pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol VAMP1   
Synonyms SPAX1, SYB1, VAMP-1
Description vesicle associated membrane protein 1
Transcript NM_199245   
Other Transcripts NM_016830 , NM_014231   
Expression
Putative miRNA Targets on VAMP1
3'UTR of VAMP1
(miRNA target sites are highlighted)
>VAMP1|NM_199245|3'UTR
   1 AGTTGCTGGTGGGGTGAAGAGGTGGGAAGGTCCTGGAGTCTTCTCCCTGCCTGCCTGCCTGCCTGGGGAGTGGGGCTGCT
  81 CTGACTGAGGTATGGAGACCGCTGCTATGGGATCGTCACCTGGTTCGGGACGGGGGAAGGGCAGAGACAAGGGATTTCTT
 161 TGATGGACAAGCCTTCCCCCTGCAACGCATTGCAGGGAGATGGCGCCTCCTGTTCTGAGGAAGTGGGGCTATGCTGTGTG
 241 TCACTGGCTTGGGTTGGAGGGAGACCATGGGGATGGGGCACTTAACAATGGAGAGACCTGAATGTCTGGTAACTTGGTGT
 321 AATTCACCCTCTTGTTTTCTCCTGTCTCTTTCTCTTTTCCGTCTGGGACTTCCTGATTCCTGTGTCCAGTCTACTTTTTT
 401 ACTTGAGAATGTACCACCCCTTCCCTGTTGTCCATTGCCATCCACATTCATGTCCTCTGCCCTCTGTTTGCTCTCTCAAC
 481 ACACTTCCCCACCCACCGTCCTCCATTCCAGCCCAGGCTTCTCCATCACCCATTCCTCCTTTTTCGTTGCGTTCATTTGC
 561 ACTCTGTCCCTCAACACTAGAAATGCTGCTCGTGGCACAATCTAAGTCATTACCCGAAGAGCAACAGCTGGCGCCTCCTC
 641 CCTGCCTGCTTTTTCTGTACTCTCAAGTTCCCCCAAAGCCCCAAAGAGTTGGAGGCCAAGGGAAGGGGCAGGGAGGGGAG
 721 TGGCTGAGGCGAAGTACCCATGAAGCTGCCCAGACTTGGGAGGAGAAGAGTATCGGTGCCCATGGTGACTTCTAGAAAAC
 801 CTGGCCACTGGTAGGAGCTAGGGAGGGGCTGGGAAGATGGCAGCTCACTCAGTACTGCCTGGTCATGTGGAGCTTTCCTT
 881 CCTGGACCAGGCCTGAAGAGGGTCCTGGGGGTGGACCAAAGTCCAACTTGGTTTCAGTGCAGTACCCTTTTCGAAAGTAA
 961 AAACTTGTTTTTTGTAGTTATTTCTAATCTGTTCGTCCAGGATTTTCCGTGTCTTTGGGGATCTTACAACTTTACTTTGT
1041 TCTCCAGAGGCCTGGAGAACACTTAGGGATTGTGAAAATAGCAGGACTTGTTTCCATCCTAGAAGCAGTCCCATGTGCTT
1121 CTAGCTGGAAGGAGCTTTCTCTTCTTTACATTTTCTACAGCATTCTGTATGAGGGCACCAAATAAATCCATCTAGCTGGT
1201 AGTTTTATCTAGCCAAATAATTTAACCTAGCTCCCAGTTAATTGTTGGCATAAAGAGAGAGATTGCCTGTTAGTTATAGA
1281 GAAACAGTGAGTCAAGTGCTTAATTTGAAAGTAACAAGCTCAGAGGAAGCCACTCCTTGCCCTCGTTAAAGAGGGTCCTG
1361 TTCCTCTCTTCCTGTTGATGAAGGAGCGTGAGGGTGTTAGCAGTGTGAGATCTTTGGACACCCATGGAATCCTTTCCTCC
1441 ACACCACCCGTGCACTTGCCAAAGACAGGGATGAGGCAAGTGGTTCTTCCTGGGGCCCGGCCGATCCTCAGGATGCAGAG
1521 AAGTCATGTAGACCCACCAGCCCCACCTTGGGGGGAGGCGTGCCAGCCTGTGTCAGGTGTGCTTGTGTATTGCTGTGCTG
1601 TCATGGGGCCCTCTCCTTGAGAGCCGCCTCTCTGTTCTTCCTGTAGTATATTCCCCTTTGAACCACCCTTTCCTGTCTGA
1681 ATTCTACTTTGCCTCCTTTCTCTTCCTCCTCTTTGCATGGTTTGTGTGTATAGACAGTGGAACCTGAGGATGGGATCTGC
1761 TCAGCCTATCTTCGGGGCAATTGCTGAGCTTCAGGATGGGCTATTAATGTGGGATAAGCCCAGGTGCAAGGGGAGGAGGG
1841 CAGGCTGGGAACAGAGCGGAGAATGCCCATGGCCCTTTATTCCTTCTTCCCTCGGTCCACGAACAGGAAGAGGCTGAGGC
1921 CATGCTGGGCAGGGTCTGGATGCCCACTTTCCATGCAGCAGCATTTCATTGCTCAAAACCATCCTTCCTTTCCTTTCGCC
2001 CTTGTTTCCCACATTCCCTTCGTCCTGCCCAAGGGCGGGACTGAAGAGCTGGAAGAAAGCAGTCAGTACCCTCCCAACGG
2081 CCCCCCTCGAAGGTCTCCACTCTCCTCTGGGCTCCTCCTTGCCTAATGCAGGGGGTCACCGCTGGAGAAGAACCACCACT
2161 GTCCTCGATGTGTCCCAAGCCTGGAGCGAATCCGTCCTCTTGGCTCTCCCAGCCCTATCACAGGAATCATTCCTGGGTTT
2241 CTGTCCCTCTGAGGCTCACCAGGTGTAGTTGGCCTTGTTCTTTGGGGGTATTAGCCCTTCTACTTTCTTTCTCACCCACC
2321 CTGTACCCTCTTCTGTGTGTCTCTGCTATCCCCCTTTCCTCCCACCACCCATGTGCATGAGCAAATGTGCAACAAAACCC
2401 TGGGACTTTGCAGTCAAATGAAGCTGAGCTTCCCACATCCCGTTCTTCGGTTTGCCATGAGACGATGTGGGGTTTCCACT
2481 GTGTGTCTGTCATCACCTCTTTGTCTTTTTTTCCTAACCCTGATCTCATACTTGTATAGAGTAATAACAACAGTTGTACT
2561 TCCACCAAAGGCATGTGGCATATTTACCAATGTCATGTATTCTGAACAAAGGCAAAAAATACAAATTCCTACCATTAAAA
2641 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGAAGUCGGAg 5'
            |||| |  ||||||| 
Target 5' ggATCTGC--TCAGCCTa 3'
1753 - 1768 152.00 -12.80
2
miRNA  3' gguagaaggaaGUCGGAg 5'
                     |||||| 
Target 5' gggaggcgtgcCAGCCTg 3'
1553 - 1570 120.00 -7.50
3
miRNA  3' gguAGAAGGAAGUCGGag 5'
             |||||| ||:|:|  
Target 5' cctTCTTCCCTCGGTCca 3'
1882 - 1899 115.00 -17.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
448851 2036 ClinVar
COSN30533542 4 COSMIC
COSN30535020 7 COSMIC
COSN30479265 9 COSMIC
COSN23013699 10 COSMIC
COSN2534509 46 COSMIC
COSN27004518 50 COSMIC
COSN9567965 78 COSMIC
COSN30146051 83 COSMIC
COSN25706107 94 COSMIC
COSN31612915 105 COSMIC
COSN30143998 127 COSMIC
COSN27004519 131 COSMIC
COSN27004517 132 COSMIC
COSN13412743 158 COSMIC
COSN31508273 178 COSMIC
COSN19640368 186 COSMIC
COSN30143650 232 COSMIC
COSN28743113 326 COSMIC
COSN8586551 351 COSMIC
COSN30135747 361 COSMIC
COSN30533367 372 COSMIC
COSN31548421 407 COSMIC
COSN26641060 439 COSMIC
COSN26548976 445 COSMIC
COSN30132881 545 COSMIC
COSN31564882 591 COSMIC
COSN21020232 615 COSMIC
COSN31543179 633 COSMIC
COSN26637695 670 COSMIC
COSN31480330 691 COSMIC
COSN24381476 774 COSMIC
COSN28728274 793 COSMIC
COSN25086085 816 COSMIC
COSN30701395 844 COSMIC
COSN1150865 849 COSMIC
COSN31297414 896 COSMIC
COSN5186716 952 COSMIC
COSN24872556 953 COSMIC
COSN19665693 981 COSMIC
COSN30701327 1065 COSMIC
COSN25302432 1251 COSMIC
COSN202489 1449 COSMIC
COSN9753890 1524 COSMIC
COSN31560499 1773 COSMIC
COSN31493116 1781 COSMIC
COSN5325882 1816 COSMIC
COSN31594282 1842 COSMIC
COSN20345305 1851 COSMIC
COSN26508776 1988 COSMIC
COSN26732168 1994 COSMIC
COSN13412726 1997 COSMIC
COSN30512177 2010 COSMIC
COSN26441663 2036 COSMIC
COSN30505861 2078 COSMIC
COSN22102962 2117 COSMIC
COSN28866422 2167 COSMIC
COSN31544516 2170 COSMIC
COSN22061404 2187 COSMIC
COSN20783780 2249 COSMIC
COSN1580928 2536 COSMIC
COSN21510679 2584 COSMIC
COSN28858956 2632 COSMIC
rs12964 1851 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs181120359 6 dbSNP
rs1428658709 9 dbSNP
rs1418099689 10 dbSNP
rs749347812 11 dbSNP
rs777762832 12 dbSNP
rs753172231 14 dbSNP
rs761483184 19 dbSNP
rs767853659 20 dbSNP
rs1253358517 21 dbSNP
rs1205415365 22 dbSNP
rs755346217 27 dbSNP
rs751974920 30 dbSNP
rs1237166842 32 dbSNP
rs1372420956 33 dbSNP
rs764868962 35 dbSNP
rs761497818 43 dbSNP
rs1379560336 51 dbSNP
rs1048103146 55 dbSNP
rs1312239254 63 dbSNP
rs1232127274 65 dbSNP
rs1416121636 66 dbSNP
rs993116216 66 dbSNP
rs1164043413 69 dbSNP
rs898947421 74 dbSNP
rs1257345923 85 dbSNP
rs1472614443 88 dbSNP
rs1479653086 91 dbSNP
rs1192841007 92 dbSNP
rs1268208309 94 dbSNP
rs560356538 100 dbSNP
rs1180933019 101 dbSNP
rs560343278 104 dbSNP
rs1197576508 106 dbSNP
rs941539447 107 dbSNP
rs540511594 114 dbSNP
rs1170331169 115 dbSNP
rs916721295 119 dbSNP
rs1459941970 121 dbSNP
rs915544348 122 dbSNP
rs540739007 126 dbSNP
rs772650835 127 dbSNP
rs1403740680 130 dbSNP
rs574629519 131 dbSNP
rs71584833 132 dbSNP
rs928201341 134 dbSNP
rs978315593 142 dbSNP
rs558449162 148 dbSNP
rs1223736354 157 dbSNP
rs771249067 160 dbSNP
rs761752803 161 dbSNP
rs1220278734 167 dbSNP
rs989534295 172 dbSNP
rs1022408832 173 dbSNP
rs1417864088 176 dbSNP
rs1425881290 180 dbSNP
rs1166135041 184 dbSNP
rs1034969 186 dbSNP
rs1009142354 187 dbSNP
rs1300813805 189 dbSNP
rs954032398 193 dbSNP
rs1400284126 201 dbSNP
rs1269202438 204 dbSNP
rs1359648236 206 dbSNP
rs768422020 207 dbSNP
rs575177840 222 dbSNP
rs1313363295 223 dbSNP
rs1358561292 228 dbSNP
rs998181915 236 dbSNP
rs575607494 244 dbSNP
rs1351657215 246 dbSNP
rs1324337661 247 dbSNP
rs369568272 251 dbSNP
rs1488640128 255 dbSNP
rs1215374395 257 dbSNP
rs867395092 259 dbSNP
rs1240523747 267 dbSNP
rs756331634 275 dbSNP
rs1026175019 277 dbSNP
rs555885574 280 dbSNP
rs1443385644 281 dbSNP
rs1363950896 284 dbSNP
rs768731003 286 dbSNP
rs535998857 288 dbSNP
rs1037342597 289 dbSNP
rs2534717 293 dbSNP
rs1419736491 294 dbSNP
rs888238380 298 dbSNP
rs781268500 304 dbSNP
rs1012629960 309 dbSNP
rs560860511 317 dbSNP
rs74056957 325 dbSNP
rs2534716 326 dbSNP
rs386759935 327 dbSNP
rs939505205 328 dbSNP
rs1381751777 331 dbSNP
rs1243749725 333 dbSNP
rs1311315110 334 dbSNP
rs371057949 339 dbSNP
rs201282335 340 dbSNP
rs1223234220 341 dbSNP
rs1282425242 348 dbSNP
rs1353446929 357 dbSNP
rs1167645319 358 dbSNP
rs779195460 359 dbSNP
rs760621733 360 dbSNP
rs145237172 361 dbSNP
rs928253337 363 dbSNP
rs1452355892 371 dbSNP
rs759392947 374 dbSNP
rs774327813 378 dbSNP
rs1480399988 384 dbSNP
rs1231372385 385 dbSNP
rs1213158610 388 dbSNP
rs202093198 397 dbSNP
rs749492649 400 dbSNP
rs1232673532 402 dbSNP
rs1319113694 406 dbSNP
rs1308109020 409 dbSNP
rs777865936 413 dbSNP
rs769766199 414 dbSNP
rs1296062499 417 dbSNP
rs748627588 423 dbSNP
rs1375459075 424 dbSNP
rs915375675 427 dbSNP
rs1432741462 431 dbSNP
rs1365342925 432 dbSNP
rs1159619929 435 dbSNP
rs1418253621 438 dbSNP
rs1406140660 442 dbSNP
rs1450125408 445 dbSNP
rs943503642 446 dbSNP
rs750087343 448 dbSNP
rs1486049001 449 dbSNP
rs954147625 454 dbSNP
rs1256820076 461 dbSNP
rs1209400349 462 dbSNP
rs1365868805 464 dbSNP
rs1487109275 468 dbSNP
rs757470732 471 dbSNP
rs1238833239 473 dbSNP
rs1315491049 474 dbSNP
rs755550229 477 dbSNP
rs568559575 482 dbSNP
rs780448354 484 dbSNP
rs1480363929 487 dbSNP
rs756858290 496 dbSNP
rs987350219 497 dbSNP
rs753466399 498 dbSNP
rs1015529710 505 dbSNP
rs1289368257 518 dbSNP
rs1180272537 521 dbSNP
rs763594674 524 dbSNP
rs1259295891 532 dbSNP
rs1478707639 533 dbSNP
rs760117522 535 dbSNP
rs752310304 536 dbSNP
rs1026816145 543 dbSNP
rs767529902 545 dbSNP
rs561376892 546 dbSNP
rs894259729 549 dbSNP
rs770880125 550 dbSNP
rs1056780775 551 dbSNP
rs114253457 554 dbSNP
rs1485099016 558 dbSNP
rs773317031 561 dbSNP
rs1282902024 564 dbSNP
rs1343803681 565 dbSNP
rs1215199873 568 dbSNP
rs1220692976 568 dbSNP
rs1279300975 573 dbSNP
rs1012989910 574 dbSNP
rs770109060 575 dbSNP
rs528990207 583 dbSNP
rs902811071 588 dbSNP
rs1262225427 591 dbSNP
rs748168937 591 dbSNP
rs1327663504 592 dbSNP
rs1221614049 594 dbSNP
rs1042649225 595 dbSNP
rs1381515334 596 dbSNP
rs1386229193 601 dbSNP
rs1267550531 602 dbSNP
rs1327617830 604 dbSNP
rs1461750509 611 dbSNP
rs141124646 615 dbSNP
rs546853015 616 dbSNP
rs1373468217 620 dbSNP
rs1474935308 627 dbSNP
rs1166113551 630 dbSNP
rs915491827 632 dbSNP
rs546342393 633 dbSNP
rs1463601189 635 dbSNP
rs932792362 637 dbSNP
rs921362041 640 dbSNP
rs977217362 641 dbSNP
rs1193136450 642 dbSNP
rs1427207851 644 dbSNP
rs1363776817 654 dbSNP
rs769134568 660 dbSNP
rs1194694113 662 dbSNP
rs1402136094 663 dbSNP
rs1387617332 670 dbSNP
rs533578309 673 dbSNP
rs965409091 682 dbSNP
rs1335064170 683 dbSNP
rs1016046235 684 dbSNP
rs1272213784 688 dbSNP
rs71584834 702 dbSNP
rs1340870692 703 dbSNP
rs749431146 703 dbSNP
rs894058113 704 dbSNP
rs780360293 706 dbSNP
rs1246043779 712 dbSNP
rs1226637660 715 dbSNP
rs1053823293 717 dbSNP
rs1363004389 725 dbSNP
rs1179186106 726 dbSNP
rs763736645 730 dbSNP
rs758768912 731 dbSNP
rs1441454586 738 dbSNP
rs1369963794 741 dbSNP
rs544926462 744 dbSNP
rs1192055966 747 dbSNP
rs1261942236 749 dbSNP
rs1321831967 757 dbSNP
rs567396188 762 dbSNP
rs1397329575 764 dbSNP
rs778083252 766 dbSNP
rs1427864327 769 dbSNP
rs1397501838 770 dbSNP
rs1201592961 772 dbSNP
rs575543466 774 dbSNP
rs753475010 775 dbSNP
rs1251455477 776 dbSNP
rs1196347473 778 dbSNP
rs1439147729 779 dbSNP
rs1250772649 781 dbSNP
rs562091139 782 dbSNP
rs987936510 783 dbSNP
rs1336622313 786 dbSNP
rs777278836 789 dbSNP
rs1452595403 796 dbSNP
rs919054192 800 dbSNP
rs1234862121 801 dbSNP
rs1337556905 821 dbSNP
rs369954589 825 dbSNP
rs1003001207 828 dbSNP
rs143060738 846 dbSNP
rs1041812985 848 dbSNP
rs991196680 858 dbSNP
rs573338895 862 dbSNP
rs1035459000 863 dbSNP
rs1452431273 866 dbSNP
rs1328425506 867 dbSNP
rs1408139272 878 dbSNP
rs1003004574 879 dbSNP
rs894090650 881 dbSNP
rs1160005798 883 dbSNP
rs760065469 885 dbSNP
rs1377289995 889 dbSNP
rs2534715 896 dbSNP
rs1434603043 904 dbSNP
rs932823612 905 dbSNP
rs371394320 911 dbSNP
rs921392917 915 dbSNP
rs1160707584 926 dbSNP
rs754924386 940 dbSNP
rs1364085048 946 dbSNP
rs1021170508 948 dbSNP
rs751544496 952 dbSNP
rs530530643 953 dbSNP
rs71584835 958 dbSNP
rs1392479743 960 dbSNP
rs1334639269 964 dbSNP
rs894090833 964 dbSNP
rs762638803 973 dbSNP
rs1485331581 980 dbSNP
rs2534714 981 dbSNP
rs148986639 994 dbSNP
rs189529520 995 dbSNP
rs1279199111 1008 dbSNP
rs74056956 1009 dbSNP
rs568498243 1014 dbSNP
rs1201306468 1020 dbSNP
rs1403126959 1029 dbSNP
rs1430173805 1031 dbSNP
rs748397138 1033 dbSNP
rs1462037843 1039 dbSNP
rs781221614 1044 dbSNP
rs1372067146 1055 dbSNP
rs1402897720 1057 dbSNP
rs1462992900 1061 dbSNP
rs958541896 1063 dbSNP
rs1036182994 1065 dbSNP
rs1395184594 1067 dbSNP
rs755103226 1079 dbSNP
rs746956225 1083 dbSNP
rs1425236657 1096 dbSNP
rs1284823380 1098 dbSNP
rs941852462 1107 dbSNP
rs1222506604 1112 dbSNP
rs1414185826 1113 dbSNP
rs560722947 1114 dbSNP
rs1281198425 1121 dbSNP
rs1182788172 1133 dbSNP
rs1205169549 1144 dbSNP
rs909152925 1146 dbSNP
rs1479704448 1147 dbSNP
rs114509703 1149 dbSNP
rs1269695639 1157 dbSNP
rs958407885 1160 dbSNP
rs865953945 1161 dbSNP
rs928248701 1171 dbSNP
rs1480348736 1175 dbSNP
rs981100486 1177 dbSNP
rs11538646 1190 dbSNP
rs1429441852 1191 dbSNP
rs1247235124 1199 dbSNP
rs185066094 1213 dbSNP
rs1371789158 1215 dbSNP
rs1314749333 1219 dbSNP
rs540456464 1226 dbSNP
rs1020017896 1227 dbSNP
rs1403995074 1233 dbSNP
rs1300853626 1247 dbSNP
rs770855597 1257 dbSNP
rs967151923 1261 dbSNP
rs1404018768 1266 dbSNP
rs1310624518 1273 dbSNP
rs1011259406 1277 dbSNP
rs542768848 1277 dbSNP
rs1009762039 1286 dbSNP
rs1248066620 1288 dbSNP
rs879553472 1291 dbSNP
rs958168876 1293 dbSNP
rs1220578166 1295 dbSNP
rs1265548462 1296 dbSNP
rs1486406514 1296 dbSNP
rs1186228494 1303 dbSNP
rs1032606990 1312 dbSNP
rs779925949 1313 dbSNP
rs1164740018 1323 dbSNP
rs1385348138 1328 dbSNP
rs1423396028 1341 dbSNP
rs892783053 1344 dbSNP
rs1008190054 1345 dbSNP
rs1054043065 1360 dbSNP
rs566185897 1364 dbSNP
rs1288133751 1369 dbSNP
rs900082447 1371 dbSNP
rs1052234204 1374 dbSNP
rs1358846460 1378 dbSNP
rs1243798660 1385 dbSNP
rs997459159 1387 dbSNP
rs1041634177 1395 dbSNP
rs1215299977 1404 dbSNP
rs1240758389 1412 dbSNP
rs1459082609 1414 dbSNP
rs1365810730 1416 dbSNP
rs944207769 1419 dbSNP
rs908634595 1420 dbSNP
rs1162626910 1421 dbSNP
rs1047121658 1424 dbSNP
rs1243006196 1427 dbSNP
rs941883742 1434 dbSNP
rs1179148160 1436 dbSNP
rs1409516240 1439 dbSNP
rs1400983334 1441 dbSNP
rs931318184 1442 dbSNP
rs1418484436 1450 dbSNP
rs2534713 1455 dbSNP
rs1055720282 1459 dbSNP
rs937293719 1463 dbSNP
rs180779395 1465 dbSNP
rs778873075 1467 dbSNP
rs1281394418 1468 dbSNP
rs1488891937 1472 dbSNP
rs13842 1481 dbSNP
rs1326114518 1483 dbSNP
rs753592386 1490 dbSNP
rs2534712 1493 dbSNP
rs967207383 1494 dbSNP
rs531264176 1498 dbSNP
rs1234156853 1499 dbSNP
rs1470167177 1502 dbSNP
rs752254884 1503 dbSNP
rs766734708 1509 dbSNP
rs989869090 1512 dbSNP
rs957034159 1516 dbSNP
rs958238996 1523 dbSNP
rs1028702592 1536 dbSNP
rs995824968 1543 dbSNP
rs1481299025 1544 dbSNP
rs1176978366 1545 dbSNP
rs900114007 1548 dbSNP
rs1041272254 1551 dbSNP
rs1355208058 1555 dbSNP
rs562381997 1556 dbSNP
rs1032963451 1559 dbSNP
rs71584836 1560 dbSNP
rs1347688859 1564 dbSNP
rs1224339010 1566 dbSNP
rs1283101654 1570 dbSNP
rs887245786 1579 dbSNP
rs184765010 1582 dbSNP
rs953786916 1583 dbSNP
rs773522003 1590 dbSNP
rs1345654824 1593 dbSNP
rs1302145395 1597 dbSNP
rs1274270487 1602 dbSNP
rs1030522170 1616 dbSNP
rs1203127745 1625 dbSNP
rs559843986 1626 dbSNP
rs997493309 1628 dbSNP
rs1490755764 1631 dbSNP
rs1199654564 1636 dbSNP
rs931434182 1641 dbSNP
rs1422409553 1686 dbSNP
rs770179957 1688 dbSNP
rs546318440 1698 dbSNP
rs1428374234 1705 dbSNP
rs920006253 1706 dbSNP
rs1476890248 1709 dbSNP
rs1450333258 1712 dbSNP
rs374737641 1723 dbSNP
rs1055744050 1724 dbSNP
rs1420054194 1729 dbSNP
rs1409293318 1733 dbSNP
rs897804422 1734 dbSNP
rs1367501342 1735 dbSNP
rs1362197699 1743 dbSNP
rs1405826691 1746 dbSNP
rs1158956255 1762 dbSNP
rs866729262 1766 dbSNP
rs1452923945 1767 dbSNP
rs762004559 1768 dbSNP
rs1229999588 1770 dbSNP
rs776900454 1773 dbSNP
rs75602368 1774 dbSNP
rs147923947 1776 dbSNP
rs1360923858 1777 dbSNP
rs1222798218 1780 dbSNP
rs989975345 1791 dbSNP
rs957132221 1792 dbSNP
rs1267661755 1800 dbSNP
rs1449654992 1816 dbSNP
rs575169727 1818 dbSNP
rs116839028 1820 dbSNP
rs1045653889 1826 dbSNP
rs1287137823 1833 dbSNP
rs566173751 1850 dbSNP
rs12964 1851 dbSNP
rs768756830 1857 dbSNP
rs747450658 1858 dbSNP
rs1414225553 1865 dbSNP
rs1357972911 1869 dbSNP
rs775992685 1870 dbSNP
rs1401711098 1871 dbSNP
rs146913351 1872 dbSNP
rs746214938 1873 dbSNP
rs1471376511 1880 dbSNP
rs1419542591 1882 dbSNP
rs1188094678 1889 dbSNP
rs935784685 1890 dbSNP
rs910962078 1891 dbSNP
rs192577738 1893 dbSNP
rs1025804894 1894 dbSNP
rs1206503158 1895 dbSNP
rs767625629 1900 dbSNP
rs570943781 1901 dbSNP
rs1446174834 1913 dbSNP
rs1207088040 1914 dbSNP
rs1337291025 1918 dbSNP
rs1294106827 1921 dbSNP
rs780781733 1925 dbSNP
rs1377050109 1927 dbSNP
rs754547022 1928 dbSNP
rs1432027319 1929 dbSNP
rs1326231079 1930 dbSNP
rs1319020624 1931 dbSNP
rs1463315183 1937 dbSNP
rs1396308286 1940 dbSNP
rs1165175507 1942 dbSNP
rs751170514 1943 dbSNP
rs898612318 1944 dbSNP
rs1410897346 1946 dbSNP
rs953549515 1950 dbSNP
rs766411461 1954 dbSNP
rs551122030 1956 dbSNP
rs1247322084 1957 dbSNP
rs531152604 1961 dbSNP
rs937356151 1976 dbSNP
rs373313488 1984 dbSNP
rs1469650850 1987 dbSNP
rs907161284 1988 dbSNP
rs1274105893 1992 dbSNP
rs976272980 1993 dbSNP
rs1045452 1994 dbSNP
rs1320007573 1995 dbSNP
rs761903666 1997 dbSNP
rs548909077 1998 dbSNP
rs1339348572 1999 dbSNP
rs764104095 2002 dbSNP
rs1443644208 2004 dbSNP
rs760733176 2008 dbSNP
rs374739112 2011 dbSNP
rs528485399 2012 dbSNP
rs1347637205 2013 dbSNP
rs1171966219 2016 dbSNP
rs772428179 2017 dbSNP
rs1389552528 2021 dbSNP
rs1006213055 2022 dbSNP
rs745832349 2025 dbSNP
rs756785762 2028 dbSNP
rs746408132 2029 dbSNP
rs774537885 2032 dbSNP
rs542608112 2035 dbSNP
rs71584837 2036 dbSNP
rs747743898 2037 dbSNP
rs1468398435 2038 dbSNP
rs1341524533 2040 dbSNP
rs1273121739 2042 dbSNP
rs1264769503 2046 dbSNP
rs921698862 2048 dbSNP
rs974452309 2052 dbSNP
rs1349086588 2054 dbSNP
rs1303068429 2055 dbSNP
rs1217813423 2059 dbSNP
rs1254219723 2060 dbSNP
rs1420904952 2061 dbSNP
rs780974310 2062 dbSNP
rs369221825 2066 dbSNP
rs1484097188 2069 dbSNP
rs1363370190 2070 dbSNP
rs1442377866 2077 dbSNP
rs200887784 2078 dbSNP
rs532602716 2079 dbSNP
rs1436464848 2080 dbSNP
rs1395485327 2081 dbSNP
rs1175138338 2082 dbSNP
rs1431222822 2085 dbSNP
rs1407270606 2086 dbSNP
rs1410508292 2087 dbSNP
rs1469774628 2087 dbSNP
rs758222790 2088 dbSNP
rs1482772249 2089 dbSNP
rs1249659807 2092 dbSNP
rs142636658 2093 dbSNP
rs891709744 2097 dbSNP
rs1054152256 2102 dbSNP
rs1226178252 2105 dbSNP
rs935662681 2110 dbSNP
rs1335958248 2111 dbSNP
rs951688548 2116 dbSNP
rs1323955336 2120 dbSNP
rs1453235839 2125 dbSNP
rs910981042 2127 dbSNP
rs1481659194 2139 dbSNP
rs543954369 2140 dbSNP
rs1196521920 2141 dbSNP
rs1249892875 2148 dbSNP
rs1025840896 2150 dbSNP
rs995647366 2151 dbSNP
rs898646287 2166 dbSNP
rs536497006 2167 dbSNP
rs555231004 2170 dbSNP
rs541765403 2171 dbSNP
rs1375218330 2176 dbSNP
rs923403191 2182 dbSNP
rs1422435078 2186 dbSNP
rs1467232138 2188 dbSNP
rs1369382652 2191 dbSNP
rs572486499 2193 dbSNP
rs1001593270 2194 dbSNP
rs962302460 2197 dbSNP
rs907273750 2203 dbSNP
rs755802125 2204 dbSNP
rs1184630602 2213 dbSNP
rs1309242803 2214 dbSNP
rs1228036768 2218 dbSNP
rs1461207122 2221 dbSNP
rs1250869361 2226 dbSNP
rs1340087996 2237 dbSNP
rs552969525 2243 dbSNP
rs1269802028 2246 dbSNP
rs985217638 2252 dbSNP
rs1201139029 2255 dbSNP
rs1439038885 2264 dbSNP
rs952054507 2265 dbSNP
rs946025550 2282 dbSNP
rs1034860138 2288 dbSNP
rs891729369 2295 dbSNP
rs1337073968 2302 dbSNP
rs149985900 2316 dbSNP
rs935821174 2317 dbSNP
rs1246452320 2319 dbSNP
rs117836679 2326 dbSNP
rs117358859 2327 dbSNP
rs1448954456 2330 dbSNP
rs944509446 2333 dbSNP
rs7390 2343 dbSNP
rs1363135674 2347 dbSNP
rs1248181932 2348 dbSNP
rs1292584842 2349 dbSNP
rs1408389914 2359 dbSNP
rs1393157686 2361 dbSNP
rs983169023 2363 dbSNP
rs1219624323 2367 dbSNP
rs1164544138 2371 dbSNP
rs950407768 2372 dbSNP
rs115526614 2373 dbSNP
rs1049946830 2376 dbSNP
rs748664928 2395 dbSNP
rs548896687 2397 dbSNP
rs962860014 2398 dbSNP
rs139235612 2400 dbSNP
rs922350316 2409 dbSNP
rs1385285791 2415 dbSNP
rs373183162 2428 dbSNP
rs1040546641 2432 dbSNP
rs1162212493 2434 dbSNP
rs1034514151 2435 dbSNP
rs566258918 2436 dbSNP
rs1470811312 2437 dbSNP
rs1454067399 2441 dbSNP
rs369759775 2445 dbSNP
rs755326705 2448 dbSNP
rs532404500 2449 dbSNP
rs1010255163 2457 dbSNP
rs1435654437 2458 dbSNP
rs1309365013 2463 dbSNP
rs891760516 2465 dbSNP
rs952148697 2466 dbSNP
rs1054379721 2467 dbSNP
rs1000146139 2471 dbSNP
rs900415872 2476 dbSNP
rs1463085753 2481 dbSNP
rs1358419457 2487 dbSNP
rs1243253589 2491 dbSNP
rs1472148914 2494 dbSNP
rs1179768222 2497 dbSNP
rs1289390377 2504 dbSNP
rs1225349886 2505 dbSNP
rs1419299540 2508 dbSNP
rs1374011778 2512 dbSNP
rs1158222116 2513 dbSNP
rs530955951 2516 dbSNP
rs768704434 2518 dbSNP
rs1470941170 2520 dbSNP
rs927277424 2523 dbSNP
rs1440130791 2525 dbSNP
rs1358679910 2531 dbSNP
rs1332968522 2534 dbSNP
rs1299959530 2535 dbSNP
rs980507554 2536 dbSNP
rs971501070 2538 dbSNP
rs1024377698 2545 dbSNP
rs1326047343 2556 dbSNP
rs1224685490 2564 dbSNP
rs1128466 2577 dbSNP
rs1303977503 2591 dbSNP
rs1424308962 2592 dbSNP
rs760981246 2595 dbSNP
rs563759407 2604 dbSNP
rs1207495977 2619 dbSNP
rs145531892 2634 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BACD1
Disease MIMAT0019034
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020024. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguaGAAGGAAGUCggag 5'
              || :||||:|    
Target 5' --gcCUAUCUUCGGggc- 3'
1 - 15
Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020024
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BACD1 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000361716.3 | 3UTR | GCCUAUCUUCGGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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