miRTarBase - #MIRT499582


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pre-miRNA Information
pre-miRNA hsa-mir-4742   
Genomic Coordinates chr1: 224398227 - 224398311
Description Homo sapiens miR-4742 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4742-5p
Sequence 1| UCAGGCAAAGGGAUAUUUACAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234293681 4 dbSNP
rs778464201 9 dbSNP
rs758952505 12 dbSNP
rs753463665 16 dbSNP
rs765920862 18 dbSNP
rs1205603801 20 dbSNP
rs756994761 21 dbSNP
Putative Targets

Gene Information
Gene Symbol INTU   
Synonyms INT, PDZD6, PDZK6
Description inturned planar cell polarity protein
Transcript NM_015693   
Expression
Putative miRNA Targets on INTU
3'UTR of INTU
(miRNA target sites are highlighted)		 
>INTU|NM_015693|3'UTR
   1 CTGTGCTTTCTTGATGCGTAGAAACACGTGCATGGAGGATCAAACACTGTCAGAATTGCTGAAATCAATACACAAAGAGA
  81 TAAAGTTTAGCTTCTTTTTACTATTCAATATTGAACATAATATTGTTAAATATTGAGATGAAATGCTGTTGGATTTGATA
 161 CATTAAATCTTAATGTAATATTGTAAGACTTTTGAGAATATACTTGATTAAAATGTGAAAGAAGGGATTGTTAACTTATT
 241 GCTATTTTGGTATATAATGTTAATTTATTGACTAGTTTGAAATAATGTGAAGTGTTTTTTATATCAGATTAATATAGGAA
 321 ATGTTTATTCTTGAAAAATACTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agACAUUUAUAGGGAAACGGAcu 5'
            || :||||| |  ||| :|  
Target 5' ttTGAGAATATAC--TTGATTaa 3'
 191 - 211 97.00 -5.60
2 
miRNA  3' agacauuuAUAGGGAAACGGACu 5'
                  |:| |  || |:|| 
Target 5' -------cTGTGC--TTTCTTGa 3'
 1 - 14 95.00 -7.61
3 
miRNA  3' agACAUUUAUAGGGAAACGGACu 5'
            ||| |: |     ||| ||| 
Target 5' acTGTCAGAA-----TTG-CTGa 3'
 46 - 62 92.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30482377 8 COSMIC
COSN31587327 10 COSMIC
COSN30113225 11 COSMIC
COSN30476642 11 COSMIC
COSN30554936 15 COSMIC
COSN6797091 20 COSMIC
COSN30130902 25 COSMIC
COSN31600913 29 COSMIC
COSN30576184 41 COSMIC
COSN31560817 95 COSMIC
COSN31545029 112 COSMIC
COSN30166680 138 COSMIC
COSN26641869 162 COSMIC
COSN17181746 188 COSMIC
COSN26641327 204 COSMIC
COSN21638949 597 COSMIC
COSN7731446 671 COSMIC
COSN9211986 700 COSMIC
COSN15682016 783 COSMIC
COSN24705661 1020 COSMIC
COSN20210042 1038 COSMIC
COSN9901960 1247 COSMIC
COSN16273451 1276 COSMIC
COSN30445275 1323 COSMIC
COSN19072273 1354 COSMIC
COSN24017983 1738 COSMIC
COSN16204246 1744 COSMIC
COSN29976859 2012 COSMIC
COSN7731447 2042 COSMIC
COSN30290766 2905 COSMIC
COSN9211987 3072 COSMIC
COSN23942220 3253 COSMIC
COSN17805007 3347 COSMIC
COSN24562753 3692 COSMIC
COSN20672927 3796 COSMIC
COSN29928718 4031 COSMIC
COSN24272370 4132 COSMIC
COSN25392262 4438 COSMIC
COSN27127559 4647 COSMIC
COSN23549271 4757 COSMIC
COSN7731448 5444 COSMIC
COSN21214889 5492 COSMIC
COSN16975507 5493 COSMIC
COSN6797092 5534 COSMIC
COSN16934374 5667 COSMIC
COSN19072091 6181 COSMIC
COSN26103732 6184 COSMIC
COSN5008361 6313 COSMIC
COSN16319123 6766 COSMIC
COSN27425610 6969 COSMIC
COSN29447499 7014 COSMIC
COSN6797093 7093 COSMIC
COSN28910226 7125 COSMIC
COSN22977449 7169 COSMIC
COSN22365677 7222 COSMIC
COSN5052260 7360 COSMIC
COSN16001590 7449 COSMIC
COSN20627611 7935 COSMIC
COSN19276995 8534 COSMIC
COSN16965571 8639 COSMIC
COSN5552261 8936 COSMIC
COSN27644368 9552 COSMIC
COSN22610733 9617 COSMIC
COSN15862082 10250 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750856726 2 dbSNP
rs1338654390 4 dbSNP
rs1009088371 6 dbSNP
rs758839059 8 dbSNP
rs1451660258 16 dbSNP
rs780508162 18 dbSNP
rs200544451 19 dbSNP
rs144303370 22 dbSNP
rs777186871 28 dbSNP
rs748807457 29 dbSNP
rs770294668 30 dbSNP
rs35153019 34 dbSNP
rs767203379 44 dbSNP
rs80127004 47 dbSNP
rs571792543 68 dbSNP
rs1429281310 69 dbSNP
rs1224346164 74 dbSNP
rs1245091714 74 dbSNP
rs147808683 91 dbSNP
rs1273001979 96 dbSNP
rs1217145948 101 dbSNP
rs557081770 109 dbSNP
rs1279642234 115 dbSNP
rs1218895407 120 dbSNP
rs1233806483 121 dbSNP
rs1291301411 138 dbSNP
rs1438059557 148 dbSNP
rs1350396091 151 dbSNP
rs1328148742 159 dbSNP
rs992307042 162 dbSNP
rs918106437 171 dbSNP
rs1342599109 175 dbSNP
rs542386850 180 dbSNP
rs1192983925 184 dbSNP
rs543259881 188 dbSNP
rs993348774 190 dbSNP
rs141319802 193 dbSNP
rs1197324071 197 dbSNP
rs1459338425 228 dbSNP
rs1259115828 236 dbSNP
rs1198822320 244 dbSNP
rs1311237830 251 dbSNP
rs577130761 255 dbSNP
rs903481151 259 dbSNP
rs1220424959 268 dbSNP
rs1367758295 274 dbSNP
rs1024135697 292 dbSNP
rs114847993 295 dbSNP
rs1378756522 301 dbSNP
rs1331768910 302 dbSNP
rs979977632 304 dbSNP
rs1008046712 305 dbSNP
rs539567143 322 dbSNP
rs1415060898 328 dbSNP
rs1407390102 329 dbSNP
rs1177242559 334 dbSNP
rs1442099129 339 dbSNP
rs190655524 345 dbSNP
rs573355515 346 dbSNP
rs1253864899 347 dbSNP
rs1449584368 347 dbSNP
rs560502150 347 dbSNP
rs1211830594 350 dbSNP
rs1192611667 353 dbSNP
rs1284696740 353 dbSNP
rs983119793 354 dbSNP
rs907560882 357 dbSNP
rs1395212584 380 dbSNP
rs1376727682 382 dbSNP
rs527708987 385 dbSNP
rs552606512 391 dbSNP
rs796086963 415 dbSNP
rs1040564488 418 dbSNP
rs1156918133 424 dbSNP
rs985224011 429 dbSNP
rs1381440097 430 dbSNP
rs1163566314 434 dbSNP
rs1422386565 445 dbSNP
rs775114671 455 dbSNP
rs1384729049 473 dbSNP
rs1483383397 473 dbSNP
rs1033872712 480 dbSNP
rs932827252 490 dbSNP
rs751602660 505 dbSNP
rs959589828 506 dbSNP
rs1244011985 507 dbSNP
rs1319630958 513 dbSNP
rs1314629156 514 dbSNP
rs1049936481 520 dbSNP
rs1340116791 529 dbSNP
rs542474963 542 dbSNP
rs1389468530 557 dbSNP
rs1401901162 561 dbSNP
rs904803937 568 dbSNP
rs570866394 587 dbSNP
rs918053972 599 dbSNP
rs1456847226 600 dbSNP
rs562256121 603 dbSNP
rs1234277702 606 dbSNP
rs1275167013 607 dbSNP
rs1349745540 611 dbSNP
rs1191089611 628 dbSNP
rs1488960753 629 dbSNP
rs768409261 630 dbSNP
rs1209106451 633 dbSNP
rs576352291 634 dbSNP
rs1206707047 645 dbSNP
rs184033885 648 dbSNP
rs375375646 658 dbSNP
rs1317124031 660 dbSNP
rs1276487857 664 dbSNP
rs1220730575 665 dbSNP
rs925058862 668 dbSNP
rs776345625 683 dbSNP
rs1024399104 693 dbSNP
rs969845665 695 dbSNP
rs979951165 709 dbSNP
rs535778992 713 dbSNP
rs1393471002 724 dbSNP
rs553329740 735 dbSNP
rs1264693069 736 dbSNP
rs943902111 739 dbSNP
rs1199190094 745 dbSNP
rs1423968105 756 dbSNP
rs1197545318 757 dbSNP
rs1040985481 759 dbSNP
rs896983649 766 dbSNP
rs1468989202 767 dbSNP
rs1255926172 775 dbSNP
rs571675785 777 dbSNP
rs1318859381 779 dbSNP
rs1293016953 785 dbSNP
rs1255700728 800 dbSNP
rs575892069 815 dbSNP
rs1332925676 823 dbSNP
rs1302533227 826 dbSNP
rs907530707 827 dbSNP
rs750972881 832 dbSNP
rs1333762369 837 dbSNP
rs975768806 861 dbSNP
rs755092975 862 dbSNP
rs539075734 865 dbSNP
rs1396763534 866 dbSNP
rs1323923118 871 dbSNP
rs557790873 874 dbSNP
rs959376067 877 dbSNP
rs1013752907 882 dbSNP
rs1194138339 885 dbSNP
rs1439029206 889 dbSNP
rs932801011 892 dbSNP
rs1392990997 903 dbSNP
rs576057507 917 dbSNP
rs1328480805 920 dbSNP
rs531224027 922 dbSNP
rs1278116162 931 dbSNP
rs1226405780 945 dbSNP
rs766818906 955 dbSNP
rs936260305 966 dbSNP
rs1347168825 972 dbSNP
rs1329732260 977 dbSNP
rs751859825 987 dbSNP
rs958004636 988 dbSNP
rs1447966016 993 dbSNP
rs1232628350 996 dbSNP
rs1340261518 998 dbSNP
rs1263142638 1000 dbSNP
rs188780868 1006 dbSNP
rs1173688256 1012 dbSNP
rs985215164 1015 dbSNP
rs1210061758 1018 dbSNP
rs1160403713 1022 dbSNP
rs1470354088 1025 dbSNP
rs1236715406 1026 dbSNP
rs781400454 1028 dbSNP
rs4590052 1029 dbSNP
rs1040974068 1031 dbSNP
rs1481879312 1036 dbSNP
rs1215982036 1051 dbSNP
rs1487382824 1053 dbSNP
rs918526235 1057 dbSNP
rs929806317 1058 dbSNP
rs1356039140 1066 dbSNP
rs1048678218 1069 dbSNP
rs541307863 1073 dbSNP
rs756204829 1075 dbSNP
rs1341856935 1077 dbSNP
rs1413195628 1081 dbSNP
rs58752403 1082 dbSNP
rs1398790961 1084 dbSNP
rs888296669 1085 dbSNP
rs1299920540 1090 dbSNP
rs1401242884 1092 dbSNP
rs559701091 1099 dbSNP
rs1475136711 1103 dbSNP
rs1413045504 1116 dbSNP
rs1161210756 1125 dbSNP
rs1473694457 1131 dbSNP
rs527645508 1139 dbSNP
rs1163348178 1140 dbSNP
rs1487310944 1142 dbSNP
rs1370231462 1157 dbSNP
rs905928419 1159 dbSNP
rs1265465895 1162 dbSNP
rs1217067480 1174 dbSNP
rs1001648251 1177 dbSNP
rs1288392621 1181 dbSNP
rs1211995241 1182 dbSNP
rs192562038 1183 dbSNP
rs771880818 1189 dbSNP
rs563935761 1204 dbSNP
rs1004762809 1205 dbSNP
rs746795945 1217 dbSNP
rs1055141171 1233 dbSNP
rs532905219 1234 dbSNP
rs1430879690 1237 dbSNP
rs182637235 1242 dbSNP
rs1220408307 1251 dbSNP
rs543762113 1257 dbSNP
rs768498937 1263 dbSNP
rs965709353 1264 dbSNP
rs1406820319 1274 dbSNP
rs1394948970 1276 dbSNP
rs975736269 1310 dbSNP
rs921629212 1313 dbSNP
rs1476976211 1315 dbSNP
rs1025213375 1322 dbSNP
rs1187149344 1324 dbSNP
rs1477776397 1325 dbSNP
rs967389605 1328 dbSNP
rs1201658273 1333 dbSNP
rs1469158711 1335 dbSNP
rs1257849471 1340 dbSNP
rs1197200639 1341 dbSNP
rs999799931 1347 dbSNP
rs1274764253 1371 dbSNP
rs1214633621 1373 dbSNP
rs1272933495 1397 dbSNP
rs1366307399 1397 dbSNP
rs1371397948 1398 dbSNP
rs1438560808 1398 dbSNP
rs531752575 1399 dbSNP
rs187064454 1400 dbSNP
rs979186882 1409 dbSNP
rs1402719771 1416 dbSNP
rs1171459868 1418 dbSNP
rs776447456 1422 dbSNP
rs761517867 1428 dbSNP
rs1423197584 1435 dbSNP
rs568343030 1439 dbSNP
rs1053340701 1440 dbSNP
rs913488008 1441 dbSNP
rs1322987378 1448 dbSNP
rs1244810909 1466 dbSNP
rs191706173 1469 dbSNP
rs879788182 1471 dbSNP
rs1459418022 1479 dbSNP
rs1250276203 1486 dbSNP
rs529464095 1488 dbSNP
rs1206875300 1489 dbSNP
rs1311060133 1489 dbSNP
rs1045749471 1494 dbSNP
rs1485571018 1495 dbSNP
rs1348461644 1496 dbSNP
rs547647543 1507 dbSNP
rs1308527814 1511 dbSNP
rs1444287227 1512 dbSNP
rs905895819 1520 dbSNP
rs1001615797 1522 dbSNP
rs1298925651 1527 dbSNP
rs1447609412 1533 dbSNP
rs911007564 1534 dbSNP
rs1049175745 1535 dbSNP
rs1180618421 1536 dbSNP
rs1258949416 1538 dbSNP
rs769388700 1539 dbSNP
rs1169746923 1541 dbSNP
rs566039436 1543 dbSNP
rs1005134053 1545 dbSNP
rs1388424042 1546 dbSNP
rs772576708 1546 dbSNP
rs966339832 1568 dbSNP
rs1409212148 1570 dbSNP
rs1431838070 1575 dbSNP
rs1482710650 1584 dbSNP
rs1235421846 1592 dbSNP
rs918275478 1601 dbSNP
rs1485744616 1603 dbSNP
rs1285141981 1609 dbSNP
rs929851775 1617 dbSNP
rs539371498 1624 dbSNP
rs763576195 1625 dbSNP
rs997419715 1627 dbSNP
rs1227575196 1644 dbSNP
rs1468059368 1645 dbSNP
rs766795878 1650 dbSNP
rs1315080209 1653 dbSNP
rs1415416986 1656 dbSNP
rs1359985568 1659 dbSNP
rs557510981 1662 dbSNP
rs569718428 1668 dbSNP
rs1422083871 1669 dbSNP
rs1346358287 1670 dbSNP
rs1381176717 1682 dbSNP
rs536776080 1691 dbSNP
rs184305513 1692 dbSNP
rs1055129869 1693 dbSNP
rs1230117016 1713 dbSNP
rs759903570 1729 dbSNP
rs573849323 1731 dbSNP
rs1486790550 1737 dbSNP
rs1347592357 1739 dbSNP
rs541239501 1740 dbSNP
rs553259212 1743 dbSNP
rs1319720307 1746 dbSNP
rs1295280562 1753 dbSNP
rs925032588 1764 dbSNP
rs957532891 1766 dbSNP
rs1186495389 1767 dbSNP
rs1246232088 1768 dbSNP
rs989403095 1772 dbSNP
rs1451481581 1773 dbSNP
rs767815605 1778 dbSNP
rs752944479 1780 dbSNP
rs1394647501 1784 dbSNP
rs913429508 1792 dbSNP
rs577907428 1794 dbSNP
rs981728241 1801 dbSNP
rs546167557 1802 dbSNP
rs1032634655 1807 dbSNP
rs927238591 1813 dbSNP
rs778134253 1828 dbSNP
rs1319850468 1829 dbSNP
rs1385798195 1830 dbSNP
rs1436716027 1838 dbSNP
rs756255680 1838 dbSNP
rs1297711091 1840 dbSNP
rs1369704064 1841 dbSNP
rs1422532858 1849 dbSNP
rs1217147476 1850 dbSNP
rs564355607 1852 dbSNP
rs1429839796 1855 dbSNP
rs1262274753 1859 dbSNP
rs1049113741 1860 dbSNP
rs1007091854 1861 dbSNP
rs189047367 1864 dbSNP
rs965099445 1865 dbSNP
rs887875909 1867 dbSNP
rs1229683890 1868 dbSNP
rs940807913 1869 dbSNP
rs1301101957 1870 dbSNP
rs1036594176 1877 dbSNP
rs951084792 1879 dbSNP
rs901713171 1897 dbSNP
rs997388482 1905 dbSNP
rs1028871375 1908 dbSNP
rs888749892 1911 dbSNP
rs879088105 1916 dbSNP
rs1246876662 1924 dbSNP
rs909835766 1926 dbSNP
rs1209366857 1929 dbSNP
rs556190506 1930 dbSNP
rs1000500490 1932 dbSNP
rs879253182 1933 dbSNP
rs192999498 1938 dbSNP
rs1463014835 1940 dbSNP
rs561862670 1947 dbSNP
rs749627919 1948 dbSNP
rs956645819 1956 dbSNP
rs987941987 1958 dbSNP
rs1193189674 1961 dbSNP
rs1020868140 1962 dbSNP
rs529406440 1966 dbSNP
rs754158082 1971 dbSNP
rs1158313930 1972 dbSNP
rs1409588134 1973 dbSNP
rs1254858907 1978 dbSNP
rs1458753705 1991 dbSNP
rs1320592977 1998 dbSNP
rs1348816847 2017 dbSNP
rs1433817271 2025 dbSNP
rs1236519708 2032 dbSNP
rs1197778645 2034 dbSNP
rs1294993520 2034 dbSNP
rs35144475 2034 dbSNP
rs1368735821 2041 dbSNP
rs1228107606 2056 dbSNP
rs868356988 2058 dbSNP
rs1286856231 2065 dbSNP
rs1231215207 2078 dbSNP
rs777956567 2079 dbSNP
rs12639763 2080 dbSNP
rs1446435524 2082 dbSNP
rs1375153309 2092 dbSNP
rs1326400185 2093 dbSNP
rs758428056 2094 dbSNP
rs1392797000 2096 dbSNP
rs1396829527 2099 dbSNP
rs985175237 2100 dbSNP
rs1301717179 2119 dbSNP
rs374836362 2119 dbSNP
rs562552525 2119 dbSNP
rs1396796363 2124 dbSNP
rs1174199114 2127 dbSNP
rs1438775809 2135 dbSNP
rs1449975009 2136 dbSNP
rs1046483854 2137 dbSNP
rs1224037198 2141 dbSNP
rs867707451 2143 dbSNP
rs1438581964 2155 dbSNP
rs1247566360 2159 dbSNP
rs773905455 2161 dbSNP
rs1480436010 2175 dbSNP
rs902508953 2190 dbSNP
rs940765903 2190 dbSNP
rs1181103591 2206 dbSNP
rs1036488862 2207 dbSNP
rs145064518 2209 dbSNP
rs533491653 2213 dbSNP
rs746894186 2215 dbSNP
rs1351903994 2219 dbSNP
rs1281616207 2222 dbSNP
rs933163737 2224 dbSNP
rs551335732 2230 dbSNP
rs375768458 2231 dbSNP
rs1412317077 2233 dbSNP
rs1403158417 2238 dbSNP
rs889050642 2246 dbSNP
rs1000814281 2265 dbSNP
rs1313365759 2267 dbSNP
rs894085734 2269 dbSNP
rs1382756597 2272 dbSNP
rs1408877258 2274 dbSNP
rs1007165329 2277 dbSNP
rs1306511680 2280 dbSNP
rs1032415712 2296 dbSNP
rs1470424362 2303 dbSNP
rs1352772817 2313 dbSNP
rs537066002 2318 dbSNP
rs892170467 2322 dbSNP
rs1009690234 2327 dbSNP
rs1284192867 2333 dbSNP
rs1354316863 2343 dbSNP
rs1230041197 2352 dbSNP
rs1487577052 2361 dbSNP
rs149116573 2362 dbSNP
rs867239372 2367 dbSNP
rs901346661 2370 dbSNP
rs971525502 2374 dbSNP
rs981623458 2382 dbSNP
rs1356107404 2384 dbSNP
rs781104901 2392 dbSNP
rs1231103238 2393 dbSNP
rs998306515 2404 dbSNP
rs1293342143 2412 dbSNP
rs775550992 2415 dbSNP
rs958928758 2420 dbSNP
rs1203306263 2421 dbSNP
rs1324606993 2431 dbSNP
rs1320226951 2438 dbSNP
rs1401011704 2449 dbSNP
rs1249321114 2451 dbSNP
rs567375358 2458 dbSNP
rs951113478 2464 dbSNP
rs1162995064 2472 dbSNP
rs985095951 2473 dbSNP
rs1182796704 2474 dbSNP
rs1016789865 2475 dbSNP
rs909205042 2478 dbSNP
rs534810537 2484 dbSNP
rs769319957 2485 dbSNP
rs1244278402 2494 dbSNP
rs962073275 2501 dbSNP
rs553246740 2521 dbSNP
rs1451350150 2522 dbSNP
rs958593634 2524 dbSNP
rs923371857 2526 dbSNP
rs1215992820 2528 dbSNP
rs577851107 2534 dbSNP
rs991378202 2539 dbSNP
rs1217428142 2542 dbSNP
rs1336889772 2543 dbSNP
rs1271820121 2552 dbSNP
rs1050199972 2553 dbSNP
rs1330500680 2555 dbSNP
rs772849513 2555 dbSNP
rs548812971 2562 dbSNP
rs1323610431 2572 dbSNP
rs1442917863 2579 dbSNP
rs1395474911 2583 dbSNP
rs936582641 2584 dbSNP
rs1170250854 2585 dbSNP
rs1053711472 2592 dbSNP
rs1166376953 2592 dbSNP
rs748755718 2595 dbSNP
rs982597407 2596 dbSNP
rs1477973831 2601 dbSNP
rs1372788498 2624 dbSNP
rs1009246715 2634 dbSNP
rs1251722895 2637 dbSNP
rs1195884215 2640 dbSNP
rs201804427 2644 dbSNP
rs1469202505 2646 dbSNP
rs1046154285 2654 dbSNP
rs1203421664 2655 dbSNP
rs1430860452 2659 dbSNP
rs763956126 2661 dbSNP
rs545001217 2662 dbSNP
rs143629825 2663 dbSNP
rs1034511219 2674 dbSNP
rs1236146236 2675 dbSNP
rs770421780 2683 dbSNP
rs915256682 2684 dbSNP
rs1440314787 2696 dbSNP
rs942893217 2699 dbSNP
rs1039978864 2702 dbSNP
rs1006847415 2716 dbSNP
rs774857835 2725 dbSNP
rs1176087076 2728 dbSNP
rs962326654 2738 dbSNP
rs576323613 2739 dbSNP
rs759991695 2744 dbSNP
rs901341564 2749 dbSNP
rs1479436829 2767 dbSNP
rs1234321471 2769 dbSNP
rs1204592420 2775 dbSNP
rs185511922 2780 dbSNP
rs767905918 2794 dbSNP
rs190442004 2810 dbSNP
rs573842566 2812 dbSNP
rs1348265896 2817 dbSNP
rs1196094904 2830 dbSNP
rs138210620 2837 dbSNP
rs1221896064 2839 dbSNP
rs1280415649 2842 dbSNP
rs761547823 2846 dbSNP
rs766594308 2863 dbSNP
rs1005732664 2867 dbSNP
rs1016528060 2871 dbSNP
rs1435860296 2875 dbSNP
rs1360494566 2878 dbSNP
rs1157369821 2879 dbSNP
rs1440582811 2883 dbSNP
rs531516345 2885 dbSNP
rs761013877 2886 dbSNP
rs751829922 2887 dbSNP
rs936523925 2895 dbSNP
rs1054082462 2899 dbSNP
rs1189500830 2904 dbSNP
rs1485938394 2905 dbSNP
rs764216484 2907 dbSNP
rs1318510929 2909 dbSNP
rs1285172089 2910 dbSNP
rs913835465 2914 dbSNP
rs1232925622 2918 dbSNP
rs1353857968 2939 dbSNP
rs1295170475 2947 dbSNP
rs1448417140 2956 dbSNP
rs1287646054 2975 dbSNP
rs945308314 2976 dbSNP
rs1186261677 2978 dbSNP
rs1046081802 3005 dbSNP
rs370092138 3008 dbSNP
rs906231000 3015 dbSNP
rs1001952879 3025 dbSNP
rs10016934 3027 dbSNP
rs10016772 3042 dbSNP
rs1189437048 3044 dbSNP
rs977304287 3046 dbSNP
rs1260882333 3053 dbSNP
rs1006404610 3054 dbSNP
rs1486698259 3061 dbSNP
rs150489594 3063 dbSNP
rs149470154 3072 dbSNP
rs1212880957 3075 dbSNP
rs962303755 3081 dbSNP
rs570780512 3084 dbSNP
rs993740713 3086 dbSNP
rs1387980559 3092 dbSNP
rs1233915672 3102 dbSNP
rs1275350439 3102 dbSNP
rs1306995551 3104 dbSNP
rs956783516 3109 dbSNP
rs1384442804 3110 dbSNP
rs1363330777 3111 dbSNP
rs989977645 3117 dbSNP
rs915204185 3118 dbSNP
rs564022116 3120 dbSNP
rs1030286506 3121 dbSNP
rs954712071 3125 dbSNP
rs878979402 3128 dbSNP
rs1372026414 3130 dbSNP
rs1232840139 3139 dbSNP
rs986143645 3148 dbSNP
rs767651752 3157 dbSNP
rs922879068 3159 dbSNP
rs1342665180 3164 dbSNP
rs1255049525 3171 dbSNP
rs1214584793 3172 dbSNP
rs934136169 3174 dbSNP
rs1047205348 3181 dbSNP
rs34154666 3181 dbSNP
rs878863756 3181 dbSNP
rs879247062 3192 dbSNP
rs765368170 3193 dbSNP
rs530381362 3199 dbSNP
rs1005267370 3204 dbSNP
rs1263736788 3207 dbSNP
rs1464393650 3208 dbSNP
rs549048165 3223 dbSNP
rs1206203162 3226 dbSNP
rs1232472530 3226 dbSNP
rs989308787 3230 dbSNP
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rs555777059 6811 dbSNP
rs574175013 6812 dbSNP
rs1203769055 6813 dbSNP
rs1469249407 6823 dbSNP
rs142718044 6832 dbSNP
rs180852027 6849 dbSNP
rs368527064 6853 dbSNP
rs1452907695 6861 dbSNP
rs1311796897 6864 dbSNP
rs72681830 6867 dbSNP
rs901145463 6868 dbSNP
rs1337410617 6873 dbSNP
rs972298251 6888 dbSNP
rs997270444 6895 dbSNP
rs1454809661 6900 dbSNP
rs1049773728 6901 dbSNP
rs1384213690 6902 dbSNP
rs1368247659 6903 dbSNP
rs538460066 6926 dbSNP
rs1312074323 6931 dbSNP
rs1222276889 6932 dbSNP
rs185302311 6933 dbSNP
rs1324445797 6934 dbSNP
rs926386740 6945 dbSNP
rs1031507407 6947 dbSNP
rs531547758 6948 dbSNP
rs1259114941 6949 dbSNP
rs1264626304 6950 dbSNP
rs1287269150 6950 dbSNP
rs1316033725 6950 dbSNP
rs1320415538 6950 dbSNP
rs1324740832 6950 dbSNP
rs34743437 6950 dbSNP
rs1486989899 6951 dbSNP
rs1390660182 6958 dbSNP
rs1301605995 6961 dbSNP
rs1426981602 6966 dbSNP
rs75603632 6967 dbSNP
rs1405262469 6970 dbSNP
rs1262223321 6971 dbSNP
rs1480049460 6972 dbSNP
rs1197267261 6974 dbSNP
rs1430767452 6976 dbSNP
rs1469818173 6977 dbSNP
rs1370841281 6978 dbSNP
rs1157744175 6979 dbSNP
rs1056506169 6980 dbSNP
rs1343036102 6981 dbSNP
rs1455047891 6986 dbSNP
rs550978539 6990 dbSNP
rs1345321064 6997 dbSNP
rs760583882 6998 dbSNP
rs1285817199 6999 dbSNP
rs764086028 7000 dbSNP
rs945236126 7005 dbSNP
rs1227908226 7014 dbSNP
rs1337760259 7031 dbSNP
rs1346701117 7038 dbSNP
rs189639586 7039 dbSNP
rs371534606 7041 dbSNP
rs1227816901 7042 dbSNP
rs1281951485 7049 dbSNP
rs113878641 7057 dbSNP
rs1304986425 7061 dbSNP
rs759688730 7076 dbSNP
rs1407348419 7081 dbSNP
rs1042367814 7101 dbSNP
rs903681891 7103 dbSNP
rs1409001301 7104 dbSNP
rs181702489 7108 dbSNP
rs1054525723 7111 dbSNP
rs969729913 7116 dbSNP
rs980159232 7123 dbSNP
rs1261086268 7125 dbSNP
rs748294263 7127 dbSNP
rs920304433 7143 dbSNP
rs186667913 7147 dbSNP
rs1019331237 7154 dbSNP
rs578229888 7158 dbSNP
rs993701574 7158 dbSNP
rs761608335 7163 dbSNP
rs908680604 7164 dbSNP
rs1219996854 7165 dbSNP
rs1026550861 7167 dbSNP
rs1278713706 7167 dbSNP
rs1346763477 7167 dbSNP
rs952193468 7167 dbSNP
rs534401989 7169 dbSNP
rs1440478570 7171 dbSNP
rs940203816 7179 dbSNP
rs200903990 7181 dbSNP
rs1176080115 7186 dbSNP
rs991924390 7197 dbSNP
rs370677680 7199 dbSNP
rs1420471427 7211 dbSNP
rs917570525 7216 dbSNP
rs945059624 7216 dbSNP
rs922826620 7222 dbSNP
rs1365327500 7224 dbSNP
rs1176372027 7226 dbSNP
rs1423056268 7226 dbSNP
rs932945874 7229 dbSNP
rs1182758591 7230 dbSNP
rs1305370498 7230 dbSNP
rs1050182842 7234 dbSNP
rs1366680470 7236 dbSNP
rs1261319291 7238 dbSNP
rs904563282 7245 dbSNP
rs925214611 7252 dbSNP
rs767739969 7253 dbSNP
rs552537238 7256 dbSNP
rs1375699419 7260 dbSNP
rs192022701 7272 dbSNP
rs889636898 7297 dbSNP
rs538179313 7298 dbSNP
rs1314557622 7308 dbSNP
rs1035387329 7309 dbSNP
rs1454144775 7310 dbSNP
rs1406665683 7318 dbSNP
rs1158259903 7320 dbSNP
rs1357564227 7333 dbSNP
rs1243450274 7335 dbSNP
rs943410952 7337 dbSNP
rs1293705551 7343 dbSNP
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rs1490487839 7348 dbSNP
rs556462713 7352 dbSNP
rs1040503207 7362 dbSNP
rs1185457644 7372 dbSNP
rs1481362532 7377 dbSNP
rs891606755 7383 dbSNP
rs567686665 7391 dbSNP
rs1024167324 7392 dbSNP
rs905764097 7393 dbSNP
rs1165836886 7399 dbSNP
rs888001231 7403 dbSNP
rs1245705029 7407 dbSNP
rs1006436434 7409 dbSNP
rs1001494992 7426 dbSNP
rs147373619 7431 dbSNP
rs1287847889 7435 dbSNP
rs1428533012 7451 dbSNP
rs1346907108 7462 dbSNP
rs553782243 7465 dbSNP
rs572089222 7466 dbSNP
rs1356800003 7467 dbSNP
rs1024756007 7480 dbSNP
rs966349183 7488 dbSNP
rs1184916833 7491 dbSNP
rs1487104477 7514 dbSNP
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rs545967107 7531 dbSNP
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rs1224241504 7537 dbSNP
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rs1454830413 7538 dbSNP
rs1014642729 7548 dbSNP
rs1278794470 7588 dbSNP
rs181905859 7602 dbSNP
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rs1363449753 7610 dbSNP
rs1304800934 7615 dbSNP
rs936541238 7619 dbSNP
rs540479129 7624 dbSNP
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rs1430403211 7654 dbSNP
rs1213908627 7655 dbSNP
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rs925909973 7674 dbSNP
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rs943913197 7685 dbSNP
rs1204547663 7689 dbSNP
rs1242042014 7690 dbSNP
rs1459675520 7694 dbSNP
rs72918237 7701 dbSNP
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rs1006881823 7738 dbSNP
rs1468643506 7752 dbSNP
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rs1337708447 7775 dbSNP
rs1248926716 7782 dbSNP
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rs754381245 7867 dbSNP
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rs60280700 8000 dbSNP
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rs1290815932 8026 dbSNP
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rs988800187 8036 dbSNP
rs1284799396 8037 dbSNP
rs1470964829 8043 dbSNP
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rs1298404340 8060 dbSNP
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rs1177254633 8078 dbSNP
rs781730740 8081 dbSNP
rs950177445 8087 dbSNP
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rs182337231 8154 dbSNP
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rs1282490472 8188 dbSNP
rs1195257427 8197 dbSNP
rs1337492609 8200 dbSNP
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rs1253210275 8215 dbSNP
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rs1224767879 8221 dbSNP
rs1345445002 8221 dbSNP
rs1371585284 8224 dbSNP
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rs1349479394 8234 dbSNP
rs901521071 8237 dbSNP
rs1203054664 8241 dbSNP
rs545577692 8266 dbSNP
rs956010937 8272 dbSNP
rs1028755761 8278 dbSNP
rs1409052050 8288 dbSNP
rs115767147 8291 dbSNP
rs1222235938 8295 dbSNP
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rs557854284 8306 dbSNP
rs1007043357 8307 dbSNP
rs1173945087 8312 dbSNP
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rs1181353525 8325 dbSNP
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rs1033209660 8371 dbSNP
rs1199642504 8372 dbSNP
rs1199351172 8374 dbSNP
rs1323402000 8383 dbSNP
rs576269820 8384 dbSNP
rs1468793196 8387 dbSNP
rs1006533366 8389 dbSNP
rs1441012200 8390 dbSNP
rs370590384 8395 dbSNP
rs1333635826 8400 dbSNP
rs1018368019 8401 dbSNP
rs542338596 8405 dbSNP
rs913199852 8415 dbSNP
rs750818515 8419 dbSNP
rs758079224 8420 dbSNP
rs918417200 8420 dbSNP
rs983486596 8428 dbSNP
rs187056823 8430 dbSNP
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rs1348317549 8439 dbSNP
rs1382432086 8444 dbSNP
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rs1460908578 8458 dbSNP
rs1241402386 8480 dbSNP
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rs1283931549 8485 dbSNP
rs555697796 8488 dbSNP
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rs1351005670 8508 dbSNP
rs1311032962 8512 dbSNP
rs1240488038 8528 dbSNP
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rs72681831 8542 dbSNP
rs940571889 8544 dbSNP
rs1450055072 8546 dbSNP
rs1036246817 8562 dbSNP
rs1290101307 8563 dbSNP
rs1490974561 8564 dbSNP
rs949624513 8566 dbSNP
rs901478095 8571 dbSNP
rs1211029145 8576 dbSNP
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rs1362274117 8581 dbSNP
rs997211139 8584 dbSNP
rs1159440269 8585 dbSNP
rs1436089287 8588 dbSNP
rs1184080241 8593 dbSNP
rs1046722349 8597 dbSNP
rs1381105720 8599 dbSNP
rs1444258072 8604 dbSNP
rs902676651 8633 dbSNP
rs1383448657 8635 dbSNP
rs999725616 8642 dbSNP
rs11941076 8644 dbSNP
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rs1287242439 8660 dbSNP
rs1216864989 8668 dbSNP
rs1001059352 8671 dbSNP
rs1309874673 8677 dbSNP
rs1426474185 8681 dbSNP
rs1229565039 8688 dbSNP
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rs150413383 8694 dbSNP
rs1166952933 8697 dbSNP
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rs1479128314 8697 dbSNP
rs375764272 8697 dbSNP
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rs1199150936 8698 dbSNP
rs1490071802 8701 dbSNP
rs1007057223 8703 dbSNP
rs1223378352 8704 dbSNP
rs1395705419 8713 dbSNP
rs1389112529 8727 dbSNP
rs1330346893 8728 dbSNP
rs866539030 8729 dbSNP
rs1451509876 8733 dbSNP
rs1017900302 8734 dbSNP
rs1404142953 8735 dbSNP
rs933370727 8737 dbSNP
rs199817533 8738 dbSNP
rs139409856 8739 dbSNP
rs370797192 8739 dbSNP
rs1295487578 8746 dbSNP
rs1437513034 8751 dbSNP
rs1354011480 8753 dbSNP
rs893312626 8760 dbSNP
rs1467580033 8761 dbSNP
rs965457047 8762 dbSNP
rs998049330 8779 dbSNP
rs1269964568 8791 dbSNP
rs1479648330 8791 dbSNP
rs1245999209 8792 dbSNP
rs1488635623 8794 dbSNP
rs1231762343 8795 dbSNP
rs1196215197 8797 dbSNP
rs1025544660 8809 dbSNP
rs1258657219 8820 dbSNP
rs1251179262 8824 dbSNP
rs1010462651 8826 dbSNP
rs868637214 8827 dbSNP
rs983897329 8851 dbSNP
rs1197579568 8852 dbSNP
rs535675032 8859 dbSNP
rs1401180417 8860 dbSNP
rs1461016310 8862 dbSNP
rs1336612256 8863 dbSNP
rs1465042926 8889 dbSNP
rs1016737865 8891 dbSNP
rs1177261841 8892 dbSNP
rs1433344476 8893 dbSNP
rs963461389 8896 dbSNP
rs1176181691 8901 dbSNP
rs972078173 8906 dbSNP
rs1238302862 8910 dbSNP
rs527710501 8925 dbSNP
rs1482270912 8928 dbSNP
rs1425280268 8931 dbSNP
rs1257468003 8933 dbSNP
rs1217434125 8934 dbSNP
rs1210592672 8953 dbSNP
rs991317091 8964 dbSNP
rs1372392760 8969 dbSNP
rs1307317742 8970 dbSNP
rs1242635747 8973 dbSNP
rs1377735705 8974 dbSNP
rs1314529123 8977 dbSNP
rs1460427421 8977 dbSNP
rs1394741508 8978 dbSNP
rs1172151467 8979 dbSNP
rs981450392 8982 dbSNP
rs1400473856 8989 dbSNP
rs916585169 8992 dbSNP
rs1034797919 8996 dbSNP
rs958814663 8998 dbSNP
rs545945494 9004 dbSNP
rs564615804 9011 dbSNP
rs1182463737 9014 dbSNP
rs909014914 9015 dbSNP
rs935581402 9016 dbSNP
rs1053921559 9018 dbSNP
rs940542605 9020 dbSNP
rs942462406 9032 dbSNP
rs1039892477 9033 dbSNP
rs1291045832 9046 dbSNP
rs900822196 9050 dbSNP
rs997829922 9051 dbSNP
rs1396933419 9054 dbSNP
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rs1338900645 9056 dbSNP
rs1421084126 9065 dbSNP
rs1360776099 9075 dbSNP
rs1025283406 9084 dbSNP
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rs1005433520 9097 dbSNP
rs1369735391 9100 dbSNP
rs768103494 9100 dbSNP
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rs1477487019 9114 dbSNP
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rs879816441 9126 dbSNP
rs971931839 9132 dbSNP
rs923195643 9141 dbSNP
rs933264505 9159 dbSNP
rs1230313886 9167 dbSNP
rs112546913 9173 dbSNP
rs1358524843 9175 dbSNP
rs1266185551 9178 dbSNP
rs769650184 9178 dbSNP
rs1258791949 9181 dbSNP
rs1316614885 9183 dbSNP
rs1280421691 9201 dbSNP
rs1401011083 9209 dbSNP
rs1322996440 9215 dbSNP
rs1201868142 9216 dbSNP
rs1050089889 9217 dbSNP
rs1483721192 9218 dbSNP
rs776653722 9221 dbSNP
rs1024169359 9222 dbSNP
rs1163344406 9226 dbSNP
rs550006683 9230 dbSNP
rs970701670 9234 dbSNP
rs1421426795 9236 dbSNP
rs568401857 9251 dbSNP
rs1478013647 9255 dbSNP
rs893284476 9271 dbSNP
rs1197022079 9280 dbSNP
rs545227633 9285 dbSNP
rs1453601975 9290 dbSNP
rs146765765 9291 dbSNP
rs1260525160 9301 dbSNP
rs989769428 9304 dbSNP
rs1323265528 9309 dbSNP
rs915404299 9316 dbSNP
rs942890927 9324 dbSNP
rs1020899140 9325 dbSNP
rs1332467806 9330 dbSNP
rs1039436104 9332 dbSNP
rs1445431888 9339 dbSNP
rs907443809 9339 dbSNP
rs1397562651 9340 dbSNP
rs900896160 9347 dbSNP
rs1466138329 9360 dbSNP
rs933756900 9365 dbSNP
rs1003575993 9367 dbSNP
rs1170611458 9373 dbSNP
rs1046679041 9375 dbSNP
rs1479093577 9380 dbSNP
rs1034314654 9391 dbSNP
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rs984812029 9416 dbSNP
rs761699994 9423 dbSNP
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rs1240173953 9428 dbSNP
rs1199802924 9429 dbSNP
rs1442361451 9431 dbSNP
rs762703254 9434 dbSNP
rs1202584020 9435 dbSNP
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rs1346622307 9444 dbSNP
rs565511526 9451 dbSNP
rs1275053437 9467 dbSNP
rs971859513 9470 dbSNP
rs765066018 9473 dbSNP
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rs1310891051 9488 dbSNP
rs539434440 9490 dbSNP
rs1447354498 9505 dbSNP
rs1358513944 9506 dbSNP
rs933251847 9515 dbSNP
rs986457229 9516 dbSNP
rs762660141 9539 dbSNP
rs1158265281 9542 dbSNP
rs1438126970 9545 dbSNP
rs894297625 9548 dbSNP
rs80321875 9550 dbSNP
rs1472733833 9552 dbSNP
rs564926788 9553 dbSNP
rs1236255100 9556 dbSNP
rs1024153850 9557 dbSNP
rs751112802 9566 dbSNP
rs1215427978 9581 dbSNP
rs569814933 9589 dbSNP
rs1031004208 9591 dbSNP
rs754535629 9592 dbSNP
rs945139434 9593 dbSNP
rs956725751 9595 dbSNP
rs1282322766 9596 dbSNP
rs1450203492 9600 dbSNP
rs1041887277 9604 dbSNP
rs1221725581 9608 dbSNP
rs1285303446 9620 dbSNP
rs1362722606 9625 dbSNP
rs907367027 9626 dbSNP
rs1003091542 9631 dbSNP
rs111904817 9636 dbSNP
rs915501288 9644 dbSNP
rs1215415926 9652 dbSNP
rs1165505021 9658 dbSNP
rs1473445949 9662 dbSNP
rs537235983 9663 dbSNP
rs1191962580 9666 dbSNP
rs1484735294 9666 dbSNP
rs766893232 9669 dbSNP
rs1263761580 9680 dbSNP
rs1006160021 9686 dbSNP
rs555636629 9689 dbSNP
rs1016248138 9713 dbSNP
rs573963063 9714 dbSNP
rs1287196586 9720 dbSNP
rs753292364 9722 dbSNP
rs1335395268 9731 dbSNP
rs534588116 9736 dbSNP
rs1196618615 9738 dbSNP
rs553251353 9748 dbSNP
rs1342197010 9757 dbSNP
rs1289636843 9769 dbSNP
rs1436114117 9777 dbSNP
rs1030127478 9789 dbSNP
rs1167020065 9794 dbSNP
rs1406395406 9801 dbSNP
rs954710929 9815 dbSNP
rs922803604 9817 dbSNP
rs1478997088 9818 dbSNP
rs986039499 9834 dbSNP
rs1157997731 9845 dbSNP
rs1186725323 9850 dbSNP
rs1046836475 9863 dbSNP
rs1361720656 9872 dbSNP
rs1223167617 9882 dbSNP
rs1421834180 9884 dbSNP
rs910441005 9893 dbSNP
rs1216764935 9897 dbSNP
rs572311863 9901 dbSNP
rs1296099994 9905 dbSNP
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rs1365764899 9918 dbSNP
rs989137042 9919 dbSNP
rs1295325811 9921 dbSNP
rs1441767599 9926 dbSNP
rs7678085 9928 dbSNP
rs564166608 9929 dbSNP
rs1295333276 9935 dbSNP
rs1046578431 9949 dbSNP
rs1175801488 9952 dbSNP
rs1045932932 9960 dbSNP
rs1422646754 9967 dbSNP
rs1454308361 9974 dbSNP
rs1237105131 9984 dbSNP
rs1196661037 9991 dbSNP
rs1459045799 9993 dbSNP
rs1209204705 9995 dbSNP
rs1310616693 10002 dbSNP
rs1303654482 10010 dbSNP
rs547671392 10011 dbSNP
rs1305051623 10012 dbSNP
rs938868366 10013 dbSNP
rs1376230080 10016 dbSNP
rs1055992275 10025 dbSNP
rs749669564 10026 dbSNP
rs757498964 10027 dbSNP
rs1318982831 10030 dbSNP
rs894717841 10040 dbSNP
rs1302579809 10044 dbSNP
rs1006462870 10047 dbSNP
rs1361302292 10048 dbSNP
rs1175122838 10064 dbSNP
rs1037666100 10067 dbSNP
rs868054768 10071 dbSNP
rs1011299935 10073 dbSNP
rs1176246796 10073 dbSNP
rs143934706 10073 dbSNP
rs1490156899 10076 dbSNP
rs1220250039 10084 dbSNP
rs543148230 10086 dbSNP
rs1251193360 10099 dbSNP
rs141196866 10102 dbSNP
rs1176130789 10103 dbSNP
rs748103364 10105 dbSNP
rs975693965 10110 dbSNP
rs56001835 10143 dbSNP
rs955574166 10145 dbSNP
rs954839591 10154 dbSNP
rs769728041 10166 dbSNP
rs908326678 10170 dbSNP
rs1385051019 10174 dbSNP
rs1423274718 10177 dbSNP
rs1377173500 10182 dbSNP
rs561971797 10186 dbSNP
rs1312604592 10194 dbSNP
rs1038407414 10209 dbSNP
rs1381792034 10213 dbSNP
rs915580709 10219 dbSNP
rs1350976986 10227 dbSNP
rs1017481429 10234 dbSNP
rs1156260290 10248 dbSNP
rs957935852 10249 dbSNP
rs1045681433 10254 dbSNP
rs907021049 10257 dbSNP
rs989398556 10262 dbSNP
rs1379367604 10263 dbSNP
rs1163967779 10271 dbSNP
rs1421996671 10277 dbSNP
rs934503041 10278 dbSNP
rs1188423051 10285 dbSNP
rs1488064903 10291 dbSNP
rs1052958350 10298 dbSNP
rs1309708131 10300 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agacAUUUAUAGGG-AAACGGACu 5'
              |:|| :||||   | |:|| 
Target 5' ----UGAA-GUCCCAGCUACUUGg 3'
 		1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions