pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GINS2   
Synonyms HSPC037, PSF2, Pfs2
Description GINS complex subunit 2
Transcript NM_016095   
Expression
Putative miRNA Targets on GINS2
3'UTR of GINS2
(miRNA target sites are highlighted)
>GINS2|NM_016095|3'UTR
   1 AGAAAGGCCTGGTGCAGGCGGCTTGCTGGGGGATGTGAGCGCTCAGGACGTGATGAGGTACTCGTGGTTCTGGAGCTCTA
  81 GAAACACTTCTGATGCATGAAAAATGTGTGATGGTGCAAGGAATGGATTCAGGATGTTGTTGGAGAAACAAGTTTGTGAT
 161 TAGTCCTTAAAACTTAGCTCCCTGGGACATTCTTCAATTCCACATCTGTTTCTAGAAACCAGCCCTTTTTCCCCCCACTT
 241 TTGAGAAATAAAAAAGCCTTAGGTAAATAAGTCATTCTCCCTAGCAGAGCCACTTGGGTCTCCTGCATGGAAGCCATCAC
 321 ACTTGGGCAGGTGTTCAGTGACTGGTAGGTGTAGATACAGCAGGAGTGGCCATGTGGTCCACGGCTTTTTACCCCTTCTT
 401 GATCCTGATTTCTTGGGCTGAATTTAGACTCTCTCACAGAGGTGGCTCACAGAGAAGGATGGCAGATGGTGCAGCCAACA
 481 ATGCTGACCGGTGCTTATCCTCTAAGCCCTGATCCACAATAAAAATGGACCCAACTCAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gguAGAAGGA-AGUCGGag 5'
             |: |||| | ||||  
Target 5' tgcTTATCCTCTAAGCCct 3'
492 - 510 103.00 -8.90
2
miRNA  3' gguagaaggaaGUCGGag 5'
                     |||||  
Target 5' tttctagaaacCAGCCct 3'
209 - 226 100.00 -6.40
3
miRNA  3' gguagaaggaaGUCGGag 5'
                     |||||  
Target 5' ggcagatggtgCAGCCaa 3'
461 - 478 100.00 -6.76
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30143316 33 COSMIC
COSN19132364 48 COSMIC
COSN30463476 90 COSMIC
COSN30531883 160 COSMIC
COSN31504402 197 COSMIC
COSN30140703 226 COSMIC
COSN29362690 356 COSMIC
COSN21447500 678 COSMIC
COSN16658586 680 COSMIC
COSN27215590 747 COSMIC
COSN8239224 1939 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748877585 2 dbSNP
rs1477023098 4 dbSNP
rs1195426650 6 dbSNP
rs775034665 7 dbSNP
rs1302518985 8 dbSNP
rs764880451 9 dbSNP
rs969784762 11 dbSNP
rs1016878962 12 dbSNP
rs1391182952 13 dbSNP
rs1466470668 14 dbSNP
rs759265489 16 dbSNP
rs776476898 19 dbSNP
rs771062381 20 dbSNP
rs371390941 22 dbSNP
rs773475629 26 dbSNP
rs1432270374 27 dbSNP
rs772302722 28 dbSNP
rs1176615026 29 dbSNP
rs748220960 30 dbSNP
rs371163070 34 dbSNP
rs1418423433 36 dbSNP
rs779014887 37 dbSNP
rs375797950 39 dbSNP
rs373542265 40 dbSNP
rs572492014 41 dbSNP
rs750947540 42 dbSNP
rs757848747 44 dbSNP
rs752197561 45 dbSNP
rs764859808 48 dbSNP
rs3751716 49 dbSNP
rs753726180 50 dbSNP
rs539290006 56 dbSNP
rs1006591982 62 dbSNP
rs74346951 63 dbSNP
rs1044008491 64 dbSNP
rs564199899 65 dbSNP
rs1232575930 66 dbSNP
rs867994426 84 dbSNP
rs1011091572 87 dbSNP
rs570658284 88 dbSNP
rs1426628787 89 dbSNP
rs1442195604 92 dbSNP
rs1157982004 98 dbSNP
rs1378332635 99 dbSNP
rs1298566758 105 dbSNP
rs1421354176 105 dbSNP
rs892649637 106 dbSNP
rs1052520000 108 dbSNP
rs1491393762 110 dbSNP
rs910033289 110 dbSNP
rs1309187697 111 dbSNP
rs371703560 111 dbSNP
rs1352128607 114 dbSNP
rs980380210 119 dbSNP
rs939517379 123 dbSNP
rs3751717 130 dbSNP
rs553315027 131 dbSNP
rs778770734 133 dbSNP
rs111942348 136 dbSNP
rs1218951999 138 dbSNP
rs1436784188 139 dbSNP
rs1488531812 146 dbSNP
rs1177457590 148 dbSNP
rs1236355945 151 dbSNP
rs1425690791 155 dbSNP
rs1176397109 158 dbSNP
rs1412831372 159 dbSNP
rs370792724 161 dbSNP
rs1162953022 163 dbSNP
rs1468545534 173 dbSNP
rs1351775329 176 dbSNP
rs1441809864 178 dbSNP
rs1330755740 181 dbSNP
rs993245386 182 dbSNP
rs1449622113 184 dbSNP
rs956056781 186 dbSNP
rs1485029041 192 dbSNP
rs1032210283 194 dbSNP
rs757121498 195 dbSNP
rs184172483 197 dbSNP
rs903723793 198 dbSNP
rs751390461 201 dbSNP
rs75698474 206 dbSNP
rs1458679468 208 dbSNP
rs889705079 208 dbSNP
rs1050992132 211 dbSNP
rs1179214218 212 dbSNP
rs763939457 219 dbSNP
rs1471695813 220 dbSNP
rs1223511295 223 dbSNP
rs1349203793 226 dbSNP
rs528038054 230 dbSNP
rs1416311421 231 dbSNP
rs1462134232 231 dbSNP
rs984068569 232 dbSNP
rs951242454 234 dbSNP
rs565339458 235 dbSNP
rs918424847 236 dbSNP
rs534723847 237 dbSNP
rs1446372767 238 dbSNP
rs941076952 238 dbSNP
rs909603835 239 dbSNP
rs1355754721 241 dbSNP
rs1217662527 256 dbSNP
rs1311140672 257 dbSNP
rs75457038 259 dbSNP
rs567416662 262 dbSNP
rs1018052223 267 dbSNP
rs1007035790 271 dbSNP
rs1359901834 277 dbSNP
rs1021682544 278 dbSNP
rs372917083 279 dbSNP
rs1477343597 285 dbSNP
rs948831146 285 dbSNP
rs1158106811 292 dbSNP
rs1478879210 294 dbSNP
rs1168566206 297 dbSNP
rs1398697108 300 dbSNP
rs563523546 303 dbSNP
rs1336665120 306 dbSNP
rs917522846 314 dbSNP
rs1399712257 315 dbSNP
rs9534 316 dbSNP
rs1052627658 318 dbSNP
rs956256838 322 dbSNP
rs765538533 325 dbSNP
rs1342844471 326 dbSNP
rs978701523 328 dbSNP
rs1280903202 331 dbSNP
rs1254856049 334 dbSNP
rs1487840541 338 dbSNP
rs1214101648 339 dbSNP
rs1189379803 340 dbSNP
rs968794773 344 dbSNP
rs1261390320 347 dbSNP
rs1045173294 360 dbSNP
rs1483377042 361 dbSNP
rs1017605745 366 dbSNP
rs377075763 371 dbSNP
rs1477060105 375 dbSNP
rs1241119556 381 dbSNP
rs537155577 382 dbSNP
rs1396152623 383 dbSNP
rs1048384631 391 dbSNP
rs1296732987 392 dbSNP
rs929960382 394 dbSNP
rs1382413592 405 dbSNP
rs4565 407 dbSNP
rs1328878350 414 dbSNP
rs551416420 432 dbSNP
rs1304078561 435 dbSNP
rs1237745627 436 dbSNP
rs1334751661 436 dbSNP
rs1287869925 437 dbSNP
rs976653288 442 dbSNP
rs1205978706 445 dbSNP
rs1277666119 445 dbSNP
rs1291526650 450 dbSNP
rs1449953255 459 dbSNP
rs1195567088 463 dbSNP
rs572425629 466 dbSNP
rs1235139038 469 dbSNP
rs192956788 475 dbSNP
rs896843016 479 dbSNP
rs1382575720 485 dbSNP
rs1454592357 488 dbSNP
rs551304590 489 dbSNP
rs1005182624 494 dbSNP
rs888205144 498 dbSNP
rs1376139015 502 dbSNP
rs768088228 503 dbSNP
rs1311320759 509 dbSNP
rs1317301471 514 dbSNP
rs1044159978 516 dbSNP
rs985243237 519 dbSNP
rs1265141695 526 dbSNP
rs1354502779 527 dbSNP
rs1320968957 531 dbSNP
rs1215677836 532 dbSNP
rs1273865722 534 dbSNP
rs1457332962 536 dbSNP
rs1177347109 538 dbSNP
rs545511155 539 dbSNP
rs917403971 541 dbSNP
rs1415498860 545 dbSNP
rs576644199 546 dbSNP
rs761049251 547 dbSNP
rs1418139663 548 dbSNP
rs1184448866 551 dbSNP
rs988468866 552 dbSNP
rs1463547319 553 dbSNP
rs924831372 554 dbSNP
rs1250355586 563 dbSNP
rs1333300824 566 dbSNP
rs75765722 567 dbSNP
rs1468430797 569 dbSNP
rs1395309532 574 dbSNP
rs1338975854 578 dbSNP
rs78958556 580 dbSNP
rs968658889 581 dbSNP
rs1031234355 584 dbSNP
rs910672775 585 dbSNP
rs773575332 587 dbSNP
rs1196759012 590 dbSNP
rs1344033740 592 dbSNP
rs986178066 595 dbSNP
rs1003724559 596 dbSNP
rs954038799 608 dbSNP
rs772368799 610 dbSNP
rs1422398555 611 dbSNP
rs1024188925 613 dbSNP
rs1171899427 614 dbSNP
rs1355083589 615 dbSNP
rs1029485131 616 dbSNP
rs998399631 617 dbSNP
rs888566564 618 dbSNP
rs1048501518 621 dbSNP
rs1364282822 622 dbSNP
rs1298070686 629 dbSNP
rs568170469 630 dbSNP
rs554801871 632 dbSNP
rs897140415 633 dbSNP
rs1458320189 635 dbSNP
rs1262106931 636 dbSNP
rs534646905 640 dbSNP
rs1353485907 642 dbSNP
rs1187812434 645 dbSNP
rs1419640288 649 dbSNP
rs1167687205 651 dbSNP
rs943925579 657 dbSNP
rs911066957 658 dbSNP
rs1363142548 659 dbSNP
rs748499674 659 dbSNP
rs1304620376 660 dbSNP
rs1428918392 662 dbSNP
rs1429943019 663 dbSNP
rs1362758669 666 dbSNP
rs1386228228 670 dbSNP
rs1449403601 670 dbSNP
rs985659487 671 dbSNP
rs565325316 672 dbSNP
rs1235528421 674 dbSNP
rs1285729096 679 dbSNP
rs1044191643 680 dbSNP
rs1351901174 680 dbSNP
rs1012654868 688 dbSNP
rs1390330682 691 dbSNP
rs988499807 691 dbSNP
rs1189645710 692 dbSNP
rs895525243 694 dbSNP
rs1454069543 697 dbSNP
rs1454633106 698 dbSNP
rs1057317229 708 dbSNP
rs1157875523 713 dbSNP
rs1251495802 716 dbSNP
rs146744305 716 dbSNP
rs924898121 718 dbSNP
rs1035289198 719 dbSNP
rs982337527 723 dbSNP
rs1043283036 724 dbSNP
rs1250846800 726 dbSNP
rs947431442 728 dbSNP
rs1974869 741 dbSNP
rs539629275 741 dbSNP
rs1344623027 742 dbSNP
rs533241784 746 dbSNP
rs865793505 748 dbSNP
rs538322760 749 dbSNP
rs1320735587 754 dbSNP
rs1233816138 757 dbSNP
rs569702782 760 dbSNP
rs954831239 761 dbSNP
rs1274480945 766 dbSNP
rs994230026 770 dbSNP
rs923326987 771 dbSNP
rs897174898 772 dbSNP
rs976620248 775 dbSNP
rs1041036154 777 dbSNP
rs1305353030 780 dbSNP
rs1404966480 780 dbSNP
rs1162996627 785 dbSNP
rs1396820784 789 dbSNP
rs557174208 794 dbSNP
rs752045700 794 dbSNP
rs961493805 797 dbSNP
rs1015558328 818 dbSNP
rs943973658 822 dbSNP
rs559419224 832 dbSNP
rs1974868 835 dbSNP
rs1231093861 840 dbSNP
rs1295949260 844 dbSNP
rs1049651417 847 dbSNP
rs1197448736 849 dbSNP
rs947230567 855 dbSNP
rs952385123 857 dbSNP
rs530275799 860 dbSNP
rs1205020408 868 dbSNP
rs1012970537 870 dbSNP
rs1471664653 872 dbSNP
rs1370808682 873 dbSNP
rs1391142523 878 dbSNP
rs1420219869 881 dbSNP
rs914380265 884 dbSNP
rs1170049947 888 dbSNP
rs554564786 890 dbSNP
rs1412108412 891 dbSNP
rs1330081483 892 dbSNP
rs1358954116 907 dbSNP
rs561329826 911 dbSNP
rs1217526496 912 dbSNP
rs928306765 915 dbSNP
rs1340800486 917 dbSNP
rs999069664 925 dbSNP
rs981552630 927 dbSNP
rs969741589 932 dbSNP
rs916847453 933 dbSNP
rs1259955832 934 dbSNP
rs903361031 935 dbSNP
rs1376374400 936 dbSNP
rs1193098254 941 dbSNP
rs745433671 942 dbSNP
rs548069266 943 dbSNP
rs1027128753 945 dbSNP
rs1433327142 951 dbSNP
rs889339667 953 dbSNP
rs1250390059 955 dbSNP
rs1375733091 956 dbSNP
rs377267701 958 dbSNP
rs1175581807 959 dbSNP
rs1399038051 961 dbSNP
rs1315743348 962 dbSNP
rs528032715 968 dbSNP
rs780518647 969 dbSNP
rs528937285 970 dbSNP
rs933279090 974 dbSNP
rs565264395 975 dbSNP
rs1019710567 977 dbSNP
rs1280748683 982 dbSNP
rs1352645935 987 dbSNP
rs1008672796 990 dbSNP
rs972555119 991 dbSNP
rs879743630 994 dbSNP
rs939891864 998 dbSNP
rs1345977242 1001 dbSNP
rs1193992564 1005 dbSNP
rs561676844 1006 dbSNP
rs751386640 1012 dbSNP
rs775686245 1013 dbSNP
rs1316301240 1019 dbSNP
rs1396102398 1022 dbSNP
rs1419411131 1024 dbSNP
rs1304718249 1025 dbSNP
rs1156456975 1030 dbSNP
rs952623338 1030 dbSNP
rs1400851022 1031 dbSNP
rs552817454 1037 dbSNP
rs1022847191 1040 dbSNP
rs1311735797 1041 dbSNP
rs543497192 1042 dbSNP
rs1375880021 1044 dbSNP
rs1236599364 1046 dbSNP
rs959969913 1055 dbSNP
rs1035486481 1057 dbSNP
rs777723264 1059 dbSNP
rs1272651837 1060 dbSNP
rs1011461222 1062 dbSNP
rs903392130 1063 dbSNP
rs1254109617 1064 dbSNP
rs114791237 1065 dbSNP
rs1011678119 1068 dbSNP
rs1470293694 1069 dbSNP
rs889368964 1071 dbSNP
rs1391686470 1072 dbSNP
rs1462495896 1073 dbSNP
rs1051109422 1074 dbSNP
rs576528494 1078 dbSNP
rs901821771 1082 dbSNP
rs1412867873 1088 dbSNP
rs1045472787 1100 dbSNP
rs1292831979 1101 dbSNP
rs1332787272 1103 dbSNP
rs1036477013 1104 dbSNP
rs1274420932 1108 dbSNP
rs1480573984 1111 dbSNP
rs562958983 1114 dbSNP
rs1253124873 1115 dbSNP
rs1438707775 1116 dbSNP
rs539383739 1117 dbSNP
rs940766715 1118 dbSNP
rs1200843632 1124 dbSNP
rs1415133985 1126 dbSNP
rs991493243 1127 dbSNP
rs542757003 1129 dbSNP
rs1372486620 1131 dbSNP
rs1460429083 1139 dbSNP
rs1258702464 1141 dbSNP
rs1230221702 1144 dbSNP
rs983955738 1148 dbSNP
rs1312560049 1149 dbSNP
rs1353791774 1150 dbSNP
rs574571518 1151 dbSNP
rs1292145095 1153 dbSNP
rs1293960382 1154 dbSNP
rs1230887463 1158 dbSNP
rs554508311 1159 dbSNP
rs1334461020 1160 dbSNP
rs1381276265 1163 dbSNP
rs1384782312 1165 dbSNP
rs1287472485 1167 dbSNP
rs1210613895 1168 dbSNP
rs1255014252 1168 dbSNP
rs1486437837 1169 dbSNP
rs1491135967 1180 dbSNP
rs75208819 1180 dbSNP
rs1260473100 1181 dbSNP
rs1373562680 1181 dbSNP
rs1426155365 1181 dbSNP
rs34197467 1181 dbSNP
rs397856093 1181 dbSNP
rs71388005 1181 dbSNP
rs915866546 1181 dbSNP
rs920095979 1181 dbSNP
rs1459297112 1182 dbSNP
rs62051383 1183 dbSNP
rs1416879328 1184 dbSNP
rs972937660 1186 dbSNP
rs1361360114 1191 dbSNP
rs1380539752 1196 dbSNP
rs534587502 1198 dbSNP
rs991815194 1200 dbSNP
rs959759301 1202 dbSNP
rs1278668874 1203 dbSNP
rs928278225 1204 dbSNP
rs572033482 1207 dbSNP
rs967119922 1208 dbSNP
rs1370244371 1210 dbSNP
rs868854553 1212 dbSNP
rs1021290948 1213 dbSNP
rs1453702312 1214 dbSNP
rs1191616059 1217 dbSNP
rs1396690785 1220 dbSNP
rs1028289267 1221 dbSNP
rs538115098 1222 dbSNP
rs953543928 1223 dbSNP
rs1290689408 1230 dbSNP
rs1029269599 1233 dbSNP
rs1052957129 1236 dbSNP
rs998162461 1236 dbSNP
rs1465317447 1238 dbSNP
rs902064936 1239 dbSNP
rs1036787404 1241 dbSNP
rs569535608 1244 dbSNP
rs1045909591 1245 dbSNP
rs143501300 1246 dbSNP
rs1217372311 1248 dbSNP
rs1049164366 1254 dbSNP
rs866337618 1255 dbSNP
rs1324261814 1260 dbSNP
rs894141221 1261 dbSNP
rs576079817 1262 dbSNP
rs1407595522 1263 dbSNP
rs1437674376 1265 dbSNP
rs1055745985 1266 dbSNP
rs1325880912 1280 dbSNP
rs569562387 1281 dbSNP
rs1393051730 1283 dbSNP
rs1163895145 1293 dbSNP
rs549803563 1298 dbSNP
rs187895517 1299 dbSNP
rs1279312478 1301 dbSNP
rs1371564489 1303 dbSNP
rs912699802 1305 dbSNP
rs1307181507 1308 dbSNP
rs116076443 1311 dbSNP
rs966983240 1312 dbSNP
rs148657028 1314 dbSNP
rs914361954 1317 dbSNP
rs989839506 1318 dbSNP
rs990142082 1322 dbSNP
rs957354031 1324 dbSNP
rs1230994346 1326 dbSNP
rs563869712 1326 dbSNP
rs759651718 1328 dbSNP
rs1029588249 1331 dbSNP
rs1474961443 1334 dbSNP
rs35953313 1342 dbSNP
rs966696913 1343 dbSNP
rs1406480568 1344 dbSNP
rs71390984 1349 dbSNP
rs114442328 1350 dbSNP
rs34019472 1350 dbSNP
rs1004919101 1353 dbSNP
rs1230964294 1358 dbSNP
rs1294622782 1359 dbSNP
rs541410465 1359 dbSNP
rs1213924230 1362 dbSNP
rs1013085569 1363 dbSNP
rs1309103730 1367 dbSNP
rs1204955380 1368 dbSNP
rs887777461 1370 dbSNP
rs1049199988 1371 dbSNP
rs1186014466 1376 dbSNP
rs1012325521 1384 dbSNP
rs1259732987 1392 dbSNP
rs565552030 1400 dbSNP
rs930326938 1401 dbSNP
rs568746964 1403 dbSNP
rs1037298832 1405 dbSNP
rs895204279 1411 dbSNP
rs1169586878 1414 dbSNP
rs1303120181 1416 dbSNP
rs1412574652 1417 dbSNP
rs531683308 1422 dbSNP
rs1056053375 1424 dbSNP
rs938490752 1425 dbSNP
rs1429402116 1435 dbSNP
rs1268417191 1439 dbSNP
rs1228936488 1444 dbSNP
rs1363955302 1444 dbSNP
rs376833211 1447 dbSNP
rs1279366347 1448 dbSNP
rs1333275271 1459 dbSNP
rs907123057 1460 dbSNP
rs1280925680 1461 dbSNP
rs183800306 1463 dbSNP
rs1240906290 1464 dbSNP
rs912723473 1466 dbSNP
rs1189732633 1467 dbSNP
rs1394863261 1479 dbSNP
rs1433186414 1486 dbSNP
rs372246332 1487 dbSNP
rs914226116 1491 dbSNP
rs989744508 1492 dbSNP
rs369501109 1493 dbSNP
rs1399659725 1495 dbSNP
rs1170766166 1496 dbSNP
rs932805018 1502 dbSNP
rs921385949 1503 dbSNP
rs1435761521 1514 dbSNP
rs1302499177 1521 dbSNP
rs931741503 1525 dbSNP
rs1394314617 1529 dbSNP
rs550680338 1533 dbSNP
rs1276897690 1535 dbSNP
rs921660014 1542 dbSNP
rs1204677746 1544 dbSNP
rs192119017 1545 dbSNP
rs1466258292 1549 dbSNP
rs976663360 1551 dbSNP
rs1252906463 1552 dbSNP
rs966227163 1556 dbSNP
rs574082400 1558 dbSNP
rs1377895921 1559 dbSNP
rs1015221614 1561 dbSNP
rs866182962 1562 dbSNP
rs1386494921 1564 dbSNP
rs1247174820 1565 dbSNP
rs983687629 1568 dbSNP
rs1392196506 1572 dbSNP
rs1024642078 1573 dbSNP
rs952057450 1574 dbSNP
rs1435619604 1575 dbSNP
rs1238610960 1576 dbSNP
rs1277946006 1576 dbSNP
rs1027671587 1578 dbSNP
rs1012231900 1579 dbSNP
rs547142242 1581 dbSNP
rs1280076136 1582 dbSNP
rs1027422635 1583 dbSNP
rs1035076862 1586 dbSNP
rs994557650 1590 dbSNP
rs1276015573 1592 dbSNP
rs1442078100 1595 dbSNP
rs1163542756 1596 dbSNP
rs1003154550 1598 dbSNP
rs1462966697 1599 dbSNP
rs907017152 1601 dbSNP
rs897502567 1602 dbSNP
rs1327183413 1605 dbSNP
rs766305036 1605 dbSNP
rs945979271 1612 dbSNP
rs1410572805 1616 dbSNP
rs1375007263 1617 dbSNP
rs1008977147 1624 dbSNP
rs1229022357 1625 dbSNP
rs1332718402 1626 dbSNP
rs893030429 1627 dbSNP
rs891410018 1636 dbSNP
rs1331985794 1639 dbSNP
rs144068788 1643 dbSNP
rs149900544 1645 dbSNP
rs761263131 1647 dbSNP
rs376097684 1649 dbSNP
rs553296839 1651 dbSNP
rs1254815972 1655 dbSNP
rs1425578218 1660 dbSNP
rs1424983656 1661 dbSNP
rs1372424463 1664 dbSNP
rs558392238 1666 dbSNP
rs1170232327 1668 dbSNP
rs188073028 1669 dbSNP
rs1430683745 1673 dbSNP
rs936054927 1674 dbSNP
rs924618833 1676 dbSNP
rs977432937 1677 dbSNP
rs575988994 1678 dbSNP
rs1254907132 1679 dbSNP
rs1326324472 1680 dbSNP
rs944895197 1694 dbSNP
rs1277236640 1699 dbSNP
rs1343266876 1702 dbSNP
rs1277737518 1703 dbSNP
rs1483985642 1705 dbSNP
rs1181904785 1707 dbSNP
rs908030005 1708 dbSNP
rs35131509 1712 dbSNP
rs1426689082 1713 dbSNP
rs1211776431 1716 dbSNP
rs1190393047 1717 dbSNP
rs991798880 1718 dbSNP
rs983592427 1720 dbSNP
rs1223776898 1721 dbSNP
rs1357636473 1723 dbSNP
rs952293734 1723 dbSNP
rs1467679871 1724 dbSNP
rs1303476817 1733 dbSNP
rs1384283340 1735 dbSNP
rs1027869803 1736 dbSNP
rs1366449701 1737 dbSNP
rs994590336 1737 dbSNP
rs139115172 1743 dbSNP
rs959394625 1746 dbSNP
rs772564168 1748 dbSNP
rs1355089132 1749 dbSNP
rs1484571106 1751 dbSNP
rs1003617545 1752 dbSNP
rs902566205 1753 dbSNP
rs1248551305 1759 dbSNP
rs1450426917 1766 dbSNP
rs1020092438 1768 dbSNP
rs1009985121 1775 dbSNP
rs183377954 1782 dbSNP
rs1455586475 1783 dbSNP
rs890099029 1785 dbSNP
rs1177007200 1787 dbSNP
rs762205670 1788 dbSNP
rs1051369242 1789 dbSNP
rs1474565168 1790 dbSNP
rs997479032 1792 dbSNP
rs1389979166 1796 dbSNP
rs1282989821 1800 dbSNP
rs867133827 1803 dbSNP
rs1410955151 1805 dbSNP
rs1440693357 1811 dbSNP
rs1054290300 1816 dbSNP
rs1370134490 1820 dbSNP
rs1183307938 1821 dbSNP
rs900018200 1826 dbSNP
rs1054514711 1831 dbSNP
rs1229690191 1831 dbSNP
rs1268732570 1834 dbSNP
rs1467956934 1839 dbSNP
rs996282121 1841 dbSNP
rs900146328 1847 dbSNP
rs372770719 1855 dbSNP
rs868286070 1856 dbSNP
rs944486568 1858 dbSNP
rs147351149 1861 dbSNP
rs1209881224 1864 dbSNP
rs1250077422 1867 dbSNP
rs1047928409 1871 dbSNP
rs930765357 1880 dbSNP
rs920883023 1881 dbSNP
rs991085511 1887 dbSNP
rs959665063 1890 dbSNP
rs927998580 1892 dbSNP
rs553932120 1894 dbSNP
rs142671027 1900 dbSNP
rs1310657044 1901 dbSNP
rs1230301212 1902 dbSNP
rs966767447 1903 dbSNP
rs1380083293 1904 dbSNP
rs1020958955 1906 dbSNP
rs1348202084 1907 dbSNP
rs1269378915 1908 dbSNP
rs1411176197 1909 dbSNP
rs917207284 1910 dbSNP
rs991427430 1915 dbSNP
rs1231384702 1916 dbSNP
rs1010056878 1919 dbSNP
rs1322176377 1922 dbSNP
rs920506846 1926 dbSNP
rs1232575477 1929 dbSNP
rs957197851 1931 dbSNP
rs76341310 1932 dbSNP
rs961858925 1933 dbSNP
rs1416580376 1935 dbSNP
rs138668435 1938 dbSNP
rs900390872 1939 dbSNP
rs1347674158 1940 dbSNP
rs1166219687 1948 dbSNP
rs1040061013 1953 dbSNP
rs1431285429 1954 dbSNP
rs1405600856 1959 dbSNP
rs1418303708 1968 dbSNP
rs954416299 1973 dbSNP
rs1285924858 1974 dbSNP
rs1379777740 1979 dbSNP
rs745470099 1987 dbSNP
rs1448104359 1991 dbSNP
rs1272250298 1995 dbSNP
rs1343960521 1996 dbSNP
rs1250253252 2001 dbSNP
rs368094439 2002 dbSNP
rs1207577814 2004 dbSNP
rs1275610618 2004 dbSNP
rs1029042486 2008 dbSNP
rs1488432647 2010 dbSNP
rs1208066149 2011 dbSNP
rs997112844 2012 dbSNP
rs1473423553 2015 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BACD1
Disease MIMAT0019034
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020024. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020024
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BACD1 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000253462.3 | 3UTR | GCCUAUUUUUGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

Error report submission