pre-miRNA Information
pre-miRNA hsa-let-7e   
Genomic Coordinates chr19: 51692786 - 51692864
Synonyms MIRNLET7E, hsa-let-7e, let-7e, MIRLET7E
Description Homo sapiens let-7e stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-let-7e-5p
Sequence 8| UGAGGUAGGAGGUUGUAUAGUU |29
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1189776118 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RNF44   
Synonyms -
Description ring finger protein 44
Transcript NM_014901   
Expression
Putative miRNA Targets on RNF44
3'UTR of RNF44
(miRNA target sites are highlighted)
>RNF44|NM_014901|3'UTR
   1 GGCCACGCAGCCGCCTGCCCGGGAGAACCCTGCCTGAAGCTCTGGAAACTTGTGGGTGGGGCCCAGGGAGGATGGGGAGG
  81 GAGTGGCCCAGGCCTGCCCCTTCGCTCCTGCCTGCATTTCCAGAGCTGGTGCCAGGGTCAGCCCAGCGAGGAGTCCCTGC
 161 AATAAGCCCCTGCATTTGCCAAGCTCCAAAGACTCCCTCCCTAGTCTGCCTGCCTGCCCGCCCGCCACGGAGCTGCCTGA
 241 GTGTCCCTGATCGGGTCTCCCTCCTGTGCACCCTCAGGTCCCTCCTTTTCCTGCTGGCACTGAGTGCCAGGGGTCCGCTC
 321 CCTCAGTGGGGCCGGTGGAGATCCTTGGCCCCAGGATGGGCAGACAGAGCACCATCCTGGGTCAGAAGGTCTCATGCTCT
 401 GAAATGGCGTGCCCTCTGCCCAGGTGGCACTGCCAGGTGCGTAGACAGACGGTGTCACGAGCCATTTCCTGAGCCCCAGG
 481 GCTGAATCCCCCCTCCTTGACCCCGAACAGTGAACTCAGGCAGCTGGCTCTGTGTTGGCTGCTGTGAGGGCTGAGTCTGG
 561 TTCCCTAGGGGACCCTCATCCCAGGAACAACATTCCAGCCCCACCCTCAGGCTGGAGGGCGTCCCAGCCTAATCCCGAGC
 641 TGGGGCACACGTATCCTGAGGGGCTTGGGCCATACGGGGAGAGGGAGCCCTGTGTTCCCGGTGGTTGTCCCTCCCAGGGA
 721 TGCAGCCAGACCCGTGCCCAATCTCCTCTCCCTCTGTTGTTTTGCATGAACGTGAGGAGCAGCAGTTTTTGTTCATTCAT
 801 TTGGCCCAAAATCACGTGTAGGATTTGGGGATGTGGATATTTAAGACAATTTCTTTTTTCTTTTGGTTTAATAGGGGCGG
 881 GTATAGGGACCAACTGGGACCGAGTGCCCAGGGGGCCGAGCACGGTCATGCTGGCCGGCCTGCATGCATGCGTGTGCCGG
 961 GCTGGGCTGGGCGGCCGGCGGTCGTGGGGCAGGGTTGGGGGTCTGTGCTCAGCTGATAACTGCCATGCACTGTACTGCAC
1041 ACGTCCCTAGAGCCTACCGGGACCCGACGCTTTTCAGGGCATTTCTCCCTCCAGCCAGGGCCCAACTCCCACCTGCCTGG
1121 GCGAATCTCCTCCAAGGAAGTCCCAGGAGGATGGGGACCAGGAAGGCTGTGGACCCCCATCTCCAGGGGGCCTTCCCAGC
1201 CTGATCCCTGTCCTCCAAGTTCTGGAGGAGGCCGCTGTAGGGTCTGGCTGAGCTTCCCACCCACTTTCCCTGGTCCCAAT
1281 CCTTTCTTGTCCTATACCCAGCTGGGGTTGCTGCCCTGAACGAACTGCGTGTGGGGCCGGCACATCCTAGCAGGCAGCCC
1361 CTGGCGCCTGCTGCCTCAGGGATGCTCCAACCACCCTCGTTCTCCTCGCAGTGGCCCTGGCTCCCACCTCCCGCCCCAGC
1441 CTGCCGTGGGGCCCGTCAGCCTGGTCCCACCCCCATGGAGAACCCAAAGTCTTACTGTATATAACTCCAGGTGACGTTTC
1521 TATATTTATAGCAGTGTTGAAAACCCACGTGTTTTACACAGAACCACCCTCTCCAACCCCTCCCTTCCCGACCCCAACAA
1601 AACGTTTTCAAACCCCTTACAGTTCCTGGGGCAGGCGGAAACAGGCTCACAGATTGTGTGTCGGCTGCAGCAGTGATTCC
1681 AACAAGCAGCTATTGGGGGGGAAACACAGCATTTAAAAAGATCATCATTAAAAAACAAGATTTATACAACAATTACTTAG
1761 GATGTTTGTGATCTGCCGACCTTGCTATAGATGCCATGTTACCAATGATTTCCTGTGGTGGGGGCTTGCCATTGTTTACT
1841 CTCTTATTTACCAACTTCTGGCCTAGGCATGACAGTGGGCACCTTCCCCCAGCCCTGGCTGGGCCCAGCGCCTGTGTTCT
1921 GTGTTAGAAAGGTTTTATATATATATAAAATTACATATATATGTAGAAATATATGTAATTTTGGGGGCCCTGTTCCTTGC
2001 ACATTTTACAGTTACCTCATTTTTCCCATGTATGTATTTGAGAAAATGCTAATATATAGAGAAAAAAATGGTTCTTAAAG
2081 CTTAAATGTGTGGTTTTTTCCATTCCATGGGATTCACATTGGTTTGTAGCATTTAACATAACTAGTATGTTGTATTATAT
2161 ATATGTGTATACTGATTGAAATTTTTAACAGATTTGTACTTTTTTTAAAATGAAAGTTGCTAGTTCTGCTTGACCAAGTA
2241 GTGCAATCATTATTTTTTTTAATATTGTTGCTGATTTCAGAGGGATATTCACTAATAAATGTATGATGTATACCAACGAC
2321 CGCCCACGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuGAUAUGUUGGAGGAUGGAGu 5'
            ||: :| :||| ||:|||| 
Target 5' ccCTG-GC-GCCTGCTGCCTCa 3'
1359 - 1378 138.00 -19.50
2
miRNA  3' uuGAUAUGUUGGA-G--GAUGGAGu 5'
            :|: ||| ::| |  :|||||| 
Target 5' ccTTGCACATTTTACAGTTACCTCa 3'
1995 - 2019 134.00 -12.40
3
miRNA  3' uugauauGUUGGAG--GAUGGAGu 5'
                 |||:|||  || |||| 
Target 5' ccgtgccCAATCTCCTCTCCCTCt 3'
732 - 755 129.00 -16.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30135719 7 COSMIC
COSN30490287 11 COSMIC
COSN1312423 14 COSMIC
COSN30148212 21 COSMIC
COSN30538914 29 COSMIC
COSN26648460 60 COSMIC
COSN26992495 70 COSMIC
COSN30138464 111 COSMIC
COSN28190495 162 COSMIC
COSN30541227 216 COSMIC
COSN1312422 253 COSMIC
COSN31533241 276 COSMIC
COSN31490154 320 COSMIC
COSN31513597 321 COSMIC
COSN31522611 370 COSMIC
COSN5159721 645 COSMIC
COSN5073293 792 COSMIC
COSN31610935 855 COSMIC
COSN6284784 879 COSMIC
COSN26676964 931 COSMIC
COSN26586340 983 COSMIC
COSN26447321 1122 COSMIC
COSN18807505 1142 COSMIC
COSN17223403 1150 COSMIC
COSN20091319 1359 COSMIC
COSN28765250 1407 COSMIC
COSN16320300 1461 COSMIC
COSN31480052 1477 COSMIC
COSN30175816 1513 COSMIC
COSN26556244 1625 COSMIC
COSN26668188 1650 COSMIC
COSN31596602 1652 COSMIC
COSN28038507 1726 COSMIC
COSN26547599 1776 COSMIC
COSN25141695 1788 COSMIC
COSN29199596 1851 COSMIC
COSN16738064 1906 COSMIC
COSN24301112 1982 COSMIC
COSN26586927 2000 COSMIC
COSN31610014 2023 COSMIC
COSN31480677 2040 COSMIC
COSN31523485 2062 COSMIC
COSN31550219 2068 COSMIC
COSN31548219 2085 COSMIC
COSN31556202 2100 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1467387795 2 dbSNP
rs780716424 2 dbSNP
rs758872565 5 dbSNP
rs750889499 6 dbSNP
rs765414265 7 dbSNP
rs572175854 12 dbSNP
rs749375616 12 dbSNP
rs372022977 13 dbSNP
rs368139985 14 dbSNP
rs759349698 17 dbSNP
rs774075493 18 dbSNP
rs374762511 20 dbSNP
rs138869460 21 dbSNP
rs374922307 22 dbSNP
rs769398700 23 dbSNP
rs780066894 25 dbSNP
rs371255816 29 dbSNP
rs973204462 30 dbSNP
rs1318221165 32 dbSNP
rs1399489061 35 dbSNP
rs1410198513 36 dbSNP
rs1293885713 38 dbSNP
rs1160006737 42 dbSNP
rs1369370677 43 dbSNP
rs761056482 45 dbSNP
rs1480197632 47 dbSNP
rs781010905 48 dbSNP
rs1201944914 49 dbSNP
rs766098977 57 dbSNP
rs1219816722 58 dbSNP
rs548739971 63 dbSNP
rs1333167297 65 dbSNP
rs1445269635 68 dbSNP
rs1266369882 74 dbSNP
rs1489617223 78 dbSNP
rs963183316 79 dbSNP
rs1017119300 80 dbSNP
rs1262601541 95 dbSNP
rs1286184802 97 dbSNP
rs1195768449 98 dbSNP
rs983406388 99 dbSNP
rs1404692774 100 dbSNP
rs536576652 103 dbSNP
rs1209122873 104 dbSNP
rs569523030 105 dbSNP
rs1401240300 107 dbSNP
rs1032004229 117 dbSNP
rs57598427 118 dbSNP
rs1228229626 128 dbSNP
rs1291064311 130 dbSNP
rs1024554177 137 dbSNP
rs1323835140 139 dbSNP
rs1221970678 147 dbSNP
rs1369966887 166 dbSNP
rs1275588471 167 dbSNP
rs965830868 168 dbSNP
rs1018808086 171 dbSNP
rs1014202080 175 dbSNP
rs894510005 177 dbSNP
rs1255454812 180 dbSNP
rs1007288131 190 dbSNP
rs1182331129 193 dbSNP
rs189245469 193 dbSNP
rs1417016039 196 dbSNP
rs1034830442 207 dbSNP
rs760510643 210 dbSNP
rs890834 215 dbSNP
rs1405750341 216 dbSNP
rs546257383 219 dbSNP
rs1358022364 220 dbSNP
rs371465141 221 dbSNP
rs184546754 223 dbSNP
rs1010530456 224 dbSNP
rs879826785 227 dbSNP
rs890375152 228 dbSNP
rs1051713672 229 dbSNP
rs931621195 236 dbSNP
rs1354743199 237 dbSNP
rs921619593 238 dbSNP
rs1276622251 239 dbSNP
rs1037831542 241 dbSNP
rs561904884 243 dbSNP
rs941799750 251 dbSNP
rs114997588 252 dbSNP
rs1261069526 253 dbSNP
rs928110586 255 dbSNP
rs1177819199 256 dbSNP
rs982970923 259 dbSNP
rs1441185681 260 dbSNP
rs948250515 264 dbSNP
rs1279531636 266 dbSNP
rs951585225 271 dbSNP
rs1214067309 275 dbSNP
rs1335601680 282 dbSNP
rs917486218 283 dbSNP
rs993064099 285 dbSNP
rs1361476942 290 dbSNP
rs958676714 293 dbSNP
rs1034368868 308 dbSNP
rs1000654022 310 dbSNP
rs989618162 314 dbSNP
rs542793444 316 dbSNP
rs1335210375 317 dbSNP
rs1280823917 328 dbSNP
rs555690547 333 dbSNP
rs923972438 334 dbSNP
rs1238593825 337 dbSNP
rs1458871870 340 dbSNP
rs1196317504 356 dbSNP
rs1169261038 359 dbSNP
rs113493498 364 dbSNP
rs965966265 369 dbSNP
rs1173864221 372 dbSNP
rs1416747828 379 dbSNP
rs1464543658 380 dbSNP
rs1018902852 381 dbSNP
rs763307725 382 dbSNP
rs1449385610 383 dbSNP
rs1321974730 388 dbSNP
rs1382654210 389 dbSNP
rs1437426847 396 dbSNP
rs1276710988 397 dbSNP
rs762316264 399 dbSNP
rs985944812 405 dbSNP
rs1217940608 408 dbSNP
rs73806255 408 dbSNP
rs559533106 409 dbSNP
rs1051660632 412 dbSNP
rs1288839376 413 dbSNP
rs1241186020 414 dbSNP
rs994606959 416 dbSNP
rs1185214272 437 dbSNP
rs996111730 438 dbSNP
rs1238304550 439 dbSNP
rs189524333 440 dbSNP
rs559116072 441 dbSNP
rs1467639894 448 dbSNP
rs1276940142 450 dbSNP
rs1406203014 451 dbSNP
rs542335222 451 dbSNP
rs941732139 458 dbSNP
rs534316765 464 dbSNP
rs1399535602 479 dbSNP
rs907612179 486 dbSNP
rs769293234 488 dbSNP
rs745486976 492 dbSNP
rs948219973 494 dbSNP
rs1283408240 496 dbSNP
rs930127671 499 dbSNP
rs371032202 504 dbSNP
rs1054245600 505 dbSNP
rs1216790343 506 dbSNP
rs935448408 508 dbSNP
rs923909122 509 dbSNP
rs993013062 521 dbSNP
rs958953881 528 dbSNP
rs1368254414 530 dbSNP
rs1473295058 536 dbSNP
rs927246049 542 dbSNP
rs1358940730 544 dbSNP
rs976736801 556 dbSNP
rs1372019340 565 dbSNP
rs1362487656 567 dbSNP
rs1168742791 572 dbSNP
rs781183145 578 dbSNP
rs1394252227 579 dbSNP
rs1333353424 580 dbSNP
rs573270942 592 dbSNP
rs116766794 595 dbSNP
rs969157743 602 dbSNP
rs1352582987 603 dbSNP
rs1020353012 606 dbSNP
rs1287577042 617 dbSNP
rs1481949267 619 dbSNP
rs1010346308 620 dbSNP
rs1424204734 621 dbSNP
rs1443493875 622 dbSNP
rs1185852459 626 dbSNP
rs954502907 627 dbSNP
rs542361503 636 dbSNP
rs1175237936 637 dbSNP
rs973535465 639 dbSNP
rs961832243 644 dbSNP
rs1365611149 650 dbSNP
rs1030182203 651 dbSNP
rs996057219 655 dbSNP
rs1402912539 656 dbSNP
rs1003142910 661 dbSNP
rs900416282 662 dbSNP
rs1447062830 668 dbSNP
rs1016631780 672 dbSNP
rs376577496 675 dbSNP
rs886127741 678 dbSNP
rs1256043192 684 dbSNP
rs1346384712 690 dbSNP
rs1206067403 691 dbSNP
rs1236768792 692 dbSNP
rs770298915 699 dbSNP
rs555463364 700 dbSNP
rs373306302 705 dbSNP
rs1053970920 709 dbSNP
rs1252997055 710 dbSNP
rs1431657066 714 dbSNP
rs1322815243 716 dbSNP
rs1175504864 729 dbSNP
rs1306822438 732 dbSNP
rs1222412777 733 dbSNP
rs1168363830 734 dbSNP
rs1351964469 737 dbSNP
rs1399288931 738 dbSNP
rs935527744 741 dbSNP
rs1299660750 744 dbSNP
rs895955037 745 dbSNP
rs1365100589 746 dbSNP
rs569452105 748 dbSNP
rs1385854936 749 dbSNP
rs746947270 750 dbSNP
rs944013391 751 dbSNP
rs937549425 754 dbSNP
rs1256654461 763 dbSNP
rs1317829085 765 dbSNP
rs1199741739 766 dbSNP
rs1253418303 771 dbSNP
rs1403837143 772 dbSNP
rs1363115715 777 dbSNP
rs185439880 795 dbSNP
rs1268150435 796 dbSNP
rs1294754470 798 dbSNP
rs1458385417 799 dbSNP
rs749006142 803 dbSNP
rs911235379 806 dbSNP
rs370303296 808 dbSNP
rs1422907269 810 dbSNP
rs1363143148 815 dbSNP
rs979451752 816 dbSNP
rs986008698 816 dbSNP
rs920391696 825 dbSNP
rs973245521 830 dbSNP
rs1293686659 839 dbSNP
rs1366911457 841 dbSNP
rs1277015215 843 dbSNP
rs1397658884 843 dbSNP
rs1340496991 849 dbSNP
rs962208398 850 dbSNP
rs192785630 853 dbSNP
rs1221125472 860 dbSNP
rs970332870 861 dbSNP
rs1480219732 864 dbSNP
rs1265405772 865 dbSNP
rs1211709765 866 dbSNP
rs755106713 870 dbSNP
rs1012885111 873 dbSNP
rs1260591151 878 dbSNP
rs111665340 879 dbSNP
rs954783756 881 dbSNP
rs1030460481 883 dbSNP
rs1165202067 885 dbSNP
rs1386779743 886 dbSNP
rs974566870 891 dbSNP
rs1417452639 893 dbSNP
rs1297100407 896 dbSNP
rs1360554545 900 dbSNP
rs187571163 901 dbSNP
rs556406485 902 dbSNP
rs1377601434 903 dbSNP
rs1228172530 906 dbSNP
rs1316127302 914 dbSNP
rs546170390 917 dbSNP
rs780149192 918 dbSNP
rs1285436965 922 dbSNP
rs886079209 923 dbSNP
rs1025945542 924 dbSNP
rs1013248131 925 dbSNP
rs1235723850 926 dbSNP
rs1482883952 927 dbSNP
rs1343222846 930 dbSNP
rs896236327 931 dbSNP
rs1244726933 932 dbSNP
rs1437463992 933 dbSNP
rs1157636379 935 dbSNP
rs368457827 936 dbSNP
rs889769869 937 dbSNP
rs937509505 940 dbSNP
rs906048943 943 dbSNP
rs1384163955 945 dbSNP
rs1287001581 948 dbSNP
rs931332367 949 dbSNP
rs539483138 951 dbSNP
rs1038060152 952 dbSNP
rs567348348 952 dbSNP
rs947639278 958 dbSNP
rs907721453 959 dbSNP
rs756374559 972 dbSNP
rs1244781642 973 dbSNP
rs988809899 973 dbSNP
rs970470148 974 dbSNP
rs933342623 976 dbSNP
rs1238477365 977 dbSNP
rs923337348 978 dbSNP
rs974848239 979 dbSNP
rs964555418 980 dbSNP
rs1414430675 981 dbSNP
rs1261680035 983 dbSNP
rs1187177263 984 dbSNP
rs957983300 1000 dbSNP
rs1331096027 1001 dbSNP
rs1032588849 1002 dbSNP
rs765675784 1004 dbSNP
rs1273181581 1005 dbSNP
rs1366953970 1007 dbSNP
rs548953507 1008 dbSNP
rs1203432322 1009 dbSNP
rs1315980436 1012 dbSNP
rs984692181 1017 dbSNP
rs1197819485 1020 dbSNP
rs530686536 1023 dbSNP
rs1019814337 1027 dbSNP
rs1218871591 1028 dbSNP
rs1245630130 1029 dbSNP
rs145082256 1030 dbSNP
rs374254295 1032 dbSNP
rs1432170634 1033 dbSNP
rs889859249 1042 dbSNP
rs1013195613 1043 dbSNP
rs1325298776 1045 dbSNP
rs960388122 1046 dbSNP
rs1033368829 1047 dbSNP
rs1292794739 1054 dbSNP
rs1411900713 1056 dbSNP
rs1050292029 1058 dbSNP
rs116004861 1059 dbSNP
rs906001838 1063 dbSNP
rs1335905504 1065 dbSNP
rs1043623697 1066 dbSNP
rs1217881275 1068 dbSNP
rs1400345044 1069 dbSNP
rs533241249 1074 dbSNP
rs898523146 1079 dbSNP
rs1288773069 1081 dbSNP
rs780206377 1082 dbSNP
rs777332399 1087 dbSNP
rs940614499 1088 dbSNP
rs907690314 1089 dbSNP
rs892046114 1094 dbSNP
rs1374003455 1097 dbSNP
rs1053395220 1098 dbSNP
rs369109048 1105 dbSNP
rs1413391014 1109 dbSNP
rs923288067 1121 dbSNP
rs376971731 1122 dbSNP
rs540621262 1123 dbSNP
rs1328112963 1126 dbSNP
rs1242423256 1127 dbSNP
rs943458429 1129 dbSNP
rs1283352333 1134 dbSNP
rs757555440 1143 dbSNP
rs1247655919 1145 dbSNP
rs183450890 1148 dbSNP
rs949245345 1151 dbSNP
rs1257856927 1155 dbSNP
rs373002877 1159 dbSNP
rs1205079174 1165 dbSNP
rs916329663 1176 dbSNP
rs991012580 1190 dbSNP
rs1185926765 1191 dbSNP
rs1338308392 1193 dbSNP
rs1271941632 1195 dbSNP
rs752123988 1206 dbSNP
rs1378561585 1208 dbSNP
rs985026538 1210 dbSNP
rs1453218389 1211 dbSNP
rs1229955098 1212 dbSNP
rs950612893 1216 dbSNP
rs1387102008 1218 dbSNP
rs919160469 1222 dbSNP
rs1314212986 1228 dbSNP
rs978346726 1230 dbSNP
rs966967505 1233 dbSNP
rs1306560236 1234 dbSNP
rs1334543168 1237 dbSNP
rs1239227060 1238 dbSNP
rs992057893 1242 dbSNP
rs960340476 1244 dbSNP
rs1199201875 1247 dbSNP
rs1262910182 1248 dbSNP
rs1461999000 1251 dbSNP
rs777319930 1260 dbSNP
rs1019904541 1262 dbSNP
rs1418689648 1270 dbSNP
rs986945806 1272 dbSNP
rs1033319536 1279 dbSNP
rs1464511789 1282 dbSNP
rs1306324988 1286 dbSNP
rs954231635 1289 dbSNP
rs1431628639 1292 dbSNP
rs1028397595 1293 dbSNP
rs369984524 1294 dbSNP
rs1329042702 1295 dbSNP
rs1001926817 1298 dbSNP
rs996002984 1307 dbSNP
rs898456364 1313 dbSNP
rs1231724236 1314 dbSNP
rs1163447523 1318 dbSNP
rs1472081184 1320 dbSNP
rs111318493 1321 dbSNP
rs1256537855 1322 dbSNP
rs554998930 1329 dbSNP
rs764461736 1338 dbSNP
rs891992390 1339 dbSNP
rs1198775604 1341 dbSNP
rs1053341797 1344 dbSNP
rs1249089939 1347 dbSNP
rs1429990978 1350 dbSNP
rs886339140 1355 dbSNP
rs371127354 1361 dbSNP
rs542861102 1365 dbSNP
rs1206688973 1366 dbSNP
rs1462180601 1373 dbSNP
rs1299464565 1378 dbSNP
rs1388115059 1390 dbSNP
rs1311233846 1394 dbSNP
rs575757069 1398 dbSNP
rs3734169 1407 dbSNP
rs376597633 1408 dbSNP
rs376915253 1408 dbSNP
rs949213089 1408 dbSNP
rs538976720 1414 dbSNP
rs1276734969 1420 dbSNP
rs1307214447 1424 dbSNP
rs571596665 1432 dbSNP
rs909280054 1433 dbSNP
rs1221898941 1439 dbSNP
rs1049172986 1441 dbSNP
rs769549609 1443 dbSNP
rs552593282 1445 dbSNP
rs929121613 1446 dbSNP
rs1418540815 1453 dbSNP
rs59065142 1454 dbSNP
rs374225265 1455 dbSNP
rs978145947 1455 dbSNP
rs1423580017 1465 dbSNP
rs1232444771 1467 dbSNP
rs1306361393 1468 dbSNP
rs945049915 1473 dbSNP
rs567252533 1474 dbSNP
rs992008708 1475 dbSNP
rs987087047 1476 dbSNP
rs1383197363 1484 dbSNP
rs954162123 1488 dbSNP
rs939279555 1490 dbSNP
rs1028913531 1495 dbSNP
rs549024287 1497 dbSNP
rs926269950 1499 dbSNP
rs1292591274 1507 dbSNP
rs1302588928 1510 dbSNP
rs1404164651 1511 dbSNP
rs1393496801 1512 dbSNP
rs1361605801 1513 dbSNP
rs1164212091 1515 dbSNP
rs1214519036 1522 dbSNP
rs1241513545 1527 dbSNP
rs980841486 1546 dbSNP
rs1188099942 1548 dbSNP
rs1253758701 1549 dbSNP
rs1469888039 1558 dbSNP
rs967769075 1564 dbSNP
rs1022445761 1565 dbSNP
rs974163053 1567 dbSNP
rs987927321 1570 dbSNP
rs1472702185 1571 dbSNP
rs963133100 1584 dbSNP
rs956164001 1589 dbSNP
rs573655713 1590 dbSNP
rs1015701735 1593 dbSNP
rs1380948444 1596 dbSNP
rs1452204703 1596 dbSNP
rs1316061860 1600 dbSNP
rs1385256188 1603 dbSNP
rs369728173 1604 dbSNP
rs902095620 1613 dbSNP
rs1290438399 1615 dbSNP
rs1283622532 1616 dbSNP
rs1317471368 1618 dbSNP
rs1004166346 1619 dbSNP
rs1326751854 1626 dbSNP
rs1254034161 1632 dbSNP
rs1460661452 1635 dbSNP
rs1017888864 1636 dbSNP
rs781127633 1637 dbSNP
rs887805340 1638 dbSNP
rs1437405480 1642 dbSNP
rs369634046 1645 dbSNP
rs1176177031 1646 dbSNP
rs150370874 1648 dbSNP
rs1401796649 1650 dbSNP
rs894953798 1651 dbSNP
rs1404517658 1656 dbSNP
rs1351332747 1660 dbSNP
rs530633851 1662 dbSNP
rs897629311 1663 dbSNP
rs1408635675 1665 dbSNP
rs1440230358 1668 dbSNP
rs1056228427 1669 dbSNP
rs939225691 1675 dbSNP
rs926520893 1678 dbSNP
rs1042203047 1679 dbSNP
rs980737827 1681 dbSNP
rs570492370 1683 dbSNP
rs1400516043 1692 dbSNP
rs914925433 1693 dbSNP
rs1204109349 1695 dbSNP
rs1386970528 1695 dbSNP
rs987857336 1696 dbSNP
rs956448511 1697 dbSNP
rs1470909689 1698 dbSNP
rs1051310303 1702 dbSNP
rs1427861621 1702 dbSNP
rs1457508594 1702 dbSNP
rs1029458515 1703 dbSNP
rs1408435024 1708 dbSNP
rs576443668 1709 dbSNP
rs56354057 1720 dbSNP
rs1444540569 1722 dbSNP
rs966263967 1723 dbSNP
rs1344862270 1724 dbSNP
rs974634380 1725 dbSNP
rs1284996063 1726 dbSNP
rs1247235705 1735 dbSNP
rs1337131224 1736 dbSNP
rs1018253414 1737 dbSNP
rs1192440430 1739 dbSNP
rs1007826364 1740 dbSNP
rs1219677538 1744 dbSNP
rs1267494477 1746 dbSNP
rs533305653 1749 dbSNP
rs1490338613 1750 dbSNP
rs1200697866 1752 dbSNP
rs1269855728 1754 dbSNP
rs1431920991 1756 dbSNP
rs1474664839 1757 dbSNP
rs1167696813 1760 dbSNP
rs887743632 1768 dbSNP
rs1411846776 1769 dbSNP
rs1364998108 1773 dbSNP
rs908611742 1779 dbSNP
rs1027663601 1781 dbSNP
rs757685014 1796 dbSNP
rs1429814965 1801 dbSNP
rs1024277437 1805 dbSNP
rs993503209 1811 dbSNP
rs1013425577 1812 dbSNP
rs774904056 1826 dbSNP
rs1217576717 1829 dbSNP
rs559682354 1837 dbSNP
rs1275490834 1841 dbSNP
rs1224054615 1845 dbSNP
rs1435064540 1846 dbSNP
rs1056506997 1854 dbSNP
rs1033623102 1856 dbSNP
rs1323043274 1858 dbSNP
rs1001107541 1859 dbSNP
rs1181911428 1864 dbSNP
rs903721441 1867 dbSNP
rs939170029 1869 dbSNP
rs1425450816 1871 dbSNP
rs1165510189 1886 dbSNP
rs1382758034 1888 dbSNP
rs1436202484 1899 dbSNP
rs1327909381 1903 dbSNP
rs370259202 1906 dbSNP
rs1042127708 1909 dbSNP
rs1009324391 1910 dbSNP
rs759319674 1916 dbSNP
rs890773666 1931 dbSNP
rs1173455177 1932 dbSNP
rs1415796067 1933 dbSNP
rs776355644 1934 dbSNP
rs1045356800 1941 dbSNP
rs946663607 1943 dbSNP
rs1202139530 1948 dbSNP
rs1242841059 1948 dbSNP
rs535686438 1948 dbSNP
rs1447643838 1954 dbSNP
rs1249748945 1955 dbSNP
rs921512617 1958 dbSNP
rs1188975448 1960 dbSNP
rs1390715916 1961 dbSNP
rs1052099566 1972 dbSNP
rs1335834014 1973 dbSNP
rs1038649621 1975 dbSNP
rs916770958 1978 dbSNP
rs1304232205 1979 dbSNP
rs1334617412 1984 dbSNP
rs1238982249 1986 dbSNP
rs935019974 1992 dbSNP
rs1280690809 1995 dbSNP
rs1237142345 1997 dbSNP
rs1202238696 1999 dbSNP
rs562712276 1999 dbSNP
rs1262849619 2008 dbSNP
rs1461945568 2009 dbSNP
rs1208346688 2016 dbSNP
rs908717401 2018 dbSNP
rs982804614 2024 dbSNP
rs1437367027 2029 dbSNP
rs1182580273 2030 dbSNP
rs1314133671 2032 dbSNP
rs1414178002 2038 dbSNP
rs922331867 2038 dbSNP
rs1279506711 2042 dbSNP
rs971465471 2050 dbSNP
rs917358390 2055 dbSNP
rs770862014 2057 dbSNP
rs1467285304 2059 dbSNP
rs966584161 2067 dbSNP
rs958775850 2068 dbSNP
rs1391536957 2069 dbSNP
rs1227751303 2073 dbSNP
rs1034009102 2074 dbSNP
rs78596722 2080 dbSNP
rs1229649734 2088 dbSNP
rs1352883269 2090 dbSNP
rs192714079 2093 dbSNP
rs1283080288 2094 dbSNP
rs1324655235 2100 dbSNP
rs534028162 2109 dbSNP
rs1020818807 2110 dbSNP
rs952332115 2111 dbSNP
rs1009293237 2112 dbSNP
rs1027899813 2120 dbSNP
rs1301425614 2126 dbSNP
rs186868593 2130 dbSNP
rs771941954 2137 dbSNP
rs1338976645 2146 dbSNP
rs1196516536 2157 dbSNP
rs757240274 2158 dbSNP
rs1449859484 2159 dbSNP
rs575629358 2161 dbSNP
rs1035045673 2163 dbSNP
rs1198544221 2164 dbSNP
rs1269356325 2171 dbSNP
rs1434734369 2174 dbSNP
rs1306885253 2175 dbSNP
rs1168060484 2176 dbSNP
rs1372208133 2177 dbSNP
rs1427189304 2191 dbSNP
rs1462130719 2191 dbSNP
rs557168750 2206 dbSNP
rs1169089685 2207 dbSNP
rs1403664030 2207 dbSNP
rs904991055 2210 dbSNP
rs1388955407 2213 dbSNP
rs1293864256 2215 dbSNP
rs568502767 2216 dbSNP
rs996909242 2219 dbSNP
rs1157301281 2221 dbSNP
rs899504803 2222 dbSNP
rs1044909986 2229 dbSNP
rs1411410383 2232 dbSNP
rs1357308035 2243 dbSNP
rs545191229 2244 dbSNP
rs1038986531 2246 dbSNP
rs1011198435 2252 dbSNP
rs548104353 2261 dbSNP
rs887246659 2261 dbSNP
rs893716727 2263 dbSNP
rs538009347 2272 dbSNP
rs1204536277 2280 dbSNP
rs934963804 2283 dbSNP
rs748094126 2284 dbSNP
rs780052569 2285 dbSNP
rs1163660822 2288 dbSNP
rs991624367 2291 dbSNP
rs1459844704 2299 dbSNP
rs182944891 2300 dbSNP
rs942470633 2301 dbSNP
rs910671710 2305 dbSNP
rs979736295 2306 dbSNP
rs1300153393 2307 dbSNP
rs986312733 2309 dbSNP
rs1245417807 2311 dbSNP
rs1315753438 2312 dbSNP
rs952345519 2312 dbSNP
rs78282406 2316 dbSNP
rs1230329639 2317 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuGAUAUGUUGGAGGAUGGAGu 5'
            :| ||||:    :|||||| 
Target 5' caUUUUACAG----UUACCUCa 3'
3 - 20
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760597. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_C ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000274811.4 | 3UTR | CACAUUUUACAGUUACCUCAUUUUUCCCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000274811.4 | 3UTR | CACAUUUUACAGUUACCUCAUUUUUCCCAUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000274811.4 | 3UTR | UUCCUUGCACAUUUUACAGUUACCUCAUUUUUCCCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.243 0.05 0.243 0.05 49 Click to see details
CHOL 0.567 0.06 0.683 0.02 9 Click to see details
PRAD 0.2 0.08 0.125 0.19 50 Click to see details
HNSC -0.211 0.09 -0.131 0.2 42 Click to see details
PAAD -0.815 0.09 -0.400 0.3 4 Click to see details
UCEC 0.292 0.11 0.247 0.15 19 Click to see details
KIRC -0.144 0.12 -0.183 0.07 68 Click to see details
KICH 0.131 0.27 0.155 0.23 25 Click to see details
STAD -0.103 0.29 -0.141 0.22 32 Click to see details
BLCA 0.125 0.31 -0.003 0.5 18 Click to see details
LUAD -0.132 0.34 0.007 0.49 12 Click to see details
COAD 0.13 0.38 0.143 0.37 8 Click to see details
ESCA -0.095 0.39 -0.200 0.28 11 Click to see details
PCPG 0.281 0.41 0.500 0.33 3 Click to see details
CESC 0.272 0.41 0.500 0.33 3 Click to see details
BRCA -0.015 0.45 0.021 0.42 84 Click to see details
LUSC -0.018 0.46 -0.035 0.42 38 Click to see details
THCA -0.012 0.46 -0.017 0.45 59 Click to see details
KIRP -0.009 0.48 0.029 0.44 32 Click to see details
KIRP -0.009 0.48 0.029 0.44 32 Click to see details
KIRP -0.009 0.48 0.029 0.44 32 Click to see details
581 hsa-let-7e-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT002081 HMGA2 high mobility group AT-hook 2 5 5
MIRT003932 EIF3J eukaryotic translation initiation factor 3 subunit J 2 1
MIRT004469 SMC1A structural maintenance of chromosomes 1A 4 7
MIRT005718 WNT1 Wnt family member 1 4 1
MIRT006122 CCND1 cyclin D1 5 4
MIRT006404 MPL MPL proto-oncogene, thrombopoietin receptor 1 1
MIRT032098 RABGAP1L RAB GTPase activating protein 1 like 1 1
MIRT032099 DAD1 defender against cell death 1 1 1
MIRT032100 MYCN MYCN proto-oncogene, bHLH transcription factor 4 2
MIRT051413 WDR67 TBC1 domain family member 31 1 1
MIRT051414 FAM219B family with sequence similarity 219 member B 1 1
MIRT051415 C11orf91 chromosome 11 open reading frame 91 1 1
MIRT051416 CENPP centromere protein P 1 1
MIRT051417 TMEM107 transmembrane protein 107 1 1
MIRT051418 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT051419 DAAM1 dishevelled associated activator of morphogenesis 1 1 1
MIRT051420 DGCR8 DGCR8, microprocessor complex subunit 1 1
MIRT051421 RAP1A RAP1A, member of RAS oncogene family 1 1
MIRT051422 RPA1 replication protein A1 1 1
MIRT051423 SKIV2L Ski2 like RNA helicase 1 1
MIRT051424 AGO1 argonaute 1, RISC catalytic component 4 2
MIRT051425 RPS27 ribosomal protein S27 1 1
MIRT051426 ARNT2 aryl hydrocarbon receptor nuclear translocator 2 1 1
MIRT051427 GPM6B glycoprotein M6B 1 1
MIRT051428 TTLL12 tubulin tyrosine ligase like 12 1 1
MIRT051429 HIST2H2BF histone cluster 2 H2B family member f 1 1
MIRT051430 CELF2 CUGBP Elav-like family member 2 1 1
MIRT051431 AGO2 argonaute 2, RISC catalytic component 1 1
MIRT051432 VPS13D vacuolar protein sorting 13 homolog D 1 1
MIRT051433 RPL10 ribosomal protein L10 1 1
MIRT051434 SPCS2 signal peptidase complex subunit 2 1 1
MIRT051435 DCAF8 DDB1 and CUL4 associated factor 8 1 1
MIRT051436 CTC1 CST telomere replication complex component 1 1 1
MIRT051437 NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit 1 1
MIRT051438 PHF3 PHD finger protein 3 1 1
MIRT051439 TUBA1B tubulin alpha 1b 1 1
MIRT051440 SHANK1 SH3 and multiple ankyrin repeat domains 1 1 1
MIRT051441 SKA2 spindle and kinetochore associated complex subunit 2 1 1
MIRT051442 SPTBN1 spectrin beta, non-erythrocytic 1 1 1
MIRT051443 ND2 MTND2 1 1
MIRT051444 MED13L mediator complex subunit 13 like 1 1
MIRT051445 RCOR3 REST corepressor 3 1 1
MIRT051446 MACF1 microtubule-actin crosslinking factor 1 1 1
MIRT051447 RDX radixin 2 5
MIRT051448 PCBP2 poly(rC) binding protein 2 1 1
MIRT051449 UBAP2L ubiquitin associated protein 2 like 1 1
MIRT051450 CDCA3 cell division cycle associated 3 1 1
MIRT051451 CABLES1 Cdk5 and Abl enzyme substrate 1 1 1
MIRT051452 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 1 1
MIRT051453 C12orf49 chromosome 12 open reading frame 49 1 1
MIRT051454 TIMP3 TIMP metallopeptidase inhibitor 3 1 1
MIRT051455 WBSCR16 RCC1 like 1 1
MIRT051456 SLC2A11 solute carrier family 2 member 11 1 1
MIRT051457 NF1 neurofibromin 1 1 1
MIRT051458 LRRC8A leucine rich repeat containing 8 VRAC subunit A 1 1
MIRT051459 RUNX1T1 RUNX1 translocation partner 1 1 1
MIRT051460 DTNB dystrobrevin beta 1 1
MIRT051461 SCMH1 Scm polycomb group protein homolog 1 1 1
MIRT051462 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma 1 1
MIRT051463 RHBDD2 rhomboid domain containing 2 1 1
MIRT051464 ND5 NADH dehydrogenase, subunit 5 (complex I) 1 1
MIRT051465 NDST1 N-deacetylase and N-sulfotransferase 1 1 1
MIRT051466 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 5
MIRT051467 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT051468 BAHCC1 BAH domain and coiled-coil containing 1 1 1
MIRT051469 CARM1 coactivator associated arginine methyltransferase 1 1 1
MIRT051470 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 1 1
MIRT051471 ND3 NADH dehydrogenase, subunit 3 (complex I) 1 1
MIRT051472 PIGS phosphatidylinositol glycan anchor biosynthesis class S 1 1
MIRT051473 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 1 1
MIRT051474 RPN2 ribophorin II 1 1
MIRT051475 RPL12 ribosomal protein L12 1 1
MIRT051476 NME4 NME/NM23 nucleoside diphosphate kinase 4 1 1
MIRT051477 IVD isovaleryl-CoA dehydrogenase 1 1
MIRT051478 JAZF1 JAZF zinc finger 1 1 1
MIRT051479 ND4 NADH dehydrogenase, subunit 4 (complex I) 1 1
MIRT051480 VARS valyl-tRNA synthetase 1 1
MIRT051481 RNF26 ring finger protein 26 1 1
MIRT051482 LHFPL2 LHFPL tetraspan subfamily member 2 1 1
MIRT051483 ARCN1 archain 1 1 1
MIRT051484 COX1 cytochrome c oxidase subunit I 1 1
MIRT051485 SLC12A4 solute carrier family 12 member 4 1 1
MIRT051486 AEBP2 AE binding protein 2 1 1
MIRT051487 PET112 glutamyl-tRNA amidotransferase subunit B 1 1
MIRT051488 UROC1 urocanate hydratase 1 1 1
MIRT051489 IGF1R insulin like growth factor 1 receptor 5 10
MIRT051490 BSDC1 BSD domain containing 1 1 1
MIRT051491 PTK2 protein tyrosine kinase 2 1 1
MIRT051492 CDC5L cell division cycle 5 like 1 1
MIRT051493 EN2 engrailed homeobox 2 1 1
MIRT051494 SSB Sjogren syndrome antigen B 1 1
MIRT051495 SLCO3A1 solute carrier organic anion transporter family member 3A1 1 1
MIRT051496 RRAGC Ras related GTP binding C 1 1
MIRT051497 ZNF236 zinc finger protein 236 1 1
MIRT051498 SEMA4B semaphorin 4B 1 1
MIRT051499 SERBP1 SERPINE1 mRNA binding protein 1 1 1
MIRT051500 XIAP X-linked inhibitor of apoptosis 1 1
MIRT051501 GTF2I general transcription factor IIi 1 1
MIRT051502 JMJD1C jumonji domain containing 1C 1 1
MIRT051503 OTUD5 OTU deubiquitinase 5 1 1
MIRT051504 NOLC1 nucleolar and coiled-body phosphoprotein 1 1 1
MIRT051505 PPIG peptidylprolyl isomerase G 1 1
MIRT051506 PSMD2 proteasome 26S subunit, non-ATPase 2 1 1
MIRT051507 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 1 1
MIRT051508 VAMP2 vesicle associated membrane protein 2 1 1
MIRT051509 LSR lipolysis stimulated lipoprotein receptor 1 1
MIRT051510 KIAA0355 KIAA0355 1 1
MIRT051511 RPSA ribosomal protein SA 1 1
MIRT051512 DCAF6 DDB1 and CUL4 associated factor 6 1 1
MIRT051513 UHRF1BP1 UHRF1 binding protein 1 1 1
MIRT051514 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 1 1
MIRT051515 PIGP phosphatidylinositol glycan anchor biosynthesis class P 1 1
MIRT051516 LMLN leishmanolysin like peptidase 1 1
MIRT051517 PPP2R1A protein phosphatase 2 scaffold subunit Aalpha 1 1
MIRT051518 HIPK1 homeodomain interacting protein kinase 1 1 1
MIRT051519 SERF2 small EDRK-rich factor 2 1 1
MIRT051520 RBM4 RNA binding motif protein 4 1 1
MIRT051521 RBM14 RNA binding motif protein 14 1 1
MIRT051522 HMGB1 high mobility group box 1 1 1
MIRT051523 GMPS guanine monophosphate synthase 1 1
MIRT051524 DIAPH1 diaphanous related formin 1 1 1
MIRT051525 STAM signal transducing adaptor molecule 1 1
MIRT051526 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 1 1
MIRT051527 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 1 1
MIRT051528 MARCH5 membrane associated ring-CH-type finger 5 1 1
MIRT051529 SQLE squalene epoxidase 1 1
MIRT051530 TIMM50 translocase of inner mitochondrial membrane 50 1 1
MIRT051531 NDUFA3 NADH:ubiquinone oxidoreductase subunit A3 1 1
MIRT051532 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 1 1
MIRT051533 NRSN2 neurensin 2 1 1
MIRT051534 SALL1 spalt like transcription factor 1 1 1
MIRT051535 COX3 cytochrome c oxidase III 1 1
MIRT051536 RABL6 RAB, member RAS oncogene family like 6 1 1
MIRT051537 SUPT4H1 SPT4 homolog, DSIF elongation factor subunit 1 1
MIRT051538 PACS2 phosphofurin acidic cluster sorting protein 2 1 1
MIRT051539 MTMR14 myotubularin related protein 14 1 1
MIRT051540 LUZP1 leucine zipper protein 1 1 1
MIRT051541 PFAS phosphoribosylformylglycinamidine synthase 1 1
MIRT051542 SUZ12 SUZ12 polycomb repressive complex 2 subunit 1 1
MIRT051543 PAPD4 poly(A) RNA polymerase D4, non-canonical 1 1
MIRT051544 QSOX1 quiescin sulfhydryl oxidase 1 1 1
MIRT051545 SPATA13 spermatogenesis associated 13 1 1
MIRT051546 DHX57 DExH-box helicase 57 1 1
MIRT051547 KATNB1 katanin regulatory subunit B1 1 1
MIRT051548 COL6A1 collagen type VI alpha 1 chain 1 1
MIRT051549 DHX15 DEAH-box helicase 15 1 1
MIRT051550 MTCH2 mitochondrial carrier 2 1 1
MIRT051551 KIAA0100 KIAA0100 1 1
MIRT051552 SUGP2 SURP and G-patch domain containing 2 1 1
MIRT051553 NCLN nicalin 1 1
MIRT051554 ATXN2L ataxin 2 like 1 1
MIRT051555 CHD9 chromodomain helicase DNA binding protein 9 1 1
MIRT051556 PES1 pescadillo ribosomal biogenesis factor 1 1 1
MIRT051557 NUP155 nucleoporin 155 2 7
MIRT051558 GNG5 G protein subunit gamma 5 2 3
MIRT051559 ARHGAP19 Rho GTPase activating protein 19 1 1
MIRT051560 MTFR1 mitochondrial fission regulator 1 1 1
MIRT051561 IRS2 insulin receptor substrate 2 2 1
MIRT051562 IRS4 insulin receptor substrate 4 1 1
MIRT051563 PPP1R10 protein phosphatase 1 regulatory subunit 10 1 1
MIRT051564 ZNF284 zinc finger protein 284 1 1
MIRT051565 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 1 1
MIRT051566 SCD stearoyl-CoA desaturase 1 1
MIRT051567 FDPS farnesyl diphosphate synthase 1 1
MIRT051568 KRBOX4 KRAB box domain containing 4 1 1
MIRT051569 BRI3 brain protein I3 1 1
MIRT051570 CHD7 chromodomain helicase DNA binding protein 7 1 1
MIRT051571 PYCR1 pyrroline-5-carboxylate reductase 1 1 1
MIRT051572 SMAP2 small ArfGAP2 1 1
MIRT051573 WDFY3 WD repeat and FYVE domain containing 3 1 1
MIRT051574 CRK CRK proto-oncogene, adaptor protein 1 1
MIRT051575 SRSF2 serine and arginine rich splicing factor 2 1 1
MIRT051576 PGD phosphogluconate dehydrogenase 1 1
MIRT051577 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT051578 ZNF652 zinc finger protein 652 1 1
MIRT051579 PSMA6 proteasome subunit alpha 6 1 1
MIRT051580 SLC38A2 solute carrier family 38 member 2 1 1
MIRT051581 LRRC41 leucine rich repeat containing 41 1 1
MIRT051582 RANBP2 RAN binding protein 2 1 1
MIRT051583 SVIL supervillin 1 1
MIRT051584 CCNG1 cyclin G1 1 1
MIRT051585 ZNF256 zinc finger protein 256 1 1
MIRT051586 COPG1 coatomer protein complex subunit gamma 1 1 1
MIRT051587 PDCD11 programmed cell death 11 1 1
MIRT051588 CNBP CCHC-type zinc finger nucleic acid binding protein 1 1
MIRT051589 USP37 ubiquitin specific peptidase 37 1 1
MIRT051590 UBE2V2 ubiquitin conjugating enzyme E2 V2 1 1
MIRT051591 UBE2H ubiquitin conjugating enzyme E2 H 1 1
MIRT051592 LMNA lamin A/C 1 1
MIRT051593 STAT3 signal transducer and activator of transcription 3 1 1
MIRT051594 TRPV1 transient receptor potential cation channel subfamily V member 1 1 1
MIRT051595 MATR3 matrin 3 1 1
MIRT051596 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 1 1
MIRT051597 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 1 1
MIRT051598 WDR48 WD repeat domain 48 1 1
MIRT051599 RBM8A RNA binding motif protein 8A 1 1
MIRT051600 SCYL1 SCY1 like pseudokinase 1 1 1
MIRT051601 C19orf48 chromosome 19 open reading frame 48 1 1
MIRT051602 FOXD4L6 forkhead box D4 like 6 1 1
MIRT051603 PIGN phosphatidylinositol glycan anchor biosynthesis class N 1 1
MIRT051604 SPCS3 signal peptidase complex subunit 3 1 1
MIRT051605 TNFAIP1 TNF alpha induced protein 1 1 1
MIRT051606 MS4A10 membrane spanning 4-domains A10 1 1
MIRT051607 MSMO1 methylsterol monooxygenase 1 1 1
MIRT051608 ARID1A AT-rich interaction domain 1A 1 1
MIRT051609 NCKIPSD NCK interacting protein with SH3 domain 2 5
MIRT051610 NCBP1 nuclear cap binding protein subunit 1 1 1
MIRT051611 COX16 COX16, cytochrome c oxidase assembly homolog 1 1
MIRT051612 NUDT8 nudix hydrolase 8 1 1
MIRT051613 PHKA1 phosphorylase kinase regulatory subunit alpha 1 1 1
MIRT051614 TXNRD1 thioredoxin reductase 1 1 1
MIRT051615 ELMSAN1 ELM2 and Myb/SANT domain containing 1 1 1
MIRT051616 CTSA cathepsin A 1 1
MIRT051617 PRRC2A proline rich coiled-coil 2A 1 1
MIRT051618 SPAG9 sperm associated antigen 9 1 1
MIRT051619 AGMAT agmatinase 1 1
MIRT051620 NCKAP5L NCK associated protein 5 like 1 1
MIRT051621 ZFP62 ZFP62 zinc finger protein 1 1
MIRT051622 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 1 1
MIRT051623 POLR3D RNA polymerase III subunit D 2 3
MIRT051624 PRPF8 pre-mRNA processing factor 8 1 1
MIRT051625 ATP6 ATP synthase F0 subunit 6 1 1
MIRT051626 ZFAND5 zinc finger AN1-type containing 5 1 1
MIRT051627 BAZ1B bromodomain adjacent to zinc finger domain 1B 1 1
MIRT051628 KATNAL1 katanin catalytic subunit A1 like 1 1 1
MIRT051629 BMP2K BMP2 inducible kinase 1 1
MIRT051630 SPN sialophorin 1 1
MIRT051631 PA2G4 proliferation-associated 2G4 1 1
MIRT051632 RPRD2 regulation of nuclear pre-mRNA domain containing 2 1 1
MIRT051633 TUBB4B tubulin beta 4B class IVb 1 1
MIRT051634 TRRAP transformation/transcription domain associated protein 1 1
MIRT051635 SLCO4A1 solute carrier organic anion transporter family member 4A1 1 1
MIRT051636 CCRN4L nocturnin 1 1
MIRT051637 USE1 unconventional SNARE in the ER 1 1 1
MIRT051638 STARD7 StAR related lipid transfer domain containing 7 1 1
MIRT051639 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 3
MIRT051640 CLTC clathrin heavy chain 1 1
MIRT051641 TERF1 telomeric repeat binding factor 1 1 1
MIRT051642 PAX3 paired box 3 1 1
MIRT051643 CCDC97 coiled-coil domain containing 97 1 1
MIRT051644 HLA-C major histocompatibility complex, class I, C 1 1
MIRT051645 GTPBP8 GTP binding protein 8 (putative) 1 1
MIRT051646 VGLL4 vestigial like family member 4 1 1
MIRT051647 ANKRD40 ankyrin repeat domain 40 1 1
MIRT051648 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 1 1
MIRT051649 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT051650 DSP desmoplakin 1 1
MIRT051651 UBN2 ubinuclein 2 1 1
MIRT051652 ZNF805 zinc finger protein 805 1 1
MIRT051653 RBBP4 RB binding protein 4, chromatin remodeling factor 1 1
MIRT051654 OCLN occludin 1 1
MIRT051655 CBX5 chromobox 5 2 3
MIRT051656 AMPD2 adenosine monophosphate deaminase 2 1 1
MIRT051657 MKI67 marker of proliferation Ki-67 1 1
MIRT051658 SUB1 SUB1 homolog, transcriptional regulator 1 1
MIRT051659 RSL1D1 ribosomal L1 domain containing 1 1 1
MIRT051660 SEC23IP SEC23 interacting protein 1 1
MIRT051661 RNMT RNA guanine-7 methyltransferase 1 1
MIRT051662 SGSM3 small G protein signaling modulator 3 1 1
MIRT051663 ZFP3 ZFP3 zinc finger protein 1 1
MIRT051664 GLUL glutamate-ammonia ligase 1 1
MIRT051665 POLD1 DNA polymerase delta 1, catalytic subunit 1 1
MIRT051666 WDR4 WD repeat domain 4 1 1
MIRT051667 PPP1R2 protein phosphatase 1 regulatory inhibitor subunit 2 1 1
MIRT051668 RAI2 retinoic acid induced 2 1 1
MIRT051669 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 1 1
MIRT051670 UTP15 UTP15, small subunit processome component 1 1
MIRT051671 THADA THADA, armadillo repeat containing 1 1
MIRT051672 ZNF451 zinc finger protein 451 1 1
MIRT051673 CREBBP CREB binding protein 1 1
MIRT051674 ZNF770 zinc finger protein 770 1 1
MIRT051675 CLDN4 claudin 4 1 1
MIRT051676 ZKSCAN7 zinc finger with KRAB and SCAN domains 7 1 1
MIRT051677 NICN1 nicolin 1 1 1
MIRT051678 RPLP2 ribosomal protein lateral stalk subunit P2 1 1
MIRT051679 DCBLD2 discoidin, CUB and LCCL domain containing 2 1 1
MIRT051680 IRGQ immunity related GTPase Q 1 1
MIRT051681 CA5B carbonic anhydrase 5B 1 1
MIRT051682 COX14 COX14, cytochrome c oxidase assembly factor 1 1
MIRT051683 PSD3 pleckstrin and Sec7 domain containing 3 1 1
MIRT051684 RPL27A ribosomal protein L27a 1 1
MIRT051685 CWC15 CWC15 spliceosome associated protein homolog 1 1
MIRT051686 NT5DC2 5'-nucleotidase domain containing 2 1 1
MIRT051687 OR7D2 olfactory receptor family 7 subfamily D member 2 1 1
MIRT051688 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 1 1
MIRT051689 NUDT15 nudix hydrolase 15 1 1
MIRT051690 CDH18 cadherin 18 1 1
MIRT051691 FAM160B1 family with sequence similarity 160 member B1 1 1
MIRT051692 DZIP1 DAZ interacting zinc finger protein 1 1 1
MIRT051693 TDRD7 tudor domain containing 7 1 1
MIRT051694 TCF4 transcription factor 4 1 1
MIRT051695 ENSA endosulfine alpha 1 1
MIRT051696 GTF3C1 general transcription factor IIIC subunit 1 1 1
MIRT051697 TNFRSF1A TNF receptor superfamily member 1A 1 1
MIRT051698 CCDC113 coiled-coil domain containing 113 1 1
MIRT051699 MYO9B myosin IXB 1 1
MIRT051700 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 1 1
MIRT051701 PRAMEF13 PRAME family member 13 1 1
MIRT051702 PMPCA peptidase, mitochondrial processing alpha subunit 2 5
MIRT051703 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT051704 RACGAP1 Rac GTPase activating protein 1 1 1
MIRT051705 CCDC106 coiled-coil domain containing 106 1 1
MIRT051706 CYP2B6 cytochrome P450 family 2 subfamily B member 6 1 1
MIRT051707 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 3
MIRT051708 PSME4 proteasome activator subunit 4 1 1
MIRT051709 SETD1A SET domain containing 1A 1 1
MIRT054561 MMP9 matrix metallopeptidase 9 3 1
MIRT054579 IGF1 insulin like growth factor 1 3 1
MIRT063195 ADIPOR2 adiponectin receptor 2 2 2
MIRT065687 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT067399 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 2
MIRT068154 TXLNA taxilin alpha 2 2
MIRT068528 NHLRC3 NHL repeat containing 3 2 6
MIRT068789 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT073006 ARID3B AT-rich interaction domain 3B 2 6
MIRT076223 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 6
MIRT077616 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT080398 ONECUT2 one cut homeobox 2 2 2
MIRT083300 ZCCHC3 zinc finger CCHC-type containing 3 2 2
MIRT084976 BACH1 BTB domain and CNC homolog 1 2 2
MIRT094160 PCGF3 polycomb group ring finger 3 2 6
MIRT094460 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT095766 GRPEL2 GrpE like 2, mitochondrial 2 10
MIRT100094 ABT1 activator of basal transcription 1 2 8
MIRT112242 MDM4 MDM4, p53 regulator 2 4
MIRT118586 STK4 serine/threonine kinase 4 2 2
MIRT120921 PDE12 phosphodiesterase 12 2 8
MIRT123317 CALU calumenin 2 2
MIRT152272 TNFSF9 TNF superfamily member 9 2 2
MIRT153847 NCOA3 nuclear receptor coactivator 3 2 2
MIRT168583 HMGA1 high mobility group AT-hook 1 2 4
MIRT180603 CRY2 cryptochrome circadian clock 2 2 2
MIRT187717 SUOX sulfite oxidase 2 2
MIRT191404 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT193101 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT215720 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT218815 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT240330 UBXN2B UBX domain protein 2B 2 2
MIRT243473 TRIM71 tripartite motif containing 71 2 2
MIRT244069 EDN1 endothelin 1 2 2
MIRT252330 SALL3 spalt like transcription factor 3 2 2
MIRT255314 CDV3 CDV3 homolog 2 2
MIRT259277 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT259479 TXLNG taxilin gamma 2 2
MIRT260707 CLDN12 claudin 12 2 6
MIRT264693 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT266212 PEX11B peroxisomal biogenesis factor 11 beta 2 2
MIRT266626 CHTOP chromatin target of PRMT1 2 2
MIRT268839 C1ORF21 chromosome 1 open reading frame 21 2 2
MIRT294446 ZNF264 zinc finger protein 264 2 2
MIRT297013 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT297443 SLC20A1 solute carrier family 20 member 1 2 4
MIRT300037 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT300893 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT303320 MXD1 MAX dimerization protein 1 2 2
MIRT309846 NAT8L N-acetyltransferase 8 like 2 2
MIRT322428 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT324731 ACER2 alkaline ceramidase 2 2 2
MIRT402057 ATP6V1F ATPase H+ transporting V1 subunit F 2 4
MIRT437395 LIN28A lin-28 homolog A 4 1
MIRT437396 AURKB aurora kinase B 4 1
MIRT437435 EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 2 1
MIRT438632 TNFRSF10B TNF receptor superfamily member 10b 2 1
MIRT439135 MYC MYC proto-oncogene, bHLH transcription factor 0 1
MIRT442020 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT445658 ATP6V1G1 ATPase H+ transporting V1 subunit G1 2 6
MIRT447136 KIF27 kinesin family member 27 2 2
MIRT448259 ZNF774 zinc finger protein 774 2 2
MIRT449005 ANKRD46 ankyrin repeat domain 46 2 2
MIRT449953 FMNL3 formin like 3 2 2
MIRT451155 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451624 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451693 C1RL complement C1r subcomponent like 2 2
MIRT452092 NUCB2 nucleobindin 2 2 2
MIRT452431 QDPR quinoid dihydropteridine reductase 2 2
MIRT452943 DISC1 disrupted in schizophrenia 1 2 2
MIRT453401 RHD Rh blood group D antigen 2 6
MIRT454164 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT454280 FXN frataxin 2 2
MIRT454539 RABL2A RAB, member of RAS oncogene family like 2A 2 2
MIRT454854 ACOT9 acyl-CoA thioesterase 9 2 4
MIRT455676 GLO1 glyoxalase I 2 2
MIRT457248 RABL2B RAB, member of RAS oncogene family like 2B 2 2
MIRT457677 ZNF587 zinc finger protein 587 2 2
MIRT457887 THEM6 thioesterase superfamily member 6 2 4
MIRT458016 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458279 FUT10 fucosyltransferase 10 2 2
MIRT459736 RRM1 ribonucleotide reductase catalytic subunit M1 2 2
MIRT460453 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460500 FAM105A family with sequence similarity 105 member A 2 6
MIRT460938 NOA1 nitric oxide associated 1 2 4
MIRT461092 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461169 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461364 COL8A1 collagen type VIII alpha 1 chain 2 2
MIRT462382 YAE1D1 Yae1 domain containing 1 2 2
MIRT462780 ZNF8 zinc finger protein 8 2 2
MIRT463420 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463662 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT464265 VCL vinculin 2 2
MIRT465122 TSC22D2 TSC22 domain family member 2 2 4
MIRT466184 TMED5 transmembrane p24 trafficking protein 5 2 4
MIRT466722 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT469102 RNF144B ring finger protein 144B 2 2
MIRT469714 RAB40C RAB40C, member RAS oncogene family 2 2
MIRT470425 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT470679 POLR2D RNA polymerase II subunit D 2 4
MIRT470861 PLXND1 plexin D1 2 2
MIRT471271 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471957 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT472672 NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit 2 2
MIRT472739 MTUS1 microtubule associated scaffold protein 1 2 6
MIRT473134 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT473234 SMCR7L mitochondrial elongation factor 1 1 4
MIRT473828 MAP2K7 mitogen-activated protein kinase kinase 7 2 2
MIRT473940 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT474022 LRRC20 leucine rich repeat containing 20 2 2
MIRT474502 KLHDC8B kelch domain containing 8B 2 2
MIRT474766 KIAA0930 KIAA0930 2 2
MIRT474905 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT475331 IFNLR1 interferon lambda receptor 1 2 2
MIRT475379 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475733 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT476548 GABPB1 GA binding protein transcription factor beta subunit 1 2 4
MIRT476973 FAM83G family with sequence similarity 83 member G 2 4
MIRT477534 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT477682 EFHD2 EF-hand domain family member D2 2 2
MIRT481201 ATXN7L3B ataxin 7 like 3B 2 4
MIRT481241 ATXN7L3 ataxin 7 like 3 2 2
MIRT481363 ATG9A autophagy related 9A 2 2
MIRT481388 ATG12 autophagy related 12 2 2
MIRT481652 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT481851 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT482184 AHR aryl hydrocarbon receptor 2 2
MIRT482220 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT485296 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT486659 ZNF28 zinc finger protein 28 2 2
MIRT489413 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491867 ZBTB5 zinc finger and BTB domain containing 5 2 8
MIRT492216 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492626 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT493323 LIMD2 LIM domain containing 2 2 2
MIRT493901 FAM43A family with sequence similarity 43 member A 2 4
MIRT494263 CEP120 centrosomal protein 120 2 2
MIRT494687 ARID3A AT-rich interaction domain 3A 2 2
MIRT495968 TBC1D19 TBC1 domain family member 19 2 2
MIRT496111 SNX17 sorting nexin 17 2 2
MIRT497875 SLC12A7 solute carrier family 12 member 7 2 2
MIRT498122 PLEKHO1 pleckstrin homology domain containing O1 2 4
MIRT499405 PLCG2 phospholipase C gamma 2 2 4
MIRT499493 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 2 2
MIRT499653 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 2 2
MIRT499942 MFSD8 major facilitator superfamily domain containing 8 2 2
MIRT499997 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT500819 THBS1 thrombospondin 1 2 3
MIRT500902 STRN striatin 2 4
MIRT501118 SLC5A6 solute carrier family 5 member 6 2 4
MIRT501173 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501202 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT501241 SEMA4C semaphorin 4C 2 6
MIRT501328 RNFT1 ring finger protein, transmembrane 1 2 2
MIRT501355 RNF44 ring finger protein 44 2 4
MIRT501387 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT501441 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT501759 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT501943 MBD2 methyl-CpG binding domain protein 2 2 8
MIRT502106 KPNA5 karyopherin subunit alpha 5 2 8
MIRT502130 KMT2D lysine methyltransferase 2D 2 4
MIRT502784 CEP135 centrosomal protein 135 2 2
MIRT502845 CELF1 CUGBP Elav-like family member 1 2 2
MIRT504789 C12orf4 chromosome 12 open reading frame 4 2 2
MIRT505017 ZNF644 zinc finger protein 644 2 2
MIRT506942 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507252 FIGN fidgetin, microtubule severing factor 2 8
MIRT507694 COIL coilin 2 6
MIRT508401 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508665 DIABLO diablo IAP-binding mitochondrial protein 2 4
MIRT508932 AK4 adenylate kinase 4 2 4
MIRT510395 ZNF566 zinc finger protein 566 2 6
MIRT510518 YOD1 YOD1 deubiquitinase 2 6
MIRT511386 IKZF3 IKAROS family zinc finger 3 2 4
MIRT512745 CD59 CD59 molecule (CD59 blood group) 2 4
MIRT515954 C9orf156 tRNA methyltransferase O 2 2
MIRT516083 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT523619 FZD9 frizzled class receptor 9 2 4
MIRT523733 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523990 DVL3 dishevelled segment polarity protein 3 2 2
MIRT524113 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT525727 SOD2 superoxide dismutase 2 2 2
MIRT527763 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT529727 OPRL1 opioid related nociceptin receptor 1 2 2
MIRT533187 WASL Wiskott-Aldrich syndrome like 2 6
MIRT536378 LEFTY1 left-right determination factor 1 2 2
MIRT543785 RBM12B RNA binding motif protein 12B 2 4
MIRT543868 SLC16A9 solute carrier family 16 member 9 2 2
MIRT545387 PM20D2 peptidase M20 domain containing 2 2 2
MIRT545890 ZNF200 zinc finger protein 200 2 4
MIRT546334 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT547373 MSI2 musashi RNA binding protein 2 2 2
MIRT547579 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548264 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT548351 EPHA4 EPH receptor A4 2 2
MIRT548534 DUSP1 dual specificity phosphatase 1 2 2
MIRT548560 DNAL1 dynein axonemal light chain 1 2 2
MIRT548779 COLEC12 collectin subfamily member 12 2 2
MIRT548978 CCNT2 cyclin T2 2 2
MIRT549208 BEND4 BEN domain containing 4 2 4
MIRT549763 ZNF611 zinc finger protein 611 2 6
MIRT549799 KIAA0391 KIAA0391 2 2
MIRT549847 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 2
MIRT550898 ACTA1 actin, alpha 1, skeletal muscle 2 2
MIRT551283 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551318 GSG2 histone H3 associated protein kinase 2 6
MIRT551932 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552003 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT552410 ZNF460 zinc finger protein 460 2 4
MIRT553013 USP38 ubiquitin specific peptidase 38 2 2
MIRT555550 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT555711 PDZD8 PDZ domain containing 8 2 2
MIRT557372 HAND1 heart and neural crest derivatives expressed 1 2 2
MIRT557960 FAM222B family with sequence similarity 222 member B 2 2
MIRT559087 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT559497 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT561772 PEG10 paternally expressed 10 2 2
MIRT564402 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT565443 SURF4 surfeit 4 2 2
MIRT566518 PARP16 poly(ADP-ribose) polymerase family member 16 2 2
MIRT567715 E2F6 E2F transcription factor 6 2 2
MIRT568655 ABHD17C abhydrolase domain containing 17C 2 2
MIRT569498 THYN1 thymocyte nuclear protein 1 2 2
MIRT573820 TGOLN2 trans-golgi network protein 2 2 2
MIRT574363 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT574750 GOLGA4 golgin A4 2 2
MIRT574788 FAM104A family with sequence similarity 104 member A 2 2
MIRT576089 Poteg POTE ankyrin domain family, member G 2 2
MIRT576812 Thbs1 thrombospondin 1 2 3
MIRT616370 RWDD1 RWD domain containing 1 2 2
MIRT617851 FMO4 flavin containing monooxygenase 4 2 2
MIRT642394 ZNF556 zinc finger protein 556 2 2
MIRT680519 PRIM2 DNA primase subunit 2 2 2
MIRT680547 ZNF584 zinc finger protein 584 2 2
MIRT680800 ZNF578 zinc finger protein 578 2 2
MIRT680838 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT681141 INTS7 integrator complex subunit 7 2 2
MIRT681271 RFC2 replication factor C subunit 2 2 2
MIRT681323 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT681359 BRI3BP BRI3 binding protein 2 2
MIRT681506 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681536 ZNF738 zinc finger protein 738 2 2
MIRT681658 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT681738 RAB19 RAB19, member RAS oncogene family 2 4
MIRT681797 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681869 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT681941 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682102 ITGA3 integrin subunit alpha 3 2 4
MIRT682181 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682238 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682384 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682444 MTX3 metaxin 3 2 2
MIRT682604 CPA4 carboxypeptidase A4 2 2
MIRT682640 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT689327 FPR1 formyl peptide receptor 1 2 2
MIRT689730 ATXN2 ataxin 2 2 2
MIRT691036 ZNF799 zinc finger protein 799 2 2
MIRT691935 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT694884 ZNF417 zinc finger protein 417 2 2
MIRT695255 ZNF443 zinc finger protein 443 2 2
MIRT695413 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT700589 PRSS22 protease, serine 22 2 2
MIRT701428 NHLRC2 NHL repeat containing 2 2 2
MIRT702484 KIAA1328 KIAA1328 2 2
MIRT702715 IPO9 importin 9 2 2
MIRT704028 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT704418 CTPS1 CTP synthase 1 2 2
MIRT705750 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT712373 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT713520 PAFAH2 platelet activating factor acetylhydrolase 2 2 2
MIRT731263 FASLG Fas ligand 3 1
MIRT732697 Ccr7 chemokine (C-C motif) receptor 7 2 0
MIRT732700 Snhg12 small nucleolar RNA host gene 12 2 0
MIRT734626 SYT7 synaptotagmin 7 1 0
MIRT755829 UBQLN4 ubiquilin 4 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
let-7e Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
let-7e Hydroxamic acid HDACi LAQ824 NULL NULL Microarray breast cancer cell line SKBr3 16452179 2006 down-regulated
let-7e Doxorubicin approved 31703 Microarray ovarian cancer 19237188 2009 up-regulated
let-7e 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
let-7e Etoposide approved 36462 Microarray Normal human fibroblasts (AG01522) 19633716 2009 up-regulated
let-7e Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
let-7e 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 down-regulated
let-7e Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
let-7e Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 up-regulated
let-7e Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 down-regulated
let-7e 17beta-estradiol (E2) approved 5757 Microarray rat breast 17700064 2007 down-regulated
let-7e Marine fungal metabolite 1386A NULL NULL Microarray MCF-7 breast cancer cells. 22159329 2012 down-regulated
let-7e Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 down-regulated
let-7e 5-aminoimidazole-4-carboxamide-1-β-d-ribofuranoside (AICAR) NULL 16078949 Microarray hepatocytes 23107762 2013 up-regulated
let-7e Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-let-7e Doxorubicin 31703 NSC123127 approved resistant High Ovarian Cancer cell line (OV19, TOV21G, TOV112D, FUOV1, C13, OV2008, A2780CP, A2780S, IGROV1, T8, OVCAR5, IMCC3, A2008, OVCAR3, SKOV3, IOSER)
hsa-let-7e Doxorubicin 31703 NSC123127 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-let-7e Verapamil 2520 NSC272366 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-let-7e Cisplatin 5460033 NSC119875 approved resistant High Tongue Squamous Cell Carcinoma cell line (Tca8113)
hsa-let-7e Fluorouracil 3385 NSC19893 approved resistant High Colon Cancer cell line (DLD-1)
hsa-let-7e Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive Low Ovarian Cancer tissue and cell line (A2780)
hsa-let-7e Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-let-7e Paclitaxel 36314 NSC125973 approved sensitive High Pan-Cancer cell line (NCI-H460, NCI-H522, NCI-H322M, HOP62, A549, EKVX, MALME-3M, NCI-H226, HT-29, HCT-116, SE-620, HCT-15, HCC2998, COLO205, HS-578T, NCI/ADR-RES, OVCAR8, OVCAR4, ACHN, SN-12C, 786-O, CAKI-1, UO-31, TK-10, A498, SK-MEL-28, UACC-257, M14, UACC-62, SK
hsa-let-7e Paclitaxel 36314 NSC125973 approved sensitive High Non-Small Cell Lung Cancer cell line (H1155, H358, H1993)
hsa-let-7e Doxorubicin 31703 NSC123127 approved sensitive Low Gastric Cancer cell line (SGC7901)
hsa-let-7e Vincristine 5978 approved sensitive Low Gastric Cancer cell line (SGC7901)
hsa-let-7e Gefitinib 123631 NSC715055 approved sensitive High Lung Adenocarcinoma cell line (A549)
hsa-let-7e Imatinib 5291 NSC743414 approved resistant High Gastrointestinal Stromal Tumor tissue
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Adenocarcinoma cell line (OE19)
hsa-let-7e Doxorubicin 31703 NSC123127 approved sensitive Low Breast Cancer tissue and cell line (MCF-7)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-let-7e Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-let-7e Fluorouracil 3385 NSC19893 approved sensitive High Colorectal Cancer cell line (DLD-1)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive Low Ovarian Cancer cell line (A2780, HO8910, ES2, CAOV3, SKOV3)
hsa-let-7e Fluorouracil 3385 NSC19893 approved sensitive Low Colorectal Cancer cell line (HCT-8)
hsa-let-7e Daunorubicin 30323 NSC82151 approved resistant High Acute Promyelocytic Leukemia cell line (HL60)
hsa-let-7e Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7C)
hsa-let-7e Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-let-7e Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-let-7e Gefitinib 123631 NSC715055 approved sensitive Low Non-Small Cell Lung Cancer cell line (PC-9)
hsa-let-7e Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375)
hsa-let-7e Gefitinib 123631 NSC715055 approved sensitive Low Colorectal Cancer cell line (HCT-116)
hsa-let-7e Regorafenib 11167602 NSC763932 approved sensitive Low Colorectal Cancer cell line (HCT-116)
hsa-let-7e Ribavirin+Pegylated IFNa-2b resistant tissue (chronic hepatitis C)
hsa-let-7e Exemestane 60198 NSC713563 approved sensitive cell line (MCF-7)
hsa-let-7e 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-let-7e Ethanol+Tamoxifen resistant cell line (LY2)
hsa-let-7e Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-let-7e Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-let-7e Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-let-7e Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-let-7e Paclitaxel 36314 NSC125973 approved resistant cell line (SKOV3)
hsa-let-7e Gemcitabine 60750 NSC613327 approved resistant cell line (HuH28)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive cell line (KYSE)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-let-7e Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-let-7e Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-let-7e Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-let-7e Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-let-7e Cisplatin 5460033 NSC119875 approved sensitive cell line (H460)
hsa-let-7e Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-let-7e-5p Alvocidib 5287969 NSC649890 resistant
hsa-let-7e-5p Ethyl, methoxy, prodigisine 135829283 NSC742418 resistant
hsa-let-7e-5p Platinum 23939 resistant Low Ovarian Cancer tissue
hsa-let-7e-5p Paclitaxel 36314 NSC125973 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-let-7e-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-let-7e-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-let-7e-5p Platinum 23939 resistant High High-Grade Serous Ovarian Cancer tissue
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-let-7e-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-let-7e-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-let-7e-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-let-7e-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-let-7e-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM17)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-let-7e-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-let-7e-5p Sunitinib 5329102 NSC750690 approved sensitive tissue (clear cell renal cell carcinoma)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-let-7e-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-let-7e-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-let-7e-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-let-7e-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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