miRTarBase - #MIRT500537


—
pre-miRNA Information
pre-miRNA hsa-mir-302b   
Genomic Coordinates chr4: 112648485 - 112648557
Description Homo sapiens miR-302b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-302b-5p
Sequence 11| ACUUUAACAUGGAAGUGCUUUC |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8489942 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs771747691 1 dbSNP
rs1413992790 2 dbSNP
rs1287454726 3 dbSNP
rs1407802102 5 dbSNP
rs556661625 8 dbSNP
rs114318553 9 dbSNP
rs183105707 12 dbSNP
rs759066554 13 dbSNP
rs1338196516 15 dbSNP
Putative Targets

Gene Information
Gene Symbol XPO4   
Synonyms exp4
Description exportin 4
Transcript NM_022459   
Expression
Putative miRNA Targets on XPO4
3'UTR of XPO4
(miRNA target sites are highlighted)		 
>XPO4|NM_022459|3'UTR
   1 ACAACAGAACTTTATGCTTAATTTAGATCCTTTCTGCAAAGTGCACTGAATTGCTGAAAGTTGACTTGAGTCTTGTCCTA
  81 TTCCTCAGTTCATTTGGCCATTTTGGATTTTGGAGAGCCTGAAACTTTGATATGTATGTAATACAGTGAAACAGGAGAGG
 161 TCAACTTGGCATCAGCTTCTGCTGTTAAGTGTTAGCCACAATCTGTCATATATATGTCTTTTAGATTCTGAATGGTGATT
 241 TAAAATTTTCAAAATGAAATTCCATATATGTGCAAACAGATATGGGCACCACGAAATACATATGCAGTGCCTTTTTTCCT
 321 TTTAACATAGGTGGCTAGCCAAAGTTTAGAATTTTTGTCATTAAATATGAAATGGATATATGCTAGGCAGTGTTTCTCAA
 401 AATCTCCATAGATCGCCTGCATCACTTGAGGAGCTGGTGAAAAGGCAGATTCTTAGGCCCAACTGTAGACCTTCAGAGTC
 481 AGAATGTCTGGTTGTTGGGCCCAGGAGTCTTCATGTTAATAAGCTTCTCCCTTTCGTCACCCCAAAAGTTTTGAATCAAT
 561 GAAAGAGACATTGAAAACTCTTAAGAGGTTTTGTGCTTTCTAGCTTTTCCTCCCTTTGATGATTGGGTTTTATAATTCAG
 641 CAGGAAGGGGAAACATCACCAGGGGTTTGTTGGCTTTTTCTTAGCTTGCTTTCTTGCTTGCTTGCTTTCTTGCTTTTCTT
 721 GCTTTCTGTCTCTCTCTTTCTTTTCTCTCTCTCTCTCACATCAACCCAGTGCTGCAGGTTTTGTGTAATACAAGTCACTA
 801 ATCATACTCTGATGCCTGAACTTGAGGAGGAAAATACATGTATATTTTTGTTCCGTAAAAATAACCTTAGGAACTGTAGC
 881 CATTTCATTGCCTTAATTTTAAGAGGAAAATACAAAAACAGCTGATTTGTTTTAGTAAGAAACCACGTCTTGATGCTTCA
 961 GAGTTGGTTTAGGGTGTTAGCTGCTATGAACCTGTTGCCCCTTTCGATCGTGTATTTATGTAGGTTTATCAGTGAAATGA
1041 AAGGCTTGTTTCCGTCTAGTCTAACTTTTTGAGTGTGTTTCTATCCAGCCACATAGCCCATATCTACTCTAAATGGCTTG
1121 CTTAAGCAATAATTATTTTAAAGGATGTGAATCACTGATTCACACAGACTATTGCACGTTGGGGCATTAGGGGCAATAAT
1201 TCTTATCCAGACATGGGAGCCAGTGAATTTAATTTCAGAGATTAAAAATTCACTTTAGATCCTCTAGTTTGATCTCTTAA
1281 TCAGGATTTTTATACAGCTGCCAGGCTCCCCTAATTCAGTGTGCCAGCTTACAATGTGGAAATGAAAGCTAATTTATACA
1361 CAGCAGGCATATGAAACTCCACTCATTGCAGTACTTTCACAGCACAGTGACAGGTAGAGGACTCTGGCACAGGTGCACTC
1441 ATGAAACTCTGCTTCCACCATGTTCCTGACACCTATCTATTAAACCATTCTGCAAATACGGTTTTTCTACCTGATTGCAT
1521 ATAGCATATGTGTCATTACATGTGATGCTGTGCAAAACTTTGTATAATTCTGTGTTATTAACAGTTAACAAAACTGGAGC
1601 ATCTGAATTACATCCAACCTGTGCATGTGATGTTAGGTAGATGTGAATGCAGGGCCTTGGGCCATAACTTACATTTCTCT
1681 CAATTTGATTAGCTTTGAGTCACAATTAAGGGGAAGCAAAAACATCTTGAAAAGACTGCTAGGAAGGAAATTAATATCAG
1761 TCATCCAGAAGTACACGTTTCTGTATTTTAAAAAATACTTTGATGCATTTATTTTTAGGTGTTTTTTTTTTCCCCTTAAA
1841 AAACTTGAAGTGATATGCAGCAGTAATCTATTTGTTTTGCATTGTTCTTGGTGTTTTGTGTTTCCCAGATCCCTCAAGCT
1921 TTCTCAGCTGTTGTGAATTATGTGTATCTGTGTGTGTGCTAAGTACAGTCTCTTTACCAAAGGGCACTGAAACACACAAT
2001 TGACTGGACAGGTCCACGCGCCATGACAAAACTATAATCAAGTTATTAAAACTAAAGAGGAGTGGGAAAGGAATGCCTTG
2081 GTAAGTAAAAAGGCATCTATATTTAATAACTTTTATCCAGATGGCAACATATTTGCAAAATTTGCCCAGATCCTATTACA
2161 ATACTAAAAATAGAAAATTTCACCTCCATATTCCTGAGGTGTAATTTCATTAGACTAGTTTTAGTTTAAAAAGACCTTCT
2241 TCAGATTGGACCAAATAATACTTATAAGATCAGCAGAATGTTGAATATTAGCTCACTGGGGTGGGGAGAAGCCACTACCA
2321 TTTTTTAGGTGATGGGGATGCCACTGAGTTGCAACGGCTAGACCTTTTCAGGGTGGTTGTGTCCATGTTTGCCTGATTGG
2401 ATGCTTATTCACTTTGTGTTTTCTTTTGTTTTATTTTGTCCAATTTTGTCTTTAGCTGTGTTTATTAACTTCTCCGGTCT
2481 TGTTTTGTTTTAATGCTCTTGGCCCAGTGGGTGTCAAGAACACTGGCTTAATTCAAGTCAGTTGATTTTTTTTCTATTAA
2561 AACTGTTGTTAAAATATTTTTTAAAACAAAAACATTATTTGTGCCCTCTTTTATATATGTCAAAGGGACACTGTCAAGTA
2641 TTTCATTTTTAGATTTTTGTTTTATAAAATTTCTGTTGTTCATATAGTATCCTTTAACCTCTAGTTTTCCATACATCCTT
2721 TGTTTGTTTCTCATTTTATTTTCCTTGACCCATTTATTTCCCAAGGCACAATCACTAAAGACTTTGTACTTTCACAGTCT
2801 GTTAATGTGGTAGCACCTGTAACTGTGTTCTTGTTCTGTTAAAAGGATTGATTTGCTTTTATAGTCCTTGTGCTGGATGA
2881 GTGGCTGCCTCAGTAGCAAAACTACCTGACAGTATTTGACAGTGTCCTTTCCAGCACCATTATTTGGGTCTTTCAGGGTG
2961 GCCATCTCTGTTAGAAGACAGTAGCATGTTAACATCACTGCATTGAGTTTTTGTCTGGTGTAAAGTATGACTTTTAATGT
3041 AAACAAACTGCAGGTTTTTTTCAAACTAATTTTAAGAATTTAGTCTTATTTCGTTGTAAACTGTGTATCTAATTATATTA
3121 CATTACTCTGTTCAGATGGGATGGTTACTACCACTTGTCCATGATTTTCATTTGAAAAGCAAGTATCTATATCATTTCCC
3201 CCCAGTCAGCATTATTTAACACTCCCCTTAACTGTCTTTGAACTTTCTCTTTTAACAAAAATGTCAAGTCTTTATAGTTG
3281 TAATATCACCATGTTTCCCATTTCTGTTAATACTTCTATGAACCCCTAAAGTATTGAAGGGAACTAGCTGTCAGTTTCAA
3361 GGATTACAAGTTTGAGTCTCCTAGTATTCAACATCATTCTGAACCCTGAAATAATATTTTTCTCTGTTAAACAATTTTTA
3441 TCTGTTTGCCACCTCTGTTGTTAGAGGTGGTTGTCAATTGACCTTACTAAGTTAGCTGTCTTTGATGAGGAATTATTGTT
3521 ATTGGTTCCTGAATAAAACATTAACCTTTTAAGTCAGAAGGAACCTCGGTACTTCTTAAGGTTTGTTTGTGTTTTCTAAA
3601 ACCAGAGAATAAGGAACTGATTTGGCTATGAGGTTTAACATTATAATTTTCTGTAAGCTTTCCCACAAAAAAACATTGTT
3681 GATTTGAGGATATAATAATGTTTTAATCTTTTTAAAATATAAGTGGTTATTCTCTGACTTGGTAACTATGTTCTGAAAAC
3761 ACTGCATTTAAGAATTTTTAAAAATTGGTTTTCTAAAATTAAAATGTCCAAATTAGGCATATTGCTGAGCTCAAATTGAT
3841 GTGAAATGCCATGGTTCCAGTTGAATTTTAAGCATATTTTCATTTAGATATAAAATATATGAAGTATGCTTTGTTGATTA
3921 TAGTGAGAACCCATGACATAGTTAACCAAAGAATATGTTTGGTTCAAATAAAAATAGAAGCTTAATACTGGGCATTCATA
4001 CTTTTTAAAGAGAATGAATGAAGAAATCGGTTTCCTGCTGTAGTTCTCTATGGGTAAGTCTTAGTAAAGACGAGAATGCT
4081 GAAGTCGGCCGTGGCGATTCCCTCCTAGGAACTGGGAGGTGTGGCTTGCCCATTACCCGCTTGAAGCTCACATCTTTACC
4161 CTCCTCTCCCACTGTGGTTTGATCTTCACCTATTCCCAGGCCCTCCCAGCAATTGGAGAGGTGTCTTTTTTTTTGGTTTT
4241 GGTTTTTTTTCTCCCCGTCTGCATTCTTAGGCCTCTTAGCTATTAGGAACTGTCAGATACATACTAGTAGCTAATTTTCC
4321 TAGCCTGAAATTATATACTGCATCTGCACTATGTACCTACTAGGGATCTGACCTCAAGTGTTTTCTGAGCCCAGGCTTCC
4401 TGGTGTGGTGTCTTTTACCACATAAAATTATTACAAATTGCAAATGTTGGTATTGTGATTTGATTATCTGTACAAAGAAA
4481 GAAGCTCTATGCAGTGAGTTTGTGGTTTAATGGTCACAAAAATGTTAGCACTGCTACCACTCAGCACGTGTAAAATTTTT
4561 TAAATTTATAAATATTAAAATTTTAAACTTACACTAAGACTTTTCAGTTTTATTTAAAGACCCAGGGATGAGTGTACTGT
4641 TTAAATATTTACCTCTATTAACATAACTAATGAAGGTATAAAATTGCATTTAGTTTTTCAGAAGATGCTGCAATATGATT
4721 TTAGGAAATAAGGCTATGTATTGAGCCAGTTATAGGCTGAATATCAGGTTGATAAAATTTTATTTGTATTTTTAAAATTC
4801 ATAAATGGGAGTTAAAATGTGTCTTTTCACTAAATATTTTTATTACATTTTTGTTTTGACCATGTGTGATTTGTTCATGG
4881 GTATTTAGCTAGACTCTTTTATGAAATGCATTGAAATGGTGCTAGTTTGTTTACCATTATAGGAAGATTGACACTGGGGA
4961 CATTACACGGTCCTAAAATAATTTTAAATTTAAAAAAATGAAGACATCTGTACAGATAAAAATCAAGATTTGCATCACCT
5041 TCTGGGAGAACCCGTGGTACTCACAGAATATCCAGTATTAGAAATATAAAAATTTTGTCTATATTTTATAATATTTATCT
5121 CAGCCCACAGTCTTAGAAACAGTTTCACAGTTACTAGTTAAGTCATTATCTTTGGTGCATATTTAGTAAATACTTTTAGC
5201 AAGTCATTCTTTTTGGCCTTTCAGGGAAAGTGGTGAATTACCATATTACTGTGTGCTAGATAGATCCACCCTTTGCCCAG
5281 TGTTAAATCTTGTAAACATATGAAGTGAAAAGTTAATTTTTAAAGAAAATGCATCTTTAAAATGTTCATTTTTAACCTGA
5361 ATTTGCTTTGAATATTCTTTGATTTGTAATGTTGTTATTTAGCTTATATTGAGATTTATTCCACTCCAAAGGTGGATAAA
5441 GAAAAGTTGTTTAAGAAAACCAATTAGAGTGTATTTTGAATTTTTGTTTCTTTCATTACCAAGTGTGGGGCCATACACAC
5521 AGGCTAATCATCTGTCATTTGAGACCCACAGATGATTTCAAAGGTCCCAAATAAATACACATCTATAACTGTTTTTTAAA
5601 AGACATCTTTAATGGTGCTCTCCAAAAATACAATTCGGTTGCTTATGAGTGATGCCTTTGACAGGCTGATTAGATTATAA
5681 AACAGTTTTGTTTTTTTAAACATAGGGTCTCAGATTGAGTCTTGTGCATTCTATGTAATCTCAAATGGCAGTTCAGTTTG
5761 ACTTTCTTTTAAAACTAAGTGGAAATGGTATATTTGGTGAAACTAATGAAAGAATCTTTTGCTGGGAAATTCCATACAGC
5841 ACCCCCAGCAGCATCCTGTCTCAGTCTGGCGTATAATTCAACCTCCTACTGAGTGTCCCTGTAAATTATTTTTAATATAT
5921 AGCATGAGAGTGAACTGAGGTAAGTCATTGATGTTTCCCAGAGATGATGAATGAACAAAAGCAAATAGGATCTGCTAAAC
6001 ATTTTTATTCCCACAGTAGTGAGCAGTTTTGTTCTTGTTTTGATAATGTTCATTTCTGCCTAATCTTAGGCTTCAAATAC
6081 ACCTTTAAGAAAGCCCAAGATGTATTGAGTAGTAGAACTTCTTATTTGTACACCTGTTTATAACTGCACTGCCCTGGATG
6161 TTATGGTTATTTCTAAGGACTGACCTGGTAAAGCTACTTGAACTGGTAGACTGCAGGGTAGAGGCAGACCTAGATTCAAT
6241 GTCTAACTAAGCTGCTTAGGGCTTACATTAATTTCCACAGGTCTGTTATCCATATCATGAGTTTATAAGTGTTCCTCCCA
6321 AAGAAAAAATTTAAAAGTGATGGATGAAATATAATAGTAGATGCTCAATAAATTCCATTGTATTTAAAGATTAAAAAAAA
6401 AAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuuucGUGAAGGU-ACAAUUUCa 5'
               ||| ||:: |||||:|| 
Target 5' tttgcCACCTCTGTTGTTAGAGg 3'
 3445 - 3467 145.00 -10.50
2 
miRNA  3' cuuucguGAAGGUACAAUUUca 5'
                 :|||: |||||||  
Target 5' taatattTTTCTCTGTTAAAca 3'
 3412 - 3433 139.00 -5.60
3 
miRNA  3' cuuUCGUGAA--GGU-ACAAUUUca 5'
             | | :||  ||| |||||||  
Target 5' tccACCCTTTGCCCAGTGTTAAAtc 3'
 5265 - 5289 137.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30469576 86 COSMIC
COSN30476181 105 COSMIC
COSN31523275 147 COSMIC
COSN22508841 270 COSMIC
COSN31565160 354 COSMIC
COSN20110407 357 COSMIC
COSN22090227 568 COSMIC
COSN30165687 756 COSMIC
COSN31643296 888 COSMIC
COSN6223341 986 COSMIC
COSN31577563 1191 COSMIC
COSN31515732 1289 COSMIC
COSN27165382 1756 COSMIC
COSN28955335 1822 COSMIC
COSN7395154 1831 COSMIC
COSN16144538 2057 COSMIC
COSN30166745 2320 COSMIC
COSN31590621 2323 COSMIC
COSN31553343 2355 COSMIC
COSN8776347 2377 COSMIC
COSN31527565 2387 COSMIC
COSN17183201 2389 COSMIC
COSN28084276 2723 COSMIC
COSN6223340 2742 COSMIC
COSN20755767 3169 COSMIC
COSN6538637 3401 COSMIC
COSN32061967 3666 COSMIC
COSN19555755 3715 COSMIC
COSN31534645 3809 COSMIC
COSN31486405 3863 COSMIC
COSN20717902 3967 COSMIC
COSN31488361 4023 COSMIC
COSN22862208 4242 COSMIC
COSN31486877 4344 COSMIC
COSN31593833 4539 COSMIC
COSN16704924 4736 COSMIC
COSN6223339 4773 COSMIC
COSN30006630 4804 COSMIC
COSN5189800 5329 COSMIC
COSN8776346 5353 COSMIC
COSN20092745 6164 COSMIC
COSN15657847 6392 COSMIC
rs4294650 1321 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1039907688 4 dbSNP
rs767740466 5 dbSNP
rs1230640558 9 dbSNP
rs1480131865 10 dbSNP
rs1220243927 12 dbSNP
rs777537358 13 dbSNP
rs574310674 14 dbSNP
rs771902165 17 dbSNP
rs1277519053 22 dbSNP
rs1398111483 27 dbSNP
rs1377169644 29 dbSNP
rs747858899 33 dbSNP
rs546774395 34 dbSNP
rs750790566 34 dbSNP
rs1413402137 36 dbSNP
rs1399612727 44 dbSNP
rs1205598314 45 dbSNP
rs754525135 46 dbSNP
rs1466490796 47 dbSNP
rs1352816539 56 dbSNP
rs1248390943 60 dbSNP
rs1294333721 71 dbSNP
rs545259718 79 dbSNP
rs1051106161 80 dbSNP
rs1347546319 80 dbSNP
rs1319248713 82 dbSNP
rs555396121 90 dbSNP
rs1214032090 93 dbSNP
rs1270338275 95 dbSNP
rs1371967775 103 dbSNP
rs138257493 113 dbSNP
rs765384944 126 dbSNP
rs1221938103 129 dbSNP
rs1293500943 141 dbSNP
rs1026914578 160 dbSNP
rs1263580871 164 dbSNP
rs1270875963 168 dbSNP
rs578232718 169 dbSNP
rs1184693966 189 dbSNP
rs776683388 191 dbSNP
rs548739802 201 dbSNP
rs972393753 202 dbSNP
rs941996181 205 dbSNP
rs1019851864 208 dbSNP
rs566480683 216 dbSNP
rs557848756 224 dbSNP
rs1329206713 228 dbSNP
rs1008011242 237 dbSNP
rs760635756 240 dbSNP
rs969190174 245 dbSNP
rs1268933588 263 dbSNP
rs1361793280 264 dbSNP
rs1228412126 266 dbSNP
rs775245233 280 dbSNP
rs1356866529 281 dbSNP
rs772079845 281 dbSNP
rs1213305212 283 dbSNP
rs1277132877 286 dbSNP
rs753086828 293 dbSNP
rs561721723 310 dbSNP
rs1394257611 321 dbSNP
rs1184319780 327 dbSNP
rs1387129316 334 dbSNP
rs150484862 341 dbSNP
rs1163165147 344 dbSNP
rs542052063 346 dbSNP
rs1030708110 358 dbSNP
rs34040184 358 dbSNP
rs1345142855 359 dbSNP
rs1043335170 365 dbSNP
rs1158397368 378 dbSNP
rs1316588370 380 dbSNP
rs1417419194 385 dbSNP
rs968359145 389 dbSNP
rs568928550 390 dbSNP
rs529346647 393 dbSNP
rs1309534184 395 dbSNP
rs1352319079 397 dbSNP
rs1007031633 400 dbSNP
rs913431367 408 dbSNP
rs9509373 409 dbSNP
rs529157325 414 dbSNP
rs568054958 415 dbSNP
rs938790533 416 dbSNP
rs1460036945 417 dbSNP
rs897227580 421 dbSNP
rs1364615472 424 dbSNP
rs1471253852 430 dbSNP
rs1210380128 434 dbSNP
rs778868671 438 dbSNP
rs548960786 447 dbSNP
rs1470617475 450 dbSNP
rs927367758 452 dbSNP
rs980151959 453 dbSNP
rs1404457153 454 dbSNP
rs770694458 458 dbSNP
rs1328888634 462 dbSNP
rs952706332 464 dbSNP
rs1337193342 470 dbSNP
rs1212963312 472 dbSNP
rs1313509681 475 dbSNP
rs1306232796 476 dbSNP
rs1235733599 479 dbSNP
rs574396391 480 dbSNP
rs1301657090 481 dbSNP
rs1225351998 483 dbSNP
rs527632373 491 dbSNP
rs1203141230 499 dbSNP
rs540385199 500 dbSNP
rs1288573940 502 dbSNP
rs1179898198 512 dbSNP
rs1019482175 514 dbSNP
rs777308561 524 dbSNP
rs1008481543 525 dbSNP
rs545072871 535 dbSNP
rs755629260 536 dbSNP
rs947879506 539 dbSNP
rs533496518 540 dbSNP
rs1168029344 541 dbSNP
rs375313478 545 dbSNP
rs1174157738 547 dbSNP
rs1433968331 553 dbSNP
rs1000548817 556 dbSNP
rs562925726 559 dbSNP
rs1345680310 569 dbSNP
rs991991280 570 dbSNP
rs1281089966 571 dbSNP
rs1219134957 578 dbSNP
rs1344841653 578 dbSNP
rs867474943 581 dbSNP
rs1252016469 587 dbSNP
rs1428911357 593 dbSNP
rs1042436172 596 dbSNP
rs1194080707 598 dbSNP
rs1272577863 602 dbSNP
rs80248712 616 dbSNP
rs1202080450 627 dbSNP
rs1267168757 632 dbSNP
rs1480423392 646 dbSNP
rs892042520 648 dbSNP
rs1483934103 659 dbSNP
rs1280359597 661 dbSNP
rs1209572813 663 dbSNP
rs1194496338 666 dbSNP
rs796516385 673 dbSNP
rs1460032380 674 dbSNP
rs1166752826 680 dbSNP
rs1426124500 684 dbSNP
rs747723801 688 dbSNP
rs577586678 693 dbSNP
rs1308512844 703 dbSNP
rs1007062646 708 dbSNP
rs1382766756 708 dbSNP
rs1324555158 713 dbSNP
rs955540346 716 dbSNP
rs1380790035 724 dbSNP
rs1044520783 725 dbSNP
rs1224975819 726 dbSNP
rs1290109833 726 dbSNP
rs1490286337 726 dbSNP
rs555429536 728 dbSNP
rs34151898 729 dbSNP
rs534246211 730 dbSNP
rs774927160 734 dbSNP
rs1038842024 737 dbSNP
rs770573967 738 dbSNP
rs878915701 738 dbSNP
rs1161269398 740 dbSNP
rs533347942 744 dbSNP
rs762500817 747 dbSNP
rs905832303 747 dbSNP
rs773027525 749 dbSNP
rs961362269 751 dbSNP
rs769454296 753 dbSNP
rs148879753 758 dbSNP
rs758710505 758 dbSNP
rs768696368 758 dbSNP
rs917833828 758 dbSNP
rs912477192 760 dbSNP
rs1248523774 764 dbSNP
rs770427097 765 dbSNP
rs1462277481 766 dbSNP
rs1321291526 768 dbSNP
rs1240242708 775 dbSNP
rs1056329374 778 dbSNP
rs1485203166 779 dbSNP
rs1208627590 785 dbSNP
rs1243284436 788 dbSNP
rs1462266800 789 dbSNP
rs1181142307 796 dbSNP
rs28688540 817 dbSNP
rs371666597 824 dbSNP
rs1372336927 827 dbSNP
rs1168088856 832 dbSNP
rs368155363 836 dbSNP
rs747940236 837 dbSNP
rs1257793503 838 dbSNP
rs923732857 844 dbSNP
rs1177059624 850 dbSNP
rs1408118117 854 dbSNP
rs189155268 855 dbSNP
rs1256024027 865 dbSNP
rs1028096073 866 dbSNP
rs572840202 873 dbSNP
rs1378762682 876 dbSNP
rs1198116896 880 dbSNP
rs1392151905 897 dbSNP
rs1309668741 898 dbSNP
rs1000601489 907 dbSNP
rs1315494508 922 dbSNP
rs544463212 924 dbSNP
rs1264310532 928 dbSNP
rs1326212461 939 dbSNP
rs758920160 946 dbSNP
rs1236349752 947 dbSNP
rs1480782070 955 dbSNP
rs1178560398 956 dbSNP
rs1248230438 958 dbSNP
rs1418284437 963 dbSNP
rs1225733132 974 dbSNP
rs1199801425 978 dbSNP
rs557806268 979 dbSNP
rs1294148547 980 dbSNP
rs1174424061 985 dbSNP
rs1009652641 992 dbSNP
rs1358631999 994 dbSNP
rs985089499 997 dbSNP
rs1232735877 999 dbSNP
rs1371376438 1000 dbSNP
rs1353715004 1003 dbSNP
rs1409616694 1005 dbSNP
rs10507292 1006 dbSNP
rs1222196206 1007 dbSNP
rs184588731 1009 dbSNP
rs972948718 1010 dbSNP
rs1205921057 1023 dbSNP
rs961817313 1024 dbSNP
rs1036370407 1025 dbSNP
rs1296174364 1027 dbSNP
rs1003106630 1028 dbSNP
rs765653196 1030 dbSNP
rs1044574598 1053 dbSNP
rs573247998 1054 dbSNP
rs1479446179 1063 dbSNP
rs1190538936 1067 dbSNP
rs754106036 1068 dbSNP
rs905946617 1069 dbSNP
rs1418110482 1075 dbSNP
rs1172551681 1083 dbSNP
rs1353007909 1086 dbSNP
rs1429311563 1090 dbSNP
rs193069996 1093 dbSNP
rs370016615 1097 dbSNP
rs1014252726 1100 dbSNP
rs896429278 1102 dbSNP
rs1274777153 1109 dbSNP
rs1363197190 1111 dbSNP
rs190522799 1113 dbSNP
rs1292775005 1126 dbSNP
rs1413589376 1129 dbSNP
rs1341074385 1130 dbSNP
rs1037085701 1142 dbSNP
rs940029662 1153 dbSNP
rs546447591 1156 dbSNP
rs935191791 1171 dbSNP
rs1220471122 1173 dbSNP
rs528392080 1175 dbSNP
rs1242647952 1176 dbSNP
rs764402022 1177 dbSNP
rs1438856482 1178 dbSNP
rs566507451 1182 dbSNP
rs1250439191 1191 dbSNP
rs1194378849 1206 dbSNP
rs1449154905 1210 dbSNP
rs4617691 1211 dbSNP
rs533258780 1214 dbSNP
rs1274036068 1219 dbSNP
rs1423141149 1223 dbSNP
rs1213357714 1224 dbSNP
rs748532177 1226 dbSNP
rs1346341948 1229 dbSNP
rs746980749 1238 dbSNP
rs1043486146 1240 dbSNP
rs1332990794 1248 dbSNP
rs1281316106 1250 dbSNP
rs1363816613 1257 dbSNP
rs184724200 1260 dbSNP
rs1316724552 1262 dbSNP
rs1356754430 1269 dbSNP
rs544386189 1275 dbSNP
rs1227555498 1279 dbSNP
rs1284657508 1280 dbSNP
rs1448711817 1285 dbSNP
rs1213541480 1287 dbSNP
rs979234383 1294 dbSNP
rs967870394 1306 dbSNP
rs1246334714 1313 dbSNP
rs775648014 1317 dbSNP
rs140597829 1319 dbSNP
rs4294650 1321 dbSNP
rs1034669890 1327 dbSNP
rs1395001606 1328 dbSNP
rs774283229 1332 dbSNP
rs540898200 1334 dbSNP
rs961573981 1336 dbSNP
rs1403016840 1351 dbSNP
rs1023182747 1352 dbSNP
rs568675404 1362 dbSNP
rs1158570534 1369 dbSNP
rs557767419 1370 dbSNP
rs898634577 1374 dbSNP
rs878981194 1375 dbSNP
rs1469193381 1386 dbSNP
rs374421745 1394 dbSNP
rs970160312 1397 dbSNP
rs748927833 1400 dbSNP
rs1023038790 1402 dbSNP
rs1221789221 1405 dbSNP
rs1267438960 1407 dbSNP
rs1324117518 1408 dbSNP
rs12867715 1413 dbSNP
rs1455831386 1418 dbSNP
rs895792236 1420 dbSNP
rs940101756 1424 dbSNP
rs1440960424 1446 dbSNP
rs1187096412 1448 dbSNP
rs891151556 1450 dbSNP
rs1471364539 1451 dbSNP
rs1180396307 1470 dbSNP
rs1253969871 1472 dbSNP
rs575245206 1475 dbSNP
rs1193437416 1476 dbSNP
rs1467258232 1481 dbSNP
rs1470567128 1481 dbSNP
rs1178026412 1487 dbSNP
rs1051039840 1499 dbSNP
rs1349032528 1500 dbSNP
rs1329128433 1502 dbSNP
rs1337097961 1502 dbSNP
rs1286627784 1508 dbSNP
rs1287439495 1509 dbSNP
rs932612359 1512 dbSNP
rs921185141 1518 dbSNP
rs979286869 1519 dbSNP
rs946558194 1521 dbSNP
rs1265144272 1523 dbSNP
rs191922385 1524 dbSNP
rs1199879630 1527 dbSNP
rs562247559 1528 dbSNP
rs1203492740 1534 dbSNP
rs1439726508 1534 dbSNP
rs913715720 1540 dbSNP
rs553000234 1541 dbSNP
rs778021120 1545 dbSNP
rs1481082955 1547 dbSNP
rs187516645 1550 dbSNP
rs574265486 1554 dbSNP
rs1202220069 1584 dbSNP
rs1376360584 1589 dbSNP
rs1477416165 1594 dbSNP
rs1222566842 1597 dbSNP
rs999810424 1611 dbSNP
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rs960479096 1617 dbSNP
rs1307239332 1632 dbSNP
rs1034722268 1633 dbSNP
rs1365953455 1635 dbSNP
rs1406772417 1635 dbSNP
rs376711189 1636 dbSNP
rs1330390643 1655 dbSNP
rs1371664724 1661 dbSNP
rs980435989 1663 dbSNP
rs1270805831 1670 dbSNP
rs1341784679 1672 dbSNP
rs1226440403 1674 dbSNP
rs1302360276 1687 dbSNP
rs902424969 1696 dbSNP
rs1043987164 1701 dbSNP
rs76825679 1703 dbSNP
rs1318626989 1704 dbSNP
rs969008693 1705 dbSNP
rs1265904242 1710 dbSNP
rs1023236566 1711 dbSNP
rs995750541 1713 dbSNP
rs963228351 1717 dbSNP
rs146678370 1721 dbSNP
rs1447348943 1728 dbSNP
rs182520731 1734 dbSNP
rs933668534 1736 dbSNP
rs1426336341 1744 dbSNP
rs539565644 1747 dbSNP
rs1389963548 1754 dbSNP
rs1174999368 1756 dbSNP
rs1319123224 1768 dbSNP
rs891209874 1776 dbSNP
rs1396217961 1777 dbSNP
rs972425431 1781 dbSNP
rs940303273 1788 dbSNP
rs1193333473 1798 dbSNP
rs1264011844 1798 dbSNP
rs58635671 1801 dbSNP
rs1206223036 1803 dbSNP
rs868011520 1806 dbSNP
rs1263312035 1818 dbSNP
rs535316414 1820 dbSNP
rs996813874 1822 dbSNP
rs899818723 1827 dbSNP
rs539777272 1831 dbSNP
rs147997558 1832 dbSNP
rs992878306 1832 dbSNP
rs1367656155 1836 dbSNP
rs569169206 1842 dbSNP
rs960032243 1844 dbSNP
rs1348416821 1860 dbSNP
rs780811583 1866 dbSNP
rs1433017332 1867 dbSNP
rs1319921435 1872 dbSNP
rs1032128308 1874 dbSNP
rs1383846488 1874 dbSNP
rs1231785782 1891 dbSNP
rs998858754 1897 dbSNP
rs551021846 1910 dbSNP
rs1052270925 1915 dbSNP
rs1324353390 1919 dbSNP
rs939141124 1928 dbSNP
rs866060394 1929 dbSNP
rs1263185694 1933 dbSNP
rs9509372 1934 dbSNP
rs969061062 1935 dbSNP
rs1419466076 1936 dbSNP
rs1049473796 1943 dbSNP
rs1413095582 1946 dbSNP
rs920240881 1948 dbSNP
rs974760425 1966 dbSNP
rs776089605 1976 dbSNP
rs997849635 1978 dbSNP
rs192964262 1979 dbSNP
rs1467831523 1983 dbSNP
rs1168873149 1984 dbSNP
rs1301324946 1985 dbSNP
rs1401699022 1986 dbSNP
rs575269709 1999 dbSNP
rs1290553629 2004 dbSNP
rs1349226928 2014 dbSNP
rs1421760770 2015 dbSNP
rs1190084645 2017 dbSNP
rs1016217795 2019 dbSNP
rs1256712440 2020 dbSNP
rs779225286 2022 dbSNP
rs910145407 2028 dbSNP
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rs757565796 2031 dbSNP
rs1480731803 2036 dbSNP
rs1207078779 2037 dbSNP
rs1048649547 2039 dbSNP
rs955507817 2046 dbSNP
rs754264121 2048 dbSNP
rs948874808 2057 dbSNP
rs1029717982 2058 dbSNP
rs1431267807 2063 dbSNP
rs550634020 2066 dbSNP
rs916042897 2069 dbSNP
rs764158978 2080 dbSNP
rs1358841014 2085 dbSNP
rs1462660307 2092 dbSNP
rs1369083362 2093 dbSNP
rs1273397648 2095 dbSNP
rs960434548 2099 dbSNP
rs992994275 2099 dbSNP
rs924706518 2101 dbSNP
rs73167433 2105 dbSNP
rs531843369 2110 dbSNP
rs1022644973 2116 dbSNP
rs1011278675 2117 dbSNP
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rs1391663230 5426 dbSNP
rs186405425 5432 dbSNP
rs556061078 5435 dbSNP
rs749876801 5436 dbSNP
rs913942186 5438 dbSNP
rs1304082375 5446 dbSNP
rs1349691667 5453 dbSNP
rs546899505 5453 dbSNP
rs988093361 5463 dbSNP
rs1320631991 5467 dbSNP
rs911260620 5469 dbSNP
rs955985111 5471 dbSNP
rs1289760151 5474 dbSNP
rs547021343 5481 dbSNP
rs978582009 5486 dbSNP
rs1456011516 5493 dbSNP
rs1172139057 5494 dbSNP
rs532221475 5494 dbSNP
rs564875643 5500 dbSNP
rs924121278 5503 dbSNP
rs978280763 5510 dbSNP
rs1393616550 5512 dbSNP
rs970945709 5519 dbSNP
rs1446528757 5520 dbSNP
rs1326069770 5528 dbSNP
rs1373075708 5530 dbSNP
rs1232047413 5535 dbSNP
rs1300291160 5537 dbSNP
rs9552278 5543 dbSNP
rs142986523 5564 dbSNP
rs958401334 5565 dbSNP
rs1253303059 5566 dbSNP
rs9552277 5574 dbSNP
rs542915023 5578 dbSNP
rs1470195926 5579 dbSNP
rs879697298 5581 dbSNP
rs1190010516 5586 dbSNP
rs1424840845 5590 dbSNP
rs546925384 5591 dbSNP
rs1171994415 5598 dbSNP
rs1037929675 5610 dbSNP
rs4044 5629 dbSNP
rs1164975029 5630 dbSNP
rs905318845 5637 dbSNP
rs781526073 5653 dbSNP
rs1438567808 5654 dbSNP
rs952597474 5655 dbSNP
rs1362316553 5665 dbSNP
rs1380856592 5669 dbSNP
rs1383702239 5673 dbSNP
rs1157810947 5681 dbSNP
rs1437663425 5691 dbSNP
rs768082350 5693 dbSNP
rs1025412315 5697 dbSNP
rs949529622 5698 dbSNP
rs4470009 5718 dbSNP
rs1219932991 5724 dbSNP
rs1246639541 5725 dbSNP
rs988122837 5726 dbSNP
rs1188640877 5732 dbSNP
rs901067749 5733 dbSNP
rs1040945939 5737 dbSNP
rs1217320683 5751 dbSNP
rs1007261449 5765 dbSNP
rs1287436329 5767 dbSNP
rs1345701428 5775 dbSNP
rs1455328682 5777 dbSNP
rs925884240 5777 dbSNP
rs1339628216 5779 dbSNP
rs1399578660 5781 dbSNP
rs1294149806 5785 dbSNP
rs1357373826 5786 dbSNP
rs889788424 5789 dbSNP
rs1226671674 5790 dbSNP
rs1289313870 5796 dbSNP
rs1318021586 5797 dbSNP
rs1054227927 5803 dbSNP
rs1284264263 5806 dbSNP
rs1352013681 5807 dbSNP
rs751674115 5820 dbSNP
rs1471639536 5825 dbSNP
rs180681606 5828 dbSNP
rs1219993369 5830 dbSNP
rs1180751405 5831 dbSNP
rs577173017 5834 dbSNP
rs750019402 5842 dbSNP
rs1291799399 5844 dbSNP
rs1156798568 5858 dbSNP
rs1359597076 5864 dbSNP
rs758237139 5870 dbSNP
rs987699887 5871 dbSNP
rs954511913 5883 dbSNP
rs1026048406 5885 dbSNP
rs1283639564 5894 dbSNP
rs993179115 5898 dbSNP
rs1225920988 5899 dbSNP
rs963007564 5900 dbSNP
rs1353708444 5914 dbSNP
rs761179982 5916 dbSNP
rs1282975524 5923 dbSNP
rs918135013 5943 dbSNP
rs1417604135 5948 dbSNP
rs1002494334 5950 dbSNP
rs1209026085 5964 dbSNP
rs905433950 5966 dbSNP
rs1481334911 5969 dbSNP
rs1396605096 5976 dbSNP
rs991068115 5986 dbSNP
rs1176568140 5996 dbSNP
rs938296516 6003 dbSNP
rs1432174728 6022 dbSNP
rs1412938498 6034 dbSNP
rs1046587078 6051 dbSNP
rs1422641777 6056 dbSNP
rs1014150574 6062 dbSNP
rs926965532 6063 dbSNP
rs984215275 6065 dbSNP
rs1235724509 6087 dbSNP
rs952471439 6090 dbSNP
rs1187754046 6102 dbSNP
rs1025359983 6105 dbSNP
rs972504810 6117 dbSNP
rs965184129 6118 dbSNP
rs530574891 6124 dbSNP
rs77137435 6131 dbSNP
rs537569945 6138 dbSNP
rs1216585360 6149 dbSNP
rs1273275894 6154 dbSNP
rs576203550 6158 dbSNP
rs1487611388 6160 dbSNP
rs1439262161 6184 dbSNP
rs1196192184 6194 dbSNP
rs1237081628 6196 dbSNP
rs1468832853 6205 dbSNP
rs1258064311 6209 dbSNP
rs889727621 6216 dbSNP
rs1244709861 6217 dbSNP
rs925246749 6218 dbSNP
rs1168354999 6219 dbSNP
rs1420481724 6220 dbSNP
rs765105727 6225 dbSNP
rs1467425591 6236 dbSNP
rs140681126 6239 dbSNP
rs943330188 6240 dbSNP
rs910442619 6247 dbSNP
rs1001287714 6255 dbSNP
rs1311812970 6266 dbSNP
rs987342181 6272 dbSNP
rs1329644876 6285 dbSNP
rs954673979 6292 dbSNP
rs1271197069 6293 dbSNP
rs1341005637 6305 dbSNP
rs536535507 6306 dbSNP
rs1256822958 6317 dbSNP
rs1042498737 6325 dbSNP
rs1215417854 6330 dbSNP
rs566069908 6330 dbSNP
rs189206995 6333 dbSNP
rs1243675024 6337 dbSNP
rs1341257395 6342 dbSNP
rs1478903470 6345 dbSNP
rs1055329709 6351 dbSNP
rs1277667628 6353 dbSNP
rs1398030745 6361 dbSNP
rs1422934694 6361 dbSNP
rs1002262946 6362 dbSNP
rs969688953 6363 dbSNP
rs1025624437 6378 dbSNP
rs1303159819 6387 dbSNP
rs1405340452 6389 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000400602.2 | 3UTR | CUUAAUACUGGGCAUUCAUACUUUUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.647 4.2e-4 0.600 1.2e-3 23 Click to see details
GSE28544 Breast cancer -0.621 6.0e-4 -0.594 1.1e-3 24 Click to see details
GSE17498 Multiple myeloma -0.37 9.4e-3 -0.404 4.9e-3 40 Click to see details
GSE28260 Renal cortex and medulla 0.542 2.8e-2 0.495 4.3e-2 13 Click to see details
GSE19350 CNS germ cell tumors -0.53 3.8e-2 -0.105 3.7e-1 12 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.877 6.1e-2 -0.800 1.0e-1 4 Click to see details
GSE38226 Liver fibrosis 0.328 7.3e-2 0.262 1.3e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.249 1.2e-1 0.435 1.7e-2 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.24 1.5e-1 0.059 4.0e-1 20 Click to see details
GSE17306 Multiple myeloma 0.142 1.7e-1 0.346 7.4e-3 49 Click to see details
GSE27834 Pluripotent stem cells -0.131 3.1e-1 -0.079 3.9e-1 16 Click to see details
GSE32688 Pancreatic cancer 0.032 4.3e-1 0.126 2.5e-1 32 Click to see details
GSE21687 Ependynoma primary tumors -0.011 4.7e-1 -0.098 2.2e-1 64 Click to see details
GSE14794 Lymphoblastoid cells -0.007 4.7e-1 -0.024 4.1e-1 90 Click to see details
GSE21849 B cell lymphoma 0.012 4.8e-1 -0.001 5.0e-1 29 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.013 4.8e-1 -0.213 1.5e-1 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.013 4.8e-1 -0.213 1.5e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
109 hsa-miR-302b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088427 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT142406 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT162006 TFRC transferrin receptor 2 2
MIRT170893 PURB purine rich element binding protein B 2 2
MIRT203348 CCNT2 cyclin T2 2 4
MIRT207353 TGOLN2 trans-golgi network protein 2 2 2
MIRT208232 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT214733 HSPA9 heat shock protein family A (Hsp70) member 9 2 2
MIRT254842 NUP50 nucleoporin 50 2 2
MIRT257285 FOXC1 forkhead box C1 2 2
MIRT338890 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT400032 USP37 ubiquitin specific peptidase 37 2 2
MIRT404031 ATP9A ATPase phospholipid transporting 9A (putative) 2 8
MIRT405843 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 2
MIRT445847 FPGT fucose-1-phosphate guanylyltransferase 2 2
MIRT446350 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446649 BTBD7 BTB domain containing 7 2 2
MIRT447925 SCRN1 secernin 1 2 2
MIRT448575 PLCG1 phospholipase C gamma 1 2 2
MIRT463616 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT465782 TMOD3 tropomodulin 3 2 2
MIRT470261 PRR14L proline rich 14 like 2 2
MIRT471090 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT475612 HMGB1 high mobility group box 1 2 2
MIRT476824 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT483107 TYRP1 tyrosinase related protein 1 2 10
MIRT500537 XPO4 exportin 4 2 2
MIRT502525 EPHA2 EPH receptor A2 2 4
MIRT510989 PER1 period circadian clock 1 2 4
MIRT512540 ZNF793 zinc finger protein 793 2 4
MIRT513868 HOXA5 homeobox A5 2 2
MIRT520756 TFDP1 transcription factor Dp-1 2 6
MIRT524304 CTC1 CST telomere replication complex component 1 2 8
MIRT526306 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526378 LSAMP limbic system-associated membrane protein 2 2
MIRT527438 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527511 ZNF134 zinc finger protein 134 2 2
MIRT528068 HES2 hes family bHLH transcription factor 2 2 2
MIRT528367 ZMYM1 zinc finger MYM-type containing 1 2 4
MIRT531804 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT532323 DUSP4 dual specificity phosphatase 4 2 2
MIRT532431 DHX33 DEAH-box helicase 33 2 2
MIRT534523 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT536660 INIP INTS3 and NABP interacting protein 2 2
MIRT538488 CLOCK clock circadian regulator 2 2
MIRT538593 CDK6 cyclin dependent kinase 6 2 2
MIRT539706 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540306 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT546892 PURA purine rich element binding protein A 2 2
MIRT552738 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552781 YIPF6 Yip1 domain family member 6 2 2
MIRT553742 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 4
MIRT553909 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT554540 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT555319 PPP2CB protein phosphatase 2 catalytic subunit beta 2 2
MIRT555512 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT556221 MB21D2 Mab-21 domain containing 2 2 2
MIRT556292 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT556606 LDOC1L retrotransposon Gag like 6 2 4
MIRT556901 ISOC1 isochorismatase domain containing 1 2 2
MIRT557675 GATA6 GATA binding protein 6 2 2
MIRT560198 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT560493 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT566069 RCC2 regulator of chromosome condensation 2 2 2
MIRT568431 GDNF glial cell derived neurotrophic factor 2 2
MIRT570703 FAM69A family with sequence similarity 69 member A 2 2
MIRT571705 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough 2 2
MIRT573152 ITGA9 integrin subunit alpha 9 2 2
MIRT574410 TFAP2A transcription factor AP-2 alpha 2 2
MIRT614823 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616507 COX7A2L cytochrome c oxidase subunit 7A2 like 2 2
MIRT618301 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT621188 FAM153B family with sequence similarity 153 member B 2 2
MIRT621594 WT1 Wilms tumor 1 2 2
MIRT623814 GGCX gamma-glutamyl carboxylase 2 2
MIRT624407 CCDC171 coiled-coil domain containing 171 2 2
MIRT625136 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT626121 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626874 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627874 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT633670 FAM53B family with sequence similarity 53 member B 2 2
MIRT634285 SYAP1 synapse associated protein 1 2 2
MIRT640925 POU2F1 POU class 2 homeobox 1 2 2
MIRT642028 MYADM myeloid associated differentiation marker 2 2
MIRT643031 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT646122 SLC26A9 solute carrier family 26 member 9 2 2
MIRT646245 SNAP47 synaptosome associated protein 47 2 2
MIRT652457 TMEM2 transmembrane protein 2 2 2
MIRT657018 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT660586 APP amyloid beta precursor protein 2 2
MIRT664316 CD209 CD209 molecule 2 2
MIRT667113 OLA1 Obg like ATPase 1 2 2
MIRT668773 DCP2 decapping mRNA 2 2 2
MIRT698430 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT700216 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT710498 CAPRIN1 cell cycle associated protein 1 2 2
MIRT711836 AMOTL2 angiomotin like 2 2 2
MIRT713226 GPR75 G protein-coupled receptor 75 2 2
MIRT714415 TBC1D16 TBC1 domain family member 16 2 2
MIRT714490 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT715254 F9 coagulation factor IX 2 2
MIRT716250 PALM2 paralemmin 2 2 2
MIRT717261 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT717730 FGF1 fibroblast growth factor 1 2 2
MIRT719262 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719398 SLC15A4 solute carrier family 15 member 4 2 2
MIRT720653 TMEM218 transmembrane protein 218 2 2
MIRT720777 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722059 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-302b Epirubicin approved 41867 Microarray osteosarcoma cells 23845851 2013 down-regualted
miR-302b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 up-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-302b (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-302b Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-302b-5p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-302b-5p Celastrol 12302620 NSC70931 sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Docetaxel 148124 NSC628503 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Doxorubicin 31703 NSC123127 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Taxol 36314 NSC125973 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-302b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-302b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-302b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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