTGAAGAAGCGGCTGCTCAGCTG
2721 CAGAAGCCCTCTGGTCCGGCAGGATGGGAACGGCTGCCTTGCCTTCTGCCCACACCCTAGGGACATGAGCTGTCCTTCCA
2801 AACAGAGCTCCAGGCACTCTCTTGGGGACAGCATGGCAGGCTCTGTGTGGTAGCAGTGCCTGGGAGTTGGCCTTTTACTC
2881 ATTGTTGAAATAATTTTTGTTTATTATTTATTTAACGATACATATATTTATATATTTATCAATGGGGTATCTGCAGGGAT
2961 GTTTTGACACCATCTTCCAGGATGGAGATTATTTGTGAAGACTTCAGTAGAATCCCAGGACTAAACGTCTAAATTTTTTC
3041 TCCAAACTTGACTGACTTGGGAAAACCAGGTGAATAGAATAAGAGCTGAATGTTTTAAGTAATAAACGTTCAAACTGCTC
3121 TAAGTAAAAAAATGCATTTTACTGCAATGAATTTCTAGAATATTTTTCCCCCAAAGCTATGCCTCCTAACCCTTAAATGG
3201 TGAACAACTGGTTTCTTGCTACAGCTCACTGCCATTTCTTCTTACTATCATCACTAGGTTTCCTAAGATTCACTCATACA
3281 GTATTATTTGAAGATTCAGCTTTGTTCTGTGAATGTCATCTTAGGATTGTGTCTATATTCTTTTGCTTATTTCTTTTTAC
3361 TCTGGGCCTCTCATACTAGTAAGATTTTAAAAAGCCTTTTCTTCTCTGTATGTTTGGCTCACCAAGGCGAAATATATATT
3441 CTTCTCTTTTTCATTTCTCAAGAATAAACCTCATCTGCTTTTTTGTTTTTCTGTGTTTTGGCTTGGTACTGAATGACTCA
3521 ACTGCTCGGTTTTAAAGTTCAAAGTGTAAGTACTTAGGGTTAGTACTGCTTATTTCAATAATGTTGACGGTGACTATCTT
3601 TGGAAAGCAGTAACATGCTGTCTTAGAAATGACATTAATAATGGGCTTAAACAAATGAATAGGGGGGTCCCCCCACTCTC
3681 CTTTTGTATGCCTATGTGTGTCTGATTTGTTAAAAGATGGACAGGGAATTGATTGCAGAGTGTCGCTTCCTTCTAAAGTA
3761 GTTTTATTTTGTCTACTGTTAGTATTTAAAGATCCTGGAGGTGGACATAAGGAATAAATGGAAGAGAAAAGTAGATATTG
3841 TATGGTGGCTACTAAAAGGAAATTCAAAAAGTCTTAGAACCCGAGCACCTGAGCAAACTGCAGTAGTCAAAATATTTATC
3921 TCATGTTAAAGAAAGGCAAATCTAGTGTAAGAAATGAGTACCATATAGGGTTTTGAAGTTCATATACTAGAAACACTTAA
4001 AAGATATCATTTCAGATATTACGTTTGGCATTGTTCTTAAGTATTTATATCTTTGAGTCAAGCTGATAATTAAAAAAAAT
4081 CTGTTAATGGAGTGTATATTTCATAATGTATCAAAATGGTGTCTATACCTAAGGTAGCATTATTGAAGAGAGATATGTTT
4161 ATGTAGTAAGTTATTAACATAATGAGTAACAAATAATGTTTCCAGAAGAAAGGAAAACACATTTTCAGAGTGCGTTTTTA
4241 TCAGAGGAAGACAAAAATACACACCCCTCTCCAGTAGCTTATTTTTACAAAGCCGGCCCAGTGAATTAGAAAAACAAAGC
4321 ACTTGGATATGATTTTTGGAAAGCCCAGGTACACTTATTATTCAAAATGCACTTTTACTGAGTTTGAAAAGTTTCTTTTA
4401 TATTTAAAATAAGGGTTCAAATATGCATATTCAATTTTTATAGTAGTTATCTATTTGCAAAGCATATATTAACTAGTAAT
4481 TGGCTGTTAATTTTATAGACATGGTAGCCAGGGAAGTATATCAATGACCTATTAAGTATTTTGACAAGCAATTTACATAT
4561 CTGATGACCTCGTATCTCTTTTTCAGCAAGTCAAATGCTATGTAATTGTTCCATTGTGTGTTGTATAAAATGAATCAACA
4641 CGGTAAGAAAAAGGTTAGAGTTATTAAAATAATAAACTGACTAAAATACTCATTTGAATTTATTCAGAATGTTCATAATG
4721 CTTTCAAAGGACATAGCAGAGCTTTTGTGGAGTATCCGCACAACATTATTTATTATCTATGGACTAAATCAATTTTTTGA
4801 AGTTGCTTTAAAATTTAAAAGCACCTTTGCTTAATATAAAGCCCTTTAATTTTAACTGACAGATCAATTCTGAAACTTTA
4881 TTTTGAAAAGAAAATGGGGAAGAATCTGTGTCTTTAGAATTAAAAGAAATGAAAAAAATAAACCCGACATTCTAAAAAAA
4961 TAGAATAAGAAACCTGATTTTTAGTACTAATGAAATAGCGGGTGACAAAATAGTTGTCTTTTTGATTTTGATCACAAAAA
5041 ATAAACTGGTAGTGACAGGATATGATGGAGAGATTTGACATCCTGGCAAATCACTGTCATTGATTCAATTATTCTAATTC
5121 TGAATAAAAGCTGTATACAGTAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGA--AGUCGGAg 5'
            ||:| | |  ||||||| 
Target 5' agATTTCCATTGTCAGCCTa 3'
1353 - 1372 150.00 -14.90
2
miRNA  3' gguAGAAG--GAAGUCGGAg 5'
             | |||  : ||||||| 
Target 5' tttTGTTCAGTGTCAGCCTg 3'
2253 - 2272 145.00 -10.70
3
miRNA  3' gguagaaggAAGUCGGAg 5'
                   ||||||:| 
Target 5' atttgaagaTTCAGCTTt 3'
3286 - 3303 129.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
879183 90 ClinVar
304355 107 ClinVar
304354 184 ClinVar
304353 207 ClinVar
304352 226 ClinVar
877566 247 ClinVar
877565 272 ClinVar
304351 335 ClinVar
304350 356 ClinVar
304348 357 ClinVar
304349 357 ClinVar
304347 417 ClinVar
878545 626 ClinVar
304346 841 ClinVar
877523 842 ClinVar
304345 891 ClinVar
COSN32070444 1 COSMIC
COSN32070445 1 COSMIC
COSN32071234 1 COSMIC
COSN31532847 17 COSMIC
COSN30493333 27 COSMIC
COSN31568242 61 COSMIC
COSN30610557 84 COSMIC
COSN5907310 134 COSMIC
COSN28880815 161 COSMIC
COSN30512107 189 COSMIC
COSN32070443 197 COSMIC
COSN22089551 202 COSMIC
COSN32070442 273 COSMIC
COSN32070441 300 COSMIC
COSN8641507 309 COSMIC
COSN18922951 342 COSMIC
COSN20108125 343 COSMIC
COSN20787568 355 COSMIC
COSN7002716 357 COSMIC
COSN31593891 390 COSMIC
COSN156321 396 COSMIC
COSN31529628 418 COSMIC
COSN31565838 641 COSMIC
COSN31488070 688 COSMIC
COSN31515592 691 COSMIC
COSN23682194 719 COSMIC
COSN26554163 782 COSMIC
COSN8641506 841 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752539155 12 dbSNP
rs1173471919 19 dbSNP
rs1017857602 21 dbSNP
rs1315298089 22 dbSNP
rs1344943855 22 dbSNP
rs1352461141 22 dbSNP
rs1429278058 22 dbSNP
rs759391101 22 dbSNP
rs760883786 22 dbSNP
rs766383236 22 dbSNP
rs780753075 22 dbSNP
rs867642042 23 dbSNP
rs1280870793 24 dbSNP
rs1479145620 24 dbSNP
rs1008519093 25 dbSNP
rs890528652 26 dbSNP
rs765630322 27 dbSNP
rs1254035353 32 dbSNP
rs186495466 33 dbSNP
rs753270350 34 dbSNP
rs968027468 34 dbSNP
rs1279106599 35 dbSNP
rs1399262772 37 dbSNP
rs772347211 38 dbSNP
rs1376657101 41 dbSNP
rs1434620816 42 dbSNP
rs1310590420 46 dbSNP
rs763707989 47 dbSNP
rs1326658016 49 dbSNP
rs1287394557 50 dbSNP
rs1228617460 57 dbSNP
rs775315951 58 dbSNP
rs932102488 61 dbSNP
rs1300543211 64 dbSNP
rs1446487836 65 dbSNP
rs1451826259 66 dbSNP
rs781672782 68 dbSNP
rs1359050064 69 dbSNP
rs1303855898 72 dbSNP
rs577492950 85 dbSNP
rs759234423 86 dbSNP
rs1416459040 87 dbSNP
rs572377074 90 dbSNP
rs1158763323 92 dbSNP
rs1473031056 96 dbSNP
rs1356111899 98 dbSNP
rs201999673 104 dbSNP
rs765087371 105 dbSNP
rs886048201 107 dbSNP
rs1482889795 110 dbSNP
rs749305106 111 dbSNP
rs755533758 112 dbSNP
rs1037916086 114 dbSNP
rs941876736 118 dbSNP
rs375196435 124 dbSNP
rs747184562 126 dbSNP
rs905077670 128 dbSNP
rs1454245178 130 dbSNP
rs1309991764 131 dbSNP
rs1227179056 132 dbSNP
rs1379096200 133 dbSNP
rs754742074 134 dbSNP
rs780225831 138 dbSNP
rs913523296 148 dbSNP
rs558806590 149 dbSNP
rs1320254772 155 dbSNP
rs1457997750 160 dbSNP
rs1327602201 170 dbSNP
rs1352463196 173 dbSNP
rs886048200 184 dbSNP
rs758658941 187 dbSNP
rs750748406 191 dbSNP
rs928834789 192 dbSNP
rs1414622264 195 dbSNP
rs1183568201 196 dbSNP
rs886048199 207 dbSNP
rs1271801859 210 dbSNP
rs1341567241 211 dbSNP
rs539058643 213 dbSNP
rs779388577 219 dbSNP
rs1215300330 224 dbSNP
rs917273732 225 dbSNP
rs753595935 226 dbSNP
rs1220353536 229 dbSNP
rs1272348114 230 dbSNP
rs1456640396 234 dbSNP
rs1321864138 237 dbSNP
rs1215741930 242 dbSNP
rs980237683 243 dbSNP
rs1291379969 244 dbSNP
rs1468270124 247 dbSNP
rs568482434 248 dbSNP
rs1057129176 249 dbSNP
rs1297333464 250 dbSNP
rs754370657 260 dbSNP
rs1476022065 266 dbSNP
rs1364508324 268 dbSNP
rs1420798630 269 dbSNP
rs934715799 272 dbSNP
rs1457567976 276 dbSNP
rs1350588644 278 dbSNP
rs924735815 287 dbSNP
rs150518775 292 dbSNP
rs1427772939 294 dbSNP
rs1389406375 303 dbSNP
rs1188985014 306 dbSNP
rs752052976 307 dbSNP
rs968921493 314 dbSNP
rs1316088643 315 dbSNP
rs910786331 320 dbSNP
rs1273969330 323 dbSNP
rs961274511 329 dbSNP
rs1208492209 331 dbSNP
rs766518284 335 dbSNP
rs954349552 337 dbSNP
rs1448123481 338 dbSNP
rs1247986212 342 dbSNP
rs1457492416 342 dbSNP
rs1193053863 343 dbSNP
rs955360072 345 dbSNP
rs1475869810 347 dbSNP
rs1202325630 349 dbSNP
rs1165203198 351 dbSNP
rs774392481 356 dbSNP
rs1385349708 357 dbSNP
rs1456043490 357 dbSNP
rs200391530 357 dbSNP
rs774473337 357 dbSNP
rs553690261 362 dbSNP
rs1338520045 369 dbSNP
rs1424540247 389 dbSNP
rs1245031287 390 dbSNP
rs1355121057 398 dbSNP
rs996629679 400 dbSNP
rs1262902249 401 dbSNP
rs900620429 406 dbSNP
rs1205076652 414 dbSNP
rs993182510 415 dbSNP
rs55756603 417 dbSNP
rs867139112 418 dbSNP
rs1188105796 422 dbSNP
rs892037921 423 dbSNP
rs1421718536 432 dbSNP
rs1006460882 439 dbSNP
rs568060956 444 dbSNP
rs938966028 447 dbSNP
rs1354658511 448 dbSNP
rs928758910 452 dbSNP
rs1044580021 466 dbSNP
rs1156605061 467 dbSNP
rs546803677 468 dbSNP
rs534503925 476 dbSNP
rs1246154713 477 dbSNP
rs905066773 482 dbSNP
rs762915630 493 dbSNP
rs1294687458 501 dbSNP
rs1313607001 510 dbSNP
rs1401540194 521 dbSNP
rs1045369254 534 dbSNP
rs1227257715 535 dbSNP
rs919716628 540 dbSNP
rs1013484317 545 dbSNP
rs1307517253 554 dbSNP
rs1350731402 556 dbSNP
rs1365414620 564 dbSNP
rs1322114538 574 dbSNP
rs973693066 580 dbSNP
rs1279020064 581 dbSNP
rs1384904968 585 dbSNP
rs1399309462 586 dbSNP
rs1389745806 588 dbSNP
rs896417813 597 dbSNP
rs3026394 603 dbSNP
rs369801879 611 dbSNP
rs961058695 611 dbSNP
rs1358473804 617 dbSNP
rs1250874661 626 dbSNP
rs1459327282 629 dbSNP
rs908234787 640 dbSNP
rs181456283 641 dbSNP
rs1057034798 646 dbSNP
rs987081552 656 dbSNP
rs1166751427 657 dbSNP
rs570775936 662 dbSNP
rs1358669299 666 dbSNP
rs1320220988 678 dbSNP
rs924656139 680 dbSNP
rs768630698 686 dbSNP
rs750692692 694 dbSNP
rs1391069575 696 dbSNP
rs1397555392 712 dbSNP
rs1195550581 715 dbSNP
rs1043181347 717 dbSNP
rs1329767619 734 dbSNP
rs1450307937 739 dbSNP
rs1373582123 744 dbSNP
rs1235684278 746 dbSNP
rs1301103561 749 dbSNP
rs947538847 754 dbSNP
rs996729268 762 dbSNP
rs368683181 763 dbSNP
rs1210967882 770 dbSNP
rs1251358150 773 dbSNP
rs1480131215 774 dbSNP
rs1196327592 778 dbSNP
rs910742968 782 dbSNP
rs189275679 783 dbSNP
rs986311917 787 dbSNP
rs763448163 790 dbSNP
rs891780172 794 dbSNP
rs1053129981 796 dbSNP
rs1430226059 799 dbSNP
rs1490973453 810 dbSNP
rs1373677445 812 dbSNP
rs923520391 813 dbSNP
rs1465321307 815 dbSNP
rs1003505482 819 dbSNP
rs971689314 838 dbSNP
rs530931929 841 dbSNP
rs115045926 842 dbSNP
rs1366172304 845 dbSNP
rs1384392021 857 dbSNP
rs1401023444 862 dbSNP
rs1295718000 871 dbSNP
rs185996251 877 dbSNP
rs1216429704 879 dbSNP
rs1274588839 883 dbSNP
rs1335072631 887 dbSNP
rs530259403 891 dbSNP
rs559569624 896 dbSNP
rs1330314272 901 dbSNP
rs1486824638 908 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BACD1
Disease MIMAT0019034
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020024. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_000280 | 3UTR | UGCACUGCACAGCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1020024
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BACD1 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000419022.1 | 3UTR | GCCUAUUUCAACAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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