pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol GPAM   
Synonyms GPAT, GPAT1
Description glycerol-3-phosphate acyltransferase, mitochondrial
Transcript NM_020918   
Expression
Putative miRNA Targets on GPAM
3'UTR of GPAM
(miRNA target sites are highlighted)
>GPAM|NM_020918|3'UTR
   1 GTAACGTGTGGCACTGCTGGCAAATGAAGGTCATGAGATGAGTTCCTTGTAGGTACCAGCTTCTGGCTCAAGAGTTGAAG
  81 GTGCCATCGCAGGGTCAGGCCTGCCCTGTCCCGAAGTGATCTCCTGGAAGACAAGTGCCTTCTCCCTCCATGGATCTGTG
 161 ATCTTCCCAGCTCTGCATCAACACAGCAGCCTGCAGATAACACTTGGGGGGACCTCAGCCTCTATTCGCAACTCATAATC
 241 CGTAGACTACAAGATGAAATCTCAATAAATTATTTTTGAGTTTATTAAAGATTGACATTTTAAGTACAACTTTTAAGGAC
 321 TAATTACTGTGATGGACACAGAAATGTAGCTGTGTTCTGGAACTGAATCTTACATGGTATACTTAGTGCTGCTGGGTAAT
 401 TTGTTGGTATATTATCTGGTTAGTGGTTAATGCTTCCTTTAAAAATAATTGAGTCATCCATTCACTCTTTTTCAGTTTTA
 481 TCTGTCAATAGTAGCTACATTTTTAATGGGAGCACCTTTTATCCCAAAGTGCTTTATAAATTGAGTGGACTGATATATAT
 561 CACACCCAGGTATCACTGTGCTGTCCTTTGCTGTCAGATTTAGAAATGTTTTTAAGAGCTATGTGAAAACAGACAATATT
 641 AGTTTAGGTCGGGAACTGAGATATTGTAATCAAATAGTTAACATCAGGAAGTTAATTTGGCTGGCAAAATTCTAGGGAAA
 721 CTTGGCCAGAAAACTGGTGTTGAAGGCTTTTGCTCATATAAACAAGTGCCATTGAGTTTCAAATGACCAGCAAATATATT
 801 TAGAACCCTTCCTGTTTTATGTCTGTACCTCGTCCACCCCTCAGGTAATACCTGCCTCTCACAGGTACAGCTGTTTCTTG
 881 GAAATCCTCCAACCAAATAGCAGTTTTCCTAACTTGATTAGCTTGAGCTGACAGACTGTTAGAATACAGTTCTCTGGCCA
 961 CAGCTGATGAGGGCTTTCTGTACTGCACACAGATTGTGTACTGCACCCCAGTCCAGGTGACTGGTACCCACTCGAGTTGT
1041 GCCGTGCACAACCTGTCCAGTATATGCATGTGGTGGCCCTACTGACTGGTAATGGTTAGAGGCATTTATGGATTTTTAGC
1121 TTTGAGGAAAAACCATGACTTTTAACAAATTTTTATGGGTTATATGCCTAAACCCTTATGCCACATAGTGGTAAATAATT
1201 ATGAAAAATGGTCTGTTCATAATTGGTAGGTGCCTTTTGTGAGCAGGGAGCATAATTATTGGTTTATTATGGTAATTATG
1281 GTGATTTTTTAAATATCATGTAATGTTAAAACGTTTTCTAACAGTTTACTGTTGCTTATCTCCAAGATATTATGGAATTA
1361 AGAATTTTTCCAGATGAGTGTTACATAGATTCTTTGAATTTAGTATAAAAGTACTGAGAATTAAGTTTGTACTTCCATAA
1441 GCTTGGATTTTAAACACTGATAGTATCTCATGAGTAATGTGTGTTTTGGGAGAGGGAGGGATGCTGATTGATATTTCACA
1521 TTGTATGAAATACCATGTTTGAAACTCATAGCAATAATGCTATGCTGTTGTGATCCCTCTCAAGTTCTGCATTTAAAATA
1601 TATTTTTTCTTTATAGGAATTGATGTATACCATGAAGTCATTGTCAGTTGTAGTAGCTCTGATGTTGAATGAGATATCAT
1681 GTTTTAGCATTCCATTTTACTGACTAGGGTAGAAGAACACTTTTCTTGGCTACATTTGGAGGATACCCAGGGAGTCTTGG
1761 GTGTTCCTTATCTGGGGAAGCAAACATTTCACTAGTCTCTTTTTTTCATCCTTTAAATTGTAAATTAAGGATTACTCAAG
1841 CTCACCATTATTCAAGATTGGGACTCGCTTCCCAGTCGACACTCTGCCCTGCCTGTCATTGCTGCAAAGAGCTGCTGCTT
1921 TGCCAACCTAAGCAAAGAAAATACGGCTTCTCTTGCATTATTTTCCCTTTTGGTTGGTTTGTTTTCTAGAAGTACGTTCA
2001 GATGCTTTGGGGAATGCAATGTATGATTTGCTAGCTCTCTCACCACTTAACTCACTGTGAGGATAAATATGCATGCTTTT
2081 TGTAATTAACTGGTGCTTTGAAAATCTTTTTTAAGGGAGAAAAATCTCAACCAAAGTTATGCTCATCCAGACAAGCTGAC
2161 CTTTGAGTTAATTTCAGCACAACTCATTCTTCAGTGCCTCATGACTGAAAACAAAAAACAAAAAAACGAAAGCATCTTCA
2241 CAATGAAGCTTCCAGATAGCACCGTTTTGCTAAAAGATACATTCTCATTGTTTTCCAACAGTGATGGCTTCCACATAAGG
2321 TTAAACAAACTAGGTGCTTGTAAATAATTTATTACAGTTTACTCTATCGCATTTCTGTAACATGAAATGCATGCCCTTCT
2401 TCAGGGGAAGACTGTGGTCAAGTTAAAAAAAAAAAACAATATTAAACAACATGAAACTGCAGTCTGTTTTTGAAAATGAG
2481 AATGTCCTAAGTGATTCAGAAGAGAGGAGGGAAGTTGTGCACTCTGAAAATGCATGAAAAACAAAGGCAAAAACTAGTGG
2561 GAAATGTGTAGAACTGTTAACTGAGATGGCTTCGAGTCTTCCTTCTGGAATCTGTTAAATTTCACAAAGTCATGAGGGTA
2641 AATGGAGAAAATATTTCTGGGATTACAATGAATGTAAGCCCAAATTGTGGAATTGCCAGTAACCTGGATGGGGAAAAGCA
2721 TTTCCCATAGCACTCCATGTAATATGAGTGCTCTGTGAGATGTTCATCAGTGTTTTATAGAAATGGTGTTGCTGGGAAAC
2801 CAAGTTTGCACCTGGAAACTTACAATGCACTTTAGCGCAGTAAGGGCTTGGCATCCGGTAGTGAAAAACTGTCTAACCCA
2881 GCATTGCCCAAACTATTTTGACACCAGGACCTTTTTCTCCTTTGGGATACTTATGAACCTCTCACTAATGTCCTGTGGAG
2961 AACATTTTGGGAAACACTATGTTAGATAGTTCTTTAAGGAGACAAAACGGTAATGAACAGATAGCACTGGGGCAGAATAT
3041 GCATGCATTTTGTAACGTCCAGTGTGGCGTTGAATAGATGTGTATTTCCTCCCCTGCAGAAAATAAGCACAGAAAATTAT
3121 AATGTAGGTGATCGGAGCTCTTTCCTTTGATAGAGAGAACAGCCCCAATGATCCTGGCTTTTTCACTGAACGTATCAGAA
3201 TACATGGATGAATTGGGGTAAATAAGGTTTTAATTCAGATCTAGAAGAAAGTATTGTACGTTTGAATGCAGATTTTTATC
3281 CACAGATAGTTGTAGTGTTTAGACATGACAGGACCTATCGTTGAGGTTTCTAAGACTTACTATGGGCTGTAAACCTGTTT
3361 TTTAAAACTATTTTAGAAACCTGAGACTTGCCGTCTGGCATTTTAGTTTAATACAAACTAATGATTGCATTTGAAAGAGA
3441 TTCTTGACCTTATTTCTAAACGTCTAGAGCTCTGAAATGTCTTGATGGAAGGTATTAAACTATTTGCCTGTTGTACAAAG
3521 AAATGTTAAGACTCGTGAAAAGAATTACTATAAGGTACTGTGAAATAACTGCGATTTTGTGAGCAAAACATACTTGGAAA
3601 TGCTGATTGATTTTTATGCTTGTTAGTGTATTGCAAGAAACACAGAAAATGTAGTTTTGTTTTAATAAACCAAAAATTGA
3681 ACATACAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuucaUUGAAGG------UGAACCGa 5'
                || |||:      ||||||| 
Target 5' ctggcaAAATTCTAGGGAAACTTGGCc 3'
701 - 727 145.00 -9.70
2
miRNA  3' auuUCAUUGAAGGUGAACCGa 5'
             || || ||  |:||||| 
Target 5' atcAGGAAGTT-AATTTGGCt 3'
683 - 702 137.00 -9.90
3
miRNA  3' auuUCAUUGAAGGUGAACCGa 5'
             |||||     :|||||| 
Target 5' cgcAGTAA---GGGCTTGGCa 3'
2836 - 2853 131.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26977749 6 COSMIC
COSN30475922 7 COSMIC
COSN30493549 7 COSMIC
COSN30459006 45 COSMIC
COSN31594266 55 COSMIC
COSN31506654 63 COSMIC
COSN26565560 67 COSMIC
COSN26977751 84 COSMIC
COSN26977752 88 COSMIC
COSN30150031 112 COSMIC
COSN29976979 113 COSMIC
COSN18734862 115 COSMIC
COSN31550923 124 COSMIC
COSN30477770 145 COSMIC
COSN30533491 177 COSMIC
COSN30505132 228 COSMIC
COSN28198274 268 COSMIC
COSN31534427 294 COSMIC
COSN15117107 302 COSMIC
COSN20300158 378 COSMIC
COSN21636547 574 COSMIC
COSN29148204 701 COSMIC
COSN17311634 725 COSMIC
COSN32129895 808 COSMIC
COSN26259976 967 COSMIC
COSN25047935 986 COSMIC
COSN1471585 1140 COSMIC
COSN5278291 1513 COSMIC
COSN22865419 1629 COSMIC
COSN32129894 1884 COSMIC
COSN31568851 2106 COSMIC
COSN32129893 2144 COSMIC
COSN31489480 2180 COSMIC
COSN26602443 2212 COSMIC
COSN20107549 2227 COSMIC
COSN21908341 2255 COSMIC
COSN14455811 2337 COSMIC
COSN32129892 2418 COSMIC
COSN27436743 2424 COSMIC
COSN32129891 2594 COSMIC
COSN6961074 2712 COSMIC
COSN6961073 2713 COSMIC
COSN31564643 3069 COSMIC
COSN28687542 3109 COSMIC
COSN30175909 3134 COSMIC
COSN31590128 3191 COSMIC
COSN30169489 3246 COSMIC
COSN29838296 3289 COSMIC
COSN15727817 3443 COSMIC
COSN31514720 3672 COSMIC
rs2297991 86 GWAS
rs1129555 2587 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs985243828 1 dbSNP
rs559993696 5 dbSNP
rs755264433 6 dbSNP
rs375893400 10 dbSNP
rs780267872 11 dbSNP
rs756270705 16 dbSNP
rs1228452324 24 dbSNP
rs1391686000 32 dbSNP
rs1190894812 33 dbSNP
rs1261917659 38 dbSNP
rs1353679282 42 dbSNP
rs750493652 45 dbSNP
rs1241900380 51 dbSNP
rs1208799915 57 dbSNP
rs993509139 66 dbSNP
rs1173849568 69 dbSNP
rs901871825 80 dbSNP
rs1412903350 81 dbSNP
rs1424508231 83 dbSNP
rs2297991 86 dbSNP
rs577026882 88 dbSNP
rs558718035 89 dbSNP
rs1164037182 91 dbSNP
rs1043575621 93 dbSNP
rs936373590 99 dbSNP
rs543418172 106 dbSNP
rs1307864907 108 dbSNP
rs1371587046 111 dbSNP
rs576001210 112 dbSNP
rs554838657 113 dbSNP
rs17129557 115 dbSNP
rs1235166862 135 dbSNP
rs1208602629 138 dbSNP
rs1361201798 150 dbSNP
rs918065788 151 dbSNP
rs1273603351 153 dbSNP
rs565819212 167 dbSNP
rs1052023741 168 dbSNP
rs940915839 172 dbSNP
rs1236081236 181 dbSNP
rs553567017 183 dbSNP
rs984782885 196 dbSNP
rs939009538 197 dbSNP
rs199730141 203 dbSNP
rs541180265 204 dbSNP
rs1168227823 206 dbSNP
rs538481391 207 dbSNP
rs976193973 211 dbSNP
rs1301590340 212 dbSNP
rs1378828304 212 dbSNP
rs966544782 216 dbSNP
rs573290162 227 dbSNP
rs552300377 228 dbSNP
rs1225644401 232 dbSNP
rs916023066 236 dbSNP
rs984994718 238 dbSNP
rs1229425070 240 dbSNP
rs1436835346 241 dbSNP
rs774747439 242 dbSNP
rs1158270812 250 dbSNP
rs1245005411 251 dbSNP
rs1026387967 252 dbSNP
rs1044724824 276 dbSNP
rs1440742930 278 dbSNP
rs1188098473 287 dbSNP
rs972165315 290 dbSNP
rs1430655320 296 dbSNP
rs1174445596 304 dbSNP
rs1416028066 306 dbSNP
rs530928255 308 dbSNP
rs1377537227 309 dbSNP
rs7078775 311 dbSNP
rs1179217813 314 dbSNP
rs113136146 321 dbSNP
rs1407580091 324 dbSNP
rs1319467840 327 dbSNP
rs548819842 330 dbSNP
rs1362277077 333 dbSNP
rs761230443 334 dbSNP
rs896229333 334 dbSNP
rs1036500097 341 dbSNP
rs77150189 345 dbSNP
rs780643745 348 dbSNP
rs1007856469 349 dbSNP
rs559950666 353 dbSNP
rs151007929 357 dbSNP
rs532779240 358 dbSNP
rs1189717130 360 dbSNP
rs921904468 370 dbSNP
rs1434131856 374 dbSNP
rs1202210871 377 dbSNP
rs976083807 381 dbSNP
rs1455160189 383 dbSNP
rs966119874 391 dbSNP
rs1022527683 395 dbSNP
rs371638485 402 dbSNP
rs1454988879 425 dbSNP
rs892330624 426 dbSNP
rs192436212 427 dbSNP
rs956769627 431 dbSNP
rs1285106248 436 dbSNP
rs939137060 437 dbSNP
rs1032204821 438 dbSNP
rs543194267 441 dbSNP
rs1227836986 446 dbSNP
rs905139140 472 dbSNP
rs746574919 476 dbSNP
rs1318846399 479 dbSNP
rs1219576193 485 dbSNP
rs1023220020 488 dbSNP
rs575952452 490 dbSNP
rs896230766 492 dbSNP
rs1250225036 515 dbSNP
rs1044736856 537 dbSNP
rs554269640 541 dbSNP
rs916177967 542 dbSNP
rs1049805836 544 dbSNP
rs930780035 552 dbSNP
rs1227680267 553 dbSNP
rs1407998982 554 dbSNP
rs1005034937 556 dbSNP
rs1162239646 560 dbSNP
rs1349009211 563 dbSNP
rs1425025152 564 dbSNP
rs1304780430 567 dbSNP
rs919465680 570 dbSNP
rs542878955 574 dbSNP
rs966126786 580 dbSNP
rs1375605223 586 dbSNP
rs911842735 606 dbSNP
rs922186447 610 dbSNP
rs986168748 611 dbSNP
rs953390522 615 dbSNP
rs1022201879 627 dbSNP
rs1010803617 628 dbSNP
rs944743636 642 dbSNP
rs201113658 648 dbSNP
rs956528745 650 dbSNP
rs913295574 651 dbSNP
rs1482938282 660 dbSNP
rs750358804 661 dbSNP
rs957487159 666 dbSNP
rs75612811 668 dbSNP
rs1384194936 676 dbSNP
rs1444810961 681 dbSNP
rs979240735 682 dbSNP
rs1420489593 686 dbSNP
rs187962211 687 dbSNP
rs1045096807 697 dbSNP
rs1011901206 700 dbSNP
rs1356251238 701 dbSNP
rs969244223 716 dbSNP
rs1302290771 724 dbSNP
rs1383664357 724 dbSNP
rs144174877 726 dbSNP
rs571149826 730 dbSNP
rs960677166 735 dbSNP
rs558590211 747 dbSNP
rs1275680314 754 dbSNP
rs919391405 756 dbSNP
rs1311003466 762 dbSNP
rs1036535872 770 dbSNP
rs374009875 772 dbSNP
rs1241941438 786 dbSNP
rs944750997 792 dbSNP
rs1461381203 796 dbSNP
rs911994924 801 dbSNP
rs1245885624 802 dbSNP
rs1005011590 817 dbSNP
rs1168333615 825 dbSNP
rs986650419 826 dbSNP
rs953389582 829 dbSNP
rs1421420457 831 dbSNP
rs182129505 832 dbSNP
rs915260560 834 dbSNP
rs756958398 835 dbSNP
rs1318775101 840 dbSNP
rs1364780248 841 dbSNP
rs1431901006 844 dbSNP
rs570007655 852 dbSNP
rs539899844 856 dbSNP
rs956623396 857 dbSNP
rs1272239359 858 dbSNP
rs1263474388 862 dbSNP
rs1220636595 863 dbSNP
rs1264319224 863 dbSNP
rs1323609548 864 dbSNP
rs754092463 865 dbSNP
rs111633881 867 dbSNP
rs900751538 877 dbSNP
rs774597322 885 dbSNP
rs1295098327 886 dbSNP
rs1216699910 890 dbSNP
rs550948040 898 dbSNP
rs1193497046 899 dbSNP
rs368181251 904 dbSNP
rs764283714 905 dbSNP
rs970995784 906 dbSNP
rs1387340534 927 dbSNP
rs1023365217 938 dbSNP
rs1457773681 942 dbSNP
rs1012448858 944 dbSNP
rs575682228 945 dbSNP
rs1167792820 954 dbSNP
rs1048099516 959 dbSNP
rs1464474975 970 dbSNP
rs566352411 983 dbSNP
rs995049651 984 dbSNP
rs1200238927 987 dbSNP
rs1348442720 992 dbSNP
rs548153379 992 dbSNP
rs979227995 995 dbSNP
rs1284449347 997 dbSNP
rs532743406 1001 dbSNP
rs565489233 1004 dbSNP
rs1036505733 1018 dbSNP
rs944881332 1026 dbSNP
rs549799749 1029 dbSNP
rs1227114010 1032 dbSNP
rs1285860819 1033 dbSNP
rs890644670 1034 dbSNP
rs189862805 1035 dbSNP
rs1050532950 1043 dbSNP
rs557314766 1044 dbSNP
rs915204437 1047 dbSNP
rs960671118 1050 dbSNP
rs140409361 1051 dbSNP
rs1004558987 1054 dbSNP
rs951766132 1058 dbSNP
rs561073906 1068 dbSNP
rs935218310 1070 dbSNP
rs900698842 1079 dbSNP
rs1160499473 1084 dbSNP
rs1488713619 1091 dbSNP
rs923846377 1094 dbSNP
rs1196708988 1101 dbSNP
rs568364945 1104 dbSNP
rs1304079489 1118 dbSNP
rs1367882525 1125 dbSNP
rs1317151275 1132 dbSNP
rs1328785411 1138 dbSNP
rs970583785 1139 dbSNP
rs1257517159 1147 dbSNP
rs1019122468 1156 dbSNP
rs765996273 1161 dbSNP
rs1328270682 1162 dbSNP
rs1299511463 1163 dbSNP
rs1009538180 1174 dbSNP
rs186973964 1175 dbSNP
rs1053496908 1181 dbSNP
rs542239176 1185 dbSNP
rs571755745 1190 dbSNP
rs1249804291 1191 dbSNP
rs947877342 1192 dbSNP
rs534161263 1219 dbSNP
rs1464535636 1221 dbSNP
rs544914493 1224 dbSNP
rs939230892 1233 dbSNP
rs1387403783 1239 dbSNP
rs546896504 1239 dbSNP
rs993848594 1243 dbSNP
rs1174944791 1247 dbSNP
rs1391445434 1250 dbSNP
rs1330259717 1252 dbSNP
rs951715583 1258 dbSNP
rs146653497 1261 dbSNP
rs1015167597 1262 dbSNP
rs1225987638 1278 dbSNP
rs1250660538 1281 dbSNP
rs1339938789 1285 dbSNP
rs1009605089 1290 dbSNP
rs150481428 1291 dbSNP
rs1009077355 1300 dbSNP
rs892036082 1302 dbSNP
rs1031964473 1312 dbSNP
rs890623685 1312 dbSNP
rs1197453142 1313 dbSNP
rs904561378 1318 dbSNP
rs1051033773 1322 dbSNP
rs143186717 1331 dbSNP
rs1254275012 1334 dbSNP
rs1232845914 1338 dbSNP
rs774800763 1348 dbSNP
rs1305883792 1353 dbSNP
rs74156587 1362 dbSNP
rs1380191542 1374 dbSNP
rs771333401 1375 dbSNP
rs1294535403 1376 dbSNP
rs1326808393 1378 dbSNP
rs749559842 1405 dbSNP
rs1261240551 1411 dbSNP
rs1322907272 1416 dbSNP
rs1330210449 1418 dbSNP
rs1393599961 1422 dbSNP
rs1463676691 1437 dbSNP
rs576441686 1456 dbSNP
rs1056692380 1459 dbSNP
rs939237724 1469 dbSNP
rs555072558 1473 dbSNP
rs1197355254 1482 dbSNP
rs907765074 1495 dbSNP
rs1479807106 1499 dbSNP
rs982042619 1506 dbSNP
rs1434960330 1508 dbSNP
rs1407698737 1519 dbSNP
rs949336721 1520 dbSNP
rs1245396318 1521 dbSNP
rs772570216 1527 dbSNP
rs773611514 1533 dbSNP
rs7074014 1534 dbSNP
rs930557782 1535 dbSNP
rs1383771383 1545 dbSNP
rs1281264582 1551 dbSNP
rs1344854511 1557 dbSNP
rs920232685 1562 dbSNP
rs73365159 1563 dbSNP
rs952468108 1575 dbSNP
rs548068929 1587 dbSNP
rs972501886 1600 dbSNP
rs1364137955 1611 dbSNP
rs961032054 1613 dbSNP
rs1268772891 1616 dbSNP
rs868070790 1617 dbSNP
rs12146169 1625 dbSNP
rs1430717831 1633 dbSNP
rs1009110008 1645 dbSNP
rs143969072 1647 dbSNP
rs1254187008 1650 dbSNP
rs1029132126 1674 dbSNP
rs1301007737 1675 dbSNP
rs41292608 1692 dbSNP
rs968961583 1693 dbSNP
rs1304896862 1699 dbSNP
rs191533658 1706 dbSNP
rs1371263650 1711 dbSNP
rs772778102 1715 dbSNP
rs1307941640 1719 dbSNP
rs1053794839 1723 dbSNP
rs1244084727 1724 dbSNP
rs186634670 1733 dbSNP
rs1490619433 1740 dbSNP
rs1225349600 1748 dbSNP
rs1012903665 1749 dbSNP
rs895884074 1759 dbSNP
rs1176169841 1761 dbSNP
rs1250637583 1768 dbSNP
rs35511341 1772 dbSNP
rs999598669 1773 dbSNP
rs1161293957 1782 dbSNP
rs1384318829 1785 dbSNP
rs1057239851 1786 dbSNP
rs1165390769 1790 dbSNP
rs1280465993 1794 dbSNP
rs745828129 1795 dbSNP
rs1441539426 1806 dbSNP
rs1298772525 1807 dbSNP
rs1375624886 1825 dbSNP
rs1241816942 1834 dbSNP
rs1450649120 1843 dbSNP
rs1314698322 1847 dbSNP
rs1339163333 1854 dbSNP
rs80131380 1855 dbSNP
rs1046833646 1858 dbSNP
rs886242874 1861 dbSNP
rs1414934438 1863 dbSNP
rs1047612065 1866 dbSNP
rs1296015569 1867 dbSNP
rs1242225486 1875 dbSNP
rs879417776 1876 dbSNP
rs149821502 1877 dbSNP
rs1160015015 1878 dbSNP
rs1055079853 1880 dbSNP
rs931117622 1881 dbSNP
rs919798876 1884 dbSNP
rs753645616 1886 dbSNP
rs1188529543 1888 dbSNP
rs1475605013 1893 dbSNP
rs139926295 1897 dbSNP
rs1468358368 1904 dbSNP
rs1214764790 1905 dbSNP
rs756343573 1908 dbSNP
rs911615302 1909 dbSNP
rs912204887 1920 dbSNP
rs986883804 1926 dbSNP
rs1268743395 1931 dbSNP
rs1215613898 1937 dbSNP
rs11195831 1944 dbSNP
rs111357154 1945 dbSNP
rs190727802 1946 dbSNP
rs1284141302 1950 dbSNP
rs1284162170 1953 dbSNP
rs955997018 1961 dbSNP
rs186260616 1967 dbSNP
rs1211839491 1969 dbSNP
rs1394731584 1973 dbSNP
rs1297985305 1977 dbSNP
rs759546070 1995 dbSNP
rs182022403 1996 dbSNP
rs978904216 1997 dbSNP
rs958192386 1999 dbSNP
rs752075688 2000 dbSNP
rs1187031981 2002 dbSNP
rs1425736332 2011 dbSNP
rs569693955 2014 dbSNP
rs999526591 2015 dbSNP
rs1832712 2018 dbSNP
rs1406958517 2019 dbSNP
rs536753266 2021 dbSNP
rs1316518252 2027 dbSNP
rs73365158 2039 dbSNP
rs1013992117 2046 dbSNP
rs554228197 2047 dbSNP
rs1458811904 2050 dbSNP
rs1368004426 2051 dbSNP
rs776591231 2052 dbSNP
rs895173125 2053 dbSNP
rs1036114237 2058 dbSNP
rs1403437762 2059 dbSNP
rs1004275304 2060 dbSNP
rs1389721012 2065 dbSNP
rs1165595922 2069 dbSNP
rs1462916444 2071 dbSNP
rs539304546 2072 dbSNP
rs144051314 2073 dbSNP
rs140201994 2075 dbSNP
rs994704943 2080 dbSNP
rs899081419 2082 dbSNP
rs1489827369 2084 dbSNP
rs1242977898 2089 dbSNP
rs919726887 2092 dbSNP
rs1036882190 2093 dbSNP
rs529717298 2107 dbSNP
rs759412272 2108 dbSNP
rs1479083558 2130 dbSNP
rs1157043875 2132 dbSNP
rs912283835 2140 dbSNP
rs1195549174 2144 dbSNP
rs113588378 2146 dbSNP
rs1300384727 2155 dbSNP
rs188105821 2160 dbSNP
rs986589148 2161 dbSNP
rs943018330 2167 dbSNP
rs763510682 2183 dbSNP
rs1337497900 2184 dbSNP
rs1255619388 2189 dbSNP
rs1345587066 2189 dbSNP
rs1217555939 2190 dbSNP
rs920973367 2197 dbSNP
rs974931988 2201 dbSNP
rs958285326 2202 dbSNP
rs1032449079 2206 dbSNP
rs1362003241 2212 dbSNP
rs1224020245 2213 dbSNP
rs1287807327 2215 dbSNP
rs1271621115 2217 dbSNP
rs1221641922 2219 dbSNP
rs1433793346 2219 dbSNP
rs934389802 2220 dbSNP
rs567858789 2222 dbSNP
rs184631230 2223 dbSNP
rs1443035355 2226 dbSNP
rs1470612347 2227 dbSNP
rs181208456 2227 dbSNP
rs1424501070 2228 dbSNP
rs145414051 2228 dbSNP
rs756974286 2228 dbSNP
rs566098641 2232 dbSNP
rs1164738563 2234 dbSNP
rs1013711565 2243 dbSNP
rs991726875 2244 dbSNP
rs770172594 2260 dbSNP
rs189941543 2263 dbSNP
rs573196130 2264 dbSNP
rs1311077673 2270 dbSNP
rs1380306283 2273 dbSNP
rs562635874 2277 dbSNP
rs1252767900 2281 dbSNP
rs1194592500 2292 dbSNP
rs1470095063 2296 dbSNP
rs1236928979 2301 dbSNP
rs555268982 2307 dbSNP
rs951486936 2313 dbSNP
rs1180739356 2315 dbSNP
rs995386847 2316 dbSNP
rs1241574842 2322 dbSNP
rs1274454323 2329 dbSNP
rs1217123474 2334 dbSNP
rs1027112470 2335 dbSNP
rs1184540387 2339 dbSNP
rs760421754 2345 dbSNP
rs1460854819 2348 dbSNP
rs899029158 2351 dbSNP
rs1346634524 2356 dbSNP
rs544531942 2360 dbSNP
rs1395122679 2364 dbSNP
rs779727866 2366 dbSNP
rs1236301360 2367 dbSNP
rs536233589 2368 dbSNP
rs561923065 2369 dbSNP
rs773846869 2373 dbSNP
rs1442770111 2381 dbSNP
rs75150782 2382 dbSNP
rs1051279540 2387 dbSNP
rs1330901419 2389 dbSNP
rs1225080529 2394 dbSNP
rs932426603 2402 dbSNP
rs1051403940 2403 dbSNP
rs920889367 2407 dbSNP
rs1200656011 2417 dbSNP
rs1261365939 2417 dbSNP
rs1394767058 2422 dbSNP
rs1174465488 2423 dbSNP
rs1455893406 2424 dbSNP
rs1204546842 2430 dbSNP
rs572586320 2433 dbSNP
rs1258628916 2434 dbSNP
rs989793461 2435 dbSNP
rs1374190701 2437 dbSNP
rs1477851937 2437 dbSNP
rs559477400 2437 dbSNP
rs796655462 2437 dbSNP
rs934356241 2437 dbSNP
rs936896688 2437 dbSNP
rs769392415 2438 dbSNP
rs554340533 2439 dbSNP
rs1042815814 2440 dbSNP
rs1317526769 2440 dbSNP
rs947151117 2440 dbSNP
rs545418725 2442 dbSNP
rs185043360 2443 dbSNP
rs1485058008 2450 dbSNP
rs938910339 2451 dbSNP
rs1204969319 2457 dbSNP
rs147448361 2462 dbSNP
rs1489536124 2466 dbSNP
rs1197898304 2480 dbSNP
rs1236008211 2484 dbSNP
rs1479858662 2493 dbSNP
rs1176329777 2499 dbSNP
rs982799165 2511 dbSNP
rs538535465 2519 dbSNP
rs1157740319 2520 dbSNP
rs1027060078 2530 dbSNP
rs1025177256 2534 dbSNP
rs1305970891 2539 dbSNP
rs974127507 2542 dbSNP
rs1224276481 2544 dbSNP
rs964143140 2546 dbSNP
rs949514897 2547 dbSNP
rs1303653579 2554 dbSNP
rs1315306494 2556 dbSNP
rs1238647738 2566 dbSNP
rs992620243 2568 dbSNP
rs1375367342 2571 dbSNP
rs1356311733 2574 dbSNP
rs1282341990 2576 dbSNP
rs541353066 2580 dbSNP
rs1129555 2587 dbSNP
rs573612013 2593 dbSNP
rs770815801 2594 dbSNP
rs995491773 2602 dbSNP
rs1268879871 2606 dbSNP
rs1416869956 2608 dbSNP
rs143030419 2617 dbSNP
rs1158767477 2632 dbSNP
rs1360224601 2635 dbSNP
rs1161560746 2636 dbSNP
rs1364941189 2639 dbSNP
rs566210489 2654 dbSNP
rs1015515850 2661 dbSNP
rs1410894065 2667 dbSNP
rs1295326911 2668 dbSNP
rs1371286619 2669 dbSNP
rs1180589025 2670 dbSNP
rs1004165376 2676 dbSNP
rs148320794 2687 dbSNP
rs1379569533 2689 dbSNP
rs1244288023 2691 dbSNP
rs1291529265 2693 dbSNP
rs1042722499 2694 dbSNP
rs1212612787 2697 dbSNP
rs143310288 2704 dbSNP
rs1266635093 2706 dbSNP
rs1479402791 2712 dbSNP
rs1177618264 2737 dbSNP
rs1238446243 2744 dbSNP
rs894235117 2746 dbSNP
rs1259939188 2748 dbSNP
rs1181475183 2753 dbSNP
rs1264830211 2762 dbSNP
rs1216305222 2766 dbSNP
rs932369319 2767 dbSNP
rs1287704876 2776 dbSNP
rs1232554303 2784 dbSNP
rs899594636 2791 dbSNP
rs1461605123 2803 dbSNP
rs1293915622 2806 dbSNP
rs1054162633 2815 dbSNP
rs756301721 2820 dbSNP
rs1314719253 2823 dbSNP
rs752850927 2825 dbSNP
rs192198678 2826 dbSNP
rs777452140 2833 dbSNP
rs368048637 2836 dbSNP
rs1454672770 2839 dbSNP
rs918041851 2840 dbSNP
rs1347295616 2854 dbSNP
rs930227142 2856 dbSNP
rs189286738 2857 dbSNP
rs375083675 2868 dbSNP
rs974072104 2872 dbSNP
rs1236628232 2873 dbSNP
rs184906001 2873 dbSNP
rs1183523128 2886 dbSNP
rs1417346640 2893 dbSNP
rs911330642 2901 dbSNP
rs959833424 2906 dbSNP
rs926673771 2908 dbSNP
rs1030176662 2911 dbSNP
rs1476547111 2919 dbSNP
rs1336388715 2929 dbSNP
rs998704503 2932 dbSNP
rs974192217 2934 dbSNP
rs1186712339 2949 dbSNP
rs1486738929 2957 dbSNP
rs1361808090 2964 dbSNP
rs752923967 2965 dbSNP
rs1219819374 2966 dbSNP
rs1263417667 2979 dbSNP
rs962694660 2981 dbSNP
rs1015609412 2988 dbSNP
rs1004497816 2995 dbSNP
rs192661371 3008 dbSNP
rs748960873 3009 dbSNP
rs1277561131 3015 dbSNP
rs1021209284 3021 dbSNP
rs1212036120 3024 dbSNP
rs1240172812 3029 dbSNP
rs1011228782 3040 dbSNP
rs1194317684 3047 dbSNP
rs1265409963 3052 dbSNP
rs1274965621 3053 dbSNP
rs76880336 3056 dbSNP
rs1172179083 3057 dbSNP
rs899700700 3068 dbSNP
rs528341978 3069 dbSNP
rs1344981305 3074 dbSNP
rs1382939454 3079 dbSNP
rs866752662 3088 dbSNP
rs1401085011 3089 dbSNP
rs1054132015 3090 dbSNP
rs1055973931 3098 dbSNP
rs1341830325 3103 dbSNP
rs560561083 3107 dbSNP
rs902824524 3110 dbSNP
rs545527764 3112 dbSNP
rs1345227526 3118 dbSNP
rs1220602534 3124 dbSNP
rs1047246689 3130 dbSNP
rs1041369676 3133 dbSNP
rs149509002 3134 dbSNP
rs920184056 3135 dbSNP
rs1489872833 3137 dbSNP
rs1395926446 3140 dbSNP
rs115766003 3151 dbSNP
rs751654908 3152 dbSNP
rs766448696 3155 dbSNP
rs878940430 3157 dbSNP
rs1460060834 3159 dbSNP
rs187529556 3159 dbSNP
rs942718172 3160 dbSNP
rs1175716096 3162 dbSNP
rs763415219 3168 dbSNP
rs1371949554 3174 dbSNP
rs1420763526 3182 dbSNP
rs1170750023 3183 dbSNP
rs1364310437 3190 dbSNP
rs56100440 3191 dbSNP
rs569201979 3192 dbSNP
rs555670158 3211 dbSNP
rs1438147893 3212 dbSNP
rs911295589 3217 dbSNP
rs534121135 3221 dbSNP
rs962789959 3231 dbSNP
rs908519667 3237 dbSNP
rs982817056 3238 dbSNP
rs566762431 3244 dbSNP
rs955502392 3253 dbSNP
rs955586917 3256 dbSNP
rs73365151 3259 dbSNP
rs878965971 3260 dbSNP
rs1453458698 3262 dbSNP
rs963839586 3271 dbSNP
rs967257623 3288 dbSNP
rs1021534763 3292 dbSNP
rs182934290 3293 dbSNP
rs1479709473 3296 dbSNP
rs377593757 3298 dbSNP
rs958645779 3306 dbSNP
rs1228428700 3311 dbSNP
rs1309421939 3314 dbSNP
rs1390816174 3315 dbSNP
rs902961855 3319 dbSNP
rs192577378 3320 dbSNP
rs1372140548 3331 dbSNP
rs374509110 3334 dbSNP
rs906956619 3336 dbSNP
rs994372630 3340 dbSNP
rs1395152154 3343 dbSNP
rs1194206115 3346 dbSNP
rs768084330 3349 dbSNP
rs1257532787 3350 dbSNP
rs1458355264 3359 dbSNP
rs1200770644 3361 dbSNP
rs1298194409 3362 dbSNP
rs898747979 3363 dbSNP
rs796813824 3369 dbSNP
rs188294837 3374 dbSNP
rs535137558 3378 dbSNP
rs1392957715 3384 dbSNP
rs1474725967 3386 dbSNP
rs540081581 3392 dbSNP
rs371598317 3393 dbSNP
rs938268744 3401 dbSNP
rs1465768980 3406 dbSNP
rs1333021734 3410 dbSNP
rs1399792829 3411 dbSNP
rs926737772 3412 dbSNP
rs1038561963 3417 dbSNP
rs546958313 3418 dbSNP
rs911188814 3429 dbSNP
rs775293412 3439 dbSNP
rs1277577112 3445 dbSNP
rs80029816 3446 dbSNP
rs933998269 3453 dbSNP
rs374082485 3461 dbSNP
rs922632684 3462 dbSNP
rs1249923571 3467 dbSNP
rs35347280 3478 dbSNP
rs1201340492 3487 dbSNP
rs975316532 3491 dbSNP
rs963936075 3494 dbSNP
rs1445710246 3499 dbSNP
rs1193589421 3500 dbSNP
rs1032776912 3501 dbSNP
rs1310854097 3502 dbSNP
rs978581918 3514 dbSNP
rs138008636 3534 dbSNP
rs551878420 3535 dbSNP
rs1481655082 3541 dbSNP
rs1172909678 3543 dbSNP
rs1020027496 3550 dbSNP
rs533484707 3572 dbSNP
rs562879042 3580 dbSNP
rs1349089356 3588 dbSNP
rs989998168 3589 dbSNP
rs759235454 3593 dbSNP
rs1237543177 3595 dbSNP
rs1014461348 3616 dbSNP
rs1299310708 3618 dbSNP
rs895445659 3622 dbSNP
rs762656861 3626 dbSNP
rs544574670 3628 dbSNP
rs1034394045 3633 dbSNP
rs1258073020 3635 dbSNP
rs1352039932 3650 dbSNP
rs1373076890 3683 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BAC
Disease MIMAT0019014
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020023. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020023
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BAC / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000348367.4 | 3UTR | UUGGCCAGAAAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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