miRTarBase - #MIRT497481


—
pre-miRNA Information
pre-miRNA hsa-mir-2116   
Genomic Coordinates chr15: 59171183 - 59171262
Description Homo sapiens miR-2116 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2116-3p
Sequence 51| CCUCCCAUGCCAAGAACUCCC |71
Evidence Experimental
Experiments 454
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1430163932 6 dbSNP
rs1324784743 11 dbSNP
rs760704373 13 dbSNP
rs1192420838 17 dbSNP
rs200944241 19 dbSNP
rs775077996 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol XPR1   
Synonyms IBGC6, SLC53A1, SYG1, X3
Description xenotropic and polytropic retrovirus receptor 1
Transcript NM_001135669   
Other Transcripts NM_004736   
Expression
Putative miRNA Targets on XPR1
3'UTR of XPR1
(miRNA target sites are highlighted)		 
>XPR1|NM_001135669|3'UTR
   1 ATTTTCTGAAGTCTAGCTTAACATCTTTGGTTTTCCTACTCTACAATCCTTTCCTCGACCAACGCAACCTCTAGTACCTT
  81 TCCAGCCGAAAACAGGAGAAAACACATAACACATTTTCCGAGCTCTTCCGGATCGGATCCTATGGACTCCAAACAAGCTC
 161 ACTGTGTTTCTTTTCTTTTCTTCTGGTTTAATTTTAATTTTCTATTTTCAAAACAAATATTTACTTCATTTGCCAATCAG
 241 AGGATGTTTTAAGAAACAAAACATAGTATCTTATGGATTGTTTACAATCACAAGGACATAGATACCTATCAGGATGAAGA
 321 ACAGGCATTGCAAGGACCCTCTGATGGGACGGTACTGAGATATCTCGGCTTCCGCTCAGCCCGGTTTTGACTGGTTGAAA
 401 CCGGACATTGGTTTTTAAATTTTTTGTCAGTTTATGTGGAGAATTTTTTTCTTTCCTTCATACCCAGCGCAAAGGCACTG
 481 GCCGCACTTGCAGGAAAAGTGCAACTTAAAGCAGTACCTTCATTCATGAAGCTACTTTTTAATTTGATGTAACTTTTCTT
 561 ATTTTGGGAAGGGTTGCTGGGTGGGTGGGAAATATGATGTATTTGTTACACATAGTTTTCTCATTATTTATGAAACTTAA
 641 CCATACAGAATGATATAACTCCTGTGCAATGAAGGTGATAACAGTAAAAGAAGGCAGGGGAAACTTACGTTGGATGACAT
 721 TTATGAGGGTCAGTCCCACATACCTCTTTCAGGAGACAACTTGCACCAGTTTGACCTTTTCTTTTCTTTGTTTTTATTTT
 801 AAGCCAAAGTTTCATTGCTAACTTCTTAAGTTGCTGCTGCTTTAGAGTCCTGAGCATATCTCTCATAACAAGGAATCCCA
 881 CACTTCACACCACCGGCTGAATTTCATGGAAGAGGTTCTGATAATTTTTTTAACTTTTTAAGGAACAGATGTGGAATACA
 961 CTGGCCCATATTTCAACCTTAACAGCTGAAGCTATGCCTTATTATGCATCCACATGTATGGTCCCTGTAGCGTGACCTTT
1041 ACTAGCTCTGAATCAGAAGACAGAGCTATTTCAGAGGCTCTGTGTGCCCTCACTAGATAGTTTTTCTTCTGGGTTCAACC
1121 ACTTTAGCCAGAATTTGATCAAATTAAAAGTCTGTCATGGGGAAACTATATTTTTGAGCACATGGAACAAATTATACTTC
1201 CTCATTCATATTATGTTGATACAAAAGACCTTGGCAGCCATTTCTCCCAGCAGTTTTAAAGGATGAACATTGGATTTCAT
1281 GCCATCCCATAGAAAACCTGTTTTAAAATTTTAGGGATCTTTACTTGGTCATACATGAAAAGTACACTGCTTAGAAATTA
1361 TAGACTATTATGATCTGTCCACAGTGCCCATTGTCACTTCTTTGTCTCATTTCTTCCCTTTGTTCCTTAGTCATCCAAAT
1441 AAGCCTGAAAACCATAAGAGATATTACTTTATTGAATATGGTTGGCATTAAATTTAGCATTTCATTATCTAACAAAATTA
1521 ATATAAATTCCAGGACATGGTAAAATGTGTTTTAATAACCCCCAGACCCAAATGAAAATTTCAAAGTCAATACCAGCAGA
1601 TTCATGAAAGTAAATTTAGTCCTATAATTTTCAGCTTAATTATAAACAAAGGAACAAATAAGTGGAAGGGCAGCTATTAC
1681 CATTCGCTTAGTCAAAACATTCGGTTACTGCCCTTTAATACACTCCTATCATCAGCACTTCCACCATGTATTACAAGTCT
1761 TGACCCATCCCTGTCGTAACTCCAGTAAAAGTTACTGTTACTAGAAAATTTTTATCAATTAACTGACAAATAGTTTCTTT
1841 TTAAAGTAGTTTCTTCCATCTTTATTCTGACTAGCTTCCAAAATGTGTTCCCTTTTTGAATCGAGGTTTTTTTGTTTTGT
1921 TTTGTTTTCTGAAAAAATCATACAACTTTGTGCTTCTATTGCTTTTTTGTGTTTTGTTAAGCATGTCCCTTGGCCCAAAT
2001 GGAAGAGGAAATGTTTAATTAATGCTTTTTAGTTTAAATAAATTGAATCATTTATAATAATCAGTGTTAACAATTTAGTG
2081 ACCCTTGGTAGGTTAAAGGTTGCATTATTTATACTTGAGATTTTTTTCCCCTAACTATTCTGTTTTTTGTACTTTAAAAC
2161 TATGGGGGAAATATCACTGGTCTGTCAAGAAACAGCAGTAATTATTACTGAGTTAAATTGAAAAGTCCAGTGGACCAGGC
2241 ATTTCTTATATAAATAAAATTGGTGGTACTAATGTGTATCCAGAGACATTTGAATTATTAACTTTATTCTTTATTAGTGA
2321 ATCTCTATGATGGCACACATAAAATCTTACAGTTGACTTCTGCTGTTTGAATTCCCCAGTGTTTTTACATTAATGTATCC
2401 TATGGCCAGTTTAGTCTTTCTTCAACTGTTACAGTTCTAGGCCCTAATCGGTCTTATTCTTTCACATATGATGCAATGAT
2481 AGATGTAATCCTTTTCTGAAGTGTTTGTCGGATTGGCATAGTCTATTCAAAAATAAGGCTTATGTAACTTTCAGCTTGCT
2561 ATGTGACAGAAGTTTAAATGTGTATTTAAGTACACAGCTTTATGTTCCTCTTAAAGCTGTAAAGAGAAAAGAGGACTTTT
2641 CCTCATCAAGAGAGCTTGGGAGACAAAGCATACATTTAATTTTTTTCTTTCAAAAAAGGCAATGTGCACTTTCCTCTCCT
2721 AAATTTTATATGCCCTAGCAGTTGCGAATGTTGTGTCCACCTTACAATTTGATTGGAGGCTCCCATACACTGAAACTCTC
2801 AATAGAATTCTTAAAAATGAACATCAGCTGGGCGCAGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGG
2881 GCAGATCACGAGCTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAG
2961 CTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGACTGAGGCAGGAGAATTGCTTAAACCTGGGAAGCAGA
3041 GGTTGCAGTGAGACTAGATCATGCCACTGCACTCCACTGCCACTGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAACA
3121 AACAAAAAAAATCACAGACTCATTTTAAAGGAGCAGCAACCTAACCAAATACAAACTTCATTTGATTTTAGGTTTAGAAA
3201 TTCTAGTTTTATTTTGGAGAATCACTCAGTTTTTAATATCAATTAAAATAGTCCTCAAAGGAATGAAGAGGAAGTCTAAA
3281 TAAATGAATAAAACTCATTTTTCATTTTATGGTAGTATAGAAAGCATTGATGTGTGTAGAGAAATTAAAAGACAAGAGTG
3361 GTTTACTGTCTATGCACAAATGAGTGCCTATATTTAAGGCTGCCTATACCATTACAGTGGCGTAATTGGTGATTTCATAG
3441 CATACAGAGAAACAATGAAATCAAAGATTAAATCATTAGGTTATGATGGTCATTTGTAAGATTGGAAAGTAGTCAAAAAC
3521 CCATGTGCAACTTTTTTTCAGCACTCTACCATTAGGCTCCTTAGGCAAGCTGCTTAACTTCCGTCAGAAGCAAAGGTGTG
3601 GGAGAACACCATTCACCTCAGTAGTAACTTATAAAAACCGTTTAAAGAAGGAAAATGGGCCCCAGCCCCTAGGATCCCTG
3681 ACTTCCTGATATTCTAAACATGAGAGTTCTGTGACTTTAACTGAGCTCTTTACCAGAAGTAACGTGTTGATGTATATTAT
3761 CTTTCCACCATGCTTTGACCAAAGTACATTCACAGTAACTAGAGAAAGCAGATCATCCATTTCTGGATAGGTGAACTACG
3841 GCAAGGTAAGAACAGAAAAAAGTAAAGTAGTATTGAGTCATGCAGGTATCAGATTAACAGACATTCATTGAAGATAAGTG
3921 AAATAACTTTGGAGATAGCAGAGAAGAGCAAGAAGATGTTGGACGTTGGCAGTAAGCCGCAGCAAGGCAGTTAGGAAAGT
4001 ACGTGAGCCTGATGACGCGAAGGTGATGCCTCCATCTGTCCGCTTAGTGGTTATTAAATTGCTGGGAAAGACCTGCCTTT
4081 ATTTTCCTATCATCTTTTCCCCATTACTTTGCATTATTCAGGAAATAATTATTTATTCCCAAATGCAGTTTTCTAAGCAG
4161 TGACCACAAAAATTTCTTATTCTAAGGAAAATAATTAAGAAAATAACCCTATCTGTGGCATTGTTTTAAAATGTGGGATA
4241 CAAATCTGGTAAGCAGATTTCAGGTCATTATTGTTTTCTTTTAATGGTTTACATGAAATTTTCCTCTCAAAAAACAAGTA
4321 CCTCTTACTGTATAACATTTGAGTTTTTAAAATTGAGATAGCTTCTGAGAGAAAAAAAGAAAGTTGAATTTGTAGCTCTC
4401 TCAACTACAAAATCACCACACTTTTCTCAAATCTAATAGGAATTCAGTGTCATTACAGATACGGTCTCTAGTGACCAGGT
4481 GAAGACAATTGAAGCTTTGGTAGAACTTCTGCAAAAGTTAGGTAAAGAAGAATAAATCCAATTTATCAGCTTTGTTCATA
4561 TTCTTTTTCTGAGTGATCTAAATTTTTCTTGCTTGTGATCATTAGCTAAGACAAGGAGTGTTAAAGGTTTTCTAAATGCA
4641 AACACATACGTTTCTGCATTTCAGAAGTCAGTCTTGATAGTAAATCCTACAAACTCTCAACTTTCTGCATTGTATTTTAA
4721 GTCTATACAATGTTAGAGCACATGGTAATGTGGGACAGAGTTGATTATATGATAGCATGAGAAATTTGCACTGGTTGGTG
4801 TTACAAACCAATGATCTAACCAGCATACTCTCCAAATATGAAAAAGTAAAAACATCTCATTAGGTTTGGAAGAGCCTAAG
4881 GTAGTCCATACAGGAAGTTTGCCTGAGAACAGAGAGGAGCCTGTTGATTGGCATGGCTCATGATGCCTTTCTTGTATGAA
4961 TTATCAAAACTGATACTGAGTTGCCCCTAGAAAACAGCCTTCCAGAATATGTTTGCTTATTTATGGTGGAAGAGGAAGTG
5041 AGAACAAGATGAGAGTTTCCCTTAAAGTGAGGAGAATCATTATACAACTTTGCAACTGAAGTATGTTTCCTTGTAGCAAA
5121 CCTTTGGTTTATTTTATCGTCAAATCAAAGCCACCCTCAGTTTTTTGTATGGTGCCATCAACCTAAGGAGGACAATCAAA
5201 TAACCTATTGTTTGCCTTGGATTCAGTATATCTACTAAGTACACAGTCTCGTATACCTTCAAACCAGTTACTTGACTAAA
5281 CTTCCACCATATTACCTTAGTTCTTCCTATGCCCTTTCCTCTGTGCCACCACAAATCAGAGGGAAAGACTGCAGTACTTC
5361 TAGAAAGTTGTGGACTTCTAAGAAAGAGCCAGGCTTCCATCTCACTATCCCTTGATCATTATCTCTGAAGTCCCTACCTG
5441 CACTTCCCTGATTGCCCTGTAGCAACACCAGCATGGTGGGAATTGGAGGGAAAGATTGTGGAAAATCCCTAAAGGGTCAT
5521 TGTTCATGACGTTATTTTGAATTGTAAAATTGTGAGCCACTCACATTTCAATTACAAAAAGAACAGAACTCTTAATCACG
5601 TTGTGAAGATTAATTTCTTGCCATTTTCTGGATTAGCACAGAAGCTTGTATCAATGAAGAGTATTTAGGAGGGGAATAGG
5681 GGGAAAATTGTATTTTTCTGTTCAAACTCTCTCCTTCTATTTGTGTTTCCTTCACCCCTCTCCCTCCACCACACTGTGTT
5761 GGTCAAATGATACTATTCTATGAAACCCTGAGCTATAGTTGTCAAAAGTAACTATGGATTGTGATTAGTCCTCTGTGGGT
5841 GCTTCCTTCCCTCTTTTTTCTCCCTCACTCTCTTTCTCAGTCTCCACTCTGGTAAATGGAAAAGGTGATGTCGAAGAATT
5921 GATGCTTGCTTGGACTCATGTTGTATCTGTGACTATGCTATTAGCTGTCTCCTTTTTCCTTCCTATATGGGTAGAATTCT
6001 TATGACTTATGAAGTTCCCTTCTTGATAAGTAGGTTAAATGCACAATGTGGTACTGTTTTATAGTTTCTAGATGGTTGTA
6081 TAAAGCAAAAAGTTAATGTGGTTATGTGTTTTTAAAGAAAATAAGTGATTGGTCACTAAACTCTGTCCTTTTTTCATTAT
6161 TACAATTTCTCTCTGTTTTCCAACAGTTTGCTGACTCCTTTGTCACTGGTGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cccucaagaaCCGUACCCUCc 5'
                    ||::|||||| 
Target 5' cagaagcaaaGGTGTGGGAGa 3'
 3585 - 3605 135.00 -13.90
2 
miRNA  3' cccuCAAGAA----CCGUACCCUCc 5'
              || |||      :|||||:| 
Target 5' ttttGTACTTTAAAACTATGGGGGa 3'
 2145 - 2169 127.00 -10.80
3 
miRNA  3' ccCUCAA-GAACCG--UACCCUcc 5'
            |:||| || ||:  :|||||  
Target 5' aaGGGTTGCTGGGTGGGTGGGAaa 3'
 569 - 592 125.00 -18.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN29968955 16 COSMIC
COSN31590534 25 COSMIC
COSN31585521 26 COSMIC
COSN30487675 36 COSMIC
COSN30521194 40 COSMIC
COSN30106584 42 COSMIC
COSN31558372 46 COSMIC
COSN4745289 58 COSMIC
COSN24381246 64 COSMIC
COSN30451553 79 COSMIC
COSN30475193 84 COSMIC
COSN8636953 85 COSMIC
COSN28196266 87 COSMIC
COSN31604182 89 COSMIC
COSN31604387 130 COSMIC
COSN24572887 140 COSMIC
COSN31571298 302 COSMIC
COSN6431064 518 COSMIC
COSN25844619 613 COSMIC
COSN6431065 614 COSMIC
COSN22592552 653 COSMIC
COSN31487898 1032 COSMIC
COSN31489737 1172 COSMIC
COSN20090417 1445 COSMIC
COSN6010741 1766 COSMIC
COSN16902255 2328 COSMIC
COSN29696658 2562 COSMIC
COSN16752145 2844 COSMIC
COSN24766168 2890 COSMIC
COSN1415899 3096 COSMIC
COSN22616599 3130 COSMIC
COSN32056031 3557 COSMIC
COSN1415900 3933 COSMIC
COSN21703523 3987 COSMIC
COSN27327408 4132 COSMIC
COSN18723805 4347 COSMIC
COSN18723867 4364 COSMIC
COSN16430538 4423 COSMIC
COSN16808669 4463 COSMIC
COSN26697794 4503 COSMIC
COSN23128238 5028 COSMIC
COSN6010742 5041 COSMIC
COSN6010743 5128 COSMIC
COSN21643867 5451 COSMIC
COSN6431066 6167 COSMIC
rs1043069 6167 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1203976905 3 dbSNP
rs747778450 4 dbSNP
rs550784921 8 dbSNP
rs1327264511 16 dbSNP
rs1345930345 18 dbSNP
rs929897474 18 dbSNP
rs1261356449 19 dbSNP
rs376356087 24 dbSNP
rs746984966 25 dbSNP
rs1384751771 38 dbSNP
rs770711692 44 dbSNP
rs377641262 47 dbSNP
rs1006253309 50 dbSNP
rs539578665 51 dbSNP
rs540471260 53 dbSNP
rs1398653008 55 dbSNP
rs369852240 57 dbSNP
rs1480939434 58 dbSNP
rs1377454651 60 dbSNP
rs997606184 63 dbSNP
rs1421083918 65 dbSNP
rs1251587831 68 dbSNP
rs1056792309 75 dbSNP
rs1256017066 79 dbSNP
rs12084682 82 dbSNP
rs1000209227 83 dbSNP
rs1255166908 88 dbSNP
rs1012226563 95 dbSNP
rs1023663527 101 dbSNP
rs1031994883 107 dbSNP
rs957726026 114 dbSNP
rs1307263754 120 dbSNP
rs990565863 125 dbSNP
rs898558262 130 dbSNP
rs995569117 131 dbSNP
rs1025774359 132 dbSNP
rs1282482305 133 dbSNP
rs778669251 135 dbSNP
rs749643002 136 dbSNP
rs1402178812 140 dbSNP
rs1225099429 143 dbSNP
rs1455736976 148 dbSNP
rs554539409 158 dbSNP
rs1158288774 165 dbSNP
rs1345933518 167 dbSNP
rs566774270 171 dbSNP
rs1245078231 176 dbSNP
rs1184337957 177 dbSNP
rs533902377 181 dbSNP
rs558532312 195 dbSNP
rs918436393 198 dbSNP
rs1198445056 202 dbSNP
rs1248727871 205 dbSNP
rs974432835 212 dbSNP
rs1061014 218 dbSNP
rs1183007441 219 dbSNP
rs1239013494 221 dbSNP
rs929893149 224 dbSNP
rs1316506351 232 dbSNP
rs967766267 233 dbSNP
rs979592769 237 dbSNP
rs1340392754 239 dbSNP
rs1048823475 258 dbSNP
rs1384219855 263 dbSNP
rs1386165473 272 dbSNP
rs756741656 277 dbSNP
rs1268785092 280 dbSNP
rs1418068714 286 dbSNP
rs909212297 292 dbSNP
rs1472509665 294 dbSNP
rs1039017926 299 dbSNP
rs1185355154 306 dbSNP
rs923763769 309 dbSNP
rs1263589266 315 dbSNP
rs780713565 336 dbSNP
rs1461815945 337 dbSNP
rs1051919294 349 dbSNP
rs544342146 351 dbSNP
rs999775166 352 dbSNP
rs917856897 358 dbSNP
rs75067146 367 dbSNP
rs1327574111 368 dbSNP
rs894066198 371 dbSNP
rs561546336 374 dbSNP
rs41267640 375 dbSNP
rs1343557144 377 dbSNP
rs1406735593 380 dbSNP
rs1388706011 382 dbSNP
rs16856477 383 dbSNP
rs898502767 384 dbSNP
rs1224978295 392 dbSNP
rs560580562 393 dbSNP
rs1424317796 394 dbSNP
rs995513556 404 dbSNP
rs755769306 406 dbSNP
rs574881308 409 dbSNP
rs1344656853 411 dbSNP
rs1047622382 419 dbSNP
rs1476721136 422 dbSNP
rs1205954023 424 dbSNP
rs1291183898 435 dbSNP
rs887283274 437 dbSNP
rs970443391 440 dbSNP
rs1202163302 446 dbSNP
rs982295218 453 dbSNP
rs527989480 454 dbSNP
rs746328875 456 dbSNP
rs1319199595 463 dbSNP
rs1278122222 466 dbSNP
rs1268702670 470 dbSNP
rs1008838172 484 dbSNP
rs951328325 488 dbSNP
rs1191501071 489 dbSNP
rs1435985390 492 dbSNP
rs1019854106 495 dbSNP
rs1330960940 511 dbSNP
rs1061015 518 dbSNP
rs1343824351 522 dbSNP
rs1400860767 534 dbSNP
rs1162338374 535 dbSNP
rs997120795 536 dbSNP
rs1363217934 537 dbSNP
rs368257017 541 dbSNP
rs1431206141 542 dbSNP
rs181118621 550 dbSNP
rs1477480681 554 dbSNP
rs967714171 556 dbSNP
rs1293976129 558 dbSNP
rs1244683535 563 dbSNP
rs979196552 567 dbSNP
rs909766687 572 dbSNP
rs1257919977 577 dbSNP
rs550475122 580 dbSNP
rs1326328950 590 dbSNP
rs145368930 594 dbSNP
rs923709128 595 dbSNP
rs956552970 596 dbSNP
rs147276839 611 dbSNP
rs1061016 614 dbSNP
rs1447534825 630 dbSNP
rs1229476948 641 dbSNP
rs1052316056 651 dbSNP
rs1330546991 654 dbSNP
rs947933828 654 dbSNP
rs1314660702 657 dbSNP
rs1044967272 660 dbSNP
rs1223868440 670 dbSNP
rs369503573 685 dbSNP
rs1408276939 692 dbSNP
rs1176510850 697 dbSNP
rs1413768752 699 dbSNP
rs372069220 709 dbSNP
rs902679308 710 dbSNP
rs185670268 711 dbSNP
rs1250330707 715 dbSNP
rs1463037324 719 dbSNP
rs1053966219 734 dbSNP
rs931342251 751 dbSNP
rs1209772857 758 dbSNP
rs1310823918 760 dbSNP
rs372488153 774 dbSNP
rs1241190989 778 dbSNP
rs1307152724 782 dbSNP
rs1353313740 782 dbSNP
rs1248340887 794 dbSNP
rs1381252117 815 dbSNP
rs1303366518 820 dbSNP
rs1446948828 826 dbSNP
rs1357240875 832 dbSNP
rs894035288 844 dbSNP
rs1419903489 845 dbSNP
rs1012523601 848 dbSNP
rs1047126789 853 dbSNP
rs906229492 857 dbSNP
rs1181813213 858 dbSNP
rs887222304 859 dbSNP
rs1164936814 861 dbSNP
rs1008326892 865 dbSNP
rs3856061 866 dbSNP
rs1284233931 868 dbSNP
rs566604268 871 dbSNP
rs900005370 872 dbSNP
rs1451595325 879 dbSNP
rs1025774916 883 dbSNP
rs41267642 887 dbSNP
rs1389041978 895 dbSNP
rs984331438 896 dbSNP
rs558521246 904 dbSNP
rs963911103 912 dbSNP
rs1359426390 916 dbSNP
rs1021919935 917 dbSNP
rs1380870375 923 dbSNP
rs1295978021 925 dbSNP
rs967704123 946 dbSNP
rs770942796 953 dbSNP
rs1458950840 954 dbSNP
rs1349995400 963 dbSNP
rs570547482 965 dbSNP
rs537929987 969 dbSNP
rs1422562671 978 dbSNP
rs1230086695 984 dbSNP
rs1030678779 995 dbSNP
rs1477704093 997 dbSNP
rs1261233972 998 dbSNP
rs1225040580 999 dbSNP
rs956634438 1003 dbSNP
rs975329397 1006 dbSNP
rs1264914400 1008 dbSNP
rs1219538404 1011 dbSNP
rs991924239 1013 dbSNP
rs933356177 1015 dbSNP
rs1237582044 1019 dbSNP
rs1218954264 1021 dbSNP
rs1024728521 1024 dbSNP
rs1275869726 1026 dbSNP
rs776737993 1027 dbSNP
rs1270596485 1032 dbSNP
rs556213837 1033 dbSNP
rs574883028 1035 dbSNP
rs1403007165 1038 dbSNP
rs923987641 1046 dbSNP
rs1421888922 1049 dbSNP
rs1201496850 1050 dbSNP
rs1433931364 1053 dbSNP
rs935443780 1069 dbSNP
rs1189544247 1078 dbSNP
rs879230214 1081 dbSNP
rs1203451757 1084 dbSNP
rs1240874126 1093 dbSNP
rs1053936572 1099 dbSNP
rs1317250832 1100 dbSNP
rs1484069804 1113 dbSNP
rs980650769 1114 dbSNP
rs894004233 1122 dbSNP
rs1312341719 1137 dbSNP
rs1300241746 1138 dbSNP
rs879539031 1140 dbSNP
rs919869927 1152 dbSNP
rs1378531726 1158 dbSNP
rs1331482202 1161 dbSNP
rs1181905994 1172 dbSNP
rs931319012 1174 dbSNP
rs1045379334 1180 dbSNP
rs1174612515 1183 dbSNP
rs1377272431 1186 dbSNP
rs906784958 1189 dbSNP
rs1003584406 1193 dbSNP
rs1406673239 1193 dbSNP
rs1238825930 1202 dbSNP
rs1046738182 1204 dbSNP
rs1236290547 1205 dbSNP
rs535625175 1215 dbSNP
rs1005281410 1221 dbSNP
rs1161150438 1223 dbSNP
rs908560149 1233 dbSNP
rs1255026850 1238 dbSNP
rs190745989 1244 dbSNP
rs1355441069 1251 dbSNP
rs746615174 1253 dbSNP
rs1238801058 1255 dbSNP
rs1174067628 1258 dbSNP
rs899994060 1270 dbSNP
rs775626763 1271 dbSNP
rs1396952287 1277 dbSNP
rs1401992633 1280 dbSNP
rs1043316827 1285 dbSNP
rs1450508240 1290 dbSNP
rs1421699987 1299 dbSNP
rs904747168 1304 dbSNP
rs572639140 1317 dbSNP
rs955326482 1326 dbSNP
rs999134967 1328 dbSNP
rs1389752943 1334 dbSNP
rs35596452 1338 dbSNP
rs1361979687 1350 dbSNP
rs987850233 1354 dbSNP
rs763322203 1360 dbSNP
rs1290696824 1372 dbSNP
rs1208488159 1373 dbSNP
rs892137748 1382 dbSNP
rs1223280939 1386 dbSNP
rs768275552 1398 dbSNP
rs923985414 1407 dbSNP
rs1013743450 1410 dbSNP
rs1261706594 1431 dbSNP
rs1024717199 1439 dbSNP
rs1246116797 1440 dbSNP
rs566994836 1445 dbSNP
rs564851369 1453 dbSNP
rs1310953796 1455 dbSNP
rs576879124 1458 dbSNP
rs1231986292 1459 dbSNP
rs74133646 1462 dbSNP
rs369130608 1463 dbSNP
rs982723895 1465 dbSNP
rs1163934352 1479 dbSNP
rs545962567 1493 dbSNP
rs908506346 1494 dbSNP
rs1367826506 1495 dbSNP
rs1185529074 1522 dbSNP
rs944088091 1532 dbSNP
rs976831365 1533 dbSNP
rs1478714832 1537 dbSNP
rs1263429720 1540 dbSNP
rs1192537540 1541 dbSNP
rs921373131 1543 dbSNP
rs373417881 1545 dbSNP
rs1043222598 1553 dbSNP
rs939637033 1560 dbSNP
rs1047151315 1564 dbSNP
rs73047730 1572 dbSNP
rs1220834430 1574 dbSNP
rs73047732 1582 dbSNP
rs1398335799 1585 dbSNP
rs1038124517 1591 dbSNP
rs368696263 1615 dbSNP
rs183598951 1617 dbSNP
rs1324215752 1622 dbSNP
rs142270966 1623 dbSNP
rs376521406 1625 dbSNP
rs766984812 1627 dbSNP
rs1466964164 1634 dbSNP
rs570439230 1635 dbSNP
rs1192695692 1665 dbSNP
rs1404933049 1682 dbSNP
rs187237013 1686 dbSNP
rs1281956408 1691 dbSNP
rs1450595356 1694 dbSNP
rs1251652836 1696 dbSNP
rs1024670067 1698 dbSNP
rs1319248760 1703 dbSNP
rs80034284 1704 dbSNP
rs1213189496 1714 dbSNP
rs1001929112 1720 dbSNP
rs1031409020 1728 dbSNP
rs1026737274 1738 dbSNP
rs1435821630 1743 dbSNP
rs1329461010 1747 dbSNP
rs1333482166 1758 dbSNP
rs568457222 1777 dbSNP
rs1305464221 1780 dbSNP
rs1400957519 1780 dbSNP
rs192169032 1784 dbSNP
rs1491516112 1795 dbSNP
rs1491436463 1796 dbSNP
rs1172847884 1800 dbSNP
rs989482171 1802 dbSNP
rs150835242 1811 dbSNP
rs965741278 1813 dbSNP
rs1458555066 1818 dbSNP
rs1202853317 1828 dbSNP
rs79276843 1828 dbSNP
rs921283655 1830 dbSNP
rs1478202297 1831 dbSNP
rs1218828479 1832 dbSNP
rs542018082 1838 dbSNP
rs1204799800 1842 dbSNP
rs1185779195 1844 dbSNP
rs1311479401 1847 dbSNP
rs1419070967 1858 dbSNP
rs954070975 1859 dbSNP
rs1297597376 1860 dbSNP
rs762980152 1861 dbSNP
rs1802468 1862 dbSNP
rs568754668 1863 dbSNP
rs939585319 1879 dbSNP
rs1413501581 1901 dbSNP
rs779855569 1903 dbSNP
rs1439837732 1904 dbSNP
rs1380207450 1907 dbSNP
rs1176027883 1910 dbSNP
rs1371191573 1910 dbSNP
rs1238363484 1932 dbSNP
rs576818238 1944 dbSNP
rs1484774807 1945 dbSNP
rs182577985 1946 dbSNP
rs1217414813 1954 dbSNP
rs562551616 1959 dbSNP
rs574440965 1964 dbSNP
rs950318550 1976 dbSNP
rs1221961448 1977 dbSNP
rs1046026363 1989 dbSNP
rs139388745 1997 dbSNP
rs144509229 2000 dbSNP
rs999173425 2003 dbSNP
rs1031629100 2006 dbSNP
rs868622422 2018 dbSNP
rs1359306998 2026 dbSNP
rs1156347096 2033 dbSNP
rs778809299 2034 dbSNP
rs1048178173 2043 dbSNP
rs1010880149 2051 dbSNP
rs1181635748 2053 dbSNP
rs1474463266 2056 dbSNP
rs888275970 2068 dbSNP
rs373949753 2071 dbSNP
rs1194701785 2072 dbSNP
rs1004074053 2082 dbSNP
rs1297905529 2087 dbSNP
rs1022322063 2091 dbSNP
rs1015913889 2119 dbSNP
rs1358051985 2121 dbSNP
rs980906512 2122 dbSNP
rs1291926102 2128 dbSNP
rs775522115 2128 dbSNP
rs1035590118 2132 dbSNP
rs965265770 2133 dbSNP
rs998105454 2135 dbSNP
rs1214772497 2136 dbSNP
rs527457784 2138 dbSNP
rs1400180602 2141 dbSNP
rs954059537 2142 dbSNP
rs1466105728 2155 dbSNP
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rs1259916327 2213 dbSNP
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rs1323147795 5272 dbSNP
rs898996147 5274 dbSNP
rs929151897 5292 dbSNP
rs1047607488 5296 dbSNP
rs1194779353 5301 dbSNP
rs890353769 5304 dbSNP
rs143023378 5307 dbSNP
rs1249119157 5310 dbSNP
rs1273104923 5314 dbSNP
rs552933934 5318 dbSNP
rs1196724051 5322 dbSNP
rs183683270 5339 dbSNP
rs1364851609 5342 dbSNP
rs1318970210 5346 dbSNP
rs1017568329 5350 dbSNP
rs900533418 5364 dbSNP
rs1350748328 5379 dbSNP
rs1200470471 5385 dbSNP
rs1253257956 5386 dbSNP
rs1042369269 5387 dbSNP
rs1010987397 5390 dbSNP
rs868623010 5398 dbSNP
rs1450018396 5404 dbSNP
rs903766757 5413 dbSNP
rs1186513278 5419 dbSNP
rs1022824596 5423 dbSNP
rs1220413447 5426 dbSNP
rs534761294 5437 dbSNP
rs966839072 5439 dbSNP
rs999621495 5442 dbSNP
rs1391911691 5444 dbSNP
rs10158909 5446 dbSNP
rs1054846638 5449 dbSNP
rs879411307 5454 dbSNP
rs1368530137 5456 dbSNP
rs894579031 5458 dbSNP
rs960907696 5466 dbSNP
rs1434606670 5470 dbSNP
rs1372419845 5475 dbSNP
rs991039552 5481 dbSNP
rs1430325593 5483 dbSNP
rs1389541618 5484 dbSNP
rs1168021932 5486 dbSNP
rs1024484660 5495 dbSNP
rs915572556 5496 dbSNP
rs1388299422 5500 dbSNP
rs1425637652 5509 dbSNP
rs1190212462 5515 dbSNP
rs970168735 5520 dbSNP
rs973159886 5523 dbSNP
rs973802333 5524 dbSNP
rs1253333715 5526 dbSNP
rs759548400 5531 dbSNP
rs1047556178 5532 dbSNP
rs373643844 5547 dbSNP
rs571553088 5553 dbSNP
rs1236114923 5564 dbSNP
rs944595711 5572 dbSNP
rs1309362279 5578 dbSNP
rs1313102030 5578 dbSNP
rs1228747711 5580 dbSNP
rs188688692 5584 dbSNP
rs564752914 5585 dbSNP
rs1026557313 5590 dbSNP
rs1265377920 5591 dbSNP
rs952284510 5592 dbSNP
rs557310834 5600 dbSNP
rs1216002379 5601 dbSNP
rs1296329520 5604 dbSNP
rs1273416496 5609 dbSNP
rs575517359 5610 dbSNP
rs1175175857 5617 dbSNP
rs1479242906 5621 dbSNP
rs964503574 5622 dbSNP
rs900480321 5623 dbSNP
rs1182226179 5629 dbSNP
rs1471957799 5645 dbSNP
rs976201525 5647 dbSNP
rs1483868595 5649 dbSNP
rs1255767348 5655 dbSNP
rs1011352286 5662 dbSNP
rs923014992 5667 dbSNP
rs1043746970 5673 dbSNP
rs902584641 5674 dbSNP
rs1042233076 5678 dbSNP
rs945228205 5678 dbSNP
rs1348648201 5680 dbSNP
rs1249292264 5681 dbSNP
rs79439237 5683 dbSNP
rs554720500 5684 dbSNP
rs573011362 5685 dbSNP
rs1035116954 5691 dbSNP
rs960895611 5693 dbSNP
rs1379876047 5699 dbSNP
rs1302018374 5707 dbSNP
rs936549601 5710 dbSNP
rs181113966 5711 dbSNP
rs894433777 5712 dbSNP
rs1395466763 5714 dbSNP
rs1456867393 5715 dbSNP
rs1024332706 5717 dbSNP
rs565185077 5718 dbSNP
rs963005520 5738 dbSNP
rs1318825487 5739 dbSNP
rs1199717212 5740 dbSNP
rs184698517 5744 dbSNP
rs1364092120 5745 dbSNP
rs1182099784 5750 dbSNP
rs532645711 5755 dbSNP
rs973453771 5759 dbSNP
rs1466490609 5765 dbSNP
rs1269175934 5766 dbSNP
rs1046273185 5767 dbSNP
rs920260597 5776 dbSNP
rs748437836 5778 dbSNP
rs950413102 5779 dbSNP
rs983231157 5782 dbSNP
rs911722845 5787 dbSNP
rs1267286543 5796 dbSNP
rs944544949 5800 dbSNP
rs1322217308 5806 dbSNP
rs1311864542 5812 dbSNP
rs1339293521 5813 dbSNP
rs544612911 5815 dbSNP
rs993655213 5825 dbSNP
rs190416710 5830 dbSNP
rs921817547 5834 dbSNP
rs1433902032 5845 dbSNP
rs946675549 5850 dbSNP
rs1164472821 5852 dbSNP
rs1458005779 5854 dbSNP
rs1367406191 5860 dbSNP
rs1162160568 5864 dbSNP
rs1044080964 5868 dbSNP
rs1206393885 5869 dbSNP
rs1445469814 5870 dbSNP
rs1006852669 5871 dbSNP
rs902532346 5871 dbSNP
rs758523912 5872 dbSNP
rs1488172387 5873 dbSNP
rs1199442823 5875 dbSNP
rs1289704845 5898 dbSNP
rs1243597634 5905 dbSNP
rs778255128 5913 dbSNP
rs530395140 5914 dbSNP
rs548965063 5920 dbSNP
rs1324290028 5923 dbSNP
rs1012859568 5926 dbSNP
rs1023823012 5930 dbSNP
rs975767902 5936 dbSNP
rs1389303331 5938 dbSNP
rs1300816974 5944 dbSNP
rs1432152407 5957 dbSNP
rs898702865 5970 dbSNP
rs747384742 5973 dbSNP
rs7355147 5976 dbSNP
rs977938775 5977 dbSNP
rs1379751576 5979 dbSNP
rs950400030 5980 dbSNP
rs528233049 5982 dbSNP
rs546798857 5983 dbSNP
rs777304076 5986 dbSNP
rs1451260992 5991 dbSNP
rs576076464 5999 dbSNP
rs571504345 6004 dbSNP
rs965834962 6011 dbSNP
rs948764661 6016 dbSNP
rs1045718182 6018 dbSNP
rs1276402410 6020 dbSNP
rs1302372566 6037 dbSNP
rs937348021 6043 dbSNP
rs1330209561 6048 dbSNP
rs146147694 6048 dbSNP
rs145821136 6055 dbSNP
rs1280778920 6057 dbSNP
rs921793422 6061 dbSNP
rs1411165177 6069 dbSNP
rs946594116 6075 dbSNP
rs907320537 6076 dbSNP
rs115416654 6101 dbSNP
rs1294475734 6102 dbSNP
rs923941926 6106 dbSNP
rs1477816596 6122 dbSNP
rs1226956542 6126 dbSNP
rs1047895853 6131 dbSNP
rs746340251 6133 dbSNP
rs769386776 6136 dbSNP
rs1180913520 6139 dbSNP
rs1436075896 6142 dbSNP
rs1317187382 6143 dbSNP
rs1200872860 6148 dbSNP
rs1431872486 6151 dbSNP
rs1322359088 6153 dbSNP
rs1231863262 6156 dbSNP
rs1253694997 6157 dbSNP
rs1486384681 6160 dbSNP
rs896549778 6164 dbSNP
rs1229872995 6166 dbSNP
rs1350504182 6166 dbSNP
rs879523838 6166 dbSNP
rs1043069 6167 dbSNP
rs1440648657 6172 dbSNP
rs140194548 6176 dbSNP
rs1045606181 6184 dbSNP
rs1335253302 6187 dbSNP
rs1481944862 6198 dbSNP
rs898698029 6199 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL35
Disease MIMAT0011161
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020022. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cccucaagaaccguACCCUCc 5'
                        |||||| 
Target 5' ---ucaagagagcuUGGGAGa 3'
 		1 - 18
Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020022
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL35 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000367590.4 | 3UTR | UCAAGAGAGCUUGGGAGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PRAD 0.465 0.03 0.542 0.01 17 Click to see details
CHOL 0.547 0.08 0.619 0.05 8 Click to see details
BRCA 0.201 0.1 0.158 0.15 44 Click to see details
KIRP -0.233 0.13 -0.251 0.11 26 Click to see details
BLCA -0.462 0.15 -0.464 0.15 7 Click to see details
LUAD 0.424 0.17 0.321 0.24 7 Click to see details
UCEC -0.233 0.22 -0.132 0.33 13 Click to see details
STAD 0.209 0.23 0.150 0.3 15 Click to see details
KIRC 0.072 0.36 0.076 0.35 28 Click to see details
LIHC 0.056 0.37 0.057 0.37 38 Click to see details
HNSC -0.04 0.43 -0.049 0.42 21 Click to see details
THCA -0.021 0.45 0.040 0.41 37 Click to see details
KICH -0.023 0.47 -0.088 0.37 17 Click to see details
LUSC 0.016 0.47 0.029 0.44 29 Click to see details
PAAD -0.034 0.49 -0.500 0.33 3 Click to see details
PAAD -0.034 0.49 -0.500 0.33 3 Click to see details
PAAD -0.034 0.49 -0.500 0.33 3 Click to see details
PAAD -0.034 0.49 -0.500 0.33 3 Click to see details
152 hsa-miR-2116-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT052654 PLA2G4F phospholipase A2 group IVF 1 1
MIRT064886 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT130162 TXNIP thioredoxin interacting protein 2 6
MIRT222068 PURB purine rich element binding protein B 2 4
MIRT232512 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT243458 LMLN leishmanolysin like peptidase 2 2
MIRT461322 MRPS27 mitochondrial ribosomal protein S27 2 2
MIRT493800 GAN gigaxonin 2 6
MIRT495019 C2CD4B C2 calcium dependent domain containing 4B 2 2
MIRT497481 XPR1 xenotropic and polytropic retrovirus receptor 1 2 2
MIRT497542 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT504017 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT504762 TEP1 telomerase associated protein 1 2 4
MIRT504833 EREG epiregulin 2 2
MIRT505554 SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 2 2
MIRT506088 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT513389 TUBB4A tubulin beta 4A class IVa 2 2
MIRT521643 PROSC pyridoxal phosphate binding protein 2 2
MIRT525286 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT525334 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT525789 SOD2 superoxide dismutase 2 2 2
MIRT526169 ANKRD65 ankyrin repeat domain 65 2 2
MIRT526759 GATS GATS, stromal antigen 3 opposite strand 2 2
MIRT527223 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT527423 NRL neural retina leucine zipper 2 2
MIRT528795 RAB32 RAB32, member RAS oncogene family 2 2
MIRT529002 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT529792 AP4S1 adaptor related protein complex 4 sigma 1 subunit 2 2
MIRT530236 PLXDC1 plexin domain containing 1 2 2
MIRT530511 C4orf32 family with sequence similarity 241 member A 2 2
MIRT530805 GPR182 G protein-coupled receptor 182 2 2
MIRT531301 GPR26 G protein-coupled receptor 26 2 2
MIRT534309 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT535303 PHF12 PHD finger protein 12 2 2
MIRT544454 KRBOX4 KRAB box domain containing 4 2 2
MIRT547160 PDZD8 PDZ domain containing 8 2 2
MIRT548160 FRAT2 FRAT2, WNT signaling pathway regulator 2 2
MIRT551675 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT551692 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT555855 PAPD4 poly(A) RNA polymerase D4, non-canonical 2 2
MIRT566196 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT569417 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT570779 ZNF468 zinc finger protein 468 2 2
MIRT572902 RUNDC3B RUN domain containing 3B 2 2
MIRT607664 BTN3A2 butyrophilin subfamily 3 member A2 2 2
MIRT608835 PTCHD1 patched domain containing 1 2 2
MIRT610299 KLHL21 kelch like family member 21 2 2
MIRT610318 CBY3 chibby family member 3 2 2
MIRT615460 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT618287 ZNF682 zinc finger protein 682 2 2
MIRT619077 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT620181 TRIM72 tripartite motif containing 72 2 2
MIRT621543 ZNF500 zinc finger protein 500 2 2
MIRT621619 UHRF1BP1L UHRF1 binding protein 1 like 2 2
MIRT621719 TRAPPC10 trafficking protein particle complex 10 2 2
MIRT622715 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT625679 SYAP1 synapse associated protein 1 2 2
MIRT626059 AP3M1 adaptor related protein complex 3 mu 1 subunit 2 2
MIRT626152 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626172 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT629678 MYO1F myosin IF 2 2
MIRT629821 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT630641 ELK1 ELK1, ETS transcription factor 2 2
MIRT631231 C7orf65 chromosome 7 open reading frame 65 2 2
MIRT633344 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT633552 ATAD3C ATPase family, AAA domain containing 3C 2 2
MIRT633595 CFHR5 complement factor H related 5 2 2
MIRT635442 SLC25A44 solute carrier family 25 member 44 2 2
MIRT636490 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT636867 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637180 TMEM50A transmembrane protein 50A 2 2
MIRT638726 FOXK1 forkhead box K1 2 2
MIRT638921 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT639830 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT641013 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT641817 ULK2 unc-51 like autophagy activating kinase 2 2 2
MIRT641966 PWWP2A PWWP domain containing 2A 2 2
MIRT643596 SPAG16 sperm associated antigen 16 2 2
MIRT643684 AMER3 APC membrane recruitment protein 3 2 2
MIRT644453 ALDOC aldolase, fructose-bisphosphate C 2 2
MIRT645278 SLC38A5 solute carrier family 38 member 5 2 2
MIRT646676 CCDC69 coiled-coil domain containing 69 2 2
MIRT646833 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT648206 TRIM35 tripartite motif containing 35 2 2
MIRT648265 ZNF582 zinc finger protein 582 2 2
MIRT648858 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648891 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT649726 LTBP2 latent transforming growth factor beta binding protein 2 2 2
MIRT649819 PSMC1 proteasome 26S subunit, ATPase 1 2 2
MIRT652357 TMEM92 transmembrane protein 92 2 2
MIRT652915 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT654054 S1PR1 sphingosine-1-phosphate receptor 1 2 2
MIRT654130 RPL14 ribosomal protein L14 2 2
MIRT654374 RBM23 RNA binding motif protein 23 2 2
MIRT654503 RABIF RAB interacting factor 2 2
MIRT655743 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT656543 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT656863 KIN Kin17 DNA and RNA binding protein 2 2
MIRT657233 IER5 immediate early response 5 2 2
MIRT657464 C21orf33 chromosome 21 open reading frame 33 2 2
MIRT658243 FAXC failed axon connections homolog 2 2
MIRT658456 FAM13B family with sequence similarity 13 member B 2 2
MIRT658510 ETV3 ETS variant 3 2 2
MIRT658574 EPHB2 EPH receptor B2 2 2
MIRT659000 DIAPH1 diaphanous related formin 1 2 2
MIRT659642 CDK2 cyclin dependent kinase 2 2 2
MIRT660330 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT660803 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT660990 ABHD2 abhydrolase domain containing 2 2 2
MIRT662980 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663208 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT664535 EXOG exo/endonuclease G 2 2
MIRT666119 SRRM4 serine/arginine repetitive matrix 4 2 2
MIRT668146 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668831 CYCS cytochrome c, somatic 2 2
MIRT673401 WNT7B Wnt family member 7B 2 2
MIRT676356 ZNF844 zinc finger protein 844 2 2
MIRT676442 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT683417 ZNF878 zinc finger protein 878 2 2
MIRT686353 USP15 ubiquitin specific peptidase 15 2 2
MIRT690686 PTCHD3 patched domain containing 3 2 2
MIRT696043 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT700854 PERP PERP, TP53 apoptosis effector 2 2
MIRT709639 C2orf91 chromosome 2 open reading frame 91 2 2
MIRT709956 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711652 RAB21 RAB21, member RAS oncogene family 2 2
MIRT711847 AMOTL2 angiomotin like 2 2 2
MIRT713388 NLN neurolysin 2 2
MIRT713933 PIGR polymeric immunoglobulin receptor 2 2
MIRT714991 TSPAN11 tetraspanin 11 2 2
MIRT715728 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT716050 GRAMD1B GRAM domain containing 1B 2 2
MIRT717141 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT717412 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT717525 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT717914 LRRC15 leucine rich repeat containing 15 2 2
MIRT717969 PXMP4 peroxisomal membrane protein 4 2 2
MIRT718742 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT719096 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT719142 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719221 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719524 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT719921 PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 2 2
MIRT720324 CAMK2G calcium/calmodulin dependent protein kinase II gamma 2 2
MIRT720719 RAPGEF6 Rap guanine nucleotide exchange factor 6 2 2
MIRT721636 MYLK3 myosin light chain kinase 3 2 2
MIRT722611 TEAD1 TEA domain transcription factor 1 2 2
MIRT724381 NEK8 NIMA related kinase 8 2 2
MIRT724526 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT725454 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT725549 DNMT3A DNA methyltransferase 3 alpha 2 2
MIRT725637 BTBD9 BTB domain containing 9 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-2116 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2116 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-2116 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2116-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-2116-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-2116-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-2116-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2116-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-2116-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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