pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GINS4   
Synonyms SLD5
Description GINS complex subunit 4
Transcript NM_032336   
Expression
Putative miRNA Targets on GINS4
3'UTR of GINS4
(miRNA target sites are highlighted)
>GINS4|NM_032336|3'UTR
   1 AACTAGGCATAAACAGCCAGGCATGGTGACTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGA
  81 GGTCAGGAGTTCGAGACCAACCGACCAACATGGTGAAACCCCATCTTTACTAAAAATACAAAATAATTAGCCGGGTGTTG
 161 GTGGTGTGCACCTGTAATCCCAGCTACTCAGGAGGCCGGGGCAGGAGAATCGCTTGAACCTGGGAGCAGGAGGTTGCAGT
 241 GAGCCGAGGTCGTGCCATTGCACTCCAGCCTGGGTGACAGTGAGACTTTGTCTCAAAAAAAAAAACAAAAAACAAAAAAA
 321 AAACAAACTAGGCATAAACTCATGAGGTCAGGAGATCAAGACCATCCTGGCTACTAAACCCCATCTCTACTAAACCCATC
 401 TCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGCCCATCTACTCAGGAGGCTGAGGCAGGAGAATGGTGTGA
 481 ACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGATCGTGCCATTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCATTTCC
 561 AAAAAAAACACACTAGGCGTAAACAAGAATGAAGACCTGGAACCGTAGAGAAAATACTAGAAACCCCTCGTATCACGTTG
 641 TGCCTGAGGACAATAATAAAGTAGTTTACTAGGCATCAGACATTCCTCAGCAGTGCTGTGGGTCACGGGCGTGAAGCGGA
 721 GCTCGAGGCAGGATTGCTTGTGTTGCTGCATGTCCTGTCTGCTGTTTTAGCCCGTGTCAGTAGATGGGGCCATTGTACTG
 801 TTTGTTCTGCACACTTGGCGGAGCAGCAGAGGCTCTCAGCACGCCTTTTCCCTTTGTAGTATTTTCTGAGCTAAGGAAAG
 881 TCAGGCAGAAGTAGTTCATAAGAAGGCATCACTGCCTGTGATCGGGGCTGCATTTAGCCCTGACCTGATAATGGTAGGAG
 961 AGTTCATTTAGCCTTTCTGCTGCGAAGATTGTAAATAGATTAAAGAAAACAGCTGTGGCCTTCTCCCGTCATACATCATT
1041 AGACTGTGTAAACTAACATTTTAGAACCTCTAATATTGGACTTAAAACCAATTTCTGTCGTGCTTAATTGAAAATCACAA
1121 CTAAACCAATAAACCATTATTAAATTTCCATTCTGCAGCAGAAGGCACCTCTGGACGGCTCCCGGCTTGTAGTTTAATGA
1201 AGTATGTGCTCCCTGCTGTTAACCCGCAGCCCTCCCCAACTCTCCAGCAGCTTTGCCAAGTCAGCCTCCGGGCCATCTGG
1281 CTGTCCTTGGCCAAGGCACTGTTAACGGAGTGACGTTAACCATCTTGTATTGTGACCTGTGGCCGCTTTTCTGGTTTAAG
1361 TCCTTCACTTTTTCAAGAGGAATGGATGAAATTAATGTGCATGCAGAGTCTCACAGTGATGCCGGAAGGAAGGATGTATA
1441 GGCAGTGAATGAATGATCTTTCCTTGAAATGCTATAAAAAGCAACCTGCATTCCAGTCTTTTCTTCCTGGTTGAAGTTGG
1521 CAGATTTCCATTTGCAGGGTATGGGCTGCGAGAGTAATCAGGGTAACATTGCTGTCATTTCCAAGAGAAATCAGTAGGGG
1601 AAAGCAAGGGAGGTCTTTTTTTTTTTTCTTTTTTGAGACGGAGTTTCCCTCTTGTTACCCAGGCTGGAGTGGCAGTGGTG
1681 TGAACACGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGTATTATA
1761 GGTGCACACCACCACACCCAACTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCATGATGTTGGCCAAGCTGGTCTCG
1841 AGCTCCTGACCCCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTATAGGCGTGAGCCACTGCGCACGGCCT
1921 GGGGAGGTTTTATTTCTTGACAAAGGTATTTGATACTCGTGCAGTCCCTGGAGGGTCTCACTGGAGAGACAACATTTAGG
2001 CTGAGATCTGATTAACAGGAGGCAGCTGCAGTGCAGAGGTCAAAAGGGAGGGTGTTCCAGGCAGAGAAAACAGCCTGTGC
2081 AAAGGCCCTGAGGCAGAAACAAACTCTACTTGAGGTCAGCCTGGTTAGAAAGCCCAACTCAAAATAGAAAGTATTACATG
2161 ATAAGGTCTGAGGCAGGCTGGACCCAGATCTTACAGGACCTTGTTAATAAGGATCCCATTTGGTCCCCCACAGTCCTGAG
2241 AAGCGGGCAGGGCTGTGGGAAACAGCAGATATTTAGTGGTAAGCCTGAGATCAGAACCCAAGTCTGCACTTCCTAGTCAC
2321 GTTCTCCCTGTAGTGCTAAGCCCAGAGACCTGAGCTGTTAACCTAGAACAGTGTGCTTCCTAAGCCTTAATGTGCATACC
2401 CATCGCCTGGAGCTCGCCTTAAGATGTAGGTTCTGCCTGAAGCCCAAGTTCATTTAGTATGTCATGGTTAATTCAGAGTA
2481 AAATCAAGAGTTAGTACTTGATTTATGCTTGTTATATAAAGAAAGAGACAACTTCACTGTATGATCATTTTGTCACTTTT
2561 CAAAAGCATTTAATTCCCATTCAATTGAAAATGTTTCAAGAACAAACCTGTTTGGTCATTTTATTGATATTGCACATTTG
2641 TATATGAATAAATTTTTGCAAATTAAAAAAAAAAAAGATGTAGGTTCTGAAACAGGGTGAGGTCCAGGATCCTGCCTTTC
2721 TAAGGAGCTCCCATGTTGTGCAGTTGCTGCTGGCCCGGGGACCACATTGAATGACGGCTCTACGTCCTCATGCCTCCAGC
2801 TGCTGCCCTGTACATGTCCAACTGCACGGAGCACTTTACATCCTCTAAAACCACAGTAAATTGCTCCATTTCCTAAATTA
2881 CCTCTTCAAGAGAAGACTGGTTTTGATGTCATTTTTAAATAAAGGAGAAGTTGAATTTCAAAACCAAGTGGAACAGGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucucGUUCUGGGGC--AGAGAUUu 5'
              ||:||:||:|  |:||||| 
Target 5' ggtcCAGGATCCTGCCTTTCTAAg 3'
2701 - 2724 152.00 -19.40
2
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            ||::||||:::||||| || 
Target 5' acAGTGAGACTTTGTCTCAAAa 3'
277 - 298 148.00 -20.50
3
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            | :|| ||||| ||||||  
Target 5' ctACTAA-ACCCCATCTCTAct 3'
371 - 391 147.00 -14.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32059560 30 COSMIC
COSN32059561 35 COSMIC
COSN31587615 37 COSMIC
COSN30446983 46 COSMIC
COSN28602842 48 COSMIC
COSN26977407 61 COSMIC
COSN30494278 63 COSMIC
COSN14343405 64 COSMIC
COSN30119993 73 COSMIC
COSN30109339 96 COSMIC
COSN17980998 145 COSMIC
COSN8084882 154 COSMIC
COSN25921648 267 COSMIC
COSN24151209 797 COSMIC
COSN20105411 1628 COSMIC
COSN20105414 2677 COSMIC
COSN6695838 2830 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1271948802 5 dbSNP
rs1374487703 17 dbSNP
rs764530667 21 dbSNP
rs371762239 22 dbSNP
rs1285028658 23 dbSNP
rs757612756 24 dbSNP
rs779145522 29 dbSNP
rs746068571 31 dbSNP
rs758494264 33 dbSNP
rs1200420992 35 dbSNP
rs779932169 38 dbSNP
rs748130894 42 dbSNP
rs1181562595 45 dbSNP
rs1411825517 48 dbSNP
rs1435901551 51 dbSNP
rs769679898 52 dbSNP
rs1253217550 53 dbSNP
rs978650862 63 dbSNP
rs564157693 64 dbSNP
rs566816336 68 dbSNP
rs1049796376 69 dbSNP
rs1360361592 70 dbSNP
rs1174674920 73 dbSNP
rs758356866 77 dbSNP
rs1436902303 78 dbSNP
rs958180209 85 dbSNP
rs1170417722 90 dbSNP
rs912670265 93 dbSNP
rs552035072 94 dbSNP
rs989681676 98 dbSNP
rs559630833 103 dbSNP
rs769905897 104 dbSNP
rs1211373465 106 dbSNP
rs1037180272 107 dbSNP
rs897320543 110 dbSNP
rs1276832636 111 dbSNP
rs544781957 125 dbSNP
rs1340232904 129 dbSNP
rs1271993008 131 dbSNP
rs1430405550 139 dbSNP
rs1479327446 141 dbSNP
rs1171343884 150 dbSNP
rs1048710498 151 dbSNP
rs1417061980 153 dbSNP
rs1357749445 155 dbSNP
rs548410209 165 dbSNP
rs375830072 180 dbSNP
rs565064639 198 dbSNP
rs533846128 199 dbSNP
rs1362113565 211 dbSNP
rs550559907 212 dbSNP
rs1476531338 214 dbSNP
rs1422858149 225 dbSNP
rs959787192 230 dbSNP
rs1188544681 244 dbSNP
rs1297418404 247 dbSNP
rs1331475869 250 dbSNP
rs1235519182 252 dbSNP
rs1235062393 253 dbSNP
rs1438626021 259 dbSNP
rs940708454 260 dbSNP
rs971990820 264 dbSNP
rs1273024773 266 dbSNP
rs1344160899 267 dbSNP
rs1224445157 276 dbSNP
rs1288225209 279 dbSNP
rs920537769 279 dbSNP
rs1351851805 282 dbSNP
rs1216157155 284 dbSNP
rs201745328 291 dbSNP
rs1269789556 293 dbSNP
rs1453700727 294 dbSNP
rs1463653309 295 dbSNP
rs530634099 295 dbSNP
rs61367318 295 dbSNP
rs924792951 295 dbSNP
rs930468214 295 dbSNP
rs1197141028 296 dbSNP
rs1246669337 299 dbSNP
rs1055590368 300 dbSNP
rs1425476881 300 dbSNP
rs1470368956 300 dbSNP
rs1470783315 301 dbSNP
rs1196948040 303 dbSNP
rs1457420145 304 dbSNP
rs1223785861 306 dbSNP
rs1273871381 306 dbSNP
rs397694706 306 dbSNP
rs1312581490 307 dbSNP
rs13272246 307 dbSNP
rs13273266 308 dbSNP
rs1224708071 309 dbSNP
rs894313793 313 dbSNP
rs13272251 314 dbSNP
rs1395358674 314 dbSNP
rs949795329 314 dbSNP
rs13273273 315 dbSNP
rs1045903336 321 dbSNP
rs1458937784 321 dbSNP
rs1010419382 325 dbSNP
rs1020076653 335 dbSNP
rs968528123 339 dbSNP
rs1381932141 340 dbSNP
rs1177063589 343 dbSNP
rs1253790031 348 dbSNP
rs1193021291 359 dbSNP
rs1390940098 360 dbSNP
rs1487517728 367 dbSNP
rs978639307 374 dbSNP
rs1217094055 377 dbSNP
rs1321300002 380 dbSNP
rs570483475 381 dbSNP
rs954026516 382 dbSNP
rs1352538736 383 dbSNP
rs771470452 384 dbSNP
rs1052680874 396 dbSNP
rs1388036222 399 dbSNP
rs1447408445 402 dbSNP
rs1311641247 412 dbSNP
rs1351604453 415 dbSNP
rs1364834035 415 dbSNP
rs1292934768 429 dbSNP
rs1408554842 431 dbSNP
rs1239445814 439 dbSNP
rs985451175 440 dbSNP
rs1156618237 450 dbSNP
rs912573672 453 dbSNP
rs944099583 454 dbSNP
rs1358688841 458 dbSNP
rs539467415 467 dbSNP
rs553381690 485 dbSNP
rs760000321 486 dbSNP
rs1266759043 492 dbSNP
rs1187675924 500 dbSNP
rs1489565284 504 dbSNP
rs376325304 507 dbSNP
rs367733107 509 dbSNP
rs1438960238 511 dbSNP
rs550448063 512 dbSNP
rs1011166351 515 dbSNP
rs1348992051 516 dbSNP
rs1029132947 526 dbSNP
rs567254742 529 dbSNP
rs1437300428 536 dbSNP
rs906144369 538 dbSNP
rs142568522 539 dbSNP
rs1459100799 540 dbSNP
rs1296212285 541 dbSNP
rs1161305096 542 dbSNP
rs547015614 547 dbSNP
rs1389741114 548 dbSNP
rs1402607202 550 dbSNP
rs1008958353 553 dbSNP
rs1464723496 555 dbSNP
rs1019468549 556 dbSNP
rs1171486666 561 dbSNP
rs1478821968 561 dbSNP
rs962060707 569 dbSNP
rs1333299843 571 dbSNP
rs972510686 571 dbSNP
rs1374509858 573 dbSNP
rs535629077 577 dbSNP
rs1056775225 579 dbSNP
rs895474308 580 dbSNP
rs1009954326 595 dbSNP
rs1020485184 605 dbSNP
rs904361073 606 dbSNP
rs1319357707 607 dbSNP
rs1045466338 618 dbSNP
rs776461978 624 dbSNP
rs924390573 630 dbSNP
rs868560278 631 dbSNP
rs1394003206 637 dbSNP
rs555937898 641 dbSNP
rs150497256 645 dbSNP
rs1398169283 646 dbSNP
rs781189478 652 dbSNP
rs1170663084 657 dbSNP
rs1200856950 659 dbSNP
rs1473417616 664 dbSNP
rs1370634591 668 dbSNP
rs1256748390 673 dbSNP
rs575301217 675 dbSNP
rs1255104473 678 dbSNP
rs953274396 686 dbSNP
rs1009505486 690 dbSNP
rs987798095 691 dbSNP
rs1019580432 696 dbSNP
rs1255592471 697 dbSNP
rs1184963004 699 dbSNP
rs1356970875 707 dbSNP
rs7817629 708 dbSNP
rs564270803 709 dbSNP
rs962479689 716 dbSNP
rs1339634364 717 dbSNP
rs1310320719 718 dbSNP
rs993547349 718 dbSNP
rs749966130 720 dbSNP
rs577601817 721 dbSNP
rs1374870869 725 dbSNP
rs28526226 726 dbSNP
rs1161952509 730 dbSNP
rs766406190 732 dbSNP
rs1381309277 733 dbSNP
rs915852265 736 dbSNP
rs1441176472 737 dbSNP
rs1235909303 738 dbSNP
rs971246730 742 dbSNP
rs1451631694 756 dbSNP
rs1269439491 758 dbSNP
rs937568385 761 dbSNP
rs1057506561 765 dbSNP
rs1286487509 766 dbSNP
rs1241960530 768 dbSNP
rs767765760 774 dbSNP
rs1437340372 775 dbSNP
rs934370689 775 dbSNP
rs1054217266 779 dbSNP
rs559381888 780 dbSNP
rs1341315879 793 dbSNP
rs1361669194 798 dbSNP
rs1220886438 799 dbSNP
rs914215986 813 dbSNP
rs1276670248 814 dbSNP
rs1157612261 820 dbSNP
rs140322227 821 dbSNP
rs1247947278 823 dbSNP
rs889402238 830 dbSNP
rs1218545481 833 dbSNP
rs746813200 833 dbSNP
rs1041446664 834 dbSNP
rs1283873615 840 dbSNP
rs904308856 843 dbSNP
rs1347289041 844 dbSNP
rs999922012 845 dbSNP
rs887760872 851 dbSNP
rs1488395448 860 dbSNP
rs1012898923 867 dbSNP
rs868431185 868 dbSNP
rs1360256603 871 dbSNP
rs1421194063 877 dbSNP
rs552410180 884 dbSNP
rs981388387 892 dbSNP
rs867219225 899 dbSNP
rs1170327619 900 dbSNP
rs1031891958 904 dbSNP
rs1424304119 908 dbSNP
rs1195713757 911 dbSNP
rs1269775658 912 dbSNP
rs756624160 916 dbSNP
rs561933538 924 dbSNP
rs190228011 925 dbSNP
rs752451631 928 dbSNP
rs965389278 930 dbSNP
rs1276720459 933 dbSNP
rs756355942 934 dbSNP
rs550673207 936 dbSNP
rs1302303994 938 dbSNP
rs1450012558 942 dbSNP
rs952748324 943 dbSNP
rs570601585 945 dbSNP
rs1402060652 952 dbSNP
rs1217336595 959 dbSNP
rs1340365348 960 dbSNP
rs777918175 966 dbSNP
rs1450580593 978 dbSNP
rs539438935 984 dbSNP
rs569437410 985 dbSNP
rs58952718 992 dbSNP
rs944921253 998 dbSNP
rs1400384636 1002 dbSNP
rs993090338 1003 dbSNP
rs1464011175 1006 dbSNP
rs1418622605 1020 dbSNP
rs1040644236 1027 dbSNP
rs567014636 1028 dbSNP
rs917511331 1029 dbSNP
rs1230493361 1034 dbSNP
rs1235997193 1035 dbSNP
rs1183195803 1036 dbSNP
rs1278966817 1039 dbSNP
rs192749732 1043 dbSNP
rs183683399 1044 dbSNP
rs1260064394 1045 dbSNP
rs1196766921 1053 dbSNP
rs1049121567 1059 dbSNP
rs1218339750 1061 dbSNP
rs1041335223 1062 dbSNP
rs575414460 1064 dbSNP
rs538086549 1077 dbSNP
rs1269421773 1078 dbSNP
rs1451443078 1080 dbSNP
rs907213461 1082 dbSNP
rs557818624 1083 dbSNP
rs1431342499 1092 dbSNP
rs1003179090 1100 dbSNP
rs376385293 1101 dbSNP
rs888954961 1105 dbSNP
rs188203493 1109 dbSNP
rs1421519486 1128 dbSNP
rs1411356163 1142 dbSNP
rs990014654 1153 dbSNP
rs1157094238 1159 dbSNP
rs1040279269 1177 dbSNP
rs540213327 1178 dbSNP
rs560545472 1182 dbSNP
rs370803320 1184 dbSNP
rs573018454 1185 dbSNP
rs1224421195 1186 dbSNP
rs1295622763 1192 dbSNP
rs1025610412 1193 dbSNP
rs952698331 1208 dbSNP
rs34436103 1211 dbSNP
rs779520362 1214 dbSNP
rs1241244156 1224 dbSNP
rs1034472460 1226 dbSNP
rs1302146705 1227 dbSNP
rs542127700 1230 dbSNP
rs1241612809 1233 dbSNP
rs943737686 1236 dbSNP
rs1283471491 1239 dbSNP
rs772590014 1240 dbSNP
rs993431979 1241 dbSNP
rs1347994989 1244 dbSNP
rs1302317676 1245 dbSNP
rs1420028659 1252 dbSNP
rs1382447894 1255 dbSNP
rs917436398 1264 dbSNP
rs919548068 1270 dbSNP
rs561990628 1271 dbSNP
rs1049180187 1274 dbSNP
rs776019067 1275 dbSNP
rs1487793785 1281 dbSNP
rs145627195 1284 dbSNP
rs1489463793 1293 dbSNP
rs948775937 1296 dbSNP
rs369121109 1299 dbSNP
rs1236428680 1300 dbSNP
rs1315877027 1301 dbSNP
rs544466630 1307 dbSNP
rs11783920 1308 dbSNP
rs1441647359 1315 dbSNP
rs745506202 1316 dbSNP
rs1400424801 1321 dbSNP
rs891753953 1323 dbSNP
rs533070925 1325 dbSNP
rs1453337259 1327 dbSNP
rs910322125 1329 dbSNP
rs1359893217 1330 dbSNP
rs1178362630 1331 dbSNP
rs1429262707 1332 dbSNP
rs944486402 1333 dbSNP
rs1406149194 1335 dbSNP
rs1167424227 1337 dbSNP
rs762583469 1339 dbSNP
rs765785792 1343 dbSNP
rs993379898 1345 dbSNP
rs1049040557 1346 dbSNP
rs1332648703 1357 dbSNP
rs1256187826 1361 dbSNP
rs1007030651 1364 dbSNP
rs1461585534 1369 dbSNP
rs546246074 1381 dbSNP
rs888446202 1382 dbSNP
rs1403026684 1383 dbSNP
rs1019385324 1387 dbSNP
rs11780755 1391 dbSNP
rs1034423008 1399 dbSNP
rs779727608 1402 dbSNP
rs1306425044 1405 dbSNP
rs918255232 1416 dbSNP
rs1372228691 1424 dbSNP
rs1381394351 1424 dbSNP
rs959011127 1425 dbSNP
rs759426531 1431 dbSNP
rs1193345939 1434 dbSNP
rs1405421691 1439 dbSNP
rs1314349465 1440 dbSNP
rs950934314 1443 dbSNP
rs1319716857 1444 dbSNP
rs1371784534 1446 dbSNP
rs1192943628 1448 dbSNP
rs1212788062 1452 dbSNP
rs528912817 1454 dbSNP
rs370370083 1456 dbSNP
rs1183228286 1464 dbSNP
rs967606876 1466 dbSNP
rs767398338 1471 dbSNP
rs1196883894 1473 dbSNP
rs948936534 1475 dbSNP
rs571980534 1476 dbSNP
rs926231973 1478 dbSNP
rs1319943623 1486 dbSNP
rs549638432 1494 dbSNP
rs1340821355 1497 dbSNP
rs569253859 1502 dbSNP
rs928768172 1504 dbSNP
rs752506687 1512 dbSNP
rs910239288 1517 dbSNP
rs538043541 1522 dbSNP
rs1475100713 1528 dbSNP
rs1395001000 1532 dbSNP
rs1171788861 1535 dbSNP
rs944416544 1542 dbSNP
rs975863691 1545 dbSNP
rs755896126 1550 dbSNP
rs764353907 1551 dbSNP
rs1161987772 1555 dbSNP
rs929160302 1569 dbSNP
rs557929860 1572 dbSNP
rs1353416261 1573 dbSNP
rs1242091949 1583 dbSNP
rs1448047368 1593 dbSNP
rs1011472913 1615 dbSNP
rs1248394177 1616 dbSNP
rs1356869051 1616 dbSNP
rs71546397 1616 dbSNP
rs573233128 1621 dbSNP
rs887723360 1622 dbSNP
rs386724818 1626 dbSNP
rs374359655 1627 dbSNP
rs11781554 1628 dbSNP
rs1310206222 1628 dbSNP
rs1359019610 1628 dbSNP
rs1376466493 1629 dbSNP
rs1232495741 1636 dbSNP
rs1056176170 1640 dbSNP
rs1278584533 1640 dbSNP
rs71521530 1641 dbSNP
rs1301705824 1645 dbSNP
rs894485853 1650 dbSNP
rs11780839 1658 dbSNP
rs776660251 1659 dbSNP
rs1006754152 1662 dbSNP
rs1024433695 1668 dbSNP
rs573955593 1669 dbSNP
rs11992492 1671 dbSNP
rs965198240 1681 dbSNP
rs542689700 1688 dbSNP
rs1485451698 1689 dbSNP
rs1287090405 1691 dbSNP
rs1242586387 1692 dbSNP
rs1348729441 1695 dbSNP
rs11541777 1699 dbSNP
rs1025235024 1707 dbSNP
rs1194913927 1713 dbSNP
rs957597018 1714 dbSNP
rs1333365616 1718 dbSNP
rs1281896736 1726 dbSNP
rs986349830 1732 dbSNP
rs749427337 1736 dbSNP
rs1361555749 1740 dbSNP
rs1426224971 1744 dbSNP
rs952399704 1746 dbSNP
rs1402088759 1750 dbSNP
rs142659148 1751 dbSNP
rs965772470 1765 dbSNP
rs1478044465 1778 dbSNP
rs1197178802 1782 dbSNP
rs758842154 1782 dbSNP
rs1426426979 1785 dbSNP
rs1480027729 1785 dbSNP
rs1414575447 1789 dbSNP
rs1445520313 1792 dbSNP
rs575614217 1793 dbSNP
rs1373290547 1802 dbSNP
rs970621983 1805 dbSNP
rs1382824409 1812 dbSNP
rs980333635 1818 dbSNP
rs149822032 1835 dbSNP
rs929111077 1836 dbSNP
rs928796448 1840 dbSNP
rs1324350924 1841 dbSNP
rs1317153636 1843 dbSNP
rs376247605 1852 dbSNP
rs1342148287 1853 dbSNP
rs1428319163 1863 dbSNP
rs1269545343 1864 dbSNP
rs1345584995 1865 dbSNP
rs1407655784 1866 dbSNP
rs1221058259 1872 dbSNP
rs780640721 1873 dbSNP
rs1424195388 1882 dbSNP
rs1188084666 1890 dbSNP
rs564290526 1890 dbSNP
rs937870600 1894 dbSNP
rs1347510378 1896 dbSNP
rs532860700 1900 dbSNP
rs540303671 1901 dbSNP
rs938748541 1910 dbSNP
rs950104440 1912 dbSNP
rs1192871262 1913 dbSNP
rs1046218462 1916 dbSNP
rs1213216158 1917 dbSNP
rs560026811 1918 dbSNP
rs903249904 1919 dbSNP
rs998915606 1921 dbSNP
rs1033103033 1922 dbSNP
rs893314948 1934 dbSNP
rs1192485761 1935 dbSNP
rs528875616 1937 dbSNP
rs1334150686 1942 dbSNP
rs769129963 1944 dbSNP
rs1158888483 1947 dbSNP
rs889744494 1949 dbSNP
rs117925450 1951 dbSNP
rs966078235 1957 dbSNP
rs975800350 1959 dbSNP
rs181383645 1960 dbSNP
rs1163557904 1962 dbSNP
rs1446684105 1963 dbSNP
rs11992589 1966 dbSNP
rs145817047 1976 dbSNP
rs377376530 1977 dbSNP
rs1235145746 1982 dbSNP
rs1438513510 1983 dbSNP
rs1301071970 1984 dbSNP
rs534156808 1991 dbSNP
rs773758366 1995 dbSNP
rs1291057662 2000 dbSNP
rs991127171 2001 dbSNP
rs888097931 2003 dbSNP
rs539692332 2010 dbSNP
rs1312422953 2011 dbSNP
rs949343404 2026 dbSNP
rs1244671647 2028 dbSNP
rs1373413032 2035 dbSNP
rs1240901922 2039 dbSNP
rs1288464246 2043 dbSNP
rs1299885056 2056 dbSNP
rs1351744341 2058 dbSNP
rs1005208022 2066 dbSNP
rs1204965705 2076 dbSNP
rs1353796622 2088 dbSNP
rs1291021226 2093 dbSNP
rs554223331 2098 dbSNP
rs1453902846 2104 dbSNP
rs759033263 2111 dbSNP
rs924619065 2113 dbSNP
rs763917775 2119 dbSNP
rs970294161 2119 dbSNP
rs757244823 2120 dbSNP
rs567695237 2124 dbSNP
rs934712851 2134 dbSNP
rs1054501610 2141 dbSNP
rs980771194 2149 dbSNP
rs536602544 2162 dbSNP
rs556607585 2185 dbSNP
rs1252857607 2195 dbSNP
rs1221272785 2196 dbSNP
rs1453295804 2198 dbSNP
rs80321345 2213 dbSNP
rs544540631 2214 dbSNP
rs114094963 2223 dbSNP
rs775389858 2225 dbSNP
rs1283811700 2226 dbSNP
rs1468266283 2229 dbSNP
rs1363465360 2243 dbSNP
rs998195048 2245 dbSNP
rs62507829 2246 dbSNP
rs950370261 2247 dbSNP
rs911216611 2248 dbSNP
rs1418551268 2250 dbSNP
rs1406817457 2258 dbSNP
rs1426547044 2261 dbSNP
rs942602915 2262 dbSNP
rs1479699926 2270 dbSNP
rs1271174948 2293 dbSNP
rs1268632841 2295 dbSNP
rs540097764 2297 dbSNP
rs1323828212 2299 dbSNP
rs560192628 2300 dbSNP
rs1486003400 2303 dbSNP
rs1005973858 2307 dbSNP
rs1262081542 2311 dbSNP
rs1213081894 2317 dbSNP
rs1016045981 2319 dbSNP
rs959454901 2321 dbSNP
rs1393586185 2322 dbSNP
rs990640548 2327 dbSNP
rs1343505519 2340 dbSNP
rs1282426472 2342 dbSNP
rs1382537020 2343 dbSNP
rs917763751 2351 dbSNP
rs1447661146 2356 dbSNP
rs1352803575 2357 dbSNP
rs1046789387 2367 dbSNP
rs1453222179 2368 dbSNP
rs888233937 2370 dbSNP
rs970634277 2371 dbSNP
rs573654784 2378 dbSNP
rs1468712518 2386 dbSNP
rs542177754 2387 dbSNP
rs1023221411 2391 dbSNP
rs763842549 2392 dbSNP
rs1430631118 2394 dbSNP
rs1263465341 2395 dbSNP
rs1184390009 2396 dbSNP
rs1485295165 2399 dbSNP
rs1243219610 2400 dbSNP
rs934699621 2405 dbSNP
rs1334262697 2406 dbSNP
rs1238596726 2410 dbSNP
rs1227952854 2414 dbSNP
rs865859979 2416 dbSNP
rs1293787550 2417 dbSNP
rs1381870438 2425 dbSNP
rs1383729143 2426 dbSNP
rs13265966 2432 dbSNP
rs1036378596 2435 dbSNP
rs1406044107 2436 dbSNP
rs960223344 2444 dbSNP
rs1463900928 2448 dbSNP
rs531858358 2452 dbSNP
rs914685625 2454 dbSNP
rs1020379996 2466 dbSNP
rs1385431242 2473 dbSNP
rs943459923 2477 dbSNP
rs1273146188 2478 dbSNP
rs551637322 2479 dbSNP
rs1459577900 2489 dbSNP
rs1242521488 2490 dbSNP
rs902011405 2504 dbSNP
rs1196302645 2509 dbSNP
rs997744418 2515 dbSNP
rs978849854 2517 dbSNP
rs527648746 2522 dbSNP
rs1226357207 2530 dbSNP
rs1360475676 2533 dbSNP
rs1317388511 2543 dbSNP
rs1243932512 2544 dbSNP
rs1382104724 2548 dbSNP
rs565475091 2568 dbSNP
rs557748072 2570 dbSNP
rs757441415 2578 dbSNP
rs1297999991 2585 dbSNP
rs547676638 2586 dbSNP
rs552585839 2598 dbSNP
rs922543604 2601 dbSNP
rs1165075147 2607 dbSNP
rs1307395531 2608 dbSNP
rs1442314444 2616 dbSNP
rs536758795 2631 dbSNP
rs1181832039 2633 dbSNP
rs1420831531 2640 dbSNP
rs78784692 2643 dbSNP
rs909724219 2645 dbSNP
rs375270076 2652 dbSNP
rs1490445974 2653 dbSNP
rs1466063862 2660 dbSNP
rs62507830 2664 dbSNP
rs11322129 2665 dbSNP
rs1220528232 2665 dbSNP
rs1241209139 2665 dbSNP
rs1306892734 2665 dbSNP
rs1334556339 2665 dbSNP
rs1358906718 2665 dbSNP
rs76038532 2665 dbSNP
rs76140545 2666 dbSNP
rs1406000127 2672 dbSNP
rs1301606148 2677 dbSNP
rs1367844847 2677 dbSNP
rs1394427345 2681 dbSNP
rs1389506253 2694 dbSNP
rs1024777393 2700 dbSNP
rs971002603 2703 dbSNP
rs28669791 2704 dbSNP
rs1362040432 2706 dbSNP
rs1181345655 2711 dbSNP
rs1480676796 2726 dbSNP
rs148942172 2731 dbSNP
rs1231890139 2732 dbSNP
rs7815411 2735 dbSNP
rs1451272262 2736 dbSNP
rs1319286014 2741 dbSNP
rs1221006325 2742 dbSNP
rs990078181 2749 dbSNP
rs1348618737 2750 dbSNP
rs1250061358 2757 dbSNP
rs577903255 2758 dbSNP
rs1194695109 2760 dbSNP
rs943428359 2764 dbSNP
rs1347876970 2767 dbSNP
rs1057373345 2768 dbSNP
rs1404679028 2776 dbSNP
rs533944377 2777 dbSNP
rs1318540736 2780 dbSNP
rs975239417 2784 dbSNP
rs1382132832 2785 dbSNP
rs758501750 2793 dbSNP
rs185666584 2800 dbSNP
rs1470263798 2804 dbSNP
rs1431283715 2808 dbSNP
rs6998394 2814 dbSNP
rs542336773 2815 dbSNP
rs1047996683 2816 dbSNP
rs138183343 2822 dbSNP
rs575617556 2828 dbSNP
rs1461574731 2829 dbSNP
rs1247506960 2831 dbSNP
rs754316650 2844 dbSNP
rs1173205061 2846 dbSNP
rs968892506 2855 dbSNP
rs1204332996 2874 dbSNP
rs1326322332 2879 dbSNP
rs1261779849 2881 dbSNP
rs1404684633 2883 dbSNP
rs1000262073 2900 dbSNP
rs942278519 2909 dbSNP
rs1312728724 2920 dbSNP
rs1037333335 2921 dbSNP
rs1324257195 2921 dbSNP
rs1319328186 2923 dbSNP
rs1452674617 2927 dbSNP
rs894814036 2934 dbSNP
rs1334596597 2935 dbSNP
rs1413767343 2936 dbSNP
rs964069215 2937 dbSNP
rs761457303 2942 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84296.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCGU--UCUGGGGCAGAGAUUu 5'
            ||||    || :|  |||||| 
Target 5' ggAGCACUUUACAUC--CUCUAAa 3'
12 - 33
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84296.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000523277.2 | 3UTR | UCCAACUGCACGGAGCACUUUACAUCCUCUAAAACCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000523277.2 | 3UTR | UCCAACUGCACGGAGCACUUUACAUCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.676 2.0e-4 0.653 3.7e-4 23 Click to see details
GSE38226 Liver fibrosis 0.566 3.7e-3 0.204 1.9e-1 21 Click to see details
GSE28260 Renal cortex and medulla -0.525 3.3e-2 -0.467 5.4e-2 13 Click to see details
GSE32688 Pancreatic cancer 0.278 6.2e-2 0.252 8.2e-2 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.08 3.6e-1 -0.010 4.8e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.049 4.1e-1 0.091 3.3e-1 25 Click to see details
GSE28544 Breast cancer 0 5.0e-1 0.055 4.0e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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