pre-miRNA Information
pre-miRNA hsa-mir-3915   
Genomic Coordinates chrX: 32583656 - 32583752
Description Homo sapiens miR-3915 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3915
Sequence 21| UUGAGGAAAAGAUGGUCUUAUU |42
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs997323565 10 dbSNP
rs1192161547 15 dbSNP
rs1255075246 19 dbSNP
rs1452812574 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM30B   
Synonyms CDC50B
Description transmembrane protein 30B
Transcript NM_001017970   
Expression
Putative miRNA Targets on TMEM30B
3'UTR of TMEM30B
(miRNA target sites are highlighted)
>TMEM30B|NM_001017970|3'UTR
   1 TTCCGGCTTTCCAGGGATCCCTCCTGCTTCTTGCCAAAACTCTTGCAAGGTGCTTTTGGCATCTCCTCCTCGCCCGTCAC
  81 CCAATTCCAACCTCGCCTAGCTTTTCCTCCCTTTGTGAATGAGGGGACCAGATAAGGGAATTACCCCCCTTGCTCTTGGG
 161 GGGCTGCTAGACTGTCTTGCCGCGGGGAGGGATGTTGACTGCAGAGTGAAACATCCTTGCAAACTCTTCCCACCTCCTTC
 241 ACGACACTGAGTTGCCATGTGAGGTTCTTCAAGTCTGAGAGTGGAAGGGATCCCTATGGAGACTCCTATTAAACCCCTAT
 321 TAGAGGAAGAGATTGAGAGACCTAGCAATGTGAAGTAACAAAGATCAGGCAGCTGCAAGTGACTCCTGAATCTTGAGTCC
 401 AGGGCTTTCGCCACTACAGTACAGTGGTTTTCTTTTCTTTGGTCGGGGAGAGTGGGCTGGAATGGAGAGTGAGGCCCACA
 481 AATTACCTGCAGAGACGTGGAGGCGTGAGGGAGAACATGCTTGTTAAATATGCAGGTAGATTAGGAGACACCAAACAGAG
 561 ATTCAGACACAGTAAGGCTGGGATGAGATCCTCGAAGCTGTGTTTTAACAAACTCCACTGGAGAGTCCCATATTCCCTCA
 641 AATTTGGGAATCACGACCCTGAACCAGGTTGGGCCTGAAGCAGTCAACTGAATTCACTTTTTCGGATAGTAATTTGTTCC
 721 CAGGGGCAGTGACAACCATGATGTTCCAGGTTTGGTCTGGCACTCTGCCTTGAACGTAGGAAGCTCTTGATGATTTGTGG
 801 AATGAATTTTTAAAAAATTACTATCTGGGGAAAACTAGTTGGCATACAGAGTTGTAGGACAGGGTTTATGTGATTCATTT
 881 GATATTTTAGTATTTTGGTGTAAAAGCCAACAGGCAAACTTTGCCAGGTACTGTGTAGAAACTCGAAAATGTGAGGCCAG
 961 TTTGTACAGTTCAGAGGAAATGCTTTAACGTAGAATCAGATAGCTGGAAGAGATCTTCGAGGGAAAGTAAGTTCCCTAAA
1041 GTCACATCTATGTCTCCTAGCTCAGTGTTCTTTGTCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTA
1121 GAAAGGGCTTCATTCATACCTTTTCCCTTGGACCTGGAAAAAAAATTTTTTTTATCTTTTCAAATGAAATCTATTGATTT
1201 CTAGTAATCATATTTGAATCAATGTTAAAGCATATATAGTCTTATATGTAAACTAGATTCTTAAGATTATTTGAACCTTT
1281 GAGATGAAGTTTACACTCAACTAAAATCATTCCATTGATTTTATTGATTAACATCAATCAGTATGTTTAAAGTTATTCTA
1361 AGAAGCAATAGTTTATTTTTAAAAACCTTGTATAGCAAAATAACTTAAAACCCTTTGTGATATCATCTTACCAGTTTATT
1441 TGGTAAAAACAAACAGTTATTTGGTATTTGTCAGAATTCTTCAGTGCCTGCTATTACAGCTATTTTCCAATTACTAACTT
1521 GATTATACTCACTCAAGGCAGTGCAAGATCTTGAAGTACTTTTTAGCAGTTAAGTAATATTGAATTGTATTGAATAGTTT
1601 ACATAGTTTATTCTAGTCTTTGAAAATTACTGAACATGGACAATGTGCATGTCATTGACATCTGCCTTAGAACTTCTGGG
1681 ACAATCCTGATTCGAGAGATTCTATCCCATTATTTACATATACCAAAAATACTTTGTTAATTTAATGTGTTGGCTTCCCA
1761 ACTCCTGAACACGACACAATTTTATTATTAGATTTTGTATGGTGATTTTAGGCTATGAAAACATGATCATTATATGTATA
1841 TAGATACATTTTTATTTGTTACAAATGTTTGAGCAGCTCACTAGCCCACCCCTCCTCTATTTTGGGTAAGAGAATTTACT
1921 ACCTTTTTTAACTATGTAGTTGAGAGCAACATGTATTTTGTTATTTTTAGAATGGTCAGTATATTGCTATAAAATTTTAA
2001 ATGAGACTATGAAAGTTAAAGTATTCTGATTCTGGTTAAATTAACGAATATGGTTCCAGGCCCTGTTCTCTGGGTTTTTG
2081 AGAGAGAATAAAGGTTATGTTTGTCTTACCTTTGTTATCGAGTTTGCTGAATTCTTTTGAACGATGATCTTAAAGGCACA
2161 AACACCACCAGCCACTTTGCTAATTTCTTAATAGCAGATTTACATTGCAGCAAGAAAACCATCTTTTATAGTAACATTCA
2241 GTTAAAATGAACTCAATTCATTGTTAACTTCCTAAAACAGAATTTGAACTTTATCAACCTCAACGTGTATATAAACTAGA
2321 TAGTCCTCAATACTTTATCAACCTCAACATGTATATAAACTAGATAGTCCTCAAATACTGTTTGAATTTAATAAATGTCA
2401 ATTTAAAAATTTTTGTAGTAGTCTTCTGCATTTTACTTCAATTATAAATTGCAATTATTTATTGGATATTTTGGACTTCA
2481 AAGCAGCAGAAACTTTAAAACTGAAATGGGAAACGTTTTCCTGCAATGATCCCTGTGCTGTAACATTTTGTCTGGTGTCT
2561 CAGGCTTCCAGGTTCTTGTTGGCCTGAATTCCCTTGTTGCCCAGTAAATGTTCACTAGCTAGAAGTATCTTCAGGAAGTG
2641 AGATAGAAAAGAGTGAACCTCAACAATTGGACTGGAAATGAGCTTTGACCTAACTTTGTAAAATAAAAGCATAAAAGAGA
2721 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuauuCUGGUAGAAAAGGAGuu 5'
               | |:| |||||||||  
Target 5' acctcGCCTAGCTTTTCCTCcc 3'
90 - 111 145.00 -13.90
2
miRNA  3' uuAUUC--UGGUAGA---AAAGGAGUu 5'
            |:||  :|||| |    |||:||| 
Target 5' acTGAGTTGCCATGTGAGGTTCTTCAa 3'
246 - 272 138.00 -12.80
3
miRNA  3' uuAUUCUGGUAGAAAAGGAGUu 5'
            ||| ||:|  |  |||||| 
Target 5' taTAA-ACTAGATAGTCCTCAa 3'
2310 - 2330 127.00 -11.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN17182830 4 COSMIC
COSN6255523 13 COSMIC
COSN2529135 15 COSMIC
COSN31561176 84 COSMIC
COSN21086760 496 COSMIC
COSN24266521 881 COSMIC
COSN31628772 885 COSMIC
COSN5858490 922 COSMIC
COSN1655998 1027 COSMIC
COSN26081113 1077 COSMIC
COSN29996951 1133 COSMIC
COSN14842638 1165 COSMIC
COSN8155749 1165 COSMIC
COSN31960994 1424 COSMIC
COSN9616457 1533 COSMIC
COSN7023362 1588 COSMIC
COSN23096552 1708 COSMIC
COSN23151113 1821 COSMIC
COSN26449261 1823 COSMIC
COSN31960993 2254 COSMIC
COSN31960992 2372 COSMIC
COSN20111384 2390 COSMIC
COSN9616456 2542 COSMIC
COSN31960991 2661 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765323732 2 dbSNP
rs376567411 4 dbSNP
rs761167575 7 dbSNP
rs1276169639 11 dbSNP
rs777131357 14 dbSNP
rs1344100365 16 dbSNP
rs776284329 22 dbSNP
rs78673621 23 dbSNP
rs761089733 24 dbSNP
rs1327064555 26 dbSNP
rs775769330 34 dbSNP
rs770575118 35 dbSNP
rs1174324083 37 dbSNP
rs367958663 43 dbSNP
rs202052426 46 dbSNP
rs1186801946 51 dbSNP
rs563123537 56 dbSNP
rs192586437 57 dbSNP
rs1264917630 71 dbSNP
rs1163339077 72 dbSNP
rs1348564977 76 dbSNP
rs1455491776 90 dbSNP
rs1289675474 92 dbSNP
rs920351967 94 dbSNP
rs1038985041 102 dbSNP
rs1383394600 105 dbSNP
rs143113636 107 dbSNP
rs149091319 110 dbSNP
rs375847396 114 dbSNP
rs1225923175 115 dbSNP
rs1259807460 124 dbSNP
rs911503759 126 dbSNP
rs1204985011 129 dbSNP
rs993642429 136 dbSNP
rs188890345 137 dbSNP
rs898019881 146 dbSNP
rs1016459684 147 dbSNP
rs1183533967 150 dbSNP
rs955583431 157 dbSNP
rs1292419634 159 dbSNP
rs922596761 159 dbSNP
rs988793816 160 dbSNP
rs956352745 161 dbSNP
rs1033093966 162 dbSNP
rs1000015382 164 dbSNP
rs1166265338 164 dbSNP
rs1406997818 164 dbSNP
rs1451754047 164 dbSNP
rs1301017888 168 dbSNP
rs572113759 169 dbSNP
rs558407731 174 dbSNP
rs545082071 177 dbSNP
rs1224108970 178 dbSNP
rs1306075867 181 dbSNP
rs1378542972 182 dbSNP
rs1201711269 183 dbSNP
rs1225030679 187 dbSNP
rs145221788 189 dbSNP
rs1022730577 192 dbSNP
rs888109876 193 dbSNP
rs895702269 194 dbSNP
rs1044071966 200 dbSNP
rs1236250596 208 dbSNP
rs948441942 209 dbSNP
rs1026435846 215 dbSNP
rs895580144 224 dbSNP
rs1471724810 233 dbSNP
rs779256729 242 dbSNP
rs577394223 243 dbSNP
rs1356175202 246 dbSNP
rs1037440603 247 dbSNP
rs943069378 254 dbSNP
rs1406326231 255 dbSNP
rs889975268 258 dbSNP
rs557573116 273 dbSNP
rs1322157524 300 dbSNP
rs1204647349 306 dbSNP
rs1221125647 307 dbSNP
rs1338548152 308 dbSNP
rs1275195828 309 dbSNP
rs1309773478 312 dbSNP
rs1235399124 315 dbSNP
rs537754573 319 dbSNP
rs1201810122 320 dbSNP
rs1269897828 325 dbSNP
rs1049881992 341 dbSNP
rs1170888877 345 dbSNP
rs1421810388 347 dbSNP
rs1409917308 366 dbSNP
rs1410404753 367 dbSNP
rs150011295 372 dbSNP
rs1304718688 375 dbSNP
rs1426337413 378 dbSNP
rs934244184 379 dbSNP
rs1344447484 380 dbSNP
rs1433942721 388 dbSNP
rs924472335 397 dbSNP
rs370502468 400 dbSNP
rs139504264 409 dbSNP
rs757888969 410 dbSNP
rs1174677782 411 dbSNP
rs551803514 415 dbSNP
rs986160469 417 dbSNP
rs954932179 423 dbSNP
rs1225144008 432 dbSNP
rs1340419415 432 dbSNP
rs537960658 437 dbSNP
rs934659875 438 dbSNP
rs1377575241 442 dbSNP
rs566062219 450 dbSNP
rs925917753 460 dbSNP
rs1030352151 462 dbSNP
rs1183476691 471 dbSNP
rs552418706 475 dbSNP
rs972154120 481 dbSNP
rs112058576 483 dbSNP
rs1475798972 483 dbSNP
rs539110017 487 dbSNP
rs1388219479 496 dbSNP
rs1426521211 497 dbSNP
rs1163980305 498 dbSNP
rs1473629590 513 dbSNP
rs1364799123 516 dbSNP
rs978835468 523 dbSNP
rs970077504 524 dbSNP
rs1319887167 525 dbSNP
rs752206827 526 dbSNP
rs1429443334 531 dbSNP
rs1022761720 534 dbSNP
rs546336256 549 dbSNP
rs1443199632 552 dbSNP
rs1248874209 558 dbSNP
rs1316095630 566 dbSNP
rs1356094360 585 dbSNP
rs1208244563 590 dbSNP
rs533096646 590 dbSNP
rs1286632916 597 dbSNP
rs1447845841 610 dbSNP
rs1279145520 611 dbSNP
rs1201964681 613 dbSNP
rs1006846172 631 dbSNP
rs1246339181 635 dbSNP
rs1446360457 637 dbSNP
rs1184151109 640 dbSNP
rs1384308663 640 dbSNP
rs1471707059 650 dbSNP
rs1342543163 654 dbSNP
rs960271732 655 dbSNP
rs796256752 659 dbSNP
rs767168130 661 dbSNP
rs1317940692 664 dbSNP
rs1228900260 665 dbSNP
rs1454984323 672 dbSNP
rs1337993551 673 dbSNP
rs1351852932 674 dbSNP
rs1285897136 685 dbSNP
rs1452899877 686 dbSNP
rs1281678061 689 dbSNP
rs1351672400 690 dbSNP
rs1228081062 697 dbSNP
rs1266258136 702 dbSNP
rs1023025917 703 dbSNP
rs1204180371 705 dbSNP
rs993600216 706 dbSNP
rs777873005 709 dbSNP
rs1183682439 713 dbSNP
rs569533037 720 dbSNP
rs1441114739 726 dbSNP
rs898842305 730 dbSNP
rs1340706358 731 dbSNP
rs1430738027 743 dbSNP
rs1015912013 747 dbSNP
rs1012603821 749 dbSNP
rs1335720162 754 dbSNP
rs1413149169 759 dbSNP
rs1402076087 760 dbSNP
rs1394874814 761 dbSNP
rs895508215 762 dbSNP
rs968829698 762 dbSNP
rs1405762809 774 dbSNP
rs1056895115 776 dbSNP
rs1459261745 778 dbSNP
rs934436353 784 dbSNP
rs549538559 785 dbSNP
rs1325698204 786 dbSNP
rs902979093 788 dbSNP
rs1255528267 795 dbSNP
rs146800793 804 dbSNP
rs934885755 812 dbSNP
rs192983042 813 dbSNP
rs1482622578 817 dbSNP
rs1473127469 819 dbSNP
rs143886686 823 dbSNP
rs948842340 835 dbSNP
rs188245392 844 dbSNP
rs564872864 845 dbSNP
rs1197540450 863 dbSNP
rs754612813 869 dbSNP
rs933320469 870 dbSNP
rs992645171 872 dbSNP
rs544809774 879 dbSNP
rs1170156914 881 dbSNP
rs564062387 888 dbSNP
rs576171061 890 dbSNP
rs375545123 900 dbSNP
rs923311218 902 dbSNP
rs140165272 923 dbSNP
rs1440527378 926 dbSNP
rs959889372 926 dbSNP
rs1306620366 933 dbSNP
rs751188257 945 dbSNP
rs1405851607 951 dbSNP
rs1242278583 969 dbSNP
rs1300605977 973 dbSNP
rs1329421825 982 dbSNP
rs1229465655 983 dbSNP
rs962106622 989 dbSNP
rs1362002880 990 dbSNP
rs1293753686 992 dbSNP
rs1016354624 993 dbSNP
rs1208889734 993 dbSNP
rs1264577229 1010 dbSNP
rs1429811561 1011 dbSNP
rs1195895146 1014 dbSNP
rs150699310 1018 dbSNP
rs970022056 1054 dbSNP
rs1023872100 1056 dbSNP
rs1449434961 1057 dbSNP
rs756168015 1061 dbSNP
rs1266099536 1067 dbSNP
rs1222721746 1069 dbSNP
rs1356384395 1070 dbSNP
rs1285629713 1072 dbSNP
rs1445311771 1073 dbSNP
rs199610557 1076 dbSNP
rs1473624613 1077 dbSNP
rs868712396 1078 dbSNP
rs1458544286 1080 dbSNP
rs61512805 1080 dbSNP
rs1296433256 1081 dbSNP
rs1316826386 1086 dbSNP
rs963583742 1086 dbSNP
rs1359898865 1088 dbSNP
rs1220326238 1090 dbSNP
rs1387094809 1090 dbSNP
rs1263339332 1096 dbSNP
rs1158941674 1100 dbSNP
rs1406049169 1101 dbSNP
rs1416002827 1103 dbSNP
rs1014282818 1104 dbSNP
rs1161730716 1104 dbSNP
rs1486671089 1115 dbSNP
rs1163478935 1117 dbSNP
rs1164573858 1117 dbSNP
rs1187233631 1117 dbSNP
rs1205174576 1117 dbSNP
rs1246952843 1117 dbSNP
rs1387425483 1117 dbSNP
rs1389117513 1117 dbSNP
rs1424778857 1117 dbSNP
rs1464831718 1117 dbSNP
rs1491195132 1117 dbSNP
rs150543810 1117 dbSNP
rs368741788 1117 dbSNP
rs71117806 1117 dbSNP
rs757963133 1117 dbSNP
rs770734507 1117 dbSNP
rs866113860 1117 dbSNP
rs1489939323 1118 dbSNP
rs1421042844 1122 dbSNP
rs1160191503 1123 dbSNP
rs1411283919 1124 dbSNP
rs959692202 1126 dbSNP
rs543993729 1135 dbSNP
rs998570934 1137 dbSNP
rs1178741554 1138 dbSNP
rs1359641595 1140 dbSNP
rs575078713 1145 dbSNP
rs1444222064 1153 dbSNP
rs555010298 1165 dbSNP
rs1007224341 1166 dbSNP
rs1030066243 1166 dbSNP
rs12890078 1166 dbSNP
rs529998209 1173 dbSNP
rs1313281437 1174 dbSNP
rs544259947 1174 dbSNP
rs1254567119 1178 dbSNP
rs888973493 1193 dbSNP
rs1050360209 1201 dbSNP
rs1183109487 1211 dbSNP
rs561203553 1216 dbSNP
rs558880142 1217 dbSNP
rs923237691 1219 dbSNP
rs1471757374 1234 dbSNP
rs1291371432 1236 dbSNP
rs781426698 1244 dbSNP
rs1201682373 1245 dbSNP
rs1053658781 1247 dbSNP
rs1413781500 1248 dbSNP
rs1173904772 1250 dbSNP
rs999125188 1258 dbSNP
rs538780460 1278 dbSNP
rs940751540 1288 dbSNP
rs909320023 1293 dbSNP
rs1358275574 1299 dbSNP
rs1348232970 1300 dbSNP
rs1406449890 1306 dbSNP
rs1274858638 1309 dbSNP
rs569770367 1314 dbSNP
rs1219119666 1330 dbSNP
rs1299852309 1338 dbSNP
rs549573124 1340 dbSNP
rs1206278747 1341 dbSNP
rs985305809 1349 dbSNP
rs1043080826 1364 dbSNP
rs969570806 1366 dbSNP
rs1482189757 1379 dbSNP
rs1225024414 1386 dbSNP
rs1247297694 1391 dbSNP
rs1051388 1393 dbSNP
rs375737028 1414 dbSNP
rs1189592901 1421 dbSNP
rs1421532159 1423 dbSNP
rs1450079653 1431 dbSNP
rs549336670 1432 dbSNP
rs1288829863 1437 dbSNP
rs1437780097 1444 dbSNP
rs1351748053 1445 dbSNP
rs1426087561 1456 dbSNP
rs567118363 1458 dbSNP
rs1051389 1459 dbSNP
rs1321666394 1460 dbSNP
rs992383267 1466 dbSNP
rs916026985 1467 dbSNP
rs1424025512 1484 dbSNP
rs1391035067 1487 dbSNP
rs1057231549 1500 dbSNP
rs960954295 1502 dbSNP
rs938739360 1510 dbSNP
rs2351806 1518 dbSNP
rs998538480 1530 dbSNP
rs1297254457 1549 dbSNP
rs972271343 1553 dbSNP
rs1230191149 1558 dbSNP
rs1290829610 1563 dbSNP
rs967057326 1565 dbSNP
rs1021359373 1567 dbSNP
rs1243972049 1569 dbSNP
rs867871834 1572 dbSNP
rs1465243789 1580 dbSNP
rs76584614 1585 dbSNP
rs1388044790 1586 dbSNP
rs539060627 1590 dbSNP
rs1446250790 1596 dbSNP
rs1163677425 1605 dbSNP
rs1185905690 1610 dbSNP
rs1478305938 1616 dbSNP
rs1403317537 1618 dbSNP
rs551327495 1634 dbSNP
rs1388748362 1635 dbSNP
rs888954945 1647 dbSNP
rs1023473306 1666 dbSNP
rs1436380071 1670 dbSNP
rs1320510945 1684 dbSNP
rs1218746155 1691 dbSNP
rs141921436 1693 dbSNP
rs997356024 1694 dbSNP
rs953010327 1703 dbSNP
rs1355893256 1710 dbSNP
rs545048360 1719 dbSNP
rs901782834 1724 dbSNP
rs1036297795 1738 dbSNP
rs940678052 1739 dbSNP
rs956624236 1745 dbSNP
rs1483843136 1749 dbSNP
rs1246093827 1750 dbSNP
rs909234330 1753 dbSNP
rs761767495 1754 dbSNP
rs1236744139 1764 dbSNP
rs948138182 1765 dbSNP
rs562614207 1772 dbSNP
rs1159946342 1774 dbSNP
rs1220381241 1776 dbSNP
rs1412012406 1778 dbSNP
rs1370369510 1779 dbSNP
rs1456226529 1784 dbSNP
rs1156366037 1789 dbSNP
rs1273529378 1797 dbSNP
rs1387085975 1810 dbSNP
rs182533804 1828 dbSNP
rs1371203832 1830 dbSNP
rs992340273 1832 dbSNP
rs1290464714 1839 dbSNP
rs1351392232 1841 dbSNP
rs1227832075 1843 dbSNP
rs1266392781 1844 dbSNP
rs1230825394 1848 dbSNP
rs939558998 1858 dbSNP
rs1169477099 1863 dbSNP
rs924169927 1867 dbSNP
rs1440519429 1878 dbSNP
rs776622025 1887 dbSNP
rs978367218 1889 dbSNP
rs148562598 1902 dbSNP
rs1479841640 1905 dbSNP
rs1356303511 1910 dbSNP
rs1021751102 1912 dbSNP
rs989878364 1917 dbSNP
rs953258410 1919 dbSNP
rs1251868843 1921 dbSNP
rs1013094738 1944 dbSNP
rs1173702601 1960 dbSNP
rs1401881205 1964 dbSNP
rs1413097035 1974 dbSNP
rs894497042 1975 dbSNP
rs1028798361 1978 dbSNP
rs1286470662 1989 dbSNP
rs1057431320 2000 dbSNP
rs1183972053 2003 dbSNP
rs561517502 2004 dbSNP
rs1274207252 2009 dbSNP
rs760800641 2013 dbSNP
rs901709146 2018 dbSNP
rs775568836 2023 dbSNP
rs1482490550 2034 dbSNP
rs1202587835 2036 dbSNP
rs1314262370 2046 dbSNP
rs1268786370 2058 dbSNP
rs1433287062 2063 dbSNP
rs1277162083 2071 dbSNP
rs1036236899 2072 dbSNP
rs73310576 2081 dbSNP
rs1351241728 2087 dbSNP
rs1453193862 2089 dbSNP
rs1170867207 2092 dbSNP
rs1371576428 2109 dbSNP
rs1290272576 2117 dbSNP
rs189548836 2118 dbSNP
rs1392911497 2119 dbSNP
rs1387405350 2120 dbSNP
rs1323053000 2128 dbSNP
rs1329260815 2131 dbSNP
rs986058260 2134 dbSNP
rs1049538521 2138 dbSNP
rs186700893 2141 dbSNP
rs544963572 2142 dbSNP
rs1466379097 2143 dbSNP
rs922971587 2144 dbSNP
rs948133119 2145 dbSNP
rs1329202323 2149 dbSNP
rs1469208901 2166 dbSNP
rs1012122483 2167 dbSNP
rs956522866 2169 dbSNP
rs1031152066 2179 dbSNP
rs1168841162 2182 dbSNP
rs1412152490 2183 dbSNP
rs1160751136 2191 dbSNP
rs1370410511 2197 dbSNP
rs370516145 2200 dbSNP
rs1056583958 2204 dbSNP
rs545976453 2205 dbSNP
rs1249411969 2210 dbSNP
rs1182045646 2214 dbSNP
rs1437134857 2221 dbSNP
rs1364430922 2223 dbSNP
rs1432595190 2235 dbSNP
rs576016680 2260 dbSNP
rs1314691887 2262 dbSNP
rs1321939220 2264 dbSNP
rs556283464 2283 dbSNP
rs1484468024 2289 dbSNP
rs939485494 2293 dbSNP
rs1241664594 2295 dbSNP
rs1263101313 2297 dbSNP
rs536322129 2302 dbSNP
rs1330645224 2303 dbSNP
rs924137336 2304 dbSNP
rs1330418691 2305 dbSNP
rs977589988 2307 dbSNP
rs567155016 2310 dbSNP
rs1021727031 2312 dbSNP
rs1013122595 2317 dbSNP
rs1313739849 2319 dbSNP
rs1397974110 2321 dbSNP
rs1381134975 2323 dbSNP
rs894694976 2333 dbSNP
rs116107681 2336 dbSNP
rs914211880 2337 dbSNP
rs897932957 2341 dbSNP
rs990237623 2346 dbSNP
rs74541115 2348 dbSNP
rs1362681021 2350 dbSNP
rs1165108613 2351 dbSNP
rs541904448 2360 dbSNP
rs1310167376 2365 dbSNP
rs1028681819 2374 dbSNP
rs887613733 2383 dbSNP
rs5809087 2397 dbSNP
rs571471962 2403 dbSNP
rs551378107 2410 dbSNP
rs1329010201 2411 dbSNP
rs1214281049 2420 dbSNP
rs761084980 2422 dbSNP
rs143577620 2427 dbSNP
rs965842916 2428 dbSNP
rs34741163 2431 dbSNP
rs1181684370 2435 dbSNP
rs975798944 2443 dbSNP
rs1473731934 2445 dbSNP
rs775069942 2459 dbSNP
rs1182974830 2461 dbSNP
rs1014750720 2462 dbSNP
rs1203859402 2465 dbSNP
rs1417167079 2479 dbSNP
rs1004721741 2488 dbSNP
rs1178184425 2490 dbSNP
rs1359475158 2501 dbSNP
rs1465341650 2502 dbSNP
rs1310888223 2503 dbSNP
rs1372019363 2505 dbSNP
rs570460567 2507 dbSNP
rs887704176 2508 dbSNP
rs1485606711 2510 dbSNP
rs1370579622 2513 dbSNP
rs1222515701 2514 dbSNP
rs549133956 2514 dbSNP
rs183132113 2515 dbSNP
rs1209845750 2521 dbSNP
rs1247331902 2526 dbSNP
rs1357559352 2532 dbSNP
rs34364570 2534 dbSNP
rs1012642443 2540 dbSNP
rs1206146748 2545 dbSNP
rs1251124820 2548 dbSNP
rs116971243 2550 dbSNP
rs1056553283 2563 dbSNP
rs1193040567 2564 dbSNP
rs1425747904 2566 dbSNP
rs541568091 2572 dbSNP
rs1322517988 2575 dbSNP
rs967729418 2579 dbSNP
rs902642555 2597 dbSNP
rs1042589653 2598 dbSNP
rs946962005 2603 dbSNP
rs1380439325 2608 dbSNP
rs527987377 2609 dbSNP
rs749818913 2614 dbSNP
rs1050035051 2616 dbSNP
rs1352446466 2617 dbSNP
rs1383695122 2627 dbSNP
rs112790253 2631 dbSNP
rs1293673003 2637 dbSNP
rs1458937708 2638 dbSNP
rs1363349850 2640 dbSNP
rs921637404 2650 dbSNP
rs1162484081 2659 dbSNP
rs1344796551 2662 dbSNP
rs1229351014 2667 dbSNP
rs759217537 2670 dbSNP
rs1036334297 2675 dbSNP
rs76745603 2678 dbSNP
rs1247426630 2687 dbSNP
rs965775080 2692 dbSNP
rs1191730210 2696 dbSNP
rs907684103 2711 dbSNP
rs1249608240 2713 dbSNP
rs1428427976 2723 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuauucugguagaaaAGGAGUu 5'
                         |||||| 
Target 5' ---------------UCCUCAa 3'
1 - 7
Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000555868.1 | 3UTR | UCCUCAAUACUUUAUCAACCUCAACAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
111 hsa-miR-3915 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059544 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 2 2
MIRT081703 ZNF507 zinc finger protein 507 2 2
MIRT083311 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT119046 SFT2D3 SFT2 domain containing 3 2 2
MIRT189381 TXLNA taxilin alpha 2 4
MIRT195895 C16ORF72 chromosome 16 open reading frame 72 2 6
MIRT223807 OXR1 oxidation resistance 1 2 2
MIRT292954 ZNF146 zinc finger protein 146 2 4
MIRT293949 RPL13A ribosomal protein L13a 2 6
MIRT300900 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT339332 SESN2 sestrin 2 2 2
MIRT349304 ZNF317 zinc finger protein 317 2 2
MIRT364736 TOR1B torsin family 1 member B 2 2
MIRT366233 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT384605 CLIC4 chloride intracellular channel 4 2 2
MIRT401745 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT443169 UBL3 ubiquitin like 3 2 2
MIRT444215 METTL12 methyltransferase like 12 2 2
MIRT444375 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445340 TCEANC transcription elongation factor A N-terminal and central domain containing 2 2
MIRT445474 KDM6A lysine demethylase 6A 2 2
MIRT445598 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445630 TMEM50A transmembrane protein 50A 2 2
MIRT446012 VNN1 vanin 1 2 2
MIRT446115 ASTN1 astrotactin 1 2 2
MIRT446248 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT446382 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446940 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446967 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT447178 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447209 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447237 IHH indian hedgehog 2 2
MIRT447807 EMX1 empty spiracles homeobox 1 2 2
MIRT447853 RRP8 ribosomal RNA processing 8 2 4
MIRT448054 MMP15 matrix metallopeptidase 15 2 2
MIRT448094 RASD2 RASD family member 2 2 2
MIRT448704 KLHL11 kelch like family member 11 2 2
MIRT448851 FEM1C fem-1 homolog C 2 2
MIRT449488 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT449785 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450774 PDE3A phosphodiesterase 3A 2 2
MIRT451124 ZNF99 zinc finger protein 99 2 2
MIRT452676 GPR156 G protein-coupled receptor 156 2 2
MIRT452888 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453188 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453353 ZNF3 zinc finger protein 3 2 2
MIRT454502 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454629 FAM83H family with sequence similarity 83 member H 2 2
MIRT455183 AGTRAP angiotensin II receptor associated protein 2 2
MIRT458204 FOXL2 forkhead box L2 2 2
MIRT458723 CES2 carboxylesterase 2 2 2
MIRT458942 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460304 FLCN folliculin 2 2
MIRT460989 SYT7 synaptotagmin 7 2 2
MIRT461697 ZNF426 zinc finger protein 426 2 2
MIRT461903 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462193 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT462290 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463795 XPOT exportin for tRNA 2 2
MIRT464649 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465911 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465992 TMEM189 transmembrane protein 189 2 4
MIRT466302 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT466575 TBC1D2B TBC1 domain family member 2B 2 2
MIRT470558 POU2F1 POU class 2 homeobox 1 2 2
MIRT471333 PERP PERP, TP53 apoptosis effector 2 2
MIRT471659 PALM2 paralemmin 2 2 2
MIRT472363 TSPAN1 tetraspanin 1 2 2
MIRT473468 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT474702 KIF3A kinesin family member 3A 2 2
MIRT476067 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT476077 GRB2 growth factor receptor bound protein 2 2 2
MIRT476423 GBA2 glucosylceramidase beta 2 2 2
MIRT476463 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477877 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT478240 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT479460 CDK6 cyclin dependent kinase 6 2 2
MIRT481030 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT491496 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT497585 SLC23A1 solute carrier family 23 member 1 2 2
MIRT498542 TMEM30B transmembrane protein 30B 2 2
MIRT499263 NBPF11 NBPF member 11 2 2
MIRT504698 ZNF117 zinc finger protein 117 2 2
MIRT511288 KLHL15 kelch like family member 15 2 4
MIRT523121 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT529601 H1F0 H1 histone family member 0 2 2
MIRT533481 TRIM71 tripartite motif containing 71 2 2
MIRT535571 NUP37 nucleoporin 37 2 4
MIRT537869 EDA2R ectodysplasin A2 receptor 2 2
MIRT538010 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552681 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT554986 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT556659 KMT2D lysine methyltransferase 2D 2 4
MIRT557437 GTPBP2 GTP binding protein 2 2 2
MIRT560813 CRTAP cartilage associated protein 2 2
MIRT562115 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563103 IFRD2 interferon related developmental regulator 2 2 2
MIRT574199 LMNB1 lamin B1 2 2
MIRT623920 FMNL3 formin like 3 2 2
MIRT626551 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT645458 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT649082 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT659477 CLDN1 claudin 1 2 2
MIRT667950 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT701981 MIER3 MIER family member 3 2 2
MIRT708694 TFDP2 transcription factor Dp-2 2 2
MIRT709649 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710090 FAM229B family with sequence similarity 229 member B 2 2
MIRT718396 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT724972 TNS1 tensin 1 2 2
MIRT756050 HRH4 histamine receptor H4 2 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3915 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3915 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3915 Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3915 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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