miRTarBase - #MIRT498309


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pre-miRNA Information
pre-miRNA hsa-mir-378g   
Genomic Coordinates chr1: 94745860 - 94745900
Description Homo sapiens miR-378g stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-378g
Sequence 2| ACUGGGCUUGGAGUCAGAAG |21
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BCL11B   
Synonyms ATL1, ATL1-alpha, ATL1-beta, ATL1-delta, ATL1-gamma, CTIP-2, CTIP2, IMD49, RIT1, ZNF856B, hRIT1-alpha
Description B-cell CLL/lymphoma 11B
Transcript NM_022898   
Other Transcripts NM_138576   
Expression
Putative miRNA Targets on BCL11B
3'UTR of BCL11B
(miRNA target sites are highlighted)		 
>BCL11B|NM_022898|3'UTR
   1 GCGCGCGGGCCCCGGCGCCCCGCACCTGTACAGTGGAACCGTTGCCAACCGAGAGAATGCTGACCTGACTTGCCTCCGTG
  81 TCACCGCCACCCCGCACCCCGCGTGTCCCCGGGGCCCAGGGGAGGCGGCACTCCAACCTAACCTGTGTCTGCGAAGTCCT
 161 ATGGAAACCCGAGGGTTGATTAAGGCAGTACAAATTGTGGAGCCTTTTAACTGTGCAATAATTTCTGTATTTATTGGGTT
 241 TTGTAATTTTTTTGGCATGTGCAGGTACTTTTTATTATTATTTTTTCTGTTTGAATTCCTTTAAGAGATTTTGTTGGGTA
 321 TCCATCCCTTCTTTGTTTTTTTTTTAACCCGGTAGTAGCCTGAGCAATGACTCGCAAGCAATGTTAGAGGGGAAGCATAT
 401 CTTTTAAATTATAATTTGGGGGGAGGGGTGGTGCTGCTTTTTTGAAATTTAAGCTAAGCATGTGTAATTTCTTGTGAAGA
 481 AGCCAACACTCAAATGACTTTTAAAGTTGTTTACTTTTTCATTCCTTCCTTTTTTTTGTCCTGAAATAAAAAGTGGCATG
 561 CAGTTTTTTTTTTAATTATTTTTTAATTTTTTTTTTGGTTTTTGTTTTTGGGGTGGGGGGTGTGGATGTACAGCGGATAA
 641 CAATCTTTCAAGTCGTAGCACTTTGTTTCAGAACTGGAATGGAGATGTAGCACTCATGTCGTCCCGAGTCAAGCGGCCTT
 721 TTCTGTGTTGATTTCGGCTTTCATATTACATAAGGGAAACCTTGAGTGGTGGTGCTGGGGGAGGCACCCCACAGACTCAG
 801 CGCCGCCAGAGATAGGGTTTTTGGAGGGCTCCTCTGGGAAATGGCCCGACAGCATTCTGAGGTTGTGCATGACCAGCAGA
 881 TACTATCCTGTTGGTGTGCCCTGGGGTGCCATGGCTGCTATTCGCTGTAGATTAGGCTACATAAAATGGGCTGAGGGTAC
 961 CTTTTTGGGGAGATGGGGTGGCCTGCAGTGACACAGAAAGGAAGAAACTAGCGGTGTTCTTTTAGGCGTTTTCTGGCTTG
1041 ACGGCTTCTCTCTTTTTTTAAATCACCCCCACCACATAAATCTCAAATCCTATGTTGCTACAAGGGGTCATCCATCATTT
1121 CCCAAGCAGACGAATGCCCTAATTAATTGAAGTTAGTGTTCTCTCATTTAATGCACACTGATGATATTGTAGGGATGGGT
1201 GGGGTGGGGATCTTGCAAATTTCTATTCTCTTTTACTGAAAAAGCAGGGGATGAGTTCCATCAGAAGGTGCCCAGCGCTA
1281 CTTCCCAGGTTTTTATTTTTTTTTTCCTATCTCATTAGGTTGGAAGGTACTAAATATTGAACTGTTAAGATTAGACATTT
1361 GAATTCTGTTGACCCGCACTTTAAAGCTTTTGTTTGCATTTAAATTAAATGGCTTCTAAACAAGAAATTGCAGCATATTC
1441 TTCTCTTTGGCCCAGAGGTGGGTTAAACTGTAAGGGACAGCTGAGATTGAGTGTCAGTATTGCTAAGCGTGGCATTCACA
1521 ATACTGGCACTATAAAGAACAAAATAAAATAATAATTTATAGGACAGTTTTTCTACTGCCATTCAATTTGATGTGAGTGC
1601 CTTGAAAACTGATCTTCCTATTTGAGTCTCTTGAGACAAATGCAAAACTTTTTTTTTGAAATGAAAAGACTTTTTAAAAA
1681 AGTAAAACAAGAAAAGTACATTCTTTAGAAACTAACAAAGCCACATTTACTTTAAGTAAAAAAAAAAAAAATTCTGGTTG
1761 AAGATAGAGGATATGAAATGCCATAAGACCCAATCAAATGAAGAAATAAACCCAGCACAACCTTGGACATCCATTAGCTG
1841 AATTATCCTCAGCCCCTTTTGTTTTTGGGACAACGCTGCTTAGATATGGAGTGGAGGTGATTTACTGCTGAATTAAAACT
1921 CAAGTGACACAAGTTACAAGTTGATATCGTTGAATGAAAAGCAAAACAAAAACAATTCAGGAACAACGGCTAATTTTTTC
2001 TAAAGTTAAATTTAGTGCACTCTGTCTTAAAAATACGTTTACAGTATTGGGTACATACAAGGGTAAAAAAAAAATTGTGT
2081 GTATGTGTGTTGGAGCGATCTTTTTTTTTCAAAGTTTGCTTAATAGGTTATACAAAAATGCCACAGTGGCCGCGTGTATA
2161 TTGTTTTCTTTTGGTGACGGGGTTTTAGTATATATTATATATATTAAAATTTCTTGATTACTGTAAAAGTGGACCAGTAT
2241 TTGTAATAATCGAGAATGCCTGGGCATTTTACAAAACAAGAAAAAAAATACCCTTTTCTTTTCCTTGAAAATGTTGCAGT
2321 AAAATTTAAATGGTGGGTCTATAAATTTGTTCTTGTTACAGTAACTGTAAAGTCGGAGTTTTAGTAAATTTTTTTCTGCC
2401 TTGGGTGTTGAATTTTTATTTCAAAAAAAATGTATAGAAACTTGTATTTGGGGATTCAAAGGGGATTGCTACACCATGTA
2481 GAAAAAGTATGTAGAAAAAAAGTGCTTAATATTGTTATTGCTTTGCAGAAAAAAAAAAAATCACATTTCTGACCTGTACT
2561 TATTTTTCTCTTCCCGCCTCCCTCTGGAATGGATATATTGGTTGGTTCATATGATGTAGGCACTTGCTGTATTTTTACTG
2641 GAGCTCGTAATTTTTTAACTGTAAGCTTGTCCTTTTAAAGGGATTTAATGTACCTTTTTGTTAGTGAATTTGGAAATAAA
2721 AAGAAAAAAAAAACAAAAACAAACAGGCTGCCATAATATATTTTTTTAATTTGGCAGGATAAAATATTGCAAAAAAAACA
2801 CATTTGTATGTTAAGTCCTATTGTACAGGAGAAAAAGGGTTGTTTGACAACCTTTGAGAAAAAGAAACAAAAGGAAGTAG
2881 TTAAATGCTTTGGTTCACAAATCATTTAGTTGTATATATTTTTTGTCGGAATTGGCCTACACAGAGAACCGTTCGTGTTG
2961 GGCTTCTCTCTGAACGCCCCGAACCTTGCATCAAGGCTCCTTGGTGTGGCCACAGCAGACCAGATGGGAAATTATTTGTG
3041 TTGAGTGGAAAAAAATCAGTTTTTGTAAAGATGTCAGTAACATTCCACATCGTCCTCCCTTTCTCTAAGAGGCCATCTCT
3121 AAGATGTCAGATGTAGAGGAGAGAGAGCGAGAGAACATCTTCCTTCTCTACCATCACTCCTGTGGCGGTCACCACCACCA
3201 CCTCTCCCGCCCTTACCAGCAGAAAGCAATGCAAACTGAGCTGCTTTAGTCCTTGAGAAATTGTGAAACAAACACAAATA
3281 TCATAAAAGGAGCTGGTGATTCAGCTGGGTCCAGGTGAAGTGACCTGCTGTTGAGACCGGTACAAATTGGATTTCAGGAA
3361 GGAGACTCCATCACAGCCAGGACCTTTCGTGCCATGGAGAGTGTTGGCCTCTTGTCTTTCTTCCCTGCTTTGCTGCTTTG
3441 CTCTCTGAAACCTACATTCCGTCAGTTTCCGAATGCGAGGGCCTGGGATGAATTTGGTGCCTTTCCATATCTCGTTCTCT
3521 CTCCTTCCCCTGCGTTTCCTCTCCATCCTTCATCCTCCATTGGTCCTTTTTTTTTCTTTCATTTTTTATTTAATTTCTTT
3601 TCTTCCTGTCTGTTCCTCCCCTAATCCTCTATTTTATTTTTATTTTTTGTAAAGCCAAGTAGCTTTAAGATAAAGTGGTG
3681 GTCTTTTGGATGAGGGAATAATGCATTTTTAAATAAAATACCAATATCAGGAAGCCATTTTTTATTTCAGGAAATGTAAG
3761 AAACCATTATTTCAGGTTATGAAAGTATAACCAAGCATCCTTTTGGGCAATTCCTTACCAAATGCAGAAGCTTTTCTGTT
3841 CGATGCACTCTTTCCTCCTTGCCACTTACCTTTGCAAAGTTAAAAAAAAGGGGGGAGGGAATGGGAGAGAAAGCTGAGAT
3921 TTCAGTTTCCTACTGCAGTTTCCTACCTGCAGATCCAGGGGCTGCTGTTGCCTTTGGATGCCCCACTGAGGTCCTAGAGT
4001 GCCTCCAGGGTGGTCTTCCTGTAGTCATAACAGCTAGCCAGTGCTCACCAGCTTACCAGATTGCCAGGACTAAGCCATCC
4081 CAAAGCACAAGCATTGTGTGTCTCTGTGACTGCAGAGAAGAGAGAATTTTGCTTCTGTTTTGTGTTTAAAAAACCAACAC
4161 GGAAGCAGATGATCCCGAGAGAGAGGCCTCTAGCATGGGTGACCCAGCCGACCTCAGGCCGGTTTCCGCACTGCCACAAC
4241 TTTGTTCAAAGTTGCCCCCAATTGGAACCTGCCACTTGGCATTAGAGGGTCTTTCATGGGGAGAGAAGGAGACTGAATTA
4321 CTCTAAGCAAAATGTGAAAAGTAAGGAAATCAGCCTTTCATCCCGGTCCTAAGTAACCGTCAGCCGAAGGTCTCGTGGAA
4401 CACAGGCAAACCCGTGATTTTGGTGCTCCTTGTAACTCAGCCCTGCAAAGCAAAGTCCCATTGATTTAAGTTGTTTGCAT
4481 TTGTACTGGCAAGGCAAAATATTTTTATTACCTTTTCTATTACTTATTGTATGAGCTTTTGTTGTTTACTTGGAGGTTTT
4561 GTCTTTTACTACAAGTTTGGAACTATTTATTATTGCTTGGTATTTGTGCTCTGTTTAAGAAACAGGCACTTTTTTTTATT
4641 ATGGATAAAATGTTGAGATGACAGGAGGTCATTTCAATATGGCTTAGTAAAATATTTATTGTTCCTTTATTCTCTGTACA
4721 AGATTTTGGGCCTCTTTTTTTCCTTAATGTCACAATGTTGAGTTCAGCATGTGTCTGCCATTTCATTTGTACGCTTGTTC
4801 AAAACCAAGTTTGTTCTGGTTTCAAGTTATAAAAATAAATTGGACATTTAACTTGATCTCCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaagACUGAGG-UUCGGGUCa 5'
              || | || ::|||||| 
Target 5' cgcgTGTCCCCGGGGCCCAGg 3'
 100 - 120 136.00 -14.70
2 
miRNA  3' gaAGACUGAG-GUUCGGGUCa 5'
            |||  ||| : :|||||| 
Target 5' atTCT-TCTCTTTGGCCCAGa 3'
 1437 - 1456 133.00 -17.40
3 
miRNA  3' gaagACUGA---GGUUCGGGUCa 5'
              |||:|   |:::|:|||| 
Target 5' ctggTGATTCAGCTGGGTCCAGg 3'
 3293 - 3315 124.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26439537 4 COSMIC
COSN31513067 13 COSMIC
COSN30190843 14 COSMIC
COSN30160439 16 COSMIC
COSN13603992 22 COSMIC
COSN20051757 63 COSMIC
COSN28201804 86 COSMIC
COSN30125750 93 COSMIC
COSN30110543 94 COSMIC
COSN28250136 119 COSMIC
COSN7036113 333 COSMIC
COSN31546318 335 COSMIC
COSN31538905 350 COSMIC
COSN19663694 373 COSMIC
COSN31541541 383 COSMIC
COSN31533670 417 COSMIC
COSN31547690 493 COSMIC
COSN20111678 563 COSMIC
COSN31608465 569 COSMIC
COSN20111675 586 COSMIC
COSN28725953 613 COSMIC
COSN31484114 649 COSMIC
COSN31522864 688 COSMIC
COSN31514111 714 COSMIC
COSN26581259 715 COSMIC
COSN6266554 729 COSMIC
COSN30073418 802 COSMIC
COSN9621645 882 COSMIC
COSN32064505 1064 COSMIC
COSN4760767 1093 COSMIC
COSN1173877 1121 COSMIC
COSN31549771 1278 COSMIC
COSN17182007 1374 COSMIC
COSN31545606 1376 COSMIC
COSN31551659 1525 COSMIC
COSN31547706 1537 COSMIC
COSN31484098 1617 COSMIC
COSN5752651 1621 COSMIC
COSN8589170 1633 COSMIC
COSN22821606 1649 COSMIC
COSN31585142 1693 COSMIC
COSN20111672 1738 COSMIC
COSN31484095 1850 COSMIC
COSN31565702 1850 COSMIC
COSN8589169 1987 COSMIC
COSN31484041 2022 COSMIC
COSN31520026 2095 COSMIC
COSN31556580 2100 COSMIC
COSN32064188 2176 COSMIC
COSN26671209 2191 COSMIC
COSN20945376 2229 COSMIC
COSN31548890 2239 COSMIC
COSN25428714 2288 COSMIC
COSN8589168 2391 COSMIC
COSN31569252 2400 COSMIC
COSN31575950 2422 COSMIC
COSN1668675 2450 COSMIC
COSN20092890 2458 COSMIC
COSN27313982 2529 COSMIC
COSN31562016 2630 COSMIC
COSN31565968 2641 COSMIC
COSN31570007 2647 COSMIC
COSN31566436 2713 COSMIC
COSN27387331 2723 COSMIC
COSN30161615 2782 COSMIC
COSN26892170 2783 COSMIC
COSN26643779 2789 COSMIC
COSN31597015 2790 COSMIC
COSN26641660 2806 COSMIC
COSN31485880 2873 COSMIC
COSN16344463 2876 COSMIC
COSN31578698 2880 COSMIC
COSN26551201 2970 COSMIC
COSN30538904 3028 COSMIC
COSN31579337 3100 COSMIC
COSN29483234 3136 COSMIC
COSN28780461 3145 COSMIC
COSN8589167 3326 COSMIC
COSN216707 3388 COSMIC
COSN29676829 3566 COSMIC
COSN8589166 3724 COSMIC
COSN30544867 3760 COSMIC
COSN30539769 3849 COSMIC
COSN28201248 3850 COSMIC
COSN25997035 3882 COSMIC
COSN31527755 3918 COSMIC
COSN31565972 4117 COSMIC
COSN6266553 4176 COSMIC
COSN21343001 4190 COSMIC
COSN25683441 4209 COSMIC
COSN20699964 4210 COSMIC
COSN31513722 4339 COSMIC
COSN31611122 4353 COSMIC
COSN26555388 4369 COSMIC
COSN31487982 4626 COSMIC
COSN6639890 4627 COSMIC
COSN1668674 4752 COSMIC
COSN24304866 4850 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1246730445 1 dbSNP
rs575421828 2 dbSNP
rs760505351 4 dbSNP
rs773146276 5 dbSNP
rs373415349 6 dbSNP
rs1479163667 8 dbSNP
rs748104311 9 dbSNP
rs771778919 14 dbSNP
rs774221911 14 dbSNP
rs978705292 15 dbSNP
rs557237892 16 dbSNP
rs745988091 17 dbSNP
rs538615582 18 dbSNP
rs1387270780 19 dbSNP
rs757505754 20 dbSNP
rs1291545975 21 dbSNP
rs1454596758 22 dbSNP
rs1431346967 25 dbSNP
rs747313521 26 dbSNP
rs1167497760 27 dbSNP
rs778094807 30 dbSNP
rs758752292 31 dbSNP
rs1201700269 33 dbSNP
rs753213502 34 dbSNP
rs1406953596 40 dbSNP
rs779336523 41 dbSNP
rs754460321 44 dbSNP
rs1208466988 45 dbSNP
rs753319079 48 dbSNP
rs1351244067 50 dbSNP
rs766063392 51 dbSNP
rs1369499965 52 dbSNP
rs1276958844 86 dbSNP
rs945558480 87 dbSNP
rs571617943 90 dbSNP
rs1220349871 96 dbSNP
rs1291330086 100 dbSNP
rs989780082 103 dbSNP
rs1210204534 105 dbSNP
rs1457357583 107 dbSNP
rs1453478302 111 dbSNP
rs915362201 116 dbSNP
rs1262502148 124 dbSNP
rs1478205023 125 dbSNP
rs1195979361 126 dbSNP
rs1017304901 130 dbSNP
rs1472791727 145 dbSNP
rs989565517 148 dbSNP
rs959419956 150 dbSNP
rs547063331 152 dbSNP
rs1033693167 161 dbSNP
rs982092933 167 dbSNP
rs535112331 171 dbSNP
rs1420759694 178 dbSNP
rs1199893071 180 dbSNP
rs867600977 184 dbSNP
rs1435082176 185 dbSNP
rs559780055 188 dbSNP
rs971073942 191 dbSNP
rs1393331760 198 dbSNP
rs549574543 203 dbSNP
rs1008585010 237 dbSNP
rs764788704 245 dbSNP
rs1310609388 247 dbSNP
rs1339803395 248 dbSNP
rs1245437621 249 dbSNP
rs1190912655 254 dbSNP
rs1015506831 258 dbSNP
rs1238188391 263 dbSNP
rs1285538634 274 dbSNP
rs1488767797 274 dbSNP
rs1218870170 275 dbSNP
rs1004486411 279 dbSNP
rs1260537919 280 dbSNP
rs952580184 281 dbSNP
rs899031999 283 dbSNP
rs1037926023 287 dbSNP
rs1370525395 289 dbSNP
rs1438188179 292 dbSNP
rs1158474632 295 dbSNP
rs1380519240 298 dbSNP
rs1421215547 299 dbSNP
rs948690578 304 dbSNP
rs1027211827 316 dbSNP
rs996567460 318 dbSNP
rs1233547867 320 dbSNP
rs1332406996 324 dbSNP
rs1445739274 326 dbSNP
rs1309783559 328 dbSNP
rs1298927544 329 dbSNP
rs1439882850 331 dbSNP
rs939364613 339 dbSNP
rs927927561 341 dbSNP
rs1042514848 345 dbSNP
rs144498557 346 dbSNP
rs945442423 346 dbSNP
rs1178410525 348 dbSNP
rs1333257781 348 dbSNP
rs1239182326 349 dbSNP
rs1444702115 350 dbSNP
rs1173542040 351 dbSNP
rs1399679099 354 dbSNP
rs1466073060 358 dbSNP
rs1173867089 359 dbSNP
rs531153753 362 dbSNP
rs1465100490 367 dbSNP
rs1331709671 369 dbSNP
rs1378853347 373 dbSNP
rs899581313 374 dbSNP
rs1040713461 375 dbSNP
rs1299428632 382 dbSNP
rs1007848112 383 dbSNP
rs1467782938 387 dbSNP
rs1330792869 390 dbSNP
rs1234040076 394 dbSNP
rs1376130622 396 dbSNP
rs1198589165 402 dbSNP
rs1259058140 406 dbSNP
rs990036456 408 dbSNP
rs890738032 415 dbSNP
rs1266198842 419 dbSNP
rs756925446 422 dbSNP
rs1440679040 424 dbSNP
rs945579306 426 dbSNP
rs915428823 428 dbSNP
rs987687617 432 dbSNP
rs1402424077 434 dbSNP
rs753462891 438 dbSNP
rs1292786701 439 dbSNP
rs954401390 439 dbSNP
rs1387574229 453 dbSNP
rs1177350582 460 dbSNP
rs1338553270 462 dbSNP
rs1218516825 466 dbSNP
rs1279351421 483 dbSNP
rs1320676698 488 dbSNP
rs1457671249 493 dbSNP
rs767786252 498 dbSNP
rs1265292524 503 dbSNP
rs993290747 510 dbSNP
rs563792353 513 dbSNP
rs938103037 515 dbSNP
rs1260344031 521 dbSNP
rs1346761246 522 dbSNP
rs1015994739 524 dbSNP
rs1425674177 532 dbSNP
rs796546180 532 dbSNP
rs1012719240 534 dbSNP
rs1163731177 537 dbSNP
rs1458564234 538 dbSNP
rs894280889 538 dbSNP
rs1305225152 541 dbSNP
rs1253867446 543 dbSNP
rs372531102 543 dbSNP
rs1056980937 551 dbSNP
rs1002741881 553 dbSNP
rs1233351035 556 dbSNP
rs552057176 558 dbSNP
rs754614912 559 dbSNP
rs397959537 564 dbSNP
rs533505255 564 dbSNP
rs982147074 565 dbSNP
rs970745071 567 dbSNP
rs867036983 573 dbSNP
rs1247664666 574 dbSNP
rs1283411701 574 dbSNP
rs200160903 574 dbSNP
rs34800317 574 dbSNP
rs200395137 576 dbSNP
rs1335032249 578 dbSNP
rs1256552911 583 dbSNP
rs199876731 584 dbSNP
rs1156660992 585 dbSNP
rs1425306111 585 dbSNP
rs201962171 586 dbSNP
rs397949117 587 dbSNP
rs1347050959 589 dbSNP
rs1397845342 592 dbSNP
rs1446400471 597 dbSNP
rs200960315 597 dbSNP
rs59537098 597 dbSNP
rs1307617572 598 dbSNP
rs371982162 599 dbSNP
rs1240443290 604 dbSNP
rs1302454137 604 dbSNP
rs1420498284 610 dbSNP
rs1382575527 611 dbSNP
rs945504217 612 dbSNP
rs1176537942 613 dbSNP
rs934680914 614 dbSNP
rs1157170169 615 dbSNP
rs572582602 615 dbSNP
rs560673191 620 dbSNP
rs1439254190 621 dbSNP
rs1179519257 622 dbSNP
rs1254598504 628 dbSNP
rs569199941 631 dbSNP
rs982738875 634 dbSNP
rs1412803541 640 dbSNP
rs181198466 644 dbSNP
rs1026804786 647 dbSNP
rs1471246573 662 dbSNP
rs996616255 663 dbSNP
rs1376660558 664 dbSNP
rs1447014648 671 dbSNP
rs943524236 684 dbSNP
rs775027012 685 dbSNP
rs1019317463 693 dbSNP
rs1488381441 695 dbSNP
rs987757845 697 dbSNP
rs575405928 698 dbSNP
rs1007900314 699 dbSNP
rs141214295 702 dbSNP
rs1214172991 705 dbSNP
rs1234804356 716 dbSNP
rs1041751274 718 dbSNP
rs1477201115 726 dbSNP
rs918953831 729 dbSNP
rs1425977985 735 dbSNP
rs1009832279 742 dbSNP
rs894033333 745 dbSNP
rs1053982213 748 dbSNP
rs1169206359 761 dbSNP
rs1400270028 762 dbSNP
rs1466452531 768 dbSNP
rs972160088 769 dbSNP
rs1247137878 771 dbSNP
rs963050917 775 dbSNP
rs1435310245 782 dbSNP
rs538921770 790 dbSNP
rs532421313 791 dbSNP
rs1400852543 793 dbSNP
rs1362615346 801 dbSNP
rs577898976 802 dbSNP
rs1400477296 807 dbSNP
rs553387176 809 dbSNP
rs767030988 819 dbSNP
rs1287475142 828 dbSNP
rs983175969 831 dbSNP
rs1221141507 835 dbSNP
rs1472072064 838 dbSNP
rs539293670 843 dbSNP
rs952684573 847 dbSNP
rs1191664429 854 dbSNP
rs919843830 860 dbSNP
rs1423526680 862 dbSNP
rs975253510 867 dbSNP
rs1476063862 869 dbSNP
rs1169938777 880 dbSNP
rs1366220122 883 dbSNP
rs903078950 885 dbSNP
rs1041611677 894 dbSNP
rs963855923 900 dbSNP
rs1019368491 901 dbSNP
rs893773711 916 dbSNP
rs1374012640 919 dbSNP
rs535044364 923 dbSNP
rs1367095002 924 dbSNP
rs567732381 937 dbSNP
rs1477982929 940 dbSNP
rs1340979871 945 dbSNP
rs763543072 951 dbSNP
rs1282165410 959 dbSNP
rs1355421246 967 dbSNP
rs570608295 968 dbSNP
rs1214247219 972 dbSNP
rs1019975256 975 dbSNP
rs1011638174 977 dbSNP
rs1446186603 980 dbSNP
rs894100801 983 dbSNP
rs1290282368 988 dbSNP
rs933452314 999 dbSNP
rs1195978957 1000 dbSNP
rs1236044120 1003 dbSNP
rs1032586807 1009 dbSNP
rs1211591095 1013 dbSNP
rs1386694231 1025 dbSNP
rs1002422203 1031 dbSNP
rs1417489680 1036 dbSNP
rs1354094696 1041 dbSNP
rs769849587 1042 dbSNP
rs905362375 1043 dbSNP
rs1360633345 1054 dbSNP
rs1046574116 1059 dbSNP
rs1272627591 1060 dbSNP
rs1332079942 1063 dbSNP
rs919516875 1067 dbSNP
rs949526182 1075 dbSNP
rs1401088947 1084 dbSNP
rs1238260349 1085 dbSNP
rs537205198 1088 dbSNP
rs1285333577 1091 dbSNP
rs190022764 1092 dbSNP
rs1207013793 1104 dbSNP
rs1219318140 1106 dbSNP
rs1184522461 1108 dbSNP
rs972308563 1109 dbSNP
rs570230171 1112 dbSNP
rs547741754 1117 dbSNP
rs551730466 1127 dbSNP
rs144208232 1132 dbSNP
rs1364060939 1136 dbSNP
rs1454877415 1141 dbSNP
rs941696531 1157 dbSNP
rs1401410301 1161 dbSNP
rs1470255944 1163 dbSNP
rs186709718 1171 dbSNP
rs1374411035 1181 dbSNP
rs35078451 1192 dbSNP
rs1430511427 1198 dbSNP
rs1332071791 1200 dbSNP
rs1325884897 1204 dbSNP
rs1404103679 1205 dbSNP
rs1336627612 1208 dbSNP
rs34098734 1210 dbSNP
rs1394391217 1216 dbSNP
rs1152781 1218 dbSNP
rs1465670273 1226 dbSNP
rs1425383983 1237 dbSNP
rs181569390 1238 dbSNP
rs1035509244 1244 dbSNP
rs919894808 1246 dbSNP
rs981257357 1248 dbSNP
rs975306260 1256 dbSNP
rs1200647661 1262 dbSNP
rs942599089 1270 dbSNP
rs1420580066 1280 dbSNP
rs560609986 1284 dbSNP
rs1196052659 1288 dbSNP
rs912407085 1294 dbSNP
rs987024176 1295 dbSNP
rs1178533967 1297 dbSNP
rs1398071285 1298 dbSNP
rs1011452847 1299 dbSNP
rs1298593186 1300 dbSNP
rs1393374460 1301 dbSNP
rs189135546 1301 dbSNP
rs1020450911 1305 dbSNP
rs113101567 1306 dbSNP
rs1224248948 1306 dbSNP
rs568577056 1306 dbSNP
rs756597220 1306 dbSNP
rs530565708 1307 dbSNP
rs1199399949 1309 dbSNP
rs1218410002 1311 dbSNP
rs1320052829 1312 dbSNP
rs1252262879 1313 dbSNP
rs529258570 1318 dbSNP
rs1207719711 1319 dbSNP
rs957033214 1323 dbSNP
rs1490360925 1333 dbSNP
rs867123954 1335 dbSNP
rs1033974743 1337 dbSNP
rs1002471212 1341 dbSNP
rs1421372725 1343 dbSNP
rs933494956 1352 dbSNP
rs1184333050 1353 dbSNP
rs1345899781 1362 dbSNP
rs897957357 1364 dbSNP
rs1365243602 1366 dbSNP
rs1405619499 1371 dbSNP
rs1305111125 1375 dbSNP
rs905432650 1376 dbSNP
rs1339011422 1377 dbSNP
rs761614622 1384 dbSNP
rs1370971330 1387 dbSNP
rs1296671927 1394 dbSNP
rs1014168619 1398 dbSNP
rs887235911 1413 dbSNP
rs1449607348 1422 dbSNP
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rs942647928 1522 dbSNP
rs912459283 1530 dbSNP
rs981121411 1532 dbSNP
rs967618778 1537 dbSNP
rs577846835 1539 dbSNP
rs1382982353 1553 dbSNP
rs1247735034 1556 dbSNP
rs1236446800 1557 dbSNP
rs1315778565 1562 dbSNP
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rs778291144 1567 dbSNP
rs1482272706 1575 dbSNP
rs990502278 1576 dbSNP
rs1243539406 1610 dbSNP
rs957292980 1614 dbSNP
rs139734392 1622 dbSNP
rs913030009 1626 dbSNP
rs1159999981 1628 dbSNP
rs1347656114 1633 dbSNP
rs990307664 1637 dbSNP
rs1336419818 1641 dbSNP
rs541401732 1645 dbSNP
rs957084642 1649 dbSNP
rs889088694 1656 dbSNP
rs1030424498 1658 dbSNP
rs1306599958 1658 dbSNP
rs574089741 1664 dbSNP
rs1372228794 1676 dbSNP
rs926976080 1677 dbSNP
rs1223846304 1691 dbSNP
rs1308520256 1692 dbSNP
rs1202979545 1696 dbSNP
rs1310304410 1696 dbSNP
rs979748304 1706 dbSNP
rs1296011929 1716 dbSNP
rs76180992 1721 dbSNP
rs1196581863 1734 dbSNP
rs1440815313 1734 dbSNP
rs76152158 1735 dbSNP
rs79508438 1736 dbSNP
rs1359427467 1737 dbSNP
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rs1469880235 1742 dbSNP
rs75933888 1742 dbSNP
rs1410276668 1743 dbSNP
rs1036516632 1744 dbSNP
rs1025640684 1749 dbSNP
rs1176297320 1752 dbSNP
rs1353491504 1752 dbSNP
rs1471152667 1752 dbSNP
rs199890567 1752 dbSNP
rs1442498928 1753 dbSNP
rs1006906425 1757 dbSNP
rs1013805624 1765 dbSNP
rs1055941310 1770 dbSNP
rs1394273853 1784 dbSNP
rs1283826408 1788 dbSNP
rs756734171 1791 dbSNP
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rs537545373 1795 dbSNP
rs1045927760 1797 dbSNP
rs1025789266 1810 dbSNP
rs995564162 1811 dbSNP
rs898571354 1812 dbSNP
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rs1039701727 1838 dbSNP
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rs990018891 1860 dbSNP
rs753451943 1863 dbSNP
rs767731423 1874 dbSNP
rs1051460585 1875 dbSNP
rs1239248952 1877 dbSNP
rs1410139365 1881 dbSNP
rs945944827 1884 dbSNP
rs911151798 1885 dbSNP
rs985336447 1889 dbSNP
rs913074034 1890 dbSNP
rs1485436116 1897 dbSNP
rs1403789565 1906 dbSNP
rs1054284090 1912 dbSNP
rs1303304208 1921 dbSNP
rs763758176 1929 dbSNP
rs935761216 1930 dbSNP
rs371823643 1933 dbSNP
rs1269328098 1939 dbSNP
rs1285843309 1944 dbSNP
rs1339868682 1956 dbSNP
rs1216159794 1960 dbSNP
rs558311078 1969 dbSNP
rs1352222863 1972 dbSNP
rs1221754046 1973 dbSNP
rs1306884766 1973 dbSNP
rs1269711238 1975 dbSNP
rs1490969081 1976 dbSNP
rs1030331163 1979 dbSNP
rs755793247 1983 dbSNP
rs979799220 1984 dbSNP
rs752016748 1987 dbSNP
rs1209819529 1988 dbSNP
rs1015397817 1989 dbSNP
rs539667692 1992 dbSNP
rs1412551447 2002 dbSNP
rs1215074478 2005 dbSNP
rs1366923463 2010 dbSNP
rs887911308 2018 dbSNP
rs759671911 2020 dbSNP
rs916885967 2024 dbSNP
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rs1026259647 2039 dbSNP
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rs150910801 2058 dbSNP
rs1416074322 2061 dbSNP
rs1185815261 2065 dbSNP
rs1245547595 2065 dbSNP
rs1361635700 2065 dbSNP
rs1475043158 2074 dbSNP
rs1045385625 2075 dbSNP
rs906911669 2075 dbSNP
rs1218307189 2077 dbSNP
rs1264150421 2081 dbSNP
rs1443583747 2083 dbSNP
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rs1183856176 2085 dbSNP
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rs1018304779 2098 dbSNP
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rs1006895721 2103 dbSNP
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rs1389229269 3896 dbSNP
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rs72702620 4093 dbSNP
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rs1338750701 4135 dbSNP
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rs771876234 4502 dbSNP
rs765172389 4507 dbSNP
rs866405455 4511 dbSNP
rs930985821 4519 dbSNP
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rs1458671880 4535 dbSNP
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rs1320858103 4562 dbSNP
rs190447496 4567 dbSNP
rs1462003971 4571 dbSNP
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rs1393851603 4592 dbSNP
rs909132240 4605 dbSNP
rs1163084307 4611 dbSNP
rs1341002957 4621 dbSNP
rs770947326 4628 dbSNP
rs1266039015 4630 dbSNP
rs1327296011 4638 dbSNP
rs375191905 4638 dbSNP
rs992023998 4639 dbSNP
rs1262866908 4641 dbSNP
rs1269069060 4641 dbSNP
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rs1242020844 4644 dbSNP
rs1152780 4645 dbSNP
rs1180194568 4651 dbSNP
rs956717342 4652 dbSNP
rs931818155 4654 dbSNP
rs923888839 4659 dbSNP
rs1472497195 4698 dbSNP
rs1159427894 4730 dbSNP
rs923087741 4731 dbSNP
rs1464049020 4735 dbSNP
rs758841797 4742 dbSNP
rs868842993 4755 dbSNP
rs1231087180 4762 dbSNP
rs1402767603 4766 dbSNP
rs956453062 4768 dbSNP
rs1416582853 4771 dbSNP
rs565229131 4775 dbSNP
rs923628474 4792 dbSNP
rs979072986 4800 dbSNP
rs1228847282 4805 dbSNP
rs1216086134 4806 dbSNP
rs535598517 4807 dbSNP
rs1021877418 4809 dbSNP
rs1318969201 4811 dbSNP
rs1208048221 4816 dbSNP
rs968739559 4816 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions EF3D-AGO2
Disease MIMAT0018937
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020021. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gaagacugagguUCGGGUCa 5'
                      :|||||| 
Target 5' ----------uuGGCCCAGa 3'
 		1 - 10
Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020021
Method / RBP PAR-CLIP / AGO2
Cell line / Condition EF3D-AGO2 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000357195.3 | 3UTR | UUGGCCCAGAGGUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
68 hsa-miR-378g Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT444739 SMYD1 SET and MYND domain containing 1 2 2
MIRT456104 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT458683 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT465802 TMEM91 transmembrane protein 91 2 2
MIRT470843 PLXND1 plexin D1 2 2
MIRT497263 GRK6 G protein-coupled receptor kinase 6 2 2
MIRT497674 SYNGR1 synaptogyrin 1 2 2
MIRT498218 TLN2 talin 2 2 2
MIRT498309 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT504046 TOMM5 translocase of outer mitochondrial membrane 5 2 2
MIRT518196 CLEC4E C-type lectin domain family 4 member E 2 2
MIRT533143 WNT10A Wnt family member 10A 2 2
MIRT533540 TPR translocated promoter region, nuclear basket protein 2 2
MIRT533679 TMEM86A transmembrane protein 86A 2 2
MIRT540892 SRSF9 serine and arginine rich splicing factor 9 2 2
MIRT541329 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT541850 PLIN5 perilipin 5 2 2
MIRT551431 F2 coagulation factor II, thrombin 2 2
MIRT552105 PPP1R1A protein phosphatase 1 regulatory inhibitor subunit 1A 2 2
MIRT564912 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT568605 ACVR2A activin A receptor type 2A 2 2
MIRT572604 PAPLN papilin, proteoglycan like sulfated glycoprotein 2 2
MIRT574234 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT575688 Map1b microtubule-associated protein 1B 2 2
MIRT576643 Mill2 MHC I like leukocyte 2 1 1
MIRT609877 RAD54L2 RAD54 like 2 2 4
MIRT610057 MYBPC1 myosin binding protein C, slow type 2 2
MIRT610791 KLK2 kallikrein related peptidase 2 2 2
MIRT617175 GOSR2 golgi SNAP receptor complex member 2 2 2
MIRT617707 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT620577 WBSCR27 methyltransferase like 27 2 4
MIRT622657 POU2F3 POU class 2 homeobox 3 2 4
MIRT624561 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT634255 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634677 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT635254 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT637081 SELPLG selectin P ligand 2 2
MIRT639021 AAK1 AP2 associated kinase 1 2 2
MIRT640396 ZNF785 zinc finger protein 785 2 2
MIRT642441 CLUAP1 clusterin associated protein 1 2 2
MIRT645666 ADK adenosine kinase 2 2
MIRT646083 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT650513 UFM1 ubiquitin fold modifier 1 2 2
MIRT652474 TMEM181 transmembrane protein 181 2 2
MIRT652584 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654763 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT655200 PHAX phosphorylated adaptor for RNA export 2 2
MIRT658353 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT661820 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662190 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT664375 CYB5A cytochrome b5 type A 2 2
MIRT665025 ELK1 ELK1, ETS transcription factor 2 2
MIRT666492 SBNO1 strawberry notch homolog 1 2 2
MIRT668480 EXOSC2 exosome component 2 2 2
MIRT682768 TMEM120B transmembrane protein 120B 2 2
MIRT689628 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT691846 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT696490 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT712480 FSTL3 follistatin like 3 2 2
MIRT712780 ZNF154 zinc finger protein 154 2 2
MIRT716607 MPPED1 metallophosphoesterase domain containing 1 2 2
MIRT719357 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT719739 SLC39A11 solute carrier family 39 member 11 2 2
MIRT722569 C1orf95 stum, mechanosensory transduction mediator homolog 2 2
MIRT722838 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT733138 LINC00963 long intergenic non-protein coding RNA 963 3 0
MIRT733139 CHI3L1 chitinase 3 like 1 3 0
MIRT736944 TARBP2 TARBP2, RISC loading complex RNA binding subunit 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-378g Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-378g Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-378g Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-378g Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (500nM)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (500nM)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (2uM)
hsa-miR-378g Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (2uM)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-378g Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line
hsa-miR-378g Dabrafenib + Trametinib sensitive High Melanoma cell line
hsa-miR-378g Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line
hsa-mir-378g Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-378g Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-378g Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-378g Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-378g Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-378g Tripterygium wilfordii Hook F resistant tissue
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM36)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-378g Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-378g Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-378g Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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