pre-miRNA Information
pre-miRNA hsa-mir-758   
Genomic Coordinates chr14: 101026020 - 101026107
Synonyms MIRN758, hsa-mir-758, MIR758
Description Homo sapiens miR-758 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-758-5p
Sequence 15| GAUGGUUGACCAGAGAGCACAC |36
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 16 14 + 101026049 29233923 MiREDiBase
A-to-I 21 14 + 101026054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372417522 1 dbSNP
rs748092616 2 dbSNP
rs1270901332 4 dbSNP
rs1364206491 5 dbSNP
rs1483583954 8 dbSNP
rs770931807 10 dbSNP
rs776760808 11 dbSNP
rs1360350664 12 dbSNP
rs759742151 13 dbSNP
rs1002938972 15 dbSNP
rs770107042 17 dbSNP
rs369242818 20 dbSNP
rs1217090272 21 dbSNP
rs763341052 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GNG12   
Synonyms -
Description G protein subunit gamma 12
Transcript NM_018841   
Expression
Putative miRNA Targets on GNG12
3'UTR of GNG12
(miRNA target sites are highlighted)
>GNG12|NM_018841|3'UTR
   1 TGGAATAGAGAAACAGCTCCTCGCCTCTTCCCAACAACGCAAATTATGAGCAGCTCCTTGAAGAGATTTACCTTCAGCTT
  81 ATTTGGTAACCACTGCTAATAACTAAAATGTTCTCAGCTTGGAATAATGGACTCTGAAGTCTCTATTTTCCAAGTTGTCC
 161 TTTCTCTTAAAATACCCTTTACTGATTTAATACAGAATAACAATCTTATTTTCCACTTGGTAACTATGGCTTTATGTTGG
 241 GTTACTGTTTAAGGAAAGTTGATCTGGGCCTTTTTAAAAACATAATTATATACTTTAGAAATACAAGGGATTCCGATATG
 321 TCAGGACCTAAATGGCCTAAGCACCTGTCAAATTAAAATTCCAAAATTCATTGAAATCCTAAAGCCTTGATATTATATTC
 401 TTTATAAGGCGTGTGCCAGCCTGTATAGTATATAAGAGAGAGGGGTGTTTGTGTGTATATATATATGCCTTTGTGTATAC
 481 ACTTATCAAAGCTATTTTCTTATGAAAACGTCCCTCTCTCCATACCATCAGTTTCTCAGTTCCAGAAGTTATACCTTTAT
 561 TTTGAGCTGTGTATAGGTAGAATAAAAAATTCCTTTCATATCGTTATTGTACAAAAAGTAAAGAGTATCCTAAAGATTGT
 641 ATTCATTGTAATCAAGTAATGCAATCATCTCTCCTCTCTTGAAATCTTGCTGGACCTCTTAGGCTACAATAAACTGTACC
 721 AAACTAAACTGACAGTCCTTCGATAATATGAAACATTAATTTACAAGGACCCGTTAGGGCTTCAATGATGCTGAGTCTGG
 801 AAAAGGGGAGGAGACCCTTGGGAGGACTCCAGGCAGCTGTGCTCCCAGGGCTCATGTTCTCTACTGGATTAGGGATAGGC
 881 ACCTCTGAAATCTCCACCCTGATGATTGGAATGAAACGGAGTGAACATGAGCCCAGCTGAGAGAGGAGCAGGAATGTGTG
 961 AAAAACAGCTGCTCTCCTTGTCCCAGCTTTGTGATTGAGCCCTCTGTCTTGCTCTCTCTGCCTTCCCTGTGTCTTTCTTC
1041 TCTTACCAGAGCATCTGTTTGCAGAGGTAACATTACCTTCCCCAGCCACAGGTATGTGGAATACGGTGAGGAAAAAAAAA
1121 ATTAAAAAAAAAATGCAAGCTGTCAGGATGCTTAAGCTCTTTTCAGACATCTGCAGTTTCATCCCTACCTTGTTCACATA
1201 CCATCCAAGAGGCACATAGGCTACCCAAGAGAGCCTTGGATTCAGTGGTACACTCCTTGGGCCCAAGGGCTTTAGCAGCT
1281 GGATATGGGGTTCCTTGATTTTCCTCTGGGCCCAAATATAGCCCTCACACTCTTGGAATTTCCAGGTATGGGGGTAGCCC
1361 CAAAAGGAGGAATCTCCTATGGCCAATAAGGTATCTTGACTTTATCAAAGTAGAAGAGAGGGTCACTTCGGAGTCAAATC
1441 ATACACTAGGCCTTTGATGCTTTAATTCTTCTTCAGTTCATTAAAAGTAACTACTAAGGAAAGGTTAAAAACTTCCCCTC
1521 AAAAAGGAATCAACCCCAGGAAGTAATTATTTACAACGATTTTCCCAAATTTTGTACAATCTGTCCTGGAAAGCAAACCC
1601 CTTTTAAAATCTAATGTCTGGGCTTTGAGTATTAGCTCATTTAGGGTGGACAAATGCATTACTGTTTTCAAACTGCTCAC
1681 ATTTATTCAGTATTTCTCCAAGTTGCTATCTACTCAGCCTTATGAATGCCCCTCGCTTTTCTAAGGCCATGTGAAAATCA
1761 CGGCACTGCCCTTAGCCTTGTGTCATCTGCTTTTTCGTTCTGCGATATGCCCAGTTCCCAAATCAATTATAGGTACCTGT
1841 TTAGGAGAGAGGAAGATTTTACCTCTCAAAGGGTGAGATTTGAAATTTACACTAAAAAGACAACTTTACATTTAATGCTT
1921 CACTTAATGAGACATTCTTTTTTTTATAAGTCTATTTTTCTACTCAGTTTCAGAACACTAATCTGATTTTCACTCTGATT
2001 TTTAACGTTTCTTTAAATATTTATAATGTAGCTTCTTTCAAAATATTTTCATGAAAAATTACTTTTATTATACCATTATG
2081 TGCATGTTATTGGTAGCAGGCATAGTTTATTATTTAGTACTGAAACATGCTCTTTTACCTAACAGTAAACAAGTATGTTT
2161 TGATATATATCTGTTAATATGCTTATAGTGGTAAGAAATGGACTTGAGGTCCCAGGAGATTTCATTTTATTCACCCTGGT
2241 CAGATACAATAAAGGCTATGAGTATAAATACATAACTTCCTAACCAGGTGTAGGGCATGTTCATGAATATCAAATCTTTT
2321 GATGCTGGACCCAAGAGAGGAAAAGTTGTAGCTAAATGTTGATTTACTTATAACTAGACGTCTATGTGAGAAAATATATG
2401 TATACATATATATGATATGCAGAAGTCACTTTTTTTATCAGGCTTTATTCTCCTTACAAAGCCACAGTTTAACTGTCTGC
2481 AACAGTTGGTTTATGTTAATGATAGACAAATACCCAGTGTTTGTTACTTTTTCCAACTACCACTGTAATGATAATCTTTC
2561 TCACGTATATACATGCAACTTCTTGGCTTCATTTCCATGAAGCTGTTTCAATATATTCAGTATACTTTGTCCTTAATGCT
2641 GCTTCTGTTAACAGTGATCTCTTTCTTTTTTTCATTCTTATATCTTCATTAGTTCATCATAAATCTGTCCAGTTGAGGCC
2721 TCAGGACCACGGCATGATTTCATGACTCCGAAGTATTTTACAGAAACATTTTTTAAATAAGGGAAATATTTTATATACCA
2801 GATGGTTCACAAGTGATGGCTCATAGCTAGTTTTTTTTTTTCTTCTAAAAAATGTCAGGTTTTTAAAATCATTTACCTTA
2881 TTAAAATGAAAAGTGCCATACTTAACTTTTAAAGGAAAGACCTGACTTGCTTTTTCTCTATTTAGACTGTTTTTGTACTT
2961 TACTAATCTTTAAACTATCAGGAAAAAAACCAAAACTTTATACCAATGATTTAGTAATTTTGAGGCATAGGGTAGCTTAC
3041 GTAGTGGAGGATGTGCCAAATATTCTCTTCAAATGCCACCTTCTCAATTTATAACTAAAATAGTGTTATCTGACTAATTC
3121 CTCTGAATTTTGATGTAAGATCTATATAGGCCCCCAAAATGATCGTAGTACATGCCAGTCATTTCTCAGTGAAATAAATA
3201 CAATACCAGAGTACATTATGGGTTTTATTGCTTTCTTTTATGGTAGACCTGTTAATGGGGAAAAAATACATCAAATCAAA
3281 TAGAATCTTATATCTGTATGTTAAAATAGAGCACTTACCTGAAGTCAGTGGCCTGGATCATAGCCCTGGATCATTTCCCA
3361 GTCTGTCCTGTGCTGTGTGACCTTGGACAAGGCGCTTCATCTCTCTGGGCCTCTATTTCTCCATTTGTAAAACAAGTGGC
3441 TGCAGTAGATGATGGCTGAGAGCCCTTCCTGTTCCCAGATGCCTTGGTCCAAAGACCCCACCCCTCTGCTGGTCCTGCCA
3521 ACGTGTTGGTGCTATAAGCTGCTTCAGATATAAAATTGGTTTATCTATAATGTTTGTTCATTTAATAGCTTCTAAAAGGC
3601 CTTTTTGTTATACAGTGCTTTTTTTCTAGTTTTATGGACTTGGTTACTGTAATAATGTCTTGTTTTTAGCCATGTAACTA
3681 CAAACAGATATTCTCTTGATGTCTTAGTAAATTTGCATTTGATATATCATTGATGAGATTTTGTTGTTATGTAATATTCT
3761 TTGGCTACGCATCTGTCCAGCATCTTATTAACCATAATACTGTGATCATTATTTGGAAATATGTCCTATGGAAAGAATAA
3841 AAGCATGTACTTCACAGCTAGCATGTTCACAGATTTGAAAGAAGTTTCATTAAAAGCACCATTGCTTTCTGTACTGCGTC
3921 AGTGCCTCATTGTATCATCCTACTTGTGTTTTGCTCAATAAATGAATAAAAGACCATTTCTCTTCAAAAAAAAAAAAAAA
4001 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cacacgagAGACCAGUUGGUAg 5'
                  |||  |:|||||| 
Target 5' gtccagcaTCTTATTAACCATa 3'
3775 - 3796 138.00 -10.10
2
miRNA  3' cacACGAGAGACCA----GUUGGUAg 5'
             ||:  ||  ||    |||:||| 
Target 5' catTGTAATCAAGTAATGCAATCATc 3'
644 - 669 129.00 -9.50
3
miRNA  3' cacaCGAG-AGACCAGUUGGUag 5'
              |||: |:||| :|||||  
Target 5' ttcaGCTTATTTGG-TAACCAct 3'
73 - 94 125.00 -13.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26977649 39 COSMIC
COSN31492858 66 COSMIC
COSN30472707 85 COSMIC
COSN30101900 164 COSMIC
COSN1107478 175 COSMIC
COSN25992964 310 COSMIC
COSN28089064 564 COSMIC
COSN26552372 733 COSMIC
COSN20672500 875 COSMIC
COSN28806212 879 COSMIC
COSN31570380 932 COSMIC
COSN19604830 999 COSMIC
COSN21094909 1004 COSMIC
COSN29656283 1123 COSMIC
COSN7052422 1125 COSMIC
COSN6042127 1600 COSMIC
COSN216747 1606 COSMIC
COSN21161642 1735 COSMIC
COSN26235136 1879 COSMIC
COSN25736231 1910 COSMIC
COSN7277750 1972 COSMIC
COSN25210549 2121 COSMIC
COSN22276120 2519 COSMIC
COSN26343125 2602 COSMIC
COSN27576585 2830 COSMIC
COSN20094928 2831 COSMIC
COSN17078513 3188 COSMIC
COSN26482225 3518 COSMIC
COSN26640571 3538 COSMIC
COSN31530169 3558 COSMIC
COSN15381831 3570 COSMIC
COSN28769154 3643 COSMIC
COSN26649860 3670 COSMIC
COSN31548812 3759 COSMIC
COSN31567975 3768 COSMIC
COSN1107477 3771 COSMIC
COSN31536777 3925 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778036855 2 dbSNP
rs1443327549 4 dbSNP
rs111445182 9 dbSNP
rs890675821 10 dbSNP
rs368515270 17 dbSNP
rs753197245 22 dbSNP
rs374150257 23 dbSNP
rs1414665659 27 dbSNP
rs573708614 29 dbSNP
rs372297619 31 dbSNP
rs113817847 34 dbSNP
rs1401028609 35 dbSNP
rs753541054 38 dbSNP
rs373833781 39 dbSNP
rs370081170 46 dbSNP
rs1409883338 64 dbSNP
rs1227719441 65 dbSNP
rs1288832983 69 dbSNP
rs1330988364 74 dbSNP
rs571208080 81 dbSNP
rs1221408839 86 dbSNP
rs190580980 103 dbSNP
rs1345974277 106 dbSNP
rs536998272 108 dbSNP
rs568464156 109 dbSNP
rs1248526825 132 dbSNP
rs1046790622 135 dbSNP
rs1409816753 142 dbSNP
rs1254538134 159 dbSNP
rs773725682 165 dbSNP
rs770955679 166 dbSNP
rs1479690785 173 dbSNP
rs548359378 187 dbSNP
rs1189312148 192 dbSNP
rs948498528 203 dbSNP
rs917089160 204 dbSNP
rs1393693837 205 dbSNP
rs1408644569 210 dbSNP
rs1308582184 214 dbSNP
rs1487951628 217 dbSNP
rs765968908 221 dbSNP
rs760251491 226 dbSNP
rs950016282 229 dbSNP
rs917126176 239 dbSNP
rs188229809 245 dbSNP
rs1249800031 250 dbSNP
rs1341577243 255 dbSNP
rs1266940753 259 dbSNP
rs1205932880 269 dbSNP
rs1238885010 280 dbSNP
rs937154018 282 dbSNP
rs139526167 284 dbSNP
rs973157675 288 dbSNP
rs962056812 291 dbSNP
rs1217871379 293 dbSNP
rs749857498 301 dbSNP
rs907551212 304 dbSNP
rs371957677 312 dbSNP
rs202241300 314 dbSNP
rs374533216 316 dbSNP
rs987512176 318 dbSNP
rs183347842 319 dbSNP
rs764699366 322 dbSNP
rs563199258 323 dbSNP
rs1029183883 327 dbSNP
rs531973346 330 dbSNP
rs1454237347 351 dbSNP
rs958194266 361 dbSNP
rs763426083 363 dbSNP
rs1346962047 364 dbSNP
rs978143586 366 dbSNP
rs999619062 368 dbSNP
rs1229321718 372 dbSNP
rs1173668247 378 dbSNP
rs1357295871 379 dbSNP
rs902572323 384 dbSNP
rs1221477854 391 dbSNP
rs1432333965 393 dbSNP
rs968536780 395 dbSNP
rs1022370121 398 dbSNP
rs190980766 400 dbSNP
rs1448489971 404 dbSNP
rs1013992000 410 dbSNP
rs147777562 411 dbSNP
rs1442199593 412 dbSNP
rs1164027066 427 dbSNP
rs889913695 432 dbSNP
rs1459288705 433 dbSNP
rs1286898856 436 dbSNP
rs560953122 440 dbSNP
rs1447295144 442 dbSNP
rs1388249408 443 dbSNP
rs1055711564 445 dbSNP
rs1277352175 449 dbSNP
rs937207821 455 dbSNP
rs920428155 457 dbSNP
rs1227762539 461 dbSNP
rs768435249 467 dbSNP
rs1323995696 468 dbSNP
rs775890447 483 dbSNP
rs1267910509 488 dbSNP
rs770138878 492 dbSNP
rs149674152 494 dbSNP
rs1249449856 497 dbSNP
rs1482019619 503 dbSNP
rs1180744900 507 dbSNP
rs139454756 509 dbSNP
rs117317528 510 dbSNP
rs1425475055 511 dbSNP
rs759828956 513 dbSNP
rs940462790 515 dbSNP
rs888118584 519 dbSNP
rs1457534657 523 dbSNP
rs1044127859 530 dbSNP
rs1404153698 531 dbSNP
rs1263071843 538 dbSNP
rs1227569039 548 dbSNP
rs1447443785 549 dbSNP
rs907602792 550 dbSNP
rs987176566 551 dbSNP
rs1303494258 552 dbSNP
rs954525847 555 dbSNP
rs948467562 561 dbSNP
rs1390174308 566 dbSNP
rs1347565178 567 dbSNP
rs776926327 570 dbSNP
rs922222775 573 dbSNP
rs1269676313 576 dbSNP
rs974976280 577 dbSNP
rs1310075353 584 dbSNP
rs576341023 590 dbSNP
rs771010384 600 dbSNP
rs958246556 602 dbSNP
rs186109832 603 dbSNP
rs1483906027 622 dbSNP
rs1179961527 624 dbSNP
rs1382888155 624 dbSNP
rs1000073412 626 dbSNP
rs934557631 635 dbSNP
rs1300968668 637 dbSNP
rs1161065674 645 dbSNP
rs577518154 655 dbSNP
rs1414108034 658 dbSNP
rs966849523 659 dbSNP
rs1375772214 663 dbSNP
rs180806474 664 dbSNP
rs985487832 669 dbSNP
rs537766119 676 dbSNP
rs1412142948 679 dbSNP
rs1281762422 680 dbSNP
rs1427415550 681 dbSNP
rs1367275632 689 dbSNP
rs1218278967 691 dbSNP
rs1029765631 704 dbSNP
rs1389205764 724 dbSNP
rs998403824 741 dbSNP
rs79383732 742 dbSNP
rs1483338384 748 dbSNP
rs376946992 756 dbSNP
rs577943194 757 dbSNP
rs34458460 769 dbSNP
rs773143970 772 dbSNP
rs1477551240 773 dbSNP
rs1001468381 778 dbSNP
rs1427503444 779 dbSNP
rs777685503 785 dbSNP
rs1168036159 786 dbSNP
rs1485640547 792 dbSNP
rs76353201 799 dbSNP
rs79583445 800 dbSNP
rs76547382 802 dbSNP
rs1037567316 803 dbSNP
rs940499500 806 dbSNP
rs548592891 807 dbSNP
rs886231324 814 dbSNP
rs772188397 820 dbSNP
rs1349693134 825 dbSNP
rs1437568566 832 dbSNP
rs1275119671 833 dbSNP
rs1369246710 834 dbSNP
rs1225630433 835 dbSNP
rs1213551914 837 dbSNP
rs534807303 841 dbSNP
rs933053727 844 dbSNP
rs921607920 849 dbSNP
rs1296209737 853 dbSNP
rs1251018344 854 dbSNP
rs141550359 856 dbSNP
rs552265740 861 dbSNP
rs1309261247 863 dbSNP
rs1310677131 864 dbSNP
rs1287583117 868 dbSNP
rs1012659656 873 dbSNP
rs15471 875 dbSNP
rs925525853 878 dbSNP
rs9549 879 dbSNP
rs1447876884 882 dbSNP
rs1188106962 883 dbSNP
rs1407815449 892 dbSNP
rs934547545 895 dbSNP
rs1451362829 898 dbSNP
rs1161997789 907 dbSNP
rs559727831 910 dbSNP
rs1406355735 916 dbSNP
rs1025106865 917 dbSNP
rs549772351 918 dbSNP
rs546628776 925 dbSNP
rs1319390820 927 dbSNP
rs1365325180 932 dbSNP
rs1229948543 935 dbSNP
rs959420071 940 dbSNP
rs567656708 943 dbSNP
rs1282397589 945 dbSNP
rs915215063 946 dbSNP
rs1033691398 949 dbSNP
rs546362387 961 dbSNP
rs1291784265 962 dbSNP
rs899102809 966 dbSNP
rs1016590945 972 dbSNP
rs780519511 973 dbSNP
rs1004754819 980 dbSNP
rs115148897 989 dbSNP
rs954125371 991 dbSNP
rs1051569174 995 dbSNP
rs1185466621 1002 dbSNP
rs1237476959 1005 dbSNP
rs560699249 1006 dbSNP
rs115299854 1015 dbSNP
rs140134246 1016 dbSNP
rs977246741 1020 dbSNP
rs564927685 1025 dbSNP
rs1388879311 1026 dbSNP
rs1263752372 1038 dbSNP
rs961526054 1040 dbSNP
rs545147124 1045 dbSNP
rs1339315568 1046 dbSNP
rs755688447 1047 dbSNP
rs1016193419 1057 dbSNP
rs749997146 1058 dbSNP
rs1005771561 1062 dbSNP
rs12072422 1065 dbSNP
rs1227527015 1074 dbSNP
rs557568339 1077 dbSNP
rs15472 1078 dbSNP
rs1329314066 1082 dbSNP
rs1255573936 1084 dbSNP
rs1443008786 1087 dbSNP
rs1190260312 1089 dbSNP
rs918097507 1090 dbSNP
rs750712828 1092 dbSNP
rs1388217124 1098 dbSNP
rs959470367 1100 dbSNP
rs1183348861 1104 dbSNP
rs767522900 1105 dbSNP
rs555790005 1108 dbSNP
rs543738243 1110 dbSNP
rs1419418442 1111 dbSNP
rs75634619 1112 dbSNP
rs554432363 1116 dbSNP
rs1015562747 1121 dbSNP
rs1035411769 1122 dbSNP
rs1314706444 1122 dbSNP
rs999013314 1123 dbSNP
rs11209142 1124 dbSNP
rs1288731757 1124 dbSNP
rs1043295384 1125 dbSNP
rs1345867057 1134 dbSNP
rs889070315 1134 dbSNP
rs947286949 1134 dbSNP
rs1049709494 1135 dbSNP
rs886337688 1136 dbSNP
rs932619601 1142 dbSNP
rs1206428028 1148 dbSNP
rs1254426742 1148 dbSNP
rs1431767445 1157 dbSNP
rs1196338722 1167 dbSNP
rs1030593260 1168 dbSNP
rs1376689767 1175 dbSNP
rs922595495 1182 dbSNP
rs1174967172 1187 dbSNP
rs997292114 1189 dbSNP
rs554659330 1192 dbSNP
rs976837551 1205 dbSNP
rs12027405 1206 dbSNP
rs1206681493 1212 dbSNP
rs940112258 1216 dbSNP
rs908694926 1217 dbSNP
rs867562272 1218 dbSNP
rs1349944962 1224 dbSNP
rs114173897 1226 dbSNP
rs757344271 1239 dbSNP
rs984314162 1241 dbSNP
rs867052827 1243 dbSNP
rs1253551135 1247 dbSNP
rs1487735519 1252 dbSNP
rs763652090 1253 dbSNP
rs1266312914 1255 dbSNP
rs1038758871 1256 dbSNP
rs959694734 1257 dbSNP
rs1387786996 1261 dbSNP
rs1035782417 1263 dbSNP
rs1000535933 1266 dbSNP
rs1374694982 1283 dbSNP
rs565737041 1283 dbSNP
rs1456260466 1286 dbSNP
rs558596042 1287 dbSNP
rs1391111772 1289 dbSNP
rs903519120 1290 dbSNP
rs902961572 1297 dbSNP
rs1042031206 1298 dbSNP
rs1318019349 1306 dbSNP
rs1229208961 1309 dbSNP
rs186167004 1316 dbSNP
rs1320436739 1319 dbSNP
rs918160687 1321 dbSNP
rs1021455752 1335 dbSNP
rs1337317152 1343 dbSNP
rs1011398357 1348 dbSNP
rs1056668581 1349 dbSNP
rs1464087771 1355 dbSNP
rs888956355 1362 dbSNP
rs1263840550 1367 dbSNP
rs760298002 1374 dbSNP
rs926727610 1376 dbSNP
rs556551413 1378 dbSNP
rs569498046 1379 dbSNP
rs974164250 1386 dbSNP
rs1388137517 1393 dbSNP
rs181645457 1397 dbSNP
rs3737745 1399 dbSNP
rs1376989298 1402 dbSNP
rs908557545 1405 dbSNP
rs982776524 1408 dbSNP
rs1357782892 1411 dbSNP
rs529941295 1425 dbSNP
rs1041470244 1429 dbSNP
rs190331107 1430 dbSNP
rs775044755 1431 dbSNP
rs767301295 1438 dbSNP
rs1481967620 1440 dbSNP
rs1017350901 1444 dbSNP
rs1258116215 1445 dbSNP
rs1476090588 1449 dbSNP
rs1000588345 1451 dbSNP
rs1179738262 1451 dbSNP
rs984283151 1466 dbSNP
rs903572799 1470 dbSNP
rs761117265 1475 dbSNP
rs1206848080 1478 dbSNP
rs1342564877 1502 dbSNP
rs1279356960 1512 dbSNP
rs1042473115 1513 dbSNP
rs1372807242 1518 dbSNP
rs1009215527 1520 dbSNP
rs1294725366 1521 dbSNP
rs1351414100 1523 dbSNP
rs896769198 1534 dbSNP
rs931437687 1538 dbSNP
rs17130199 1539 dbSNP
rs556773027 1542 dbSNP
rs1319509364 1550 dbSNP
rs991717811 1553 dbSNP
rs960583011 1554 dbSNP
rs1250808993 1557 dbSNP
rs527250365 1558 dbSNP
rs938211914 1574 dbSNP
rs564889623 1578 dbSNP
rs926783211 1579 dbSNP
rs1035351469 1583 dbSNP
rs1176863657 1585 dbSNP
rs1435570389 1593 dbSNP
rs1377293745 1600 dbSNP
rs1428385670 1602 dbSNP
rs977529649 1606 dbSNP
rs1371580421 1616 dbSNP
rs1038525225 1617 dbSNP
rs1444782592 1628 dbSNP
rs1299563099 1631 dbSNP
rs941457508 1645 dbSNP
rs908612180 1646 dbSNP
rs566501840 1659 dbSNP
rs955399527 1671 dbSNP
rs531463962 1687 dbSNP
rs1273767394 1690 dbSNP
rs1206320219 1700 dbSNP
rs1438233961 1700 dbSNP
rs975973644 1709 dbSNP
rs770992887 1716 dbSNP
rs1488286180 1717 dbSNP
rs1194429759 1720 dbSNP
rs1396999569 1729 dbSNP
rs964574214 1734 dbSNP
rs184989709 1735 dbSNP
rs544037519 1748 dbSNP
rs1440687168 1750 dbSNP
rs574945643 1751 dbSNP
rs968223626 1752 dbSNP
rs749300417 1762 dbSNP
rs763972429 1763 dbSNP
rs762988704 1770 dbSNP
rs1211380899 1779 dbSNP
rs1349607663 1796 dbSNP
rs72922732 1797 dbSNP
rs1326121677 1800 dbSNP
rs1004657115 1803 dbSNP
rs569678318 1804 dbSNP
rs1034646978 1817 dbSNP
rs1213656509 1819 dbSNP
rs1216197630 1826 dbSNP
rs1339392537 1833 dbSNP
rs1287473481 1839 dbSNP
rs887126170 1847 dbSNP
rs1271447858 1852 dbSNP
rs1002476351 1861 dbSNP
rs541345988 1863 dbSNP
rs1255095744 1865 dbSNP
rs1463629856 1869 dbSNP
rs1354189866 1871 dbSNP
rs181406452 1877 dbSNP
rs941520734 1879 dbSNP
rs189533261 1894 dbSNP
rs35883238 1899 dbSNP
rs1161910738 1925 dbSNP
rs1056003676 1932 dbSNP
rs765180103 1933 dbSNP
rs928914252 1936 dbSNP
rs538723431 1945 dbSNP
rs977708871 1946 dbSNP
rs1326434443 1947 dbSNP
rs1047136853 1954 dbSNP
rs1432843523 1954 dbSNP
rs138345972 1976 dbSNP
rs144723240 1980 dbSNP
rs922622011 1990 dbSNP
rs1233639499 1992 dbSNP
rs1409613238 2006 dbSNP
rs1420299659 2007 dbSNP
rs1208288181 2014 dbSNP
rs1169794697 2020 dbSNP
rs1285054126 2020 dbSNP
rs989827856 2023 dbSNP
rs975355461 2024 dbSNP
rs1417137959 2025 dbSNP
rs1475762610 2038 dbSNP
rs1190508015 2050 dbSNP
rs943318368 2055 dbSNP
rs41296163 2065 dbSNP
rs1486505718 2068 dbSNP
rs1230963940 2073 dbSNP
rs1157590978 2095 dbSNP
rs536405075 2102 dbSNP
rs1401914851 2105 dbSNP
rs1332156261 2111 dbSNP
rs1374765539 2113 dbSNP
rs979711658 2127 dbSNP
rs183970601 2142 dbSNP
rs868084080 2150 dbSNP
rs1203313319 2157 dbSNP
rs781294496 2164 dbSNP
rs1294912672 2173 dbSNP
rs1348328051 2181 dbSNP
rs1438106127 2185 dbSNP
rs1228053323 2191 dbSNP
rs1274499348 2199 dbSNP
rs1280312775 2203 dbSNP
rs1021170928 2209 dbSNP
rs1198774190 2223 dbSNP
rs1278621309 2233 dbSNP
rs1486277729 2234 dbSNP
rs1213575554 2239 dbSNP
rs1250104290 2244 dbSNP
rs1472440609 2245 dbSNP
rs1180703904 2249 dbSNP
rs776427127 2258 dbSNP
rs1470914596 2260 dbSNP
rs1170279899 2271 dbSNP
rs1393892947 2279 dbSNP
rs755313410 2287 dbSNP
rs567372243 2289 dbSNP
rs12016645 2290 dbSNP
rs770504267 2293 dbSNP
rs150966345 2295 dbSNP
rs1329843248 2302 dbSNP
rs1390585855 2302 dbSNP
rs1337751819 2326 dbSNP
rs569149135 2327 dbSNP
rs1034697761 2335 dbSNP
rs747340884 2338 dbSNP
rs1293162533 2339 dbSNP
rs1302784900 2340 dbSNP
rs1001857717 2343 dbSNP
rs780535595 2344 dbSNP
rs1273078057 2345 dbSNP
rs1357686264 2356 dbSNP
rs1250864381 2358 dbSNP
rs550761473 2360 dbSNP
rs1441742981 2370 dbSNP
rs1196221431 2371 dbSNP
rs878939686 2376 dbSNP
rs1006169464 2379 dbSNP
rs995578522 2380 dbSNP
rs760280542 2390 dbSNP
rs1461355749 2392 dbSNP
rs887291781 2409 dbSNP
rs11544220 2413 dbSNP
rs1055963396 2414 dbSNP
rs1398290380 2414 dbSNP
rs1325414697 2419 dbSNP
rs938814868 2422 dbSNP
rs1459893264 2428 dbSNP
rs1047649157 2430 dbSNP
rs1443153287 2436 dbSNP
rs1042339261 2437 dbSNP
rs1296131313 2437 dbSNP
rs1307410051 2437 dbSNP
rs928821871 2437 dbSNP
rs1354635009 2444 dbSNP
rs1393868728 2457 dbSNP
rs1207727546 2464 dbSNP
rs1251967209 2477 dbSNP
rs191349874 2482 dbSNP
rs56926776 2486 dbSNP
rs1039700300 2489 dbSNP
rs1405509575 2490 dbSNP
rs1246180226 2502 dbSNP
rs551444941 2507 dbSNP
rs942700590 2508 dbSNP
rs188038053 2510 dbSNP
rs1176478024 2511 dbSNP
rs979380624 2512 dbSNP
rs1374606117 2516 dbSNP
rs41311166 2519 dbSNP
rs913755059 2522 dbSNP
rs988352460 2527 dbSNP
rs140862907 2531 dbSNP
rs1273275057 2535 dbSNP
rs927679619 2537 dbSNP
rs1361274842 2551 dbSNP
rs1383295654 2554 dbSNP
rs980475164 2562 dbSNP
rs1298311179 2563 dbSNP
rs1339133763 2564 dbSNP
rs1272233117 2565 dbSNP
rs138130784 2567 dbSNP
rs1215116337 2572 dbSNP
rs1016978925 2574 dbSNP
rs146976760 2591 dbSNP
rs1337667143 2597 dbSNP
rs1485237025 2599 dbSNP
rs951686174 2619 dbSNP
rs1263726467 2631 dbSNP
rs1421903883 2632 dbSNP
rs41312728 2650 dbSNP
rs749868277 2651 dbSNP
rs1374534541 2657 dbSNP
rs572431525 2670 dbSNP
rs1281446631 2673 dbSNP
rs1438986376 2674 dbSNP
rs752342867 2676 dbSNP
rs1326734901 2677 dbSNP
rs1039754250 2678 dbSNP
rs1462947582 2680 dbSNP
rs1006894433 2681 dbSNP
rs111795245 2699 dbSNP
rs904534855 2709 dbSNP
rs1294306968 2710 dbSNP
rs1357685094 2715 dbSNP
rs1234783386 2717 dbSNP
rs542674714 2719 dbSNP
rs3171009 2725 dbSNP
rs1315853799 2729 dbSNP
rs1043428496 2730 dbSNP
rs1158081223 2731 dbSNP
rs946668723 2734 dbSNP
rs1409929737 2736 dbSNP
rs1257999136 2746 dbSNP
rs545040627 2749 dbSNP
rs865842255 2750 dbSNP
rs1453437621 2756 dbSNP
rs1419819620 2760 dbSNP
rs939166489 2762 dbSNP
rs1034807712 2768 dbSNP
rs576368507 2796 dbSNP
rs1375943164 2799 dbSNP
rs1002977457 2809 dbSNP
rs1313979744 2811 dbSNP
rs907335830 2830 dbSNP
rs1408353161 2833 dbSNP
rs1296159254 2836 dbSNP
rs1372140866 2838 dbSNP
rs1223936654 2842 dbSNP
rs1233501186 2842 dbSNP
rs1345061497 2842 dbSNP
rs201633419 2842 dbSNP
rs75397461 2843 dbSNP
rs1194996595 2845 dbSNP
rs1202179562 2846 dbSNP
rs1232585495 2850 dbSNP
rs1489740946 2853 dbSNP
rs536363463 2854 dbSNP
rs1179101254 2865 dbSNP
rs969088772 2898 dbSNP
rs1453821327 2906 dbSNP
rs1174859885 2913 dbSNP
rs200100391 2915 dbSNP
rs909562304 2934 dbSNP
rs1428286259 2940 dbSNP
rs1170206054 2948 dbSNP
rs573764294 2958 dbSNP
rs984177664 2959 dbSNP
rs946282373 2962 dbSNP
rs1442520532 2966 dbSNP
rs565409578 2974 dbSNP
rs1232348877 2981 dbSNP
rs549600731 2983 dbSNP
rs1368206150 2990 dbSNP
rs76137184 2990 dbSNP
rs1026311883 2996 dbSNP
rs184980651 2998 dbSNP
rs998343012 2999 dbSNP
rs755967666 3001 dbSNP
rs1212680184 3002 dbSNP
rs965524901 3003 dbSNP
rs1272029776 3011 dbSNP
rs931617360 3014 dbSNP
rs1288176505 3030 dbSNP
rs1206920304 3031 dbSNP
rs1018357305 3040 dbSNP
rs571610788 3041 dbSNP
rs1006946544 3045 dbSNP
rs1194323537 3046 dbSNP
rs551712102 3050 dbSNP
rs1254904320 3059 dbSNP
rs1474715425 3062 dbSNP
rs976216403 3084 dbSNP
rs904578364 3087 dbSNP
rs1420691607 3088 dbSNP
rs944485003 3091 dbSNP
rs907688146 3101 dbSNP
rs759305645 3104 dbSNP
rs547206189 3106 dbSNP
rs1171590638 3116 dbSNP
rs1043091759 3128 dbSNP
rs780279783 3133 dbSNP
rs1428590812 3138 dbSNP
rs951941684 3139 dbSNP
rs1362458686 3145 dbSNP
rs1216102263 3148 dbSNP
rs1027537365 3151 dbSNP
rs990737509 3154 dbSNP
rs892422548 3157 dbSNP
rs1275156635 3164 dbSNP
rs1426177736 3165 dbSNP
rs1215763396 3170 dbSNP
rs1243165446 3171 dbSNP
rs774007904 3185 dbSNP
rs958671526 3198 dbSNP
rs506731 3199 dbSNP
rs939218615 3205 dbSNP
rs1186383482 3216 dbSNP
rs762956759 3221 dbSNP
rs927787348 3222 dbSNP
rs1165147592 3229 dbSNP
rs1486510975 3230 dbSNP
rs1003353901 3233 dbSNP
rs1398433253 3234 dbSNP
rs1317606440 3244 dbSNP
rs773316429 3251 dbSNP
rs1345700213 3259 dbSNP
rs907306763 3264 dbSNP
rs193042556 3267 dbSNP
rs577994912 3267 dbSNP
rs1234153636 3273 dbSNP
rs947813042 3288 dbSNP
rs1223286024 3290 dbSNP
rs529011159 3290 dbSNP
rs983840999 3291 dbSNP
rs929621404 3295 dbSNP
rs1209280219 3300 dbSNP
rs1281251120 3300 dbSNP
rs1257301166 3308 dbSNP
rs900140442 3316 dbSNP
rs918224766 3319 dbSNP
rs1188277850 3320 dbSNP
rs1369809135 3321 dbSNP
rs505712 3334 dbSNP
rs748193302 3335 dbSNP
rs965575760 3353 dbSNP
rs1157495266 3355 dbSNP
rs1235738631 3363 dbSNP
rs1421474016 3364 dbSNP
rs561509111 3365 dbSNP
rs1040068704 3369 dbSNP
rs1374673350 3373 dbSNP
rs188664309 3374 dbSNP
rs529773305 3380 dbSNP
rs1336470115 3393 dbSNP
rs544085636 3394 dbSNP
rs1441675118 3395 dbSNP
rs1280219029 3400 dbSNP
rs1352886619 3402 dbSNP
rs1382698969 3410 dbSNP
rs968854797 3415 dbSNP
rs527968713 3416 dbSNP
rs565197143 3425 dbSNP
rs1010274572 3433 dbSNP
rs891800869 3436 dbSNP
rs1435720377 3437 dbSNP
rs1180596811 3450 dbSNP
rs768757593 3452 dbSNP
rs1375869058 3462 dbSNP
rs370760576 3468 dbSNP
rs1171726834 3469 dbSNP
rs747314170 3471 dbSNP
rs1394395668 3485 dbSNP
rs545299596 3487 dbSNP
rs959305661 3500 dbSNP
rs1174122587 3501 dbSNP
rs374199688 3502 dbSNP
rs1371984454 3504 dbSNP
rs1170611223 3513 dbSNP
rs780374721 3521 dbSNP
rs576351267 3522 dbSNP
rs947863880 3523 dbSNP
rs562777911 3524 dbSNP
rs1438766290 3528 dbSNP
rs1485528666 3529 dbSNP
rs746332938 3533 dbSNP
rs779417105 3560 dbSNP
rs971878553 3567 dbSNP
rs1339086458 3572 dbSNP
rs1202336178 3577 dbSNP
rs1479815049 3585 dbSNP
rs1191189295 3588 dbSNP
rs1250828072 3589 dbSNP
rs888234451 3592 dbSNP
rs376988148 3599 dbSNP
rs1251774279 3607 dbSNP
rs1454662168 3626 dbSNP
rs1048625887 3630 dbSNP
rs929701409 3638 dbSNP
rs7419 3643 dbSNP
rs976357943 3644 dbSNP
rs574098760 3647 dbSNP
rs1459997088 3649 dbSNP
rs1325303771 3655 dbSNP
rs944322629 3662 dbSNP
rs1389057459 3667 dbSNP
rs1033153767 3679 dbSNP
rs1326246844 3687 dbSNP
rs142110058 3688 dbSNP
rs900779498 3690 dbSNP
rs1319568146 3698 dbSNP
rs1040444131 3699 dbSNP
rs1008598745 3704 dbSNP
rs911457298 3721 dbSNP
rs886106161 3725 dbSNP
rs1211621318 3729 dbSNP
rs1259537308 3738 dbSNP
rs1047487990 3740 dbSNP
rs1193617069 3750 dbSNP
rs752150007 3751 dbSNP
rs920411420 3768 dbSNP
rs554001615 3769 dbSNP
rs1054988834 3771 dbSNP
rs11544221 3778 dbSNP
rs1021763795 3779 dbSNP
rs183250851 3788 dbSNP
rs1384852839 3793 dbSNP
rs1383209235 3794 dbSNP
rs1300440789 3802 dbSNP
rs989306432 3804 dbSNP
rs757287736 3806 dbSNP
rs982443923 3807 dbSNP
rs1292274664 3817 dbSNP
rs1391694712 3828 dbSNP
rs1321838700 3835 dbSNP
rs1246347766 3836 dbSNP
rs956127212 3838 dbSNP
rs971384223 3843 dbSNP
rs149045338 3864 dbSNP
rs1475175781 3871 dbSNP
rs1274863470 3875 dbSNP
rs1002854626 3876 dbSNP
rs1265089636 3877 dbSNP
rs1484554410 3882 dbSNP
rs1187550242 3887 dbSNP
rs988827250 3896 dbSNP
rs1231324249 3905 dbSNP
rs906487053 3909 dbSNP
rs1363230436 3911 dbSNP
rs537763121 3915 dbSNP
rs568817870 3917 dbSNP
rs1023547160 3918 dbSNP
rs767117517 3922 dbSNP
rs1012130121 3925 dbSNP
rs1009580482 3928 dbSNP
rs1397359922 3931 dbSNP
rs1250022138 3935 dbSNP
rs1196633756 3938 dbSNP
rs1304239421 3938 dbSNP
rs1459094935 3940 dbSNP
rs191573284 3943 dbSNP
rs112069016 3946 dbSNP
rs555600976 3955 dbSNP
rs1237775807 3957 dbSNP
rs929727712 3958 dbSNP
rs1335461273 3959 dbSNP
rs1249942379 3973 dbSNP
rs757798350 3974 dbSNP
rs1040711976 3975 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cacacgagAGACCAGUUGGUAg 5'
                  |||  |:|||||| 
Target 5' ------caUCUUAUUAACCAUa 3'
1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55970.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cacacgagAGACCAGUUGGUAg 5'
                  |||  |:|||||| 
Target 5' ------caUCUUAUUAACCAUa 3'
1 - 16
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000370982.3 | 3UTR | CAUCUUAUUAACCAUAAUACUGUGAUCAUUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000370982.3 | 3UTR | CAUCUUAUUAACCAUAAUACUGUGAUCAUUAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000370982.3 | 3UTR | CAUCUUAUUAACCAUAAUACUGUGAUCAUUAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
62 hsa-miR-758-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT085323 MORC3 MORC family CW-type zinc finger 3 2 2
MIRT089441 STAMBP STAM binding protein 2 2
MIRT089456 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT111856 CCND1 cyclin D1 2 2
MIRT184933 ZNF268 zinc finger protein 268 2 2
MIRT215288 CREBRF CREB3 regulatory factor 2 2
MIRT237300 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT238446 MYO10 myosin X 2 4
MIRT273827 RPL41 ribosomal protein L41 2 2
MIRT282703 HOOK1 hook microtubule tethering protein 1 2 2
MIRT347970 ZNF850 zinc finger protein 850 2 2
MIRT371076 KLF3 Kruppel like factor 3 2 2
MIRT464339 USP6NL USP6 N-terminal like 2 2
MIRT470034 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT477506 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT482886 CACNA2D3 calcium voltage-gated channel auxiliary subunit alpha2delta 3 2 2
MIRT492606 POLR3E RNA polymerase III subunit E 2 2
MIRT502294 GNG12 G protein subunit gamma 12 2 6
MIRT507600 DCTN4 dynactin subunit 4 2 4
MIRT510728 SON SON DNA binding protein 2 6
MIRT514065 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 8
MIRT519718 ZNF512B zinc finger protein 512B 2 4
MIRT520890 STRN striatin 2 2
MIRT521760 PPIL1 peptidylprolyl isomerase like 1 2 6
MIRT526874 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT530232 WSB2 WD repeat and SOCS box containing 2 2 2
MIRT532003 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT533371 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 4
MIRT547106 PIGW phosphatidylinositol glycan anchor biosynthesis class W 2 2
MIRT548189 FOXA1 forkhead box A1 2 2
MIRT552935 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT560085 ZNF195 zinc finger protein 195 2 2
MIRT561726 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT562713 ZNF415 zinc finger protein 415 2 2
MIRT562761 ZNF846 zinc finger protein 846 2 2
MIRT564159 ZNF117 zinc finger protein 117 2 2
MIRT565673 SETD5 SET domain containing 5 2 2
MIRT565718 SESN3 sestrin 3 2 2
MIRT566026 RFX1 regulatory factor X1 2 2
MIRT569048 ZNF655 zinc finger protein 655 2 2
MIRT570367 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT570410 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT570443 TMEM189 transmembrane protein 189 2 2
MIRT571738 RNF11 ring finger protein 11 2 2
MIRT575042 Tpgs2 tubulin polyglutamylase complex subunit 2 2 4
MIRT614330 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT617629 RAB3IP RAB3A interacting protein 2 2
MIRT621667 UBE4B ubiquitination factor E4B 2 2
MIRT639906 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT651436 XRCC5 X-ray repair cross complementing 5 2 2
MIRT683853 ZNF208 zinc finger protein 208 2 2
MIRT684841 TPGS2 tubulin polyglutamylase complex subunit 2 2 5
MIRT689347 ZNF83 zinc finger protein 83 2 2
MIRT692492 SPIN4 spindlin family member 4 2 2
MIRT695711 OLA1 Obg like ATPase 1 2 2
MIRT698219 TMEM248 transmembrane protein 248 2 2
MIRT711560 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT712867 TMEM67 transmembrane protein 67 2 2
MIRT722956 TSPAN1 tetraspanin 1 2 2
MIRT723622 SOBP sine oculis binding protein homolog 2 2
MIRT724176 ABCF2 ATP binding cassette subfamily F member 2 2 2
MIRT755363 LMBR1 limb development membrane protein 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-758 Hydroxycamptothecin (HCPT) NULL 97226 Microarray human Tenon's fibroblasts (HTFs) 24681041 2014 down-regulated
miR-758 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 up-regulated
miR-758 5-Fluorouracil approved 3385 Quantitative real-time PCR human squamous cell carcinoma cell line KYSE410 21743970 2011 up-regulated
miR-758 Reversine NULL 210332 Microarray C2C12 myoblast cells 24513286 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-758 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-758 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-758 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-758-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-758-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-758-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-758-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-758-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-758-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-758-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-758-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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