pre-miRNA Information
pre-miRNA hsa-mir-4781   
Genomic Coordinates chr1: 54054079 - 54054154
Description Homo sapiens miR-4781 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4781-3p
Sequence 46| AAUGUUGGAAUCCUCGCUAGAG |67
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs968609764 2 dbSNP
rs899910686 3 dbSNP
rs74085143 4 dbSNP
rs550946107 8 dbSNP
rs747064911 10 dbSNP
rs1352517651 13 dbSNP
rs1436072914 22 dbSNP
Putative Targets

Gene Information
Gene Symbol NFATC2IP   
Synonyms ESC2, NIP45, RAD60
Description nuclear factor of activated T-cells 2 interacting protein
Transcript NM_032815   
Expression
Putative miRNA Targets on NFATC2IP
3'UTR of NFATC2IP
(miRNA target sites are highlighted)
>NFATC2IP|NM_032815|3'UTR
   1 CACCCCACTCCCTGTTTGACGGCCCAGCCTGGACTTGGGGAGAATGACTTTCCCTTTTTTGCCCCATAAGGGCTAGCATA
  81 AGCTGAGGTAGAACTTATCTTTAAGCTGCAGCAAAATCAAGGAGTGACTTTTGTCCCCTCTCCTGTTGACCCTGGTTTAG
 161 AGCCGTTAACCACTTGGTGAGTTATGTGGGTGTTGTTGCCCTGGGTGGCCTGTGGCTCCGTCCACAAGTCATGCTGAGTT
 241 TTGCAGCCTCTGTGACTTGGAGATGTCCCTTCACCCCTCCCCTTTCACCACCATCCTCTTTTCCTCATGGAAATGTCTGC
 321 TTTATGAAACTATGCACATATTGAAAGTGAGTTGAAACAAATGAGGGTTGGGTAGGAGCTTCCAGGCCTGGGATTTACAC
 401 CACGCCTAGCCCAGCAGAGGCCTTAGTCCCATTTGGGGCTTGGGAGTGACATTTGCTTGAGGCTTATACACTGGTGTGGT
 481 TGCCTGGCTTGCAGGAAATGACCAAGCTCACACATGCTGGCTGAAGCGTAAGCAGACAACTGAGGTACTCTTTTGAAGGA
 561 TGAAGGTGGTGGATTCTCAGCCCTGGGGGTCTTCCTCACCTGAGGACCCTTCAGAGCCACCCTTTCTAGTTTGCATTTCC
 641 TGGTGCACACATTTAAGGCATAACAGCACATTCATCCCTTTGGTTTGGGATCTCAGGAATACAGTCCCATGCAAAGATTC
 721 TCTGGTTTTATGGCTTTTTTCCCTTTCTTTACACCATCCTCTCCCATAAGCACCCATGTCTTTGAATATGAATGTATTTG
 801 TAAAATACCACGTTTCATGTGTGAATATGTGCTTTTACTGTACATAGTGCTATTGTGCAATAGGTCTTATGCTGTTTTCA
 881 CTCAATGTGTGCTAAGATCTAGCCCCATTGACTCTTCTAGAAATGCAGTATTGCTTTGACCTGCCATGTGGCACTCCACA
 961 ATGTCAATTGCAGTTTACACACATTGCCTAAAGTGGGGGACACCTGGGTGCCCCTGACCCCTTGGCACCGGATACAGGCC
1041 ACGATAAACATCCTTTCGTGTGTTCCCTTCTGTGCTTGTGTGGCATGTGTACCCAGGATGGGCCTATAGGTCACAGAGGT
1121 CAGTTTCTCTTTGGTTTTCCAGATTTTCTTTAGAACGGTGACTGACCCTCCTACTTGAGGCCGCCCTTTTCTCCTTATCC
1201 TTGCCAGCACTTGTATTGCCAGACTACCTAATTTTTGCCAGTCTCATGGGTAGATAGTGGTGCAGTGCTTTAACATACAT
1281 TCATCTGATCAGCATTAATTTGGGGAATTTTTTCACTTAGCCTTTCTGGTTTCCCTTCCTGTGCATTGCCCATTTTCTCA
1361 TGGAGTTTCTTATCTTTTTTGGTTTATTCTCAGGAGTTGCTTGTACATTCTTGGGCAATTGCAGATAATTCCAAGAATGC
1441 ATATTTGGGCTGGGTATGGAGGTTCACTGGTAATCCCAGCACTTTGGGAGGCCCAGGCAGAAGGATCGCTGCAGCCCAGG
1521 AGTTCGAGACTAGCCTGGGCAACATAGCGAGACCTCGTCTCTACAAAAAAAAATTAAAAAGGGGGCTTTGGGAGGCCAAG
1601 GCGGGCAGATCATGAGGGCAGGAGATTGAGACCCTCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAATACAAAAAA
1681 TTAGCTGGGCATGGTGGCGCACACCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGGGAATCGCTTAAACCCAGGAGG
1761 CGGAGATTGCAGTGAGCCAAGGTTCCACCACTGCACTCCAGCCTGGCGACAGAGCAAGGCTCCACTCAAAAAAAAGATTT
1841 AAAGGGGAAAAAATTGAAATTTTCTTTGTATCTAGGGGTATCCGTCACTGAACAGAAATTCTTAATTTTGGCTAGGCGTG
1921 ATGGCTCAGGTCTGTAATCCCAGCACTTTCGGTGGCCGGGGTGGGTGGATCACTTGAGGCCAGGAGTTCAAGACCACCCT
2001 GACCAACTTGGTGAAATCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGCAGTGGCGCATGCTTGTAATCCCAGCT
2081 ACTCAGGAGGCAGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGCTGCAGTGAACAGAGACAGTGCCACTGCACAT
2161 CAGCCTGAGTGACAGAGAGACTTTGTCTCAAAAAAAAAAGAAAATTTTAATTTTAATGTAGACAGTATGAATTATCTTGT
2241 TCTGCAGTTGGTTGCTTTTTGATTGCTTATTTAATAGAGTTGTTAAGATATTTTACATCTTCTCCTGTTAGCTGTTCAGC
2321 TTTTCCTTTCATATTGAGAACACTACACAGTGCTGAAGTCCAGCTGGTACACACCGGGGTGACACCTTGGCTGCATCTGT
2401 TCTCAACAGTCAGACACTTCTTCTAATTGGTTGATGCTGGGCTGTACTGGTTGCTAAATATTGCACATCATTTTAAAACT
2481 ATTTGAGATGCACTTTTGTACTCAGGAGGCCAAGGCAGGAGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAA
2561 CACAGCGAGACCTTGTCTCTTAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gagaucgcuccuaaGGUUGUAa 5'
                        ||||||| 
Target 5' tgagaccctcctggCCAACATg 3'
1627 - 1648 140.00 -9.50
2
miRNA  3' gaGAUCGCUCCUAAGGUUGUAa 5'
            |||||  ||:   |||||| 
Target 5' gaCTAGCCTGGG---CAACATa 3'
1528 - 1546 132.00 -14.30
3
miRNA  3' gagAUCGC-UCCUAAGGUUGUAa 5'
             |:|:| || : |::||||| 
Target 5' tagTGGTGCAGTGCTTTAACATa 3'
1255 - 1277 127.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30162031 21 COSMIC
COSN28845608 23 COSMIC
COSN30518353 86 COSMIC
COSN9645357 109 COSMIC
COSN6083431 128 COSMIC
COSN25244132 1197 COSMIC
COSN22831720 1836 COSMIC
COSN20169760 1873 COSMIC
COSN7303869 2245 COSMIC
COSN24331685 2898 COSMIC
COSN26366314 3133 COSMIC
rs7500321 1837 GWAS
rs1137843 2530 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763727813 5 dbSNP
rs370474345 6 dbSNP
rs377208661 8 dbSNP
rs34270830 10 dbSNP
rs766675472 14 dbSNP
rs752064567 15 dbSNP
rs1232995765 16 dbSNP
rs1301810342 17 dbSNP
rs765181361 21 dbSNP
rs768198449 22 dbSNP
rs1274788926 23 dbSNP
rs539205571 25 dbSNP
rs752948369 33 dbSNP
rs778120474 39 dbSNP
rs1451907097 43 dbSNP
rs749498424 53 dbSNP
rs557911918 55 dbSNP
rs1206824638 60 dbSNP
rs1485600229 66 dbSNP
rs1261481858 67 dbSNP
rs930839301 71 dbSNP
rs1483557185 74 dbSNP
rs1310183294 79 dbSNP
rs752472156 91 dbSNP
rs1234916590 94 dbSNP
rs999492231 95 dbSNP
rs1373021187 99 dbSNP
rs1267345995 103 dbSNP
rs1491003797 109 dbSNP
rs1199497391 115 dbSNP
rs1049124584 121 dbSNP
rs1385084175 126 dbSNP
rs915969837 134 dbSNP
rs1371942983 136 dbSNP
rs1035019544 138 dbSNP
rs186123506 146 dbSNP
rs1173338823 148 dbSNP
rs1435731628 164 dbSNP
rs1012939133 165 dbSNP
rs536911384 166 dbSNP
rs1423743401 180 dbSNP
rs952325958 182 dbSNP
rs555261934 185 dbSNP
rs1367353801 186 dbSNP
rs1188501349 191 dbSNP
rs1484847723 192 dbSNP
rs75797916 193 dbSNP
rs541423235 194 dbSNP
rs543660910 205 dbSNP
rs1272329765 208 dbSNP
rs189258410 213 dbSNP
rs578044564 220 dbSNP
rs1011443259 221 dbSNP
rs1393802034 238 dbSNP
rs1354351459 239 dbSNP
rs1313142895 251 dbSNP
rs112492568 260 dbSNP
rs1377699340 263 dbSNP
rs1428745536 276 dbSNP
rs71387634 278 dbSNP
rs922970799 290 dbSNP
rs1007985199 293 dbSNP
rs551669513 294 dbSNP
rs986480167 296 dbSNP
rs961111184 298 dbSNP
rs972272005 299 dbSNP
rs531152661 303 dbSNP
rs566497518 305 dbSNP
rs750645089 308 dbSNP
rs1486518820 309 dbSNP
rs1248203299 314 dbSNP
rs1026554232 315 dbSNP
rs1340059416 325 dbSNP
rs181968292 341 dbSNP
rs984903757 342 dbSNP
rs751420512 352 dbSNP
rs3206851 359 dbSNP
rs1333549257 360 dbSNP
rs59675198 377 dbSNP
rs185069694 388 dbSNP
rs935458058 402 dbSNP
rs569340242 404 dbSNP
rs528835047 405 dbSNP
rs1459898050 413 dbSNP
rs1417311245 422 dbSNP
rs928622816 423 dbSNP
rs781200367 434 dbSNP
rs934671143 438 dbSNP
rs1361840405 443 dbSNP
rs1053011083 444 dbSNP
rs1056374372 457 dbSNP
rs1252515443 458 dbSNP
rs893029617 465 dbSNP
rs896522266 469 dbSNP
rs1443692442 471 dbSNP
rs1467612418 471 dbSNP
rs1181382646 474 dbSNP
rs11547490 479 dbSNP
rs769374189 493 dbSNP
rs1157874807 504 dbSNP
rs11547489 507 dbSNP
rs1278596931 510 dbSNP
rs1238732999 514 dbSNP
rs1336749985 515 dbSNP
rs889661477 522 dbSNP
rs9922735 529 dbSNP
rs1393828231 544 dbSNP
rs190946406 546 dbSNP
rs1019385402 551 dbSNP
rs1398989181 560 dbSNP
rs1320449937 562 dbSNP
rs1015134679 573 dbSNP
rs926826853 579 dbSNP
rs551202349 580 dbSNP
rs1191663758 585 dbSNP
rs896803612 589 dbSNP
rs961786868 603 dbSNP
rs748788795 617 dbSNP
rs1253560914 621 dbSNP
rs183109867 622 dbSNP
rs1029989100 623 dbSNP
rs1246015016 628 dbSNP
rs1307277188 630 dbSNP
rs953173470 633 dbSNP
rs1260628542 641 dbSNP
rs868569363 644 dbSNP
rs986039341 646 dbSNP
rs1206366280 656 dbSNP
rs952256684 667 dbSNP
rs914475624 674 dbSNP
rs541202289 675 dbSNP
rs1268141211 679 dbSNP
rs768484888 690 dbSNP
rs1438637776 692 dbSNP
rs977223509 693 dbSNP
rs774145488 698 dbSNP
rs1424150176 702 dbSNP
rs536850197 704 dbSNP
rs928763508 705 dbSNP
rs935407213 709 dbSNP
rs1180868544 721 dbSNP
rs1433872973 724 dbSNP
rs1361992526 732 dbSNP
rs1195447159 735 dbSNP
rs1474129636 747 dbSNP
rs1241058426 748 dbSNP
rs1471153998 751 dbSNP
rs1159091231 776 dbSNP
rs879184236 782 dbSNP
rs1056487843 789 dbSNP
rs1448433549 790 dbSNP
rs1209093506 795 dbSNP
rs1277770306 795 dbSNP
rs1347634658 808 dbSNP
rs896462629 810 dbSNP
rs948053661 812 dbSNP
rs934744690 813 dbSNP
rs1337523883 816 dbSNP
rs1269733086 817 dbSNP
rs761108195 819 dbSNP
rs1342534929 821 dbSNP
rs1311327083 824 dbSNP
rs141475470 830 dbSNP
rs888018292 833 dbSNP
rs567211870 837 dbSNP
rs947279862 841 dbSNP
rs1408206298 842 dbSNP
rs1418153400 843 dbSNP
rs1167935409 849 dbSNP
rs534654320 861 dbSNP
rs1408639005 869 dbSNP
rs549139017 871 dbSNP
rs553318889 872 dbSNP
rs186362879 874 dbSNP
rs1041290822 884 dbSNP
rs896881751 886 dbSNP
rs1241720014 887 dbSNP
rs1320124275 888 dbSNP
rs200906440 892 dbSNP
rs993882802 894 dbSNP
rs1232943156 904 dbSNP
rs1030102062 909 dbSNP
rs1439775121 914 dbSNP
rs1353792287 918 dbSNP
rs1329499406 920 dbSNP
rs1322146076 926 dbSNP
rs1415070532 927 dbSNP
rs953034111 933 dbSNP
rs1163749862 934 dbSNP
rs986206706 938 dbSNP
rs545459095 942 dbSNP
rs1021331677 945 dbSNP
rs1023239162 948 dbSNP
rs1483409734 964 dbSNP
rs1195001343 967 dbSNP
rs1479880386 974 dbSNP
rs969023618 985 dbSNP
rs977340567 991 dbSNP
rs1459123304 1004 dbSNP
rs1248085889 1013 dbSNP
rs1247842107 1015 dbSNP
rs924421057 1020 dbSNP
rs1335655427 1021 dbSNP
rs959883965 1030 dbSNP
rs992164293 1031 dbSNP
rs918004135 1036 dbSNP
rs1003014438 1043 dbSNP
rs948198056 1044 dbSNP
rs1448988761 1050 dbSNP
rs752581752 1054 dbSNP
rs1428544850 1056 dbSNP
rs777218986 1058 dbSNP
rs909237930 1059 dbSNP
rs1174422505 1064 dbSNP
rs1379586648 1068 dbSNP
rs1351218177 1076 dbSNP
rs1156522874 1079 dbSNP
rs942245841 1088 dbSNP
rs1417681943 1094 dbSNP
rs191734017 1107 dbSNP
rs1407768333 1108 dbSNP
rs1292252838 1111 dbSNP
rs1442150831 1114 dbSNP
rs988929255 1130 dbSNP
rs759921381 1140 dbSNP
rs1213079301 1143 dbSNP
rs183096748 1149 dbSNP
rs1468991550 1150 dbSNP
rs1267409778 1156 dbSNP
rs1036628486 1157 dbSNP
rs145150742 1158 dbSNP
rs1242064623 1180 dbSNP
rs1368607160 1182 dbSNP
rs1394733047 1183 dbSNP
rs1440940036 1188 dbSNP
rs1393524084 1205 dbSNP
rs765702588 1206 dbSNP
rs1309142767 1214 dbSNP
rs1345476701 1216 dbSNP
rs1051476374 1224 dbSNP
rs1344963053 1225 dbSNP
rs888862175 1227 dbSNP
rs1421912585 1235 dbSNP
rs1393768162 1238 dbSNP
rs1193588676 1240 dbSNP
rs1433808666 1242 dbSNP
rs1269638832 1244 dbSNP
rs1184982192 1247 dbSNP
rs1485631080 1255 dbSNP
rs1242916998 1276 dbSNP
rs1218467691 1279 dbSNP
rs1284712187 1284 dbSNP
rs758231240 1294 dbSNP
rs1226161412 1297 dbSNP
rs1234980666 1303 dbSNP
rs1313437869 1308 dbSNP
rs1292896775 1318 dbSNP
rs1249295744 1319 dbSNP
rs752831814 1320 dbSNP
rs1205669682 1321 dbSNP
rs1402188552 1321 dbSNP
rs1173552886 1322 dbSNP
rs1268059182 1325 dbSNP
rs1021698854 1337 dbSNP
rs1489858882 1341 dbSNP
rs1379891955 1342 dbSNP
rs561513788 1352 dbSNP
rs763016514 1360 dbSNP
rs1269466441 1363 dbSNP
rs918425384 1373 dbSNP
rs929717273 1376 dbSNP
rs998705973 1380 dbSNP
rs1484555055 1389 dbSNP
rs1031552509 1405 dbSNP
rs1243451222 1407 dbSNP
rs1048169530 1408 dbSNP
rs1256613965 1415 dbSNP
rs528760837 1422 dbSNP
rs959833054 1425 dbSNP
rs1200958432 1434 dbSNP
rs888093007 1436 dbSNP
rs992613811 1450 dbSNP
rs1249557362 1451 dbSNP
rs540604253 1455 dbSNP
rs1011942234 1459 dbSNP
rs1045142538 1460 dbSNP
rs1279659854 1463 dbSNP
rs1231140624 1466 dbSNP
rs1169949778 1476 dbSNP
rs1353953677 1486 dbSNP
rs1371601650 1487 dbSNP
rs1312585418 1489 dbSNP
rs1396989694 1501 dbSNP
rs764302878 1509 dbSNP
rs1404921802 1512 dbSNP
rs1431978459 1518 dbSNP
rs1461519454 1519 dbSNP
rs969858496 1526 dbSNP
rs868809146 1527 dbSNP
rs909175741 1534 dbSNP
rs138980034 1538 dbSNP
rs1035855495 1539 dbSNP
rs1425355712 1545 dbSNP
rs1248274003 1549 dbSNP
rs1036574917 1550 dbSNP
rs1457800795 1554 dbSNP
rs751721508 1557 dbSNP
rs1021748606 1558 dbSNP
rs968804825 1563 dbSNP
rs1342678865 1565 dbSNP
rs1480708303 1565 dbSNP
rs919516256 1565 dbSNP
rs1305464580 1569 dbSNP
rs1391381656 1571 dbSNP
rs140645606 1574 dbSNP
rs1333370821 1576 dbSNP
rs911218214 1577 dbSNP
rs965292508 1580 dbSNP
rs1164078526 1588 dbSNP
rs977105939 1593 dbSNP
rs1361894195 1601 dbSNP
rs918415503 1603 dbSNP
rs144679356 1604 dbSNP
rs1228866429 1614 dbSNP
rs1191156361 1619 dbSNP
rs889320011 1623 dbSNP
rs1290839935 1626 dbSNP
rs1007696107 1632 dbSNP
rs1042833439 1634 dbSNP
rs1211319097 1638 dbSNP
rs569420070 1642 dbSNP
rs904158436 1656 dbSNP
rs1488833025 1657 dbSNP
rs1186044705 1659 dbSNP
rs998485212 1660 dbSNP
rs1239881914 1661 dbSNP
rs1451623095 1669 dbSNP
rs1189468930 1675 dbSNP
rs947814067 1682 dbSNP
rs1384930387 1683 dbSNP
rs1031334745 1685 dbSNP
rs1370390427 1690 dbSNP
rs746448064 1691 dbSNP
rs906225186 1691 dbSNP
rs757094679 1697 dbSNP
rs1351028888 1699 dbSNP
rs530557971 1700 dbSNP
rs1286683859 1705 dbSNP
rs891954762 1710 dbSNP
rs1171733831 1712 dbSNP
rs1435278299 1712 dbSNP
rs1010379294 1714 dbSNP
rs548761020 1715 dbSNP
rs1200543978 1717 dbSNP
rs567149281 1722 dbSNP
rs1380236817 1724 dbSNP
rs904565047 1729 dbSNP
rs1216282031 1736 dbSNP
rs578106447 1741 dbSNP
rs1007392204 1743 dbSNP
rs1023206044 1745 dbSNP
rs1344377707 1753 dbSNP
rs553015593 1755 dbSNP
rs780805121 1756 dbSNP
rs1215139952 1758 dbSNP
rs756833149 1762 dbSNP
rs187637539 1763 dbSNP
rs1016349212 1771 dbSNP
rs1310980982 1772 dbSNP
rs1242788473 1773 dbSNP
rs963337408 1783 dbSNP
rs1173759731 1796 dbSNP
rs538666404 1800 dbSNP
rs972049127 1804 dbSNP
rs965801150 1808 dbSNP
rs1193981512 1809 dbSNP
rs1488807303 1810 dbSNP
rs141199395 1814 dbSNP
rs1415157373 1817 dbSNP
rs878900317 1828 dbSNP
rs7500321 1837 dbSNP
rs987756621 1844 dbSNP
rs1277783785 1848 dbSNP
rs1390147708 1848 dbSNP
rs983897234 1849 dbSNP
rs1342136432 1854 dbSNP
rs1310778942 1855 dbSNP
rs910689818 1858 dbSNP
rs909722328 1859 dbSNP
rs1446115668 1860 dbSNP
rs1457329269 1862 dbSNP
rs1170928732 1865 dbSNP
rs1478635246 1865 dbSNP
rs575805600 1871 dbSNP
rs868186182 1876 dbSNP
rs1043166349 1879 dbSNP
rs764825305 1884 dbSNP
rs904274491 1885 dbSNP
rs1238528958 1886 dbSNP
rs934451734 1889 dbSNP
rs1052699913 1891 dbSNP
rs192459527 1895 dbSNP
rs1436142424 1901 dbSNP
rs1014558790 1903 dbSNP
rs1385058753 1904 dbSNP
rs1404091985 1906 dbSNP
rs927632631 1918 dbSNP
rs1284625864 1919 dbSNP
rs1022900267 1931 dbSNP
rs1372360694 1932 dbSNP
rs1320196683 1935 dbSNP
rs1291689959 1948 dbSNP
rs905651516 1951 dbSNP
rs1005390042 1952 dbSNP
rs545412817 1953 dbSNP
rs939042795 1955 dbSNP
rs1290173711 1958 dbSNP
rs376438423 1959 dbSNP
rs963452659 1961 dbSNP
rs892028042 1962 dbSNP
rs1391788244 1963 dbSNP
rs972173324 1977 dbSNP
rs1163688527 1983 dbSNP
rs1405120977 1987 dbSNP
rs573371747 1990 dbSNP
rs1415051248 1993 dbSNP
rs946281547 1995 dbSNP
rs540892366 2004 dbSNP
rs1238116691 2007 dbSNP
rs1179279995 2009 dbSNP
rs756058734 2016 dbSNP
rs954714342 2022 dbSNP
rs1173236179 2028 dbSNP
rs1262719889 2045 dbSNP
rs780130084 2047 dbSNP
rs910813152 2049 dbSNP
rs1212673000 2050 dbSNP
rs1322083970 2052 dbSNP
rs1291841287 2057 dbSNP
rs200213537 2061 dbSNP
rs943652975 2062 dbSNP
rs1480527597 2063 dbSNP
rs565441057 2064 dbSNP
rs201295379 2068 dbSNP
rs1414894833 2075 dbSNP
rs1472613139 2083 dbSNP
rs926147951 2100 dbSNP
rs150731329 2101 dbSNP
rs1175170342 2112 dbSNP
rs934396306 2117 dbSNP
rs901162088 2118 dbSNP
rs1415762420 2129 dbSNP
rs1418277581 2133 dbSNP
rs998114219 2147 dbSNP
rs1159824183 2150 dbSNP
rs370558373 2154 dbSNP
rs895461887 2166 dbSNP
rs1353668430 2170 dbSNP
rs1439784587 2173 dbSNP
rs1190822705 2174 dbSNP
rs1265425033 2174 dbSNP
rs1441594528 2174 dbSNP
rs1025619849 2180 dbSNP
rs1309751299 2181 dbSNP
rs1213341366 2182 dbSNP
rs1248681713 2182 dbSNP
rs544592322 2185 dbSNP
rs1016721509 2190 dbSNP
rs1219319555 2190 dbSNP
rs61680990 2190 dbSNP
rs984011750 2190 dbSNP
rs562988638 2191 dbSNP
rs1369225836 2196 dbSNP
rs969650676 2199 dbSNP
rs1044669284 2205 dbSNP
rs745502874 2210 dbSNP
rs1299330570 2211 dbSNP
rs1422131706 2219 dbSNP
rs537995768 2223 dbSNP
rs1342983180 2235 dbSNP
rs1221091817 2245 dbSNP
rs1279626800 2248 dbSNP
rs1433878162 2251 dbSNP
rs927674056 2252 dbSNP
rs1191840187 2262 dbSNP
rs183534247 2266 dbSNP
rs1263719924 2267 dbSNP
rs939131591 2267 dbSNP
rs1005919333 2278 dbSNP
rs1254582062 2285 dbSNP
rs1038190510 2290 dbSNP
rs74014829 2292 dbSNP
rs993559977 2296 dbSNP
rs1255363378 2297 dbSNP
rs913575738 2301 dbSNP
rs1199344867 2303 dbSNP
rs1026405725 2310 dbSNP
rs557117097 2313 dbSNP
rs796173463 2320 dbSNP
rs1043370131 2326 dbSNP
rs926126262 2335 dbSNP
rs1418413650 2342 dbSNP
rs942894135 2344 dbSNP
rs1170333231 2362 dbSNP
rs187705945 2376 dbSNP
rs1404201394 2377 dbSNP
rs375320956 2380 dbSNP
rs536671024 2387 dbSNP
rs1329364727 2400 dbSNP
rs1361031319 2403 dbSNP
rs571442232 2409 dbSNP
rs998228390 2416 dbSNP
rs1438758461 2417 dbSNP
rs964973686 2419 dbSNP
rs377615052 2424 dbSNP
rs1424622912 2426 dbSNP
rs1195517489 2433 dbSNP
rs1047017440 2434 dbSNP
rs1255345409 2435 dbSNP
rs1361603416 2436 dbSNP
rs778721859 2442 dbSNP
rs868393821 2443 dbSNP
rs143767664 2446 dbSNP
rs775685301 2453 dbSNP
rs1226633630 2462 dbSNP
rs367611984 2466 dbSNP
rs1318096631 2477 dbSNP
rs1259613987 2482 dbSNP
rs1220803665 2492 dbSNP
rs1343324234 2502 dbSNP
rs926093841 2503 dbSNP
rs1017294094 2504 dbSNP
rs1222345808 2505 dbSNP
rs1397194272 2510 dbSNP
rs1381977002 2511 dbSNP
rs1288377278 2513 dbSNP
rs956225348 2523 dbSNP
rs988480362 2527 dbSNP
rs1137843 2530 dbSNP
rs1002421851 2532 dbSNP
rs1199003878 2534 dbSNP
rs1173143100 2536 dbSNP
rs1456176847 2540 dbSNP
rs1188158861 2541 dbSNP
rs1241153660 2541 dbSNP
rs1425412306 2544 dbSNP
rs1236297568 2560 dbSNP
rs1177415015 2565 dbSNP
rs1457845116 2567 dbSNP
rs35988035 2567 dbSNP
rs200429878 2568 dbSNP
rs1190131644 2572 dbSNP
rs1207762374 2580 dbSNP
rs1158011729 2582 dbSNP
rs1265163597 2582 dbSNP
rs1329428145 2582 dbSNP
rs1354687861 2582 dbSNP
rs1378358660 2582 dbSNP
rs1439762076 2582 dbSNP
rs1459265933 2582 dbSNP
rs1390488192 2583 dbSNP
rs1423806755 2584 dbSNP
rs1161569645 2600 dbSNP
rs1392840835 2601 dbSNP
rs1407146231 2602 dbSNP
rs1450628100 2602 dbSNP
rs1284475296 2603 dbSNP
rs1490954797 2603 dbSNP
rs949871349 2603 dbSNP
rs1324344301 2604 dbSNP
rs1044063600 2605 dbSNP
rs1231173824 2606 dbSNP
rs1433085046 2607 dbSNP
rs1300133163 2609 dbSNP
rs1034861306 2614 dbSNP
rs536708567 2615 dbSNP
rs1388261163 2617 dbSNP
rs768994542 2620 dbSNP
rs1358456160 2621 dbSNP
rs960409291 2630 dbSNP
rs1420164152 2634 dbSNP
rs926973930 2636 dbSNP
rs555122367 2638 dbSNP
rs1359157878 2639 dbSNP
rs1038314591 2646 dbSNP
rs1282876339 2647 dbSNP
rs913565678 2651 dbSNP
rs539703466 2652 dbSNP
rs1261561671 2653 dbSNP
rs1216350854 2654 dbSNP
rs1210164910 2672 dbSNP
rs967732116 2673 dbSNP
rs896953827 2677 dbSNP
rs1198758499 2679 dbSNP
rs994012344 2680 dbSNP
rs1050949185 2681 dbSNP
rs1275637185 2702 dbSNP
rs926171140 2709 dbSNP
rs1443747869 2713 dbSNP
rs867316378 2716 dbSNP
rs1370101316 2717 dbSNP
rs1400408823 2718 dbSNP
rs1332161570 2723 dbSNP
rs914111758 2723 dbSNP
rs1413388411 2724 dbSNP
rs1175745735 2725 dbSNP
rs1186107551 2725 dbSNP
rs1205667047 2725 dbSNP
rs1244301480 2725 dbSNP
rs1257701607 2725 dbSNP
rs1279344769 2725 dbSNP
rs1316247196 2725 dbSNP
rs1441915507 2725 dbSNP
rs1459197809 2725 dbSNP
rs1478368722 2725 dbSNP
rs59070168 2725 dbSNP
rs79400818 2725 dbSNP
rs1473052008 2740 dbSNP
rs1189924998 2747 dbSNP
rs1384293618 2748 dbSNP
rs1282346429 2750 dbSNP
rs1455731059 2756 dbSNP
rs890543517 2760 dbSNP
rs534138827 2763 dbSNP
rs1340997932 2768 dbSNP
rs1338059567 2771 dbSNP
rs1463626484 2781 dbSNP
rs922803531 2782 dbSNP
rs1017592826 2789 dbSNP
rs1466446058 2790 dbSNP
rs965085707 2793 dbSNP
rs140531733 2805 dbSNP
rs4788108 2807 dbSNP
rs1033227126 2811 dbSNP
rs1472725618 2814 dbSNP
rs1238583140 2825 dbSNP
rs1185451746 2828 dbSNP
rs4788109 2830 dbSNP
rs1237779085 2831 dbSNP
rs761812459 2832 dbSNP
rs1279522080 2834 dbSNP
rs1287387023 2841 dbSNP
rs577463088 2845 dbSNP
rs4788110 2848 dbSNP
rs1038389762 2850 dbSNP
rs988928236 2851 dbSNP
rs767576376 2852 dbSNP
rs58601202 2853 dbSNP
rs1331591365 2854 dbSNP
rs1443842811 2857 dbSNP
rs1035255905 2858 dbSNP
rs1043818808 2864 dbSNP
rs1460638243 2868 dbSNP
rs960566153 2874 dbSNP
rs1009304721 2875 dbSNP
rs562927084 2876 dbSNP
rs967805616 2878 dbSNP
rs572848148 2881 dbSNP
rs1180935156 2889 dbSNP
rs540211551 2892 dbSNP
rs1409725591 2894 dbSNP
rs1245223239 2897 dbSNP
rs1481706585 2897 dbSNP
rs200185241 2898 dbSNP
rs397691249 2898 dbSNP
rs55964416 2898 dbSNP
rs903959520 2898 dbSNP
rs1309288437 2905 dbSNP
rs1224993820 2910 dbSNP
rs1365007957 2917 dbSNP
rs561560444 2918 dbSNP
rs1436180767 2920 dbSNP
rs1161550695 2922 dbSNP
rs1366644535 2926 dbSNP
rs1412958908 2932 dbSNP
rs1469432020 2937 dbSNP
rs926957188 2946 dbSNP
rs1171045737 2950 dbSNP
rs71389573 2956 dbSNP
rs964611370 2960 dbSNP
rs574917509 2968 dbSNP
rs941028760 2970 dbSNP
rs71389574 2971 dbSNP
rs867373070 2977 dbSNP
rs71389575 2978 dbSNP
rs1038262376 2980 dbSNP
rs918500197 2983 dbSNP
rs1190876922 2998 dbSNP
rs1420988991 2998 dbSNP
rs1423284521 2998 dbSNP
rs71389576 2998 dbSNP
rs1480631025 3015 dbSNP
rs542271149 3018 dbSNP
rs929917896 3025 dbSNP
rs1214198967 3032 dbSNP
rs1328731915 3033 dbSNP
rs144736336 3035 dbSNP
rs773334187 3040 dbSNP
rs528232289 3048 dbSNP
rs71389577 3052 dbSNP
rs1411109155 3057 dbSNP
rs1309982124 3067 dbSNP
rs1300152449 3070 dbSNP
rs1219516437 3080 dbSNP
rs776901154 3084 dbSNP
rs944777886 3085 dbSNP
rs1398563808 3101 dbSNP
rs1230563366 3103 dbSNP
rs1290009347 3105 dbSNP
rs941451204 3114 dbSNP
rs1357554849 3120 dbSNP
rs192320207 3121 dbSNP
rs796776067 3122 dbSNP
rs1470386086 3128 dbSNP
rs1431753318 3132 dbSNP
rs905225277 3136 dbSNP
rs937920657 3140 dbSNP
rs1195051729 3147 dbSNP
rs1056405629 3159 dbSNP
rs78686960 3172 dbSNP
rs1484028571 3175 dbSNP
rs532432550 3181 dbSNP
rs892041917 3182 dbSNP
rs1252550276 3184 dbSNP
rs550909063 3190 dbSNP
rs1432709768 3194 dbSNP
rs1255793362 3215 dbSNP
rs1217149172 3216 dbSNP
rs1340347617 3217 dbSNP
rs775909007 3219 dbSNP
rs1020820261 3220 dbSNP
rs1377627472 3221 dbSNP
rs1302290665 3223 dbSNP
rs763033035 3226 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84901.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 84901.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84901.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 5 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
Experimental Support 6 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760641. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_B PAR-CLIP data was present in SRX1760583. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM4903828
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_9124
Location of target site NM_032815 | 3UTR | AGCCUGGGCAACAUAGCGAGACCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000320805.4 | 3UTR | CUGGGCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000320805.4 | 3UTR | UGGGCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000320805.4 | 3UTR | UGGGCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000320805.4 | 3UTR | UAGCCUGGGCAACAUAGCGAGACCUCGUCUCUACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000320805.4 | 3UTR | AGCCUGGGCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000320805.4 | 3UTR | AGCCUGGGCAACAUAGCGAGACCUCGUCUCUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000320805.4 | 3UTR | GCCUGGGCAACAUAGCGAGACCUCGUCUCUACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000320805.4 | 3UTR | CUGGGCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000320805.4 | 3UTR | GCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000320805.4 | 3UTR | AGCCUGGGCAACAUAGCGAGACCUCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
204 hsa-miR-4781-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071728 CCNK cyclin K 2 2
MIRT184858 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT205881 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT218699 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2 2
MIRT223783 OXR1 oxidation resistance 1 2 2
MIRT242435 GAN gigaxonin 2 2
MIRT306825 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT334170 CCND1 cyclin D1 2 6
MIRT339617 TMPO thymopoietin 2 2
MIRT400371 C2ORF68 chromosome 2 open reading frame 68 2 2
MIRT445533 KIF1B kinesin family member 1B 2 4
MIRT450273 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450701 RORA RAR related orphan receptor A 2 2
MIRT451160 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT453775 NUCB1 nucleobindin 1 2 10
MIRT453884 IFRD1 interferon related developmental regulator 1 2 12
MIRT454238 OSBPL10 oxysterol binding protein like 10 2 9
MIRT458661 PAGR1 PAXIP1 associated glutamate rich protein 1 2 12
MIRT466948 STAU1 staufen double-stranded RNA binding protein 1 2 2
MIRT470278 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT471144 PHF19 PHD finger protein 19 2 2
MIRT471873 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT476739 FOXN2 forkhead box N2 2 2
MIRT480453 C16orf72 chromosome 16 open reading frame 72 2 6
MIRT482107 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483374 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT484063 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT496329 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT498659 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 4
MIRT498711 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499322 ZNF485 zinc finger protein 485 2 6
MIRT499711 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499767 CIRH1A UTP4, small subunit processome component 2 6
MIRT499912 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 8
MIRT504946 ZSWIM6 zinc finger SWIM-type containing 6 2 4
MIRT505377 TMEM154 transmembrane protein 154 2 4
MIRT508778 GSG1 germ cell associated 1 2 2
MIRT509793 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT512421 LAYN layilin 2 4
MIRT513321 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT513592 DCTN6 dynactin subunit 6 2 2
MIRT514785 RBM4B RNA binding motif protein 4B 2 2
MIRT514859 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515122 LMOD3 leiomodin 3 2 2
MIRT515271 CSNK1E casein kinase 1 epsilon 2 2
MIRT515594 FBXL13 F-box and leucine rich repeat protein 13 2 2
MIRT515880 PLXDC2 plexin domain containing 2 2 2
MIRT515908 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT515960 C9orf156 tRNA methyltransferase O 2 2
MIRT517210 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517330 ZNF347 zinc finger protein 347 2 2
MIRT517480 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517594 ZNF579 zinc finger protein 579 2 4
MIRT517676 TRIM72 tripartite motif containing 72 2 2
MIRT518215 TRMT10B tRNA methyltransferase 10B 2 2
MIRT518583 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT518777 ZFP14 ZFP14 zinc finger protein 2 2
MIRT519094 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 4
MIRT519112 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT519400 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519446 GLA galactosidase alpha 2 2
MIRT519476 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT519711 ZNF584 zinc finger protein 584 2 4
MIRT521409 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT521522 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT522652 MANEAL mannosidase endo-alpha like 2 2
MIRT523505 GMPS guanine monophosphate synthase 2 4
MIRT523795 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT524062 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524136 DMXL1 Dmx like 1 2 2
MIRT524192 DENND4C DENN domain containing 4C 2 4
MIRT525925 KIAA0391 KIAA0391 2 2
MIRT528021 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT528685 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT528769 CD1D CD1d molecule 2 2
MIRT529373 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529469 ZNF546 zinc finger protein 546 2 2
MIRT529641 ZNF621 zinc finger protein 621 2 2
MIRT530681 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT530752 GPR82 G protein-coupled receptor 82 2 2
MIRT531628 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT531649 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT532179 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT532219 CCDC117 coiled-coil domain containing 117 2 2
MIRT534238 SLC25A16 solute carrier family 25 member 16 2 4
MIRT539952 SLC30A5 solute carrier family 30 member 5 2 2
MIRT540179 MB21D1 Mab-21 domain containing 1 2 2
MIRT540466 ZNF71 zinc finger protein 71 2 2
MIRT540560 PPIC peptidylprolyl isomerase C 2 2
MIRT543265 ZNF662 zinc finger protein 662 2 2
MIRT543596 KIAA1549 KIAA1549 2 2
MIRT543971 RNF20 ring finger protein 20 2 2
MIRT544053 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544605 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT544679 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT547627 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT550668 TRAF1 TNF receptor associated factor 1 2 2
MIRT551533 EMB embigin 2 2
MIRT552443 ZNF449 zinc finger protein 449 2 2
MIRT559265 BAG4 BCL2 associated athanogene 4 2 4
MIRT562479 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT564211 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT565973 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT570524 SHH sonic hedgehog 2 2
MIRT575307 Osbpl10 oxysterol binding protein-like 10 2 6
MIRT618212 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT620115 HARBI1 harbinger transposase derived 1 2 2
MIRT624062 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT626083 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT629868 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630750 COG6 component of oligomeric golgi complex 6 2 2
MIRT631002 ZNF573 zinc finger protein 573 2 2
MIRT631100 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631290 SGSM1 small G protein signaling modulator 1 2 2
MIRT631337 CD300E CD300e molecule 2 2
MIRT631532 MYO6 myosin VI 2 2
MIRT631644 WDR91 WD repeat domain 91 2 4
MIRT632788 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633282 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633593 ABRACL ABRA C-terminal like 2 2
MIRT634074 PLIN3 perilipin 3 2 2
MIRT634163 YME1L1 YME1 like 1 ATPase 2 2
MIRT634257 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634679 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT638384 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638687 GCLM glutamate-cysteine ligase modifier subunit 2 2
MIRT640311 PRR13 proline rich 13 2 2
MIRT641132 NPHP3 nephrocystin 3 2 2
MIRT642315 FPR1 formyl peptide receptor 1 2 2
MIRT643703 KIAA0586 KIAA0586 2 2
MIRT644322 NFKBID NFKB inhibitor delta 2 2
MIRT645741 POLR3A RNA polymerase III subunit A 2 2
MIRT646975 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 2
MIRT648064 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648536 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT649294 NEK8 NIMA related kinase 8 2 2
MIRT650014 KLB klotho beta 2 2
MIRT650551 YIPF4 Yip1 domain family member 4 2 2
MIRT651796 UTP6 UTP6, small subunit processome component 2 2
MIRT652647 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653548 SLC38A7 solute carrier family 38 member 7 2 2
MIRT653895 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT655470 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT657764 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT659118 DENND6A DENN domain containing 6A 2 2
MIRT659377 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659836 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT659954 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT660258 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT663268 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT663766 ZNF285 zinc finger protein 285 2 2
MIRT666198 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT669763 ZNF101 zinc finger protein 101 2 4
MIRT669933 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT670007 GPR156 G protein-coupled receptor 156 2 4
MIRT670465 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670868 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671313 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671959 SPPL3 signal peptide peptidase like 3 2 2
MIRT672281 SHE Src homology 2 domain containing E 2 2
MIRT673654 CYCS cytochrome c, somatic 2 2
MIRT674063 ATXN3 ataxin 3 2 2
MIRT674423 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT674438 MIOX myo-inositol oxygenase 2 4
MIRT674483 BCL2L15 BCL2 like 15 2 2
MIRT675478 NUBPL nucleotide binding protein like 2 2
MIRT675648 TTPAL alpha tocopherol transfer protein like 2 2
MIRT675981 FAM126B family with sequence similarity 126 member B 2 2
MIRT676251 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT677652 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT682718 KIAA1456 KIAA1456 2 2
MIRT687545 MOB1B MOB kinase activator 1B 2 2
MIRT689620 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690035 CCDC90B coiled-coil domain containing 90B 2 2
MIRT691449 CXorf36 chromosome X open reading frame 36 2 2
MIRT691549 FLYWCH2 FLYWCH family member 2 2 2
MIRT691737 LARS leucyl-tRNA synthetase 2 2
MIRT692638 SUSD1 sushi domain containing 1 2 2
MIRT693866 IYD iodotyrosine deiodinase 2 2
MIRT693979 ZNF70 zinc finger protein 70 2 2
MIRT694150 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT695492 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695547 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT696023 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696402 CORO7 coronin 7 2 2
MIRT703028 HEATR5A HEAT repeat containing 5A 2 2
MIRT703559 FKBP14 FK506 binding protein 14 2 2
MIRT705036 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT705120 C4orf29 abhydrolase domain containing 18 2 2
MIRT706611 CYB5B cytochrome b5 type B 2 2
MIRT706635 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706730 RFK riboflavin kinase 2 2
MIRT706868 MAFF MAF bZIP transcription factor F 2 2
MIRT707020 RRP36 ribosomal RNA processing 36 2 2
MIRT707036 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707125 ZNF154 zinc finger protein 154 2 2
MIRT707390 SLC35F6 solute carrier family 35 member F6 2 2
MIRT708664 LYRM7 LYR motif containing 7 2 2
MIRT713010 BBX BBX, HMG-box containing 2 2
MIRT717314 TRAF3IP1 TRAF3 interacting protein 1 2 2
MIRT721912 C6orf201 chromosome 6 open reading frame 201 2 2
MIRT723050 YTHDC1 YTH domain containing 1 2 2
MIRT725038 NDUFAF7 NADH:ubiquinone oxidoreductase complex assembly factor 7 2 2
MIRT755316 SMAD5 SMAD family member 5 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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