miRTarBase - #MIRT499264


—
pre-miRNA Information
pre-miRNA hsa-mir-4763   
Genomic Coordinates chr22: 46113566 - 46113657
Description Homo sapiens miR-4763 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4763-5p
Sequence 19| CGCCUGCCCAGCCCUCCUGCU |39
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs374776264 1 dbSNP
rs1174502793 2 dbSNP
rs966122637 3 dbSNP
rs891363409 6 dbSNP
rs1303008773 8 dbSNP
rs1446379219 11 dbSNP
rs1410535134 13 dbSNP
rs1424733379 14 dbSNP
rs1372551711 16 dbSNP
rs756995936 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NBPF11   
Synonyms NBPF24
Description NBPF member 11
Transcript NM_183372   
Expression
Putative miRNA Targets on NBPF11
3'UTR of NBPF11
(miRNA target sites are highlighted)		 
>NBPF11|NM_183372|3'UTR
   1 TGGAAGTGGAAGTGCCTGAAGTCTTACAGGACTCACTGGATAGATATTATTCGACTCCATCAATGTACTTTGAACTACCT
  81 GACTCATTCCAGCACTACAGAAGTGTGTTTTACTCATTTGAGGAACAGCACATCAGCTTTGCCCTTGACATGGACAATAG
 161 GTTTTTTACTTTGACGGTGAGAAGTCTCCACCTGGTCTTCCAGATGGGAGTCATATTCCCACAATAAGCAGCCCTTACTA
 241 AGCCGAGAGGTGTCATTCCTGCAGGCAGGACCTATAGGCACCTGAAGATTTGAATGAAACTATAGTTCCATTTGGAAGCC
 321 CAGACATAGGATGGGTCAGTGGGCATGGCTCTATTCCTATTCTCAGAGCATGCCAGTGGCAACCTGTGCTCAGTCTGAAG
 401 ACAATGGACCCACGTTAGGTGTGACACGTTCACATAACTGTGCAGCACATGCCGGGAGTGATCAGTCGGACATTTTAATT
 481 TGAACCACGTATCTCTGGGTAGCTACAAAATTCCTCAGGGATTTCATTTTGCAGGCATGTCTCTGAGCTTCTATACCTGC
 561 TCAAGGTCAGTGTCATCTTTGTGTTTAGCTCATCCAAAGGTGTTACCCTGGTTTCAATGAACCTAACCTCATTCTTTGTG
 641 TCTTCAGTGTTGGCTTGTTTTAGCTGATCCATCTGTAACACAGGAGGGATCCTTGGCTGAGGATTGTATTTCAGAACCAC
 721 CAACTGCTCTTGACAATTGTTAACCCGCTAGGCTCCTTTGGTTAGAGAAGCCACAGTCCTTCAGCCTCCAATTGGTGTCA
 801 GTACTTAGGAAGACCACAGCTAGATGGACAAACAGCATTGGGAGGCCTTAGCCCTGCTCCTCTCAATTCCATCCTGTAGA
 881 GAACAGGAGTCAGGAGCCGCTGGCAGGAGACAGCATGTCACCCAGGACTCTGCCGGTGCAGAATATGAGCAATGCCATGT
 961 TCTTGCAGAAAACGCTTAGCCTGAGTTTCATAGGAGGTAATCACCAGACAACTGCAGAATGTAGAACACTGAGCAGGACA
1041 ACTGACCTGTCTCCTTCACATAGTCCATATCACCACAAATCACACAACAAAAAGGAGAAGAGATATTTTGGGTTGAAAAA
1121 AAGTAAAAAGATAATGTAGCTGCATTTCTTTAGTTATTTTGAACCCCAAATATTTCCTCATCTTTTTGTTGTTGTCATGG
1201 ATGGTGGTGACATGGACTTGTTTATAGAGGACAGGTCAGCTGTCTGGCTCAATGATCTACATTCTGAAGTTGTCTGAAAA
1281 TGTCTTCATAATTAAATTCAGCCTAAACTTTTTGACGGGAACACTGCAGAGACAATGCTGTGAGTTTCCAACCTCAGCCC
1361 ATCTGCGGGCAGAGAAGGTCTAGTTTGTCCAACACCATTATGATATCAGGACTGGTTACTTGGTTAAGGAGGGGTCTAGG
1441 AGATCTGTCCCTTTTAGAGACACCTTACTTATAATGAAGTACTTGGGAAAGTGGTTTTCAAGAGTATAAATATCCTGTAT
1521 TCTAATGATCATCCTCTAAACATTTTATCATTTATTAATCCTCCCTGCCTGTGTCTATTATTATATTCATATCTCTACGC
1601 TGCAAATTTTGGGTCTCAATTTTTACTGTGCCTTTGTTTTTACTAGTGTCTGCTGTTGCAAAAAGAAGAAAACATTCTTT
1681 GCCTGAGTTTTAATTTTTGTCCAAAGTTAATTTTAATCTATACAATTAAAACCTTTTGCCTATCACTCTGGACTTTTGGA
1761 TTGTTTTTTACATTCAGTGTTATAATATTTGATTATGCTGATTGGTTTTGGTGGGTACTGATGCGAATTAATAAAAACAT
1841 TTCATTTCCAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGUCCUC-CCGACCCGUCCgc 5'
            ||||||  ||| ||||||  
Target 5' gtCAGGAGCCGCT-GGCAGGag 3'
 889 - 909 146.00 -24.00
2 
miRNA  3' ucGUCCU-CCCG---ACCCGU-CCGc 5'
            :|||| |||:   |||||| ||| 
Target 5' caTAGGATGGGTCAGTGGGCATGGCt 3'
 325 - 350 135.00 -23.90
3 
miRNA  3' ucGUCCUCC-C------GAC--CCGUCCgc 5'
            |: |||| |      |||  ||||||  
Target 5' gcCGAGAGGTGTCATTCCTGCAGGCAGGac 3'
 242 - 271 127.00 -17.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26678047 15 COSMIC
COSN26506333 46 COSMIC
COSN26559620 53 COSMIC
COSN26582596 59 COSMIC
COSN26667052 140 COSMIC
COSN26648703 150 COSMIC
COSN26568794 181 COSMIC
COSN26666260 197 COSMIC
COSN26568517 250 COSMIC
COSN19620153 280 COSMIC
COSN26648702 303 COSMIC
COSN19612506 373 COSMIC
COSN15304815 374 COSMIC
COSN19612505 379 COSMIC
COSN19627968 468 COSMIC
COSN19637876 495 COSMIC
COSN5265248 510 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1406326116 5 dbSNP
rs1326041900 8 dbSNP
rs1343968715 9 dbSNP
rs1427988120 11 dbSNP
rs1297082569 13 dbSNP
rs1340720921 16 dbSNP
rs1220150877 21 dbSNP
rs1291205454 26 dbSNP
rs1355296319 27 dbSNP
rs1228696110 30 dbSNP
rs1291888198 39 dbSNP
rs1315098897 40 dbSNP
rs1215959643 42 dbSNP
rs1489393626 44 dbSNP
rs1185996132 46 dbSNP
rs1257098635 47 dbSNP
rs1473300724 48 dbSNP
rs1165392159 49 dbSNP
rs1400684211 52 dbSNP
rs1360681317 53 dbSNP
rs1401312277 55 dbSNP
rs1310647650 59 dbSNP
rs1339540400 61 dbSNP
rs1448443050 65 dbSNP
rs1285786007 68 dbSNP
rs1371080780 69 dbSNP
rs1239427707 92 dbSNP
rs1286662568 93 dbSNP
rs1208843571 98 dbSNP
rs1278131917 103 dbSNP
rs1443249308 104 dbSNP
rs1190020490 105 dbSNP
rs1470069393 112 dbSNP
rs1179734802 116 dbSNP
rs1382712902 117 dbSNP
rs1420944098 120 dbSNP
rs1171246154 122 dbSNP
rs1401025304 123 dbSNP
rs1414740591 126 dbSNP
rs1335935971 128 dbSNP
rs1333703833 131 dbSNP
rs1445794411 134 dbSNP
rs1309830352 136 dbSNP
rs1379060325 140 dbSNP
rs1232138419 145 dbSNP
rs1274382668 147 dbSNP
rs58374742 150 dbSNP
rs1271150594 153 dbSNP
rs1457551450 154 dbSNP
rs1199696813 157 dbSNP
rs1240540120 158 dbSNP
rs1453171045 159 dbSNP
rs1196117631 161 dbSNP
rs74714601 164 dbSNP
rs1478074603 167 dbSNP
rs1173911385 175 dbSNP
rs1393910809 176 dbSNP
rs1464869767 177 dbSNP
rs1331833608 179 dbSNP
rs1402337351 181 dbSNP
rs1322967972 183 dbSNP
rs1235527057 188 dbSNP
rs1317560428 189 dbSNP
rs1467524452 190 dbSNP
rs1209700840 191 dbSNP
rs1268688422 192 dbSNP
rs1451631556 195 dbSNP
rs61566267 197 dbSNP
rs1420979193 202 dbSNP
rs1171103788 204 dbSNP
rs1425587120 207 dbSNP
rs1459682327 209 dbSNP
rs1292813005 212 dbSNP
rs1391389295 216 dbSNP
rs1388562583 218 dbSNP
rs1316377987 220 dbSNP
rs1340107189 221 dbSNP
rs1400912465 222 dbSNP
rs1280345378 231 dbSNP
rs1333079745 232 dbSNP
rs1244548730 234 dbSNP
rs1266510485 235 dbSNP
rs1359121944 236 dbSNP
rs1211082871 237 dbSNP
rs1260482346 238 dbSNP
rs1487753819 240 dbSNP
rs1193846594 241 dbSNP
rs1421781366 243 dbSNP
rs1368963922 244 dbSNP
rs1459432927 245 dbSNP
rs1359909206 249 dbSNP
rs1420400114 250 dbSNP
rs1300224641 252 dbSNP
rs1353838948 258 dbSNP
rs1395780955 259 dbSNP
rs1313940570 261 dbSNP
rs1342764643 265 dbSNP
rs1285931510 269 dbSNP
rs1352260876 275 dbSNP
rs1216731746 276 dbSNP
rs1482099633 278 dbSNP
rs1181056016 279 dbSNP
rs77708759 280 dbSNP
rs1256682875 281 dbSNP
rs1176643277 282 dbSNP
rs1379641572 286 dbSNP
rs1440357074 289 dbSNP
rs1160578966 290 dbSNP
rs1357616955 294 dbSNP
rs1465778035 296 dbSNP
rs1404713086 299 dbSNP
rs1445043918 300 dbSNP
rs1309107687 302 dbSNP
rs1378331743 309 dbSNP
rs1240203502 328 dbSNP
rs1310070456 329 dbSNP
rs1256242018 330 dbSNP
rs1196564786 331 dbSNP
rs1237464731 334 dbSNP
rs1440298109 336 dbSNP
rs1180568705 337 dbSNP
rs1423229239 338 dbSNP
rs1432674113 339 dbSNP
rs1176982112 345 dbSNP
rs1464353256 353 dbSNP
rs1331144870 356 dbSNP
rs1401631707 356 dbSNP
rs1292297022 359 dbSNP
rs1364809303 366 dbSNP
rs1218156737 367 dbSNP
rs1313633912 368 dbSNP
rs1257247872 369 dbSNP
rs4067625 373 dbSNP
rs1200384266 374 dbSNP
rs1244920080 375 dbSNP
rs1488169177 376 dbSNP
rs28704591 379 dbSNP
rs1170404687 380 dbSNP
rs1269699782 380 dbSNP
rs1424703126 380 dbSNP
rs1467525883 382 dbSNP
rs1349844224 384 dbSNP
rs1435091611 388 dbSNP
rs1293661803 392 dbSNP
rs1346995331 400 dbSNP
rs1397819614 400 dbSNP
rs1318257891 402 dbSNP
rs1216129852 404 dbSNP
rs1287593142 409 dbSNP
rs1321087832 413 dbSNP
rs1248588051 414 dbSNP
rs1487352752 417 dbSNP
rs1193147658 418 dbSNP
rs1264199413 418 dbSNP
rs1478985889 421 dbSNP
rs1180521826 427 dbSNP
rs1413681616 428 dbSNP
rs1406521996 434 dbSNP
rs1164853002 435 dbSNP
rs1366816394 436 dbSNP
rs1417332084 437 dbSNP
rs1340775140 440 dbSNP
rs1432598194 441 dbSNP
rs1378329259 442 dbSNP
rs1228747897 443 dbSNP
rs1293876229 446 dbSNP
rs1351540222 453 dbSNP
rs1286974551 454 dbSNP
rs1449007911 456 dbSNP
rs1208449935 458 dbSNP
rs1237338772 464 dbSNP
rs1473330355 466 dbSNP
rs1184043547 467 dbSNP
rs4067627 468 dbSNP
rs1437231763 469 dbSNP
rs1157567688 473 dbSNP
rs1360739537 476 dbSNP
rs1402142425 477 dbSNP
rs1331944402 488 dbSNP
rs1317026710 489 dbSNP
rs1374628143 493 dbSNP
rs1239494148 495 dbSNP
rs1310158062 499 dbSNP
rs1353111104 501 dbSNP
rs1198873805 504 dbSNP
rs1278199638 505 dbSNP
rs1443302402 514 dbSNP
rs1206000269 519 dbSNP
rs1043522 521 dbSNP
rs1457747827 527 dbSNP
rs1177452655 531 dbSNP
rs1380452405 532 dbSNP
rs1470887114 533 dbSNP
rs1424070800 535 dbSNP
rs1414795772 537 dbSNP
rs1338518906 538 dbSNP
rs1398013448 539 dbSNP
rs1446036629 542 dbSNP
rs1331964935 546 dbSNP
rs1337549366 550 dbSNP
rs1231185878 551 dbSNP
rs1274442033 553 dbSNP
rs1346025723 556 dbSNP
rs1256622894 557 dbSNP
rs1317837105 559 dbSNP
rs1439003468 564 dbSNP
rs1196183176 570 dbSNP
rs1245750754 572 dbSNP
rs1480594162 573 dbSNP
rs1178320423 576 dbSNP
rs1421126555 583 dbSNP
rs17159383 589 dbSNP
rs1385119419 600 dbSNP
rs1323027325 604 dbSNP
rs1331884760 607 dbSNP
rs1276545846 611 dbSNP
rs1407064245 611 dbSNP
rs1317627383 615 dbSNP
rs1219666653 617 dbSNP
rs1253566082 621 dbSNP
rs1354925609 623 dbSNP
rs1207539535 624 dbSNP
rs1288614529 632 dbSNP
rs1490372806 634 dbSNP
rs1201068878 636 dbSNP
rs1260613549 637 dbSNP
rs1477347884 640 dbSNP
rs1193679572 645 dbSNP
rs1374700590 653 dbSNP
rs1456380820 657 dbSNP
rs1391455809 663 dbSNP
rs1426640359 679 dbSNP
rs1296540104 684 dbSNP
rs1340174657 688 dbSNP
rs1400970145 690 dbSNP
rs1298266457 697 dbSNP
rs1339225821 701 dbSNP
rs1244619131 714 dbSNP
rs1285320108 720 dbSNP
rs1359479651 721 dbSNP
rs1224116160 722 dbSNP
rs1283404220 732 dbSNP
rs1487787486 735 dbSNP
rs1205492610 736 dbSNP
rs1263670262 737 dbSNP
rs1186681281 739 dbSNP
rs1385822213 742 dbSNP
rs1446487925 745 dbSNP
rs1156981411 746 dbSNP
rs1290856434 747 dbSNP
rs1360116021 747 dbSNP
rs1400434954 748 dbSNP
rs1335404705 752 dbSNP
rs1385677682 755 dbSNP
rs1247508521 756 dbSNP
rs1306531908 757 dbSNP
rs1352523326 760 dbSNP
rs1239234641 761 dbSNP
rs1262137759 764 dbSNP
rs1482125965 765 dbSNP
rs1199701941 768 dbSNP
rs1243652845 770 dbSNP
rs1462641765 775 dbSNP
rs1176849908 778 dbSNP
rs1379696024 781 dbSNP
rs1419757157 786 dbSNP
rs1161487556 788 dbSNP
rs1465831888 794 dbSNP
rs1337862250 795 dbSNP
rs1408927899 799 dbSNP
rs1331266835 804 dbSNP
rs1371914998 809 dbSNP
rs1391487318 810 dbSNP
rs1308655541 812 dbSNP
rs1310124822 817 dbSNP
rs1232241057 822 dbSNP
rs1263600332 826 dbSNP
rs1325427542 827 dbSNP
rs1237513242 831 dbSNP
rs1179070442 834 dbSNP
rs1265514397 835 dbSNP
rs1432882803 838 dbSNP
rs1177598899 845 dbSNP
rs1431819104 854 dbSNP
rs1355658394 857 dbSNP
rs1462030731 859 dbSNP
rs1299441173 864 dbSNP
rs1403880833 865 dbSNP
rs1283539276 867 dbSNP
rs1347104765 878 dbSNP
rs1216598509 883 dbSNP
rs1257315913 885 dbSNP
rs1308061142 887 dbSNP
rs1206704935 897 dbSNP
rs1263829532 898 dbSNP
rs1200335177 899 dbSNP
rs1271351375 907 dbSNP
rs1477023720 912 dbSNP
rs1193457461 916 dbSNP
rs1420831762 921 dbSNP
rs1412193409 926 dbSNP
rs1163296680 928 dbSNP
rs1347550497 935 dbSNP
rs1423474555 936 dbSNP
rs1303335493 937 dbSNP
rs1367091538 949 dbSNP
rs1269443273 954 dbSNP
rs1362572276 955 dbSNP
rs1216190623 956 dbSNP
rs1310505053 957 dbSNP
rs1223365324 973 dbSNP
rs1294182275 974 dbSNP
rs1487464042 996 dbSNP
rs1216339949 1002 dbSNP
rs1242989272 1009 dbSNP
rs1476600516 1014 dbSNP
rs1180570279 1015 dbSNP
rs1413738963 1017 dbSNP
rs1443443055 1022 dbSNP
rs1163725978 1024 dbSNP
rs1386698877 1025 dbSNP
rs1417554270 1026 dbSNP
rs1317207235 1034 dbSNP
rs1345508332 1041 dbSNP
rs1432667751 1045 dbSNP
rs1300970254 1046 dbSNP
rs1381998317 1049 dbSNP
rs1246786223 1060 dbSNP
rs1317332573 1064 dbSNP
rs1351604410 1065 dbSNP
rs1285242426 1067 dbSNP
rs1449056260 1076 dbSNP
rs1208511005 1077 dbSNP
rs1237386379 1079 dbSNP
rs1462203532 1088 dbSNP
rs1183669468 1089 dbSNP
rs1386492793 1091 dbSNP
rs1437296497 1094 dbSNP
rs1157583657 1100 dbSNP
rs1402201319 1104 dbSNP
rs1173755248 1106 dbSNP
rs1453199832 1111 dbSNP
rs1338635891 1115 dbSNP
rs1374694405 1116 dbSNP
rs1441601478 1117 dbSNP
rs1280326037 1122 dbSNP
rs1217816885 1123 dbSNP
rs1353165968 1123 dbSNP
rs1324725518 1128 dbSNP
rs1206062911 1129 dbSNP
rs1236911160 1130 dbSNP
rs1435528514 1131 dbSNP
rs1180521467 1135 dbSNP
rs1233076850 1137 dbSNP
rs1470996293 1138 dbSNP
rs1189103722 1166 dbSNP
rs1470142794 1167 dbSNP
rs1398071189 1170 dbSNP
rs1409424895 1174 dbSNP
rs1329683830 1179 dbSNP
rs1434502392 1180 dbSNP
rs1282902104 1182 dbSNP
rs1346493802 1188 dbSNP
rs1225770387 1189 dbSNP
rs1256684058 1191 dbSNP
rs1339364201 1194 dbSNP
rs1194725978 1196 dbSNP
rs1273013765 1196 dbSNP
rs1439057617 1199 dbSNP
rs1196773225 1204 dbSNP
rs1267770431 1205 dbSNP
rs1480621139 1210 dbSNP
rs1201376853 1211 dbSNP
rs1371249675 1213 dbSNP
rs1475079828 1214 dbSNP
rs1168433914 1216 dbSNP
rs1398659508 1224 dbSNP
rs1403701174 1229 dbSNP
rs1302739044 1234 dbSNP
rs1366474419 1235 dbSNP
rs1407124932 1236 dbSNP
rs1276766034 1239 dbSNP
rs1326213069 1242 dbSNP
rs1228719294 1247 dbSNP
rs1272451532 1249 dbSNP
rs1340807680 1253 dbSNP
rs1219666003 1255 dbSNP
rs1490426967 1256 dbSNP
rs1224432105 1260 dbSNP
rs1259325565 1261 dbSNP
rs1446233203 1262 dbSNP
rs1193752982 1264 dbSNP
rs1374757421 1272 dbSNP
rs1442826945 1274 dbSNP
rs11810675 1290 dbSNP
rs1426865622 1294 dbSNP
rs1296597253 1299 dbSNP
rs1384638832 1301 dbSNP
rs1383154934 1302 dbSNP
rs1320812582 1309 dbSNP
rs1339273252 1310 dbSNP
rs1243114883 1311 dbSNP
rs1359538198 1312 dbSNP
rs1247646293 1313 dbSNP
rs879064171 1315 dbSNP
rs878867339 1316 dbSNP
rs1205543857 1317 dbSNP
rs1263737379 1326 dbSNP
rs1459972612 1331 dbSNP
rs1183059937 1332 dbSNP
rs1446543431 1333 dbSNP
rs1157142751 1336 dbSNP
rs1363479920 1337 dbSNP
rs1454607567 1345 dbSNP
rs1160707693 1352 dbSNP
rs1404527715 1354 dbSNP
rs1452459506 1357 dbSNP
rs1337980145 1360 dbSNP
rs1382826592 1361 dbSNP
rs1454150969 1362 dbSNP
rs1304378233 1364 dbSNP
rs1316019924 1366 dbSNP
rs1239486673 1367 dbSNP
rs1262341774 1371 dbSNP
rs1321158100 1373 dbSNP
rs1202902454 1375 dbSNP
rs1263711152 1378 dbSNP
rs1462685661 1378 dbSNP
rs1175605081 1380 dbSNP
rs1250060897 1382 dbSNP
rs1419964961 1385 dbSNP
rs1184250550 1390 dbSNP
rs79328544 1392 dbSNP
rs1469633888 1393 dbSNP
rs1177735899 1395 dbSNP
rs1408998748 1398 dbSNP
rs1467112249 1400 dbSNP
rs1296004763 1401 dbSNP
rs1391543702 1402 dbSNP
rs1289856979 1403 dbSNP
rs1343365234 1404 dbSNP
rs1283822725 1409 dbSNP
rs1325651721 1411 dbSNP
rs1202514868 1424 dbSNP
rs1250762535 1424 dbSNP
rs1481006287 1426 dbSNP
rs1197727654 1429 dbSNP
rs1267078702 1432 dbSNP
rs1200666623 1433 dbSNP
rs1432067242 1434 dbSNP
rs1427330012 1436 dbSNP
rs1170368222 1438 dbSNP
rs1353357227 1452 dbSNP
rs1309434793 1462 dbSNP
rs1404094686 1463 dbSNP
rs1283759985 1468 dbSNP
rs1369466423 1472 dbSNP
rs1043820 1473 dbSNP
rs1212673538 1474 dbSNP
rs1294795459 1477 dbSNP
rs1308115570 1478 dbSNP
rs1229758684 1481 dbSNP
rs1043825 1482 dbSNP
rs1289840511 1485 dbSNP
rs1490265603 1486 dbSNP
rs1223682651 1487 dbSNP
rs3207968 1489 dbSNP
rs3207969 1490 dbSNP
rs11485692 1492 dbSNP
rs878943291 1493 dbSNP
rs1186402496 1495 dbSNP
rs1420896853 1498 dbSNP
rs1065169 1499 dbSNP
rs1065171 1502 dbSNP
rs1428572622 1503 dbSNP
rs3207976 1504 dbSNP
rs1170002611 1505 dbSNP
rs1065172 1507 dbSNP
rs1382995940 1510 dbSNP
rs1303391360 1511 dbSNP
rs1423530089 1511 dbSNP
rs1043841 1512 dbSNP
rs1428424761 1518 dbSNP
rs1288187303 1521 dbSNP
rs1362640218 1522 dbSNP
rs1437354435 1523 dbSNP
rs1313094226 1524 dbSNP
rs17159390 1525 dbSNP
rs1358824857 1528 dbSNP
rs1246915745 1530 dbSNP
rs1292321519 1531 dbSNP
rs1315470794 1539 dbSNP
rs1215580876 1541 dbSNP
rs1243185753 1547 dbSNP
rs1487175595 1549 dbSNP
rs1182286921 1550 dbSNP
rs1240661518 1553 dbSNP
rs1443501688 1560 dbSNP
rs1043856 1561 dbSNP
rs1398719734 1563 dbSNP
rs1158183613 1567 dbSNP
rs1345712744 1568 dbSNP
rs1334627639 1571 dbSNP
rs1382066282 1575 dbSNP
rs1453521297 1577 dbSNP
rs1286152986 1581 dbSNP
rs1371524772 1583 dbSNP
rs1223572196 1584 dbSNP
rs1285305069 1586 dbSNP
rs1202275340 1587 dbSNP
rs1263093035 1591 dbSNP
rs1460462489 1592 dbSNP
rs1183723768 1598 dbSNP
rs1238835793 1599 dbSNP
rs1176271182 1600 dbSNP
rs1408372004 1602 dbSNP
rs1458639184 1603 dbSNP
rs1174132686 1605 dbSNP
rs3206196 1610 dbSNP
rs1065200 1611 dbSNP
rs1336317125 1612 dbSNP
rs1065203 1614 dbSNP
rs1352842930 1614 dbSNP
rs1441667006 1617 dbSNP
rs1043877 1621 dbSNP
rs1280379053 1623 dbSNP
rs1352670287 1628 dbSNP
rs1222105872 1631 dbSNP
rs1283182356 1632 dbSNP
rs1324962983 1643 dbSNP
rs1200532641 1650 dbSNP
rs1280048506 1652 dbSNP
rs1203320437 1659 dbSNP
rs1252132319 1661 dbSNP
rs1473436763 1665 dbSNP
rs1197084228 1667 dbSNP
rs1428511010 1668 dbSNP
rs1480684065 1671 dbSNP
rs1174256975 1672 dbSNP
rs1394359329 1677 dbSNP
rs4098211 1679 dbSNP
rs1372695162 1680 dbSNP
rs1403480949 1683 dbSNP
rs1302999415 1687 dbSNP
rs1346549320 1689 dbSNP
rs1235995012 1700 dbSNP
rs1268956429 1701 dbSNP
rs1336836474 1702 dbSNP
rs1213522650 1706 dbSNP
rs1274892181 1718 dbSNP
rs1219802683 1719 dbSNP
rs1267844566 1722 dbSNP
rs1451986108 1723 dbSNP
rs1371303819 1728 dbSNP
rs1475111605 1741 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucguccucccgacccGUCCgc 5'
                         ||||  
Target 5' --cuacaaaauuccuCAGGga 3'
 		1 - 19
Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_183372 | 3UTR | GAACCACGUAUCUCUGGGUAGCUACAAAAUUCCUCAGGGAUUUCAUUUUGCAGGCAUGUCUCUGAGCUUCUAUACCUGCUCAAGGUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_183372 | 3UTR | UGAACCACGUAUCUCUGGGUAGCUACAAAAUUCCUCAGGGAUUUCAUUUUGCAGGCAUGUCUCUGAGCUUCUAUACCUGCUCAAGGUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_183372 | 3UTR | UUUGAACCACGUAUCUCUGGGUAGCUACAAAAUUCCUCAGGGAUUUCAUUUUGCAGGCAUGUCUCUGAGCUUCUAUACCUGCUCAAGGUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_183372 | 3UTR | UUGAACCACGUAUCUCUGGGUAGCUACAAAAUUCCUCAGGGAUUUCAUUUUGCAGGCAUGUCUCUGAGCUUCUAUACCUGCUCAAGGUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_183372 | 3UTR | AUUUGAACCACGUAUCUCUGGGUAGCUACAAAAUUCCUCAGGGAUUUCAUUUUGCAGGCAUGUCUCUGAGCUUCUAUACCUGCUCAAGGUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_183372 | 3UTR | UUAAUUUGAACCACGUAUCUCUGGGUAGCUACAAAAUUCCUCAGGGAUUUCAUUUUGCAGGCAUGUCUCUGAGCUUCUAUACCUGCUCAAGGUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000369226.3 | 3UTR | CUACAAAAUUCCUCAGGGAUUUCAUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-4763-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT116035 DEPDC1 DEP domain containing 1 2 2
MIRT347197 SIN3B SIN3 transcription regulator family member B 2 2
MIRT443248 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT475164 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT495486 VTI1B vesicle transport through interaction with t-SNAREs 1B 2 2
MIRT496755 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT496863 C21orf2 chromosome 21 open reading frame 2 2 2
MIRT499264 NBPF11 NBPF member 11 2 2
MIRT499517 MAFK MAF bZIP transcription factor K 2 2
MIRT512952 MKI67 marker of proliferation Ki-67 2 2
MIRT514656 NUP93 nucleoporin 93 2 2
MIRT517986 SLC16A13 solute carrier family 16 member 13 2 2
MIRT522816 KLHL9 kelch like family member 9 2 4
MIRT525495 CD63 CD63 molecule 2 2
MIRT528111 FOXH1 forkhead box H1 2 2
MIRT531683 MYO3A myosin IIIA 2 2
MIRT534806 RAB37 RAB37, member RAS oncogene family 2 2
MIRT573041 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT576720 Wars tryptophanyl-tRNA synthetase 2 2
MIRT609727 MLXIPL MLX interacting protein like 2 2
MIRT610843 FAM180B family with sequence similarity 180 member B 2 4
MIRT614735 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT616981 EPOR erythropoietin receptor 2 2
MIRT617265 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT619405 INTS7 integrator complex subunit 7 2 2
MIRT621832 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT621893 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT630263 SMIM14 small integral membrane protein 14 2 2
MIRT634879 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT636863 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637653 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT637699 ZNF439 zinc finger protein 439 2 2
MIRT637759 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT638193 TAOK1 TAO kinase 1 2 2
MIRT638996 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT642221 RABAC1 Rab acceptor 1 2 2
MIRT643327 ATCAY ATCAY, caytaxin 2 4
MIRT643419 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT644499 RNF14 ring finger protein 14 2 2
MIRT644603 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT644795 C21orf59 chromosome 21 open reading frame 59 2 2
MIRT648732 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT653856 SHE Src homology 2 domain containing E 2 2
MIRT654129 RPL14 ribosomal protein L14 2 4
MIRT658876 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT671624 C20orf144 chromosome 20 open reading frame 144 2 4
MIRT677367 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677579 TRIM65 tripartite motif containing 65 2 2
MIRT678220 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT679613 RRP36 ribosomal RNA processing 36 2 2
MIRT686081 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT691817 ICA1L islet cell autoantigen 1 like 2 2
MIRT693869 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT694544 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694926 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT697758 USP37 ubiquitin specific peptidase 37 2 2
MIRT697891 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT701569 MYPN myopalladin 2 2
MIRT703081 GPRIN3 GPRIN family member 3 2 2
MIRT708104 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT708320 NT5C 5', 3'-nucleotidase, cytosolic 2 2
MIRT709878 TRAF1 TNF receptor associated factor 1 2 2
MIRT713545 GJB1 gap junction protein beta 1 2 2
MIRT716275 NUP85 nucleoporin 85 2 2
MIRT716621 CRCP CGRP receptor component 2 2
MIRT717987 C9orf171 cilia and flagella associated protein 77 2 2
MIRT718438 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT722544 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 2 2
MIRT724013 F2RL1 F2R like trypsin receptor 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4763 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Doxorubicin 31703 NSC123127 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Vincristine 5978 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4763 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4763 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4763-5p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-4763-5p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-4763-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4763-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-4763-5p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4763-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4763-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4763-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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