miRTarBase - #MIRT502274


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pre-miRNA Information
pre-miRNA hsa-mir-3171   
Genomic Coordinates chr14: 27633205 - 27633278
Description Homo sapiens miR-3171 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3171
Sequence 10| AGAUGUAUGGAAUCUGUAUAUAUC |33
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1317334268 4 dbSNP
rs1412633952 16 dbSNP
rs967845497 17 dbSNP
rs1278913737 19 dbSNP
rs1348410638 24 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol H3F3B   
Synonyms H3.3B
Description H3 histone family member 3B
Transcript NM_005324   
Expression
Putative miRNA Targets on H3F3B
3'UTR of H3F3B
(miRNA target sites are highlighted)		 
>H3F3B|NM_005324|3'UTR
   1 GTGAAGGCAGTTTTTATGGCGTTTTGTAGTAAATTCTGTAAAATACTTTGGTTTAATTTGTGACTTTTTTTGTAAGAAAT
  81 TGTTTATAATATGTTGCATTTGTACTTAAGTCATTCCATCTTTCACTCAGGATGAATGCGAAAAGTGACTGTTCACAGAC
 161 CTCAGTGATGTGAGCACTGTTGCTCAGGAGTGACAAGTTGCTAATATGCAGAAGGGATGGGTGATACTTCTTGCTTCTCA
 241 TGATGCATGTTTCTGTATGTTAATGACTTGTTGGGTAGCTATTAAGGTACTAGAGTTGATAAATGTGTACAGGGTCCTTT
 321 TGCAATAAAACTGGTTATGACTTGATCCAAGTGTTTAACAATTGGGGCTGTTAAGTCTGACCATACATCACTGTGATAGA
 401 ATGTGGGCTTTTTCAAGGGTGAAGATACAAGTCTTAACCACAGTGTAACTTACAGTTTCCTTTAAAAAAAAAAAAAGTAA
 481 ACCTGGCAGCTATAGAATACACTATGTGCATTTATAATAGCTATTTTATATATTGTAGTATCAACATTTTTAAATTAAAT
 561 GTTTTACATTCACAAGTGGTGGGGAGTCTTGTCATTAAGGTGTGTGTAATTTAGAGTCCAGTTGGTTTTCTTCTGACTGC
 641 ACTTGTTCTCATAGTAGTAAAATGCTATGCGCATTTATACCTTGCATAAGTCCTCATTCTACCACATGTTAACCCTCTAG
 721 CTGATAATGCAAACACTAACTGGGGGATTTTATTTATAAGGGCTCTAGAAAAAACGAGTTATTCACACCAGCATCATCTT
 801 AACTAACATTCTGAACTAGTTAGTGCAGCTTTTCATTGTGTTGTGTGGTTGGTCTCATAACTAGGTTGAGTTTTTCTCCT
 881 CTGCTGAGGAAACAGTACCGAAGTTCTTTTTCTTGTGGCATTTGTATTATAAAAACTTGGTGTGGGGGAGGAGCACAAAA
 961 CTCCAGCCCACTGAACCTCTGCCAATTAAGATGGTGTTGGGTTAGGTTACATCTGGTTACTGTCCTGGGAAAATCATTTT
1041 TATAGAGATGGCCTTCCAAGTGGTTTTAAAATTTACTGAAGTTTTTAGGTCAATTATGTATGTTGACTAAATTTACAAAT
1121 AAACTTGTTTATCCAACTAAGTGTCCAAAACCTAAATTGAATGTACTAAGTTTTCACATGTCCCATTATCTAGGTCCTTG
1201 TATACTAATGTTTTGAACTTAGATCATTTCAGGTGTTGTTTGGTGGATAAAGGAACCTTTTATTTATAAAGATACTGTAG
1281 AAAGCATGTGAACAGCTCTCTGCTTGATTAAGATGCCATAATAGTGCTGTATTTGCAGTGTGGGCTAAGACAAAGTATAT
1361 TAATAAGCTTTTCAGCCCCCCCACTCCCGTTCCGTAGTGTAGAAGCCCACAGGTGTAGAACTCAGTCTTAAACTTCAGTA
1441 TGAAACCAGTTTCCTTGTGCGATGATGGCCACTAAAGCATAGTACGTGGATGTCAGTGAGACAGCATGAGAGCCAGCAGT
1521 CATCAAAGCGTTCCACGTTTGAAGTTAGCAACTGCTTAAAGTTATGCCCCATTAAAATTGCTTTCTCAAAAGTTTGGGTT
1601 AGTTTCAAATGTGATATTTTGGAGGGAAGGTAAAGTAGGTATCTTTCAGGTCGTGATAATGAGCTCCTATGAAAGGATGC
1681 AATATAATGACCCGCTTTTCTAGAAAGTTCATAATCAGCTCTGGAACAAGCACACTTGATTCCTCACTGTGCTTCAGAAT
1761 GAGATTAAGATCAGATGTTGGAACGTGCTATGCTGTAGCGTGTCTGGAAACAAAGTACACAAACCTGGCTACGGTGATGA
1841 GTTAGCTTCTGCTTACTACCTGTGACAACCCAAGTGGGTGACACTAGTGAACCTTCTCCAGTCTGCAGGCTGGCATAGAA
1921 GGCTCTTAGATTATATTGGGCAGCTTGCAATCTGCCGAAGCAGTGACTTGCATTTCCACACTTGGCTTGAGCACTCAACC
2001 CAGAAGGCGAAGATAGCTTTTGGTTGTAGGCGGCTTCCTGTATGGGATATCCCTCGGTAAGGGTAAAGGAGCAGAGGCAA
2081 AGGAGAAAAGCAGAAGTTGCAGCTGATGCAGGTATCCTATGCCCTTGATGGATGAGACTAAAATAAAATTTTTGAAGTTA
2161 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuAUAUAUGUCUAAGGUAUGUAGa 5'
            || :| | ||  ||||||||| 
Target 5' gtTAAGT-CTGA--CCATACATCa 3'
 370 - 390 157.00 -12.20
2 
miRNA  3' cuAUAUAUGUC--UAAGGUAUGUAGa 5'
            |||| |:||  |||::|||:||: 
Target 5' ttTATA-ATAGCTATTTTATATATTg 3'
 511 - 535 143.00 -7.40
3 
miRNA  3' cuaUAUAUGU-----CUA--AGGUAUGUAGa 5'
             ||||:||     |||   : |||| || 
Target 5' ctaATATGCAGAAGGGATGGGTGATACTTCt 3'
 201 - 231 123.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1183985 1 ClinVar
COSN30467033 2 COSMIC
COSN32070596 3 COSMIC
COSN22551114 9 COSMIC
COSN30735960 11 COSMIC
COSN30479665 15 COSMIC
COSN30501031 27 COSMIC
COSN30517580 43 COSMIC
COSN31523344 45 COSMIC
COSN18741229 48 COSMIC
COSN30110408 64 COSMIC
COSN30485169 69 COSMIC
COSN30126296 76 COSMIC
COSN31495834 76 COSMIC
COSN31609921 76 COSMIC
COSN30153592 116 COSMIC
COSN30458390 117 COSMIC
COSN18720425 199 COSMIC
COSN9322834 268 COSMIC
COSN31611061 388 COSMIC
COSN31924568 406 COSMIC
COSN31522501 407 COSMIC
COSN15662896 463 COSMIC
COSN20114440 463 COSMIC
COSN31570510 473 COSMIC
COSN26641157 478 COSMIC
COSN31524247 544 COSMIC
COSN7455529 689 COSMIC
COSN1729006 768 COSMIC
COSN31596003 768 COSMIC
COSN31588912 961 COSMIC
COSN29850659 1188 COSMIC
COSN31557674 1234 COSMIC
COSN31541042 1300 COSMIC
COSN26609466 1389 COSMIC
COSN15193828 1462 COSMIC
COSN1729005 1678 COSMIC
COSN19447407 1784 COSMIC
COSN26193227 1784 COSMIC
COSN26339913 1832 COSMIC
COSN31961380 1957 COSMIC
COSN27458771 1964 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs138810132 1 dbSNP
rs1182538481 2 dbSNP
rs1188312979 2 dbSNP
rs755819816 5 dbSNP
rs748559822 6 dbSNP
rs763854444 7 dbSNP
rs1232517058 8 dbSNP
rs781596034 11 dbSNP
rs755459492 12 dbSNP
rs752064798 15 dbSNP
rs1371001805 16 dbSNP
rs1424496890 16 dbSNP
rs543139829 17 dbSNP
rs1408187459 18 dbSNP
rs750488329 18 dbSNP
rs201839248 20 dbSNP
rs2410866 21 dbSNP
rs561174639 25 dbSNP
rs1308045282 32 dbSNP
rs1393589851 33 dbSNP
rs767295247 34 dbSNP
rs201242876 36 dbSNP
rs759426610 41 dbSNP
rs554802496 43 dbSNP
rs199968433 45 dbSNP
rs772814402 46 dbSNP
rs747751713 49 dbSNP
rs775393952 50 dbSNP
rs781439708 51 dbSNP
rs897593860 52 dbSNP
rs1035996187 53 dbSNP
rs2410865 59 dbSNP
rs1194085512 60 dbSNP
rs944391475 64 dbSNP
rs758290706 65 dbSNP
rs1388519224 67 dbSNP
rs1470232394 69 dbSNP
rs540874657 71 dbSNP
rs35916120 72 dbSNP
rs538957901 72 dbSNP
rs1427888785 73 dbSNP
rs1190043220 78 dbSNP
rs931793764 79 dbSNP
rs1488430684 85 dbSNP
rs373063808 86 dbSNP
rs925810921 88 dbSNP
rs1245670600 89 dbSNP
rs572158192 96 dbSNP
rs114101069 97 dbSNP
rs946105503 98 dbSNP
rs913325178 101 dbSNP
rs1289693840 104 dbSNP
rs993195985 105 dbSNP
rs1201922842 107 dbSNP
rs1269632574 111 dbSNP
rs1238617880 113 dbSNP
rs1271977133 116 dbSNP
rs545288184 117 dbSNP
rs577343148 118 dbSNP
rs1158927362 120 dbSNP
rs750599478 128 dbSNP
rs1304607345 130 dbSNP
rs528335709 130 dbSNP
rs1365585534 131 dbSNP
rs1390325122 134 dbSNP
rs1304304766 137 dbSNP
rs1338043925 139 dbSNP
rs952960863 142 dbSNP
rs1283946940 149 dbSNP
rs1027128866 150 dbSNP
rs765077919 152 dbSNP
rs994348179 153 dbSNP
rs2410864 154 dbSNP
rs1194142029 156 dbSNP
rs1014721696 161 dbSNP
rs1439460707 163 dbSNP
rs1008973830 164 dbSNP
rs1182498355 165 dbSNP
rs1384328406 166 dbSNP
rs1442578593 166 dbSNP
rs1165023345 167 dbSNP
rs1368975062 167 dbSNP
rs1307594871 169 dbSNP
rs118084969 170 dbSNP
rs2410863 172 dbSNP
rs1295911380 174 dbSNP
rs1392427685 175 dbSNP
rs781292335 175 dbSNP
rs890157652 176 dbSNP
rs182896596 185 dbSNP
rs1316247751 186 dbSNP
rs1341721678 190 dbSNP
rs1253129510 194 dbSNP
rs2410862 201 dbSNP
rs931893215 206 dbSNP
rs546663912 207 dbSNP
rs1309327823 210 dbSNP
rs2410861 211 dbSNP
rs1242470253 213 dbSNP
rs1459969948 214 dbSNP
rs757317532 215 dbSNP
rs751657487 217 dbSNP
rs2898588 220 dbSNP
rs1243570881 221 dbSNP
rs2410860 227 dbSNP
rs1182295673 228 dbSNP
rs1042837021 230 dbSNP
rs945883483 231 dbSNP
rs1462052444 233 dbSNP
rs913313886 233 dbSNP
rs1404523867 237 dbSNP
rs192562237 237 dbSNP
rs992959632 239 dbSNP
rs1337771822 240 dbSNP
rs938666284 243 dbSNP
rs566237569 252 dbSNP
rs1207723204 253 dbSNP
rs749315761 259 dbSNP
rs927295352 260 dbSNP
rs980525446 267 dbSNP
rs1321296752 270 dbSNP
rs142703331 270 dbSNP
rs1263471979 274 dbSNP
rs767908458 274 dbSNP
rs1348643532 277 dbSNP
rs1485438074 278 dbSNP
rs762139309 279 dbSNP
rs1263429270 281 dbSNP
rs552468682 285 dbSNP
rs1287808367 288 dbSNP
rs1428811168 290 dbSNP
rs1198065717 293 dbSNP
rs1426650183 293 dbSNP
rs1471230347 305 dbSNP
rs1396874379 310 dbSNP
rs3073415 312 dbSNP
rs1344937350 313 dbSNP
rs961572866 316 dbSNP
rs371218957 317 dbSNP
rs1465811438 326 dbSNP
rs1404609322 330 dbSNP
rs1008670376 337 dbSNP
rs1347488706 339 dbSNP
rs1225219244 347 dbSNP
rs1161918120 348 dbSNP
rs1301897113 357 dbSNP
rs1316054554 360 dbSNP
rs1213372249 361 dbSNP
rs1262343353 361 dbSNP
rs1485974919 362 dbSNP
rs1221348432 363 dbSNP
rs1266088921 373 dbSNP
rs1481150192 373 dbSNP
rs569355801 376 dbSNP
rs188328930 377 dbSNP
rs1456106675 380 dbSNP
rs1409206103 383 dbSNP
rs1180437823 384 dbSNP
rs1161691324 385 dbSNP
rs1346209223 386 dbSNP
rs1424200957 387 dbSNP
rs1028629532 389 dbSNP
rs1424072964 395 dbSNP
rs1257785898 396 dbSNP
rs1405641655 399 dbSNP
rs769865571 399 dbSNP
rs1179925179 402 dbSNP
rs1372525387 408 dbSNP
rs1482774209 411 dbSNP
rs11547398 414 dbSNP
rs1308856920 415 dbSNP
rs1354178355 416 dbSNP
rs1244739411 419 dbSNP
rs1289149457 424 dbSNP
rs996252077 428 dbSNP
rs1231850835 431 dbSNP
rs529649213 433 dbSNP
rs1479930676 436 dbSNP
rs904407168 443 dbSNP
rs1042991255 447 dbSNP
rs1444400173 449 dbSNP
rs1161838916 452 dbSNP
rs1387296387 453 dbSNP
rs527889044 453 dbSNP
rs370608501 455 dbSNP
rs938753455 457 dbSNP
rs1299848875 458 dbSNP
rs1267626913 459 dbSNP
rs1451667916 461 dbSNP
rs927380180 462 dbSNP
rs1426904957 463 dbSNP
rs1044366202 464 dbSNP
rs1271618660 476 dbSNP
rs1239331055 477 dbSNP
rs1305289412 477 dbSNP
rs1383269566 477 dbSNP
rs1461307664 477 dbSNP
rs535901088 477 dbSNP
rs931341408 477 dbSNP
rs920167858 478 dbSNP
rs1411735881 479 dbSNP
rs1417417077 479 dbSNP
rs973009796 479 dbSNP
rs1400929231 481 dbSNP
rs1156393161 482 dbSNP
rs961521244 482 dbSNP
rs1384750320 483 dbSNP
rs1448244074 489 dbSNP
rs1269233555 492 dbSNP
rs182451090 493 dbSNP
rs987387328 494 dbSNP
rs1258216051 497 dbSNP
rs527508453 500 dbSNP
rs1395812094 502 dbSNP
rs1366459854 503 dbSNP
rs1192666067 505 dbSNP
rs1443385064 505 dbSNP
rs781613779 506 dbSNP
rs1476548049 508 dbSNP
rs1029161909 510 dbSNP
rs1469181457 511 dbSNP
rs139736898 516 dbSNP
rs1407935512 517 dbSNP
rs1388507818 520 dbSNP
rs1157518408 521 dbSNP
rs968387582 523 dbSNP
rs1432511812 528 dbSNP
rs1278255677 529 dbSNP
rs1021482311 530 dbSNP
rs1222178706 532 dbSNP
rs1010131420 534 dbSNP
rs1346085988 535 dbSNP
rs1056934542 537 dbSNP
rs1448932327 538 dbSNP
rs1003123791 540 dbSNP
rs1443632380 541 dbSNP
rs1248480567 542 dbSNP
rs1479497932 544 dbSNP
rs545351800 545 dbSNP
rs905944631 549 dbSNP
rs1463512070 552 dbSNP
rs1379284906 553 dbSNP
rs1044909594 554 dbSNP
rs759530137 556 dbSNP
rs1157747342 558 dbSNP
rs1382578505 560 dbSNP
rs1358476593 561 dbSNP
rs1263754775 563 dbSNP
rs1244411493 566 dbSNP
rs1343111054 567 dbSNP
rs1363872155 568 dbSNP
rs1402577819 571 dbSNP
rs1304494347 575 dbSNP
rs1300316465 578 dbSNP
rs1332178283 579 dbSNP
rs931290526 580 dbSNP
rs919950080 583 dbSNP
rs1353323341 585 dbSNP
rs1241054153 588 dbSNP
rs1291328825 590 dbSNP
rs576403103 593 dbSNP
rs1224808748 598 dbSNP
rs1268194588 602 dbSNP
rs912813366 608 dbSNP
rs940225654 608 dbSNP
rs1425902625 611 dbSNP
rs1324722276 612 dbSNP
rs1386852842 613 dbSNP
rs1158818503 616 dbSNP
rs1384212818 617 dbSNP
rs986948067 619 dbSNP
rs954394396 622 dbSNP
rs1291279555 630 dbSNP
rs1423646584 633 dbSNP
rs921693204 635 dbSNP
rs1170273794 638 dbSNP
rs974491375 640 dbSNP
rs1314871764 641 dbSNP
rs1357510328 646 dbSNP
rs1266059737 648 dbSNP
rs1338862585 650 dbSNP
rs968335437 653 dbSNP
rs1021219030 654 dbSNP
rs1160795647 654 dbSNP
rs563713434 654 dbSNP
rs1242345866 660 dbSNP
rs955945971 660 dbSNP
rs1199574500 661 dbSNP
rs1036059078 663 dbSNP
rs1368469724 665 dbSNP
rs1461053833 666 dbSNP
rs1002702243 667 dbSNP
rs1403079999 669 dbSNP
rs1336458302 670 dbSNP
rs905721363 676 dbSNP
rs1397967920 678 dbSNP
rs1044482437 681 dbSNP
rs191137407 686 dbSNP
rs1483522990 689 dbSNP
rs571764753 690 dbSNP
rs1203474020 691 dbSNP
rs1341817752 692 dbSNP
rs1036999435 693 dbSNP
rs1199249435 705 dbSNP
rs1275809804 706 dbSNP
rs1459816168 707 dbSNP
rs144191240 708 dbSNP
rs554790121 709 dbSNP
rs1256402312 713 dbSNP
rs551679545 713 dbSNP
rs932820956 714 dbSNP
rs535085963 715 dbSNP
rs1176377791 718 dbSNP
rs1370798523 726 dbSNP
rs979587307 735 dbSNP
rs1303852199 736 dbSNP
rs1384526145 738 dbSNP
rs914327706 743 dbSNP
rs947105409 743 dbSNP
rs572341391 747 dbSNP
rs1309396271 752 dbSNP
rs558721711 755 dbSNP
rs1282573862 756 dbSNP
rs1427416861 758 dbSNP
rs1310425131 761 dbSNP
rs1211963088 763 dbSNP
rs1256408526 764 dbSNP
rs1203027782 765 dbSNP
rs1264655789 766 dbSNP
rs988435719 767 dbSNP
rs955935196 769 dbSNP
rs1427800842 770 dbSNP
rs1035599632 775 dbSNP
rs1363636987 775 dbSNP
rs1451838913 781 dbSNP
rs1300280892 789 dbSNP
rs772054158 790 dbSNP
rs981789590 791 dbSNP
rs1404394008 794 dbSNP
rs1301442949 796 dbSNP
rs538985013 798 dbSNP
rs1365367174 799 dbSNP
rs186388763 799 dbSNP
rs1301657337 800 dbSNP
rs1237423857 802 dbSNP
rs1316151668 802 dbSNP
rs1287736446 803 dbSNP
rs1488446196 804 dbSNP
rs1221087839 805 dbSNP
rs1266204596 807 dbSNP
rs746302089 808 dbSNP
rs1192311326 809 dbSNP
rs1250213402 810 dbSNP
rs1198819552 817 dbSNP
rs35754993 818 dbSNP
rs1160881098 819 dbSNP
rs550012587 822 dbSNP
rs756850181 826 dbSNP
rs1424304681 829 dbSNP
rs1161722851 831 dbSNP
rs1472927251 834 dbSNP
rs1254253039 835 dbSNP
rs1203366413 839 dbSNP
rs1022775161 844 dbSNP
rs746646268 847 dbSNP
rs751462814 854 dbSNP
rs531850959 857 dbSNP
rs995346132 859 dbSNP
rs1202499003 865 dbSNP
rs748072205 868 dbSNP
rs1287072115 870 dbSNP
rs1323034304 872 dbSNP
rs545585635 878 dbSNP
rs1251229006 881 dbSNP
rs1255858892 882 dbSNP
rs1222377193 883 dbSNP
rs766127594 883 dbSNP
rs1444184213 884 dbSNP
rs1182009528 885 dbSNP
rs1415966128 887 dbSNP
rs1350644396 893 dbSNP
rs1353854381 893 dbSNP
rs1464036822 894 dbSNP
rs1333097662 896 dbSNP
rs535889922 899 dbSNP
rs1407665615 900 dbSNP
rs1282075560 905 dbSNP
rs1380960890 906 dbSNP
rs576605441 909 dbSNP
rs1271721680 912 dbSNP
rs1316566891 912 dbSNP
rs891146876 915 dbSNP
rs1461147727 916 dbSNP
rs1208210905 917 dbSNP
rs1051333636 919 dbSNP
rs932871613 920 dbSNP
rs778811000 921 dbSNP
rs1185973393 924 dbSNP
rs562827225 925 dbSNP
rs900103151 926 dbSNP
rs1334773297 929 dbSNP
rs1043836642 930 dbSNP
rs1400679196 932 dbSNP
rs1334605754 935 dbSNP
rs567219126 936 dbSNP
rs201309741 939 dbSNP
rs36091349 941 dbSNP
rs988549010 941 dbSNP
rs1337813569 942 dbSNP
rs1220931347 944 dbSNP
rs934326618 946 dbSNP
rs1323518285 947 dbSNP
rs928266741 949 dbSNP
rs1281221049 957 dbSNP
rs188384328 960 dbSNP
rs1215363451 961 dbSNP
rs527358352 963 dbSNP
rs1022889910 964 dbSNP
rs565124576 967 dbSNP
rs962571118 970 dbSNP
rs1015671412 972 dbSNP
rs551593420 976 dbSNP
rs749834690 977 dbSNP
rs531494583 979 dbSNP
rs955500876 982 dbSNP
rs1030046870 983 dbSNP
rs560423997 985 dbSNP
rs1345401627 988 dbSNP
rs771594844 991 dbSNP
rs1043991140 995 dbSNP
rs1223368980 996 dbSNP
rs1284168456 997 dbSNP
rs1356199372 1001 dbSNP
rs1217387408 1003 dbSNP
rs1268328890 1004 dbSNP
rs1450910876 1004 dbSNP
rs1011019448 1006 dbSNP
rs542883100 1008 dbSNP
rs59093579 1009 dbSNP
rs1378093984 1010 dbSNP
rs1052636383 1019 dbSNP
rs1389418142 1021 dbSNP
rs1385557888 1024 dbSNP
rs561322563 1025 dbSNP
rs540684838 1034 dbSNP
rs1441921629 1038 dbSNP
rs928411475 1040 dbSNP
rs1349534472 1043 dbSNP
rs1379363905 1043 dbSNP
rs1241176308 1044 dbSNP
rs1284366372 1045 dbSNP
rs1291077514 1052 dbSNP
rs542787775 1053 dbSNP
rs1338555302 1056 dbSNP
rs541212160 1057 dbSNP
rs1291920055 1061 dbSNP
rs1335828982 1073 dbSNP
rs572195958 1078 dbSNP
rs773839037 1080 dbSNP
rs1157056964 1081 dbSNP
rs34473854 1082 dbSNP
rs35451907 1087 dbSNP
rs948406776 1088 dbSNP
rs1367315430 1090 dbSNP
rs1400128621 1091 dbSNP
rs1455948941 1092 dbSNP
rs915822390 1096 dbSNP
rs574058943 1097 dbSNP
rs1165285920 1101 dbSNP
rs1471924628 1104 dbSNP
rs1329665483 1111 dbSNP
rs558584141 1116 dbSNP
rs1447708822 1117 dbSNP
rs1314645689 1118 dbSNP
rs1338984873 1124 dbSNP
rs757422438 1124 dbSNP
rs78740696 1127 dbSNP
rs576201516 1129 dbSNP
rs1356937157 1134 dbSNP
rs1197961409 1135 dbSNP
rs536861519 1137 dbSNP
rs1458932487 1138 dbSNP
rs1255036220 1140 dbSNP
rs749728569 1141 dbSNP
rs566206800 1142 dbSNP
rs1368557399 1143 dbSNP
rs1477756417 1143 dbSNP
rs982648932 1146 dbSNP
rs1402833400 1147 dbSNP
rs1466455939 1147 dbSNP
rs536935512 1151 dbSNP
rs1400295772 1152 dbSNP
rs1445853003 1156 dbSNP
rs1029787598 1160 dbSNP
rs1339983580 1163 dbSNP
rs1055454038 1165 dbSNP
rs997247397 1166 dbSNP
rs567176982 1167 dbSNP
rs1319995766 1168 dbSNP
rs553727177 1168 dbSNP
rs113796231 1175 dbSNP
rs1482041068 1177 dbSNP
rs1356799738 1180 dbSNP
rs1022487401 1182 dbSNP
rs867228682 1183 dbSNP
rs1256159123 1185 dbSNP
rs183539335 1189 dbSNP
rs888248821 1191 dbSNP
rs796209643 1196 dbSNP
rs1190946471 1197 dbSNP
rs1228821336 1200 dbSNP
rs1426405174 1200 dbSNP
rs1367276426 1203 dbSNP
rs1286990876 1204 dbSNP
rs1376308114 1205 dbSNP
rs892734709 1207 dbSNP
rs1046896554 1209 dbSNP
rs1398218688 1210 dbSNP
rs551449287 1218 dbSNP
rs929854598 1220 dbSNP
rs1003715931 1222 dbSNP
rs1310220167 1224 dbSNP
rs1234886365 1225 dbSNP
rs141398190 1225 dbSNP
rs1325574398 1226 dbSNP
rs148328528 1236 dbSNP
rs549043561 1241 dbSNP
rs571557075 1241 dbSNP
rs911249506 1242 dbSNP
rs1191156717 1244 dbSNP
rs1265629474 1256 dbSNP
rs1384791301 1256 dbSNP
rs948352227 1257 dbSNP
rs1177326065 1259 dbSNP
rs529166672 1261 dbSNP
rs989535883 1262 dbSNP
rs1418147959 1263 dbSNP
rs1038060357 1264 dbSNP
rs1451647251 1266 dbSNP
rs1361278412 1271 dbSNP
rs554524395 1275 dbSNP
rs1365473429 1279 dbSNP
rs1388291170 1281 dbSNP
rs1303930253 1284 dbSNP
rs924068300 1288 dbSNP
rs751885940 1290 dbSNP
rs1478639621 1297 dbSNP
rs544402505 1298 dbSNP
rs865878517 1300 dbSNP
rs983020816 1306 dbSNP
rs1238009163 1307 dbSNP
rs371007292 1310 dbSNP
rs1205630112 1311 dbSNP
rs575636767 1313 dbSNP
rs1344123555 1316 dbSNP
rs991108421 1317 dbSNP
rs958599973 1318 dbSNP
rs190612804 1320 dbSNP
rs964116686 1321 dbSNP
rs1459424363 1324 dbSNP
rs185898507 1328 dbSNP
rs1005237395 1332 dbSNP
rs1444036841 1336 dbSNP
rs989449669 1338 dbSNP
rs1403137475 1339 dbSNP
rs1373682799 1340 dbSNP
rs1227242167 1345 dbSNP
rs73997619 1349 dbSNP
rs1308802084 1355 dbSNP
rs200686344 1363 dbSNP
rs398100626 1367 dbSNP
rs59192178 1367 dbSNP
rs1004110816 1368 dbSNP
rs1025399067 1369 dbSNP
rs906728508 1376 dbSNP
rs994400082 1377 dbSNP
rs1416080083 1380 dbSNP
rs1425444767 1381 dbSNP
rs565057306 1382 dbSNP
rs1422583645 1383 dbSNP
rs377180726 1383 dbSNP
rs1333200490 1384 dbSNP
rs1170146975 1386 dbSNP
rs73997618 1387 dbSNP
rs576262530 1388 dbSNP
rs1300521981 1389 dbSNP
rs1427805509 1393 dbSNP
rs1192455229 1394 dbSNP
rs753782833 1394 dbSNP
rs1234372346 1396 dbSNP
rs1479139658 1398 dbSNP
rs1316663469 1401 dbSNP
rs1267545273 1408 dbSNP
rs181998744 1409 dbSNP
rs1208322494 1410 dbSNP
rs760709905 1414 dbSNP
rs941046056 1421 dbSNP
rs887019071 1422 dbSNP
rs1476837303 1424 dbSNP
rs1419976135 1425 dbSNP
rs1483815825 1425 dbSNP
rs542996424 1431 dbSNP
rs1413482159 1433 dbSNP
rs1047003350 1434 dbSNP
rs189426472 1440 dbSNP
rs922439586 1445 dbSNP
rs1414836284 1447 dbSNP
rs767405548 1449 dbSNP
rs936704519 1452 dbSNP
rs942756376 1453 dbSNP
rs924012881 1454 dbSNP
rs1271069005 1460 dbSNP
rs554130593 1460 dbSNP
rs1312733023 1461 dbSNP
rs949562814 1464 dbSNP
rs1348916936 1465 dbSNP
rs918118380 1469 dbSNP
rs991452990 1471 dbSNP
rs1487232664 1472 dbSNP
rs1195239710 1473 dbSNP
rs1242440937 1478 dbSNP
rs1477564038 1481 dbSNP
rs959670146 1482 dbSNP
rs1396505780 1483 dbSNP
rs1435014648 1484 dbSNP
rs1033939621 1485 dbSNP
rs1289060856 1486 dbSNP
rs1358079949 1496 dbSNP
rs1422015284 1498 dbSNP
rs1411942207 1500 dbSNP
rs1331083362 1501 dbSNP
rs1434723303 1501 dbSNP
rs1277039777 1504 dbSNP
rs1371981032 1504 dbSNP
rs983761452 1505 dbSNP
rs952415951 1513 dbSNP
rs1031655853 1515 dbSNP
rs1361424128 1516 dbSNP
rs1025345577 1517 dbSNP
rs1060113 1521 dbSNP
rs1428039893 1523 dbSNP
rs571237598 1524 dbSNP
rs865869239 1529 dbSNP
rs1454395270 1536 dbSNP
rs557906001 1537 dbSNP
rs1176415770 1541 dbSNP
rs1483421785 1544 dbSNP
rs1470865990 1547 dbSNP
rs1158682388 1548 dbSNP
rs186693140 1551 dbSNP
rs1404154098 1558 dbSNP
rs796815716 1558 dbSNP
rs1395672202 1561 dbSNP
rs1446265983 1563 dbSNP
rs1005210287 1565 dbSNP
rs4567786 1566 dbSNP
rs1283734272 1567 dbSNP
rs1268898693 1568 dbSNP
rs1047188128 1569 dbSNP
rs10338 1570 dbSNP
rs754804938 1571 dbSNP
rs1039474495 1572 dbSNP
rs1235943177 1576 dbSNP
rs942574662 1579 dbSNP
rs915317102 1585 dbSNP
rs763523003 1587 dbSNP
rs1396818984 1588 dbSNP
rs1167773618 1589 dbSNP
rs1418962134 1593 dbSNP
rs989550331 1595 dbSNP
rs1329820294 1597 dbSNP
rs762471508 1598 dbSNP
rs1392198991 1599 dbSNP
rs1333515435 1602 dbSNP
rs1452615057 1605 dbSNP
rs539492251 1609 dbSNP
rs923941233 1610 dbSNP
rs1335434051 1612 dbSNP
rs1217779962 1614 dbSNP
rs529037656 1614 dbSNP
rs1159301235 1615 dbSNP
rs770167972 1617 dbSNP
rs1454832956 1622 dbSNP
rs1196018343 1628 dbSNP
rs769892483 1628 dbSNP
rs1042850881 1632 dbSNP
rs566759562 1634 dbSNP
rs1258826953 1636 dbSNP
rs753628824 1638 dbSNP
rs918058070 1639 dbSNP
rs1477815429 1642 dbSNP
rs1055302412 1643 dbSNP
rs1168911146 1646 dbSNP
rs146252863 1650 dbSNP
rs1462653625 1652 dbSNP
rs1424023889 1655 dbSNP
rs1415742192 1656 dbSNP
rs1172235762 1664 dbSNP
rs1400396029 1666 dbSNP
rs1181499406 1667 dbSNP
rs1416665987 1669 dbSNP
rs909462180 1669 dbSNP
rs990979563 1670 dbSNP
rs963569250 1671 dbSNP
rs985048668 1674 dbSNP
rs1328010094 1675 dbSNP
rs1060120 1676 dbSNP
rs1255026888 1678 dbSNP
rs1342526388 1680 dbSNP
rs1212391757 1681 dbSNP
rs1210671555 1684 dbSNP
rs115820619 1685 dbSNP
rs1192167874 1686 dbSNP
rs951220870 1691 dbSNP
rs74318232 1692 dbSNP
rs1198646723 1693 dbSNP
rs386799262 1693 dbSNP
rs965158777 1694 dbSNP
rs1436878005 1695 dbSNP
rs1019832359 1706 dbSNP
rs1359982591 1708 dbSNP
rs1039629049 1710 dbSNP
rs1364047215 1713 dbSNP
rs1006663660 1716 dbSNP
rs1006716191 1717 dbSNP
rs180811424 1719 dbSNP
rs569258160 1720 dbSNP
rs1236051935 1733 dbSNP
rs1323071179 1734 dbSNP
rs369382254 1735 dbSNP
rs1381009558 1736 dbSNP
rs1213093507 1738 dbSNP
rs1382225964 1741 dbSNP
rs539366979 1742 dbSNP
rs1486517462 1745 dbSNP
rs902483231 1747 dbSNP
rs369278122 1752 dbSNP
rs1265721351 1753 dbSNP
rs1042412431 1759 dbSNP
rs1366997933 1761 dbSNP
rs1194535139 1763 dbSNP
rs1000847097 1767 dbSNP
rs1437876393 1767 dbSNP
rs1161420696 1768 dbSNP
rs1014049473 1772 dbSNP
rs147629116 1773 dbSNP
rs1454263462 1776 dbSNP
rs949453186 1777 dbSNP
rs916822678 1779 dbSNP
rs896578760 1784 dbSNP
rs1375746560 1785 dbSNP
rs1055653918 1790 dbSNP
rs1308589596 1792 dbSNP
rs1317984391 1794 dbSNP
rs1244704206 1797 dbSNP
rs1390721045 1797 dbSNP
rs1195329584 1798 dbSNP
rs554470678 1799 dbSNP
rs909409900 1800 dbSNP
rs766994134 1801 dbSNP
rs1261191190 1808 dbSNP
rs1049288784 1812 dbSNP
rs373251506 1815 dbSNP
rs568271588 1815 dbSNP
rs796132453 1815 dbSNP
rs951126003 1815 dbSNP
rs1210460808 1817 dbSNP
rs1164025166 1818 dbSNP
rs929573402 1819 dbSNP
rs7342 1820 dbSNP
rs1462790807 1825 dbSNP
rs1018127028 1828 dbSNP
rs972433534 1832 dbSNP
rs965450701 1833 dbSNP
rs1299318904 1834 dbSNP
rs1373464998 1837 dbSNP
rs1395905732 1839 dbSNP
rs150303133 1841 dbSNP
rs796339408 1842 dbSNP
rs557767082 1844 dbSNP
rs893737061 1845 dbSNP
rs1257839746 1846 dbSNP
rs1305919817 1849 dbSNP
rs1053517111 1852 dbSNP
rs912311193 1856 dbSNP
rs537988512 1859 dbSNP
rs1300263287 1861 dbSNP
rs953843821 1862 dbSNP
rs1476179030 1863 dbSNP
rs1165305095 1868 dbSNP
rs575304869 1869 dbSNP
rs1407816235 1872 dbSNP
rs1326333449 1875 dbSNP
rs1354799519 1880 dbSNP
rs1465078043 1885 dbSNP
rs566888123 1885 dbSNP
rs1046947846 1886 dbSNP
rs555121221 1892 dbSNP
rs1386804143 1893 dbSNP
rs1479005899 1896 dbSNP
rs1415946054 1898 dbSNP
rs1277921672 1899 dbSNP
rs1367052794 1900 dbSNP
rs1360344338 1909 dbSNP
rs1300833358 1915 dbSNP
rs1000757772 1919 dbSNP
rs949396268 1922 dbSNP
rs1208802648 1930 dbSNP
rs758515415 1936 dbSNP
rs1169411266 1941 dbSNP
rs1188613138 1943 dbSNP
rs1241255174 1944 dbSNP
rs1021342192 1948 dbSNP
rs1013582190 1950 dbSNP
rs1188087643 1953 dbSNP
rs1055143525 1954 dbSNP
rs115789147 1956 dbSNP
rs1171129059 1957 dbSNP
rs140058830 1963 dbSNP
rs748212257 1966 dbSNP
rs1002274019 1970 dbSNP
rs887917782 1971 dbSNP
rs1433319557 1972 dbSNP
rs1271198950 1977 dbSNP
rs918327804 1980 dbSNP
rs1232374375 1981 dbSNP
rs976929872 1982 dbSNP
rs1049221793 1984 dbSNP
rs929525696 1992 dbSNP
rs898068627 1993 dbSNP
rs1194386002 1998 dbSNP
rs1041064770 2000 dbSNP
rs1217658656 2002 dbSNP
rs1017864181 2006 dbSNP
rs546523278 2007 dbSNP
rs570446529 2008 dbSNP
rs943698333 2009 dbSNP
rs1257029960 2012 dbSNP
rs985099457 2014 dbSNP
rs957910614 2017 dbSNP
rs1346905244 2022 dbSNP
rs1402968212 2026 dbSNP
rs779101310 2031 dbSNP
rs371761862 2032 dbSNP
rs932406225 2034 dbSNP
rs1328143664 2036 dbSNP
rs755995390 2037 dbSNP
rs925070565 2039 dbSNP
rs750442967 2042 dbSNP
rs1239507752 2043 dbSNP
rs1277912511 2045 dbSNP
rs1032711929 2047 dbSNP
rs1284637883 2047 dbSNP
rs1330679719 2050 dbSNP
rs1389394635 2051 dbSNP
rs979269277 2052 dbSNP
rs571353465 2053 dbSNP
rs1180392078 2055 dbSNP
rs999357371 2056 dbSNP
rs1159677093 2057 dbSNP
rs551350802 2059 dbSNP
rs750398070 2060 dbSNP
rs1167630223 2062 dbSNP
rs1395473721 2063 dbSNP
rs1020870035 2065 dbSNP
rs1391049790 2069 dbSNP
rs1427337064 2077 dbSNP
rs992510421 2078 dbSNP
rs3687 2086 dbSNP
rs1473053391 2089 dbSNP
rs1034110975 2091 dbSNP
rs1002220375 2092 dbSNP
rs1443091186 2093 dbSNP
rs887870356 2101 dbSNP
rs1334153388 2102 dbSNP
rs757058599 2103 dbSNP
rs1048481580 2109 dbSNP
rs546807197 2109 dbSNP
rs1194902351 2111 dbSNP
rs1247740280 2115 dbSNP
rs993622329 2116 dbSNP
rs751164941 2117 dbSNP
rs1474543999 2119 dbSNP
rs1206171924 2121 dbSNP
rs1040614626 2123 dbSNP
rs976287954 2124 dbSNP
rs1461629127 2140 dbSNP
rs1166351935 2141 dbSNP
rs944964038 2144 dbSNP
rs1222334015 2147 dbSNP
rs1329436111 2148 dbSNP
rs1312414912 2149 dbSNP
rs1354676764 2150 dbSNP
rs890771042 2150 dbSNP
rs1294858495 2154 dbSNP
rs753360333 2156 dbSNP
rs1226483811 2162 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_005324 | 3UTR | GACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005324 | 3UTR | UUUUGUAGUAAAUUCUGUAAAAUACUUUGGUUUAAUUUGUGACUUUUUUUGUAAGAAAUUGUUUAUAAUAUGUUGCAUUUGUACUUAAGUCAUUCCAUCUUUCACUCAGGAUGAAUGCGAAAAGUGACUGUUCACAGACCUCAGUGAUGUGAGCACUGUUGCUCAGGAGUGACAAGUUGCUAAUAUGCAGAAGGGAUGGGUGAUACUUCUUGCUUCUCAUGAUGCAUGUUUCUGUAUGUUAAUGACUUGUUGGGUAGCUAUUAAGGUACUAGAGUUGAUAAAUGUGUACAGGGUCCUUUUGCAAUAAAACUGGUUAUGACUUGAUCCAAGUGUUUAACAAUUGGGGCUGUUAAGUCUGACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_005324 | 3UTR | AAGGCAGUUUUUAUGGCGUUUUGUAGUAAAUUCUGUAAAAUACUUUGGUUUAAUUUGUGACUUUUUUUGUAAGAAAUUGUUUAUAAUAUGUUGCAUUUGUACUUAAGUCAUUCCAUCUUUCACUCAGGAUGAAUGCGAAAAGUGACUGUUCACAGACCUCAGUGAUGUGAGCACUGUUGCUCAGGAGUGACAAGUUGCUAAUAUGCAGAAGGGAUGGGUGAUACUUCUUGCUUCUCAUGAUGCAUGUUUCUGUAUGUUAAUGACUUGUUGGGUAGCUAUUAAGGUACUAGAGUUGAUAAAUGUGUACAGGGUCCUUUUGCAAUAAAACUGGUUAUGACUUGAUCCAAGUGUUUAACAAUUGGGGCUGUUAAGUCUGACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_005324 | 3UTR | AGUUUUUAUGGCGUUUUGUAGUAAAUUCUGUAAAAUACUUUGGUUUAAUUUGUGACUUUUUUUGUAAGAAAUUGUUUAUAAUAUGUUGCAUUUGUACUUAAGUCAUUCCAUCUUUCACUCAGGAUGAAUGCGAAAAGUGACUGUUCACAGACCUCAGUGAUGUGAGCACUGUUGCUCAGGAGUGACAAGUUGCUAAUAUGCAGAAGGGAUGGGUGAUACUUCUUGCUUCUCAUGAUGCAUGUUUCUGUAUGUUAAUGACUUGUUGGGUAGCUAUUAAGGUACUAGAGUUGAUAAAUGUGUACAGGGUCCUUUUGCAAUAAAACUGGUUAUGACUUGAUCCAAGUGUUUAACAAUUGGGGCUGUUAAGUCUGACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_005324 | 3UTR | UGGCGUUUUGUAGUAAAUUCUGUAAAAUACUUUGGUUUAAUUUGUGACUUUUUUUGUAAGAAAUUGUUUAUAAUAUGUUGCAUUUGUACUUAAGUCAUUCCAUCUUUCACUCAGGAUGAAUGCGAAAAGUGACUGUUCACAGACCUCAGUGAUGUGAGCACUGUUGCUCAGGAGUGACAAGUUGCUAAUAUGCAGAAGGGAUGGGUGAUACUUCUUGCUUCUCAUGAUGCAUGUUUCUGUAUGUUAAUGACUUGUUGGGUAGCUAUUAAGGUACUAGAGUUGAUAAAUGUGUACAGGGUCCUUUUGCAAUAAAACUGGUUAUGACUUGAUCCAAGUGUUUAACAAUUGGGGCUGUUAAGUCUGACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_005324 | 3UTR | ACUUGAUCCAAGUGUUUAACAAUUGGGGCUGUUAAGUCUGACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005324 | 3UTR | UGAAGGCAGUUUUUAUGGCGUUUUGUAGUAAAUUCUGUAAAAUACUUUGGUUUAAUUUGUGACUUUUUUUGUAAGAAAUUGUUUAUAAUAUGUUGCAUUUGUACUUAAGUCAUUCCAUCUUUCACUCAGGAUGAAUGCGAAAAGUGACUGUUCACAGACCUCAGUGAUGUGAGCACUGUUGCUCAGGAGUGACAAGUUGCUAAUAUGCAGAAGGGAUGGGUGAUACUUCUUGCUUCUCAUGAUGCAUGUUUCUGUAUGUUAAUGACUUGUUGGGUAGCUAUUAAGGUACUAGAGUUGAUAAAUGUGUACAGGGUCCUUUUGCAAUAAAACUGGUUAUGACUUGAUCCAAGUGUUUAACAAUUGGGGCUGUUAAGUCUGACCAUACAUCACUGUGAUAGAAUGUGGGCUUUUUCAAGGGUGAAGAUACAAGUCUUAACCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000591890.1 | 3UTR | ACCAUACAUCACUGUGAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000591890.1 | 3UTR | ACCAUACAUCACUGUGAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000591890.1 | 3UTR | UAAGUCUGACCAUACAUCACUGUGAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000591890.1 | 3UTR | ACCAUACAUCACUGUGAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000591890.1 | 3UTR | UCUGACCAUACAUCACUGUGAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
37 hsa-miR-3171 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT117345 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT152426 ARID3A AT-rich interaction domain 3A 2 2
MIRT227670 SET SET nuclear proto-oncogene 2 2
MIRT293606 PVR poliovirus receptor 2 2
MIRT442923 TFDP2 transcription factor Dp-2 2 2
MIRT447007 RSF1 remodeling and spacing factor 1 2 2
MIRT450195 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT450883 COL4A5 collagen type IV alpha 5 chain 2 2
MIRT459707 ZNF641 zinc finger protein 641 2 2
MIRT467111 SRI sorcin 2 2
MIRT468271 SFXN1 sideroflexin 1 2 2
MIRT484168 WDR82P1 WD repeat domain 82 pseudogene 1 2 8
MIRT502274 H3F3B H3 histone family member 3B 2 4
MIRT504190 FAM127B retrotransposon Gag like 8A 2 2
MIRT507718 CMPK1 cytidine/uridine monophosphate kinase 1 2 6
MIRT513852 JARID2 jumonji and AT-rich interaction domain containing 2 2 8
MIRT521900 PIAS1 protein inhibitor of activated STAT 1 2 2
MIRT525975 SPA17 sperm autoantigenic protein 17 2 2
MIRT534599 RORA RAR related orphan receptor A 2 2
MIRT537572 ESYT2 extended synaptotagmin 2 2 2
MIRT539261 ANKRD44 ankyrin repeat domain 44 2 2
MIRT544214 SRSF11 serine and arginine rich splicing factor 11 2 4
MIRT553877 SUPT7L SPT7 like, STAGA complex gamma subunit 2 4
MIRT564547 CCDC80 coiled-coil domain containing 80 2 2
MIRT571228 SYT9 synaptotagmin 9 2 2
MIRT572016 H3F3C H3 histone family member 3C 2 2
MIRT613116 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT629028 MMP16 matrix metallopeptidase 16 2 4
MIRT635228 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT641493 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT648008 ZNF431 zinc finger protein 431 2 2
MIRT697344 ZNF544 zinc finger protein 544 2 2
MIRT700991 PDE3A phosphodiesterase 3A 2 2
MIRT704714 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT705320 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT705387 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT715811 NUDT7 nudix hydrolase 7 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3171 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3171 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3171 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3171 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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