miRTarBase - #MIRT503902


—
pre-miRNA Information
pre-miRNA hsa-mir-3119-1   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3119-2   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3119
Sequence 9| UGGCUUUUAACUUUGAUGGC |28
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs976695651 1 dbSNP
rs924732934 1 dbSNP
rs537840374 2 dbSNP
rs1264087496 6 dbSNP
rs1484055858 9 dbSNP
rs1467832924 10 dbSNP
rs1198335970 11 dbSNP
rs1431115212 12 dbSNP
rs1176953550 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ZSCAN25   
Synonyms ZNF498
Description zinc finger and SCAN domain containing 25
Transcript NM_145115   
Expression
Putative miRNA Targets on ZSCAN25
3'UTR of ZSCAN25
(miRNA target sites are highlighted)		 
>ZSCAN25|NM_145115|3'UTR
   1 GCATAGCAGGTGGCAGGCAGCACCATCATTCATCTTTCTCACTGCAGGGCCTTGCGGGGTGCAAGGTGATGGCTGCAGGA
  81 AAGCACTGGTCCCATCGCCTTCCCACCCATTCGCCAACGCGGGAAAGGCAAGGCCTGGCTTACTTAGAGCTTCCAGAGAG
 161 CATAGCTGCTTCCATCTCTTACCCAAGTGGTGCTAAACAATTTTTCTTCCAATGTTTGAGGGAAGCAGTCTCCTGCGGTT
 241 CAGTTCAGGCTGAGATTTTCTCCTTCAGTGGACTGTCTGTGTCCCCCTGCCGAACAAAGCTGGGAGTAAAGGCAAAACCT
 321 TGACACGTGTTGGTAGCTGGGACCTCATCTTCCTGAGGGCTCTGTCTTGCCTGCAGGGTCATAGCTCAGACTCTTCCCCC
 401 ACCCCCTCTCTTTTCCATTGAACAAACATTTATTGAACATCCTCTGAGCACCTGGCCGTGGGAATGCCGTGGTGAATGAG
 481 AGACTAGACGTGATGCCTCTGGGGGTTGTGCGTTGGGGATGCATGCGACAGCCCATGACCCGAGGCATTCTCAGGGTATC
 561 TGTGCTGTGTGCCCGTGAGAACATCTTCCCATGACCACTCCTGCCCTCCTGCCCCGTGCTGGATCTTCCCTCCCCAGCTG
 641 GGATCTGCTCCCAGGCAACTGTGTGAATTTTACATTATTTGGAGCCTCATCTGTGTCAGGCTATAACATTCTATCCTCAT
 721 CTGTAAAACTTCCCCGTCCATTATTCCTTGCACTATAACAACTGTCAACACACCAACTATTAGGAAGTTAGTATTTTGCT
 801 ATTGATCACTGAATAAACATCAGAGTATTTTAAAAAACAGTTCTCTAGAAAGAACTGTTATAATTAAAATGAGTCTGAAA
 881 GATGAACTCTAGTATTAATGCCCTATATTTGATGGCACTTTATAGTTCATAAAATTAATTTCACCCCATTCTCATTGGAC
 961 CCATTTCCCAAGTATTTATTGAGGCCCTGTAACAAACATGTCAGGAACTCTTCTGGGTGCTTGAGACACATCCATGAATA
1041 AAATAGGGGGAGAAGCTGTTGACCTCGTAGAGCTTATGTCTCGTGGATGTACCTGATCTTCAGAACCCGTGGATATTCCT
1121 GCAAATCCTCTGGGCCTGTATTCATTGCTTTGTCAGCATCTTGCCCTGAAATGCATTTGTCACCTACCTCTTGTTACTAA
1201 ATGGTCTCTGCCCTCCAGACCCTTGTCATCCAAGGCACTAGGGGTCCTGGACACCCACTGGGGATGATGAGCTGGTAGCG
1281 ACCTGTTTTGCATGAGTGCCAAGTCAGGAAAAATAAAGATATTTGTAGGCATTAAAAAAAAATACATTTCTTTAAAAATG
1361 AGAAGATGCAATATTTGTAAACTGTTGAAGCTTCCTTATTGTGCCATCACTTAAGGGTTTCATTTCTGTTTAAAGTTCTG
1441 GAAGCTGCATAACTAGCGTGGACTGACTGCTGTGTCATTGTGCTGTGCCTTTGAACCCTGGCTGAGTGAGTGAGTTTGTC
1521 CTTTGTTGATAGTGTCCTATAATTGCAAAATGTGGTTTGTCTTCTGATGCCTCTTAATACCAGATTCTTTTACTGAGATT
1601 TTTTTTTTTCATTTTCCATTGTAAATAAGGTAAATGGTAATGACTAACACAAAGCTGTATTACTCAGCCCACTTTGAAAC
1681 GTGGTTTTATCACCTGTTCTTGTTAGGCAGCATGGTGTCTAATTTTGGCTTAGCAAATGACGCTCCTTGGTCTTCCTGGC
1761 TCATTAGCTGTGCCCACGAGGCTGCACTGACTGGGTCGTAAATGTATCTGAGATGTCCACACGGGGCTGCTGCTGCTCCT
1841 CTGTAATACTGAGGTCCACATGCAAAATCAGCTTTTTTTCCCCCGTAATTATCAGAGCAGCTAGGCAGGGCTGACAGCCA
1921 GGCAGACTCAGTGGGAGGCTTCTGGCCTGAGTGTGGCCTTCCCCAGAGGGTGGTTTTCCAAAGGCAGGTGGGGACTGGGG
2001 AGGCCTCGGGGGGCTGCTTGTCATTACCTGAATCACAGATGCTCTTTTGTCATACACAGCCAGCATTCCTCTGGGTTTCA
2081 GCAAGTTGGCATATCTTAAGCTTCAGAAGGAGCTGGGCCTTGCTGACTTTCCTATCTGGCCTCTTCCCTATCTCCTGTGG
2161 GGCCAAGAGCTTAGGACAGTGTCTCAGAAAAGCCTCTAAGTAGGGGGTTTTTCCCATGGGATTGTGGTAGTCTGATTTTT
2241 CATATCTATTCAAATGTTAAGAAATATTTTGTTTTCTGTATTTTTCTATTCTTTAGAAATTTTTTTATAATAGATAATTT
2321 CAAACCTATATAAATAAATCCTTATGTATTTATCATTTGACTTTATTATAAACTCATAATCAATCTTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgGUAGUUUCAAUUUUCGGu 5'
            ::||  ||  ||||||| 
Target 5' agTGTCTCAG--AAAAGCCt 3'
 2178 - 2195 146.00 -9.60
2 
miRNA  3' cgguAGUUUCA--AUUUUCGGu 5'
              |:|||||  |::||||: 
Target 5' ctgtTTAAAGTTCTGGAAGCTg 3'
 1426 - 1447 118.00 -8.00
3 
miRNA  3' cggUAGUUUC-A-----AUUUUCGgu 5'
             | ||||| |     ||||:||  
Target 5' ccgAACAAAGCTGGGAGTAAAGGCaa 3'
 290 - 315 117.00 -8.83
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31518949 57 COSMIC
COSN18719540 98 COSMIC
COSN32056155 114 COSMIC
COSN9518619 227 COSMIC
COSN24141972 238 COSMIC
COSN8050091 238 COSMIC
COSN9518620 338 COSMIC
COSN4936191 463 COSMIC
COSN32072890 638 COSMIC
COSN9518621 672 COSMIC
COSN19203872 862 COSMIC
COSN19060223 906 COSMIC
COSN28467755 1343 COSMIC
COSN20922241 1477 COSMIC
COSN29071846 1610 COSMIC
COSN15669999 1760 COSMIC
COSN19564436 2202 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1269581313 5 dbSNP
rs1297579407 12 dbSNP
rs771187395 18 dbSNP
rs1186458007 20 dbSNP
rs377441582 21 dbSNP
rs371743621 26 dbSNP
rs759672798 32 dbSNP
rs964450362 35 dbSNP
rs1473529474 37 dbSNP
rs377191506 41 dbSNP
rs1184042386 42 dbSNP
rs1410424431 43 dbSNP
rs1457003006 48 dbSNP
rs545636580 50 dbSNP
rs754689243 51 dbSNP
rs1412961526 52 dbSNP
rs1382304709 56 dbSNP
rs1401298747 57 dbSNP
rs1401151516 66 dbSNP
rs1308444226 67 dbSNP
rs560776712 70 dbSNP
rs1431498578 74 dbSNP
rs916580409 77 dbSNP
rs974549515 78 dbSNP
rs1344492550 83 dbSNP
rs1028219611 88 dbSNP
rs952223339 89 dbSNP
rs1046903794 90 dbSNP
rs1369751357 92 dbSNP
rs528032849 97 dbSNP
rs1422881899 98 dbSNP
rs1251636222 101 dbSNP
rs1295120775 107 dbSNP
rs1274552230 110 dbSNP
rs1223966718 113 dbSNP
rs908084467 119 dbSNP
rs918709331 120 dbSNP
rs188734115 121 dbSNP
rs1290496281 122 dbSNP
rs1411392617 124 dbSNP
rs1348471672 127 dbSNP
rs34572337 131 dbSNP
rs1378493456 134 dbSNP
rs1392172467 136 dbSNP
rs761818342 145 dbSNP
rs1284220246 162 dbSNP
rs112411739 167 dbSNP
rs193003275 173 dbSNP
rs185859003 174 dbSNP
rs1471809881 175 dbSNP
rs569009126 175 dbSNP
rs903952199 177 dbSNP
rs1274268825 183 dbSNP
rs935817497 188 dbSNP
rs1453866629 189 dbSNP
rs147913728 194 dbSNP
rs1209297003 201 dbSNP
rs1351543438 207 dbSNP
rs1191997185 209 dbSNP
rs891716284 210 dbSNP
rs1008854815 211 dbSNP
rs748556844 212 dbSNP
rs551590307 213 dbSNP
rs1405855653 214 dbSNP
rs1385734214 225 dbSNP
rs1398922945 232 dbSNP
rs566424840 233 dbSNP
rs1030479021 234 dbSNP
rs767457984 236 dbSNP
rs1395020485 237 dbSNP
rs1460679514 238 dbSNP
rs1027378816 242 dbSNP
rs1376395058 244 dbSNP
rs374577314 245 dbSNP
rs1401976360 250 dbSNP
rs1249995927 252 dbSNP
rs999698598 263 dbSNP
rs1278480681 264 dbSNP
rs1267201376 270 dbSNP
rs1005012022 272 dbSNP
rs1219561533 273 dbSNP
rs1272992262 276 dbSNP
rs1346945747 276 dbSNP
rs1230584542 277 dbSNP
rs1365208828 280 dbSNP
rs773547517 287 dbSNP
rs141654341 288 dbSNP
rs187594291 292 dbSNP
rs992396945 293 dbSNP
rs916561536 304 dbSNP
rs879071248 320 dbSNP
rs1416512610 325 dbSNP
rs115725210 327 dbSNP
rs979852114 328 dbSNP
rs1392054129 336 dbSNP
rs925355063 344 dbSNP
rs1438655092 356 dbSNP
rs935455766 363 dbSNP
rs747569036 365 dbSNP
rs918601444 385 dbSNP
rs930038482 386 dbSNP
rs1212587764 391 dbSNP
rs1052952370 401 dbSNP
rs147049372 403 dbSNP
rs1473810097 404 dbSNP
rs552542212 406 dbSNP
rs941906745 406 dbSNP
rs1225507335 407 dbSNP
rs555988339 409 dbSNP
rs1363911349 419 dbSNP
rs578093416 420 dbSNP
rs1038908596 424 dbSNP
rs1189999356 426 dbSNP
rs1418409457 430 dbSNP
rs73408528 432 dbSNP
rs1040291706 441 dbSNP
rs1430898530 447 dbSNP
rs1372922920 458 dbSNP
rs78919085 459 dbSNP
rs1429174085 463 dbSNP
rs995822605 470 dbSNP
rs1410246960 474 dbSNP
rs1327747599 478 dbSNP
rs1352269581 484 dbSNP
rs572756409 485 dbSNP
rs1235472850 487 dbSNP
rs999270806 491 dbSNP
rs1032135906 502 dbSNP
rs1049206850 512 dbSNP
rs887531626 513 dbSNP
rs1005073228 514 dbSNP
rs1289976831 518 dbSNP
rs1416015149 524 dbSNP
rs1314053558 527 dbSNP
rs1015032010 528 dbSNP
rs1012451191 536 dbSNP
rs1410787037 538 dbSNP
rs1355329223 542 dbSNP
rs138489035 543 dbSNP
rs1280533991 547 dbSNP
rs1350505159 553 dbSNP
rs563250608 555 dbSNP
rs1214267589 556 dbSNP
rs1271078046 559 dbSNP
rs1403726629 561 dbSNP
rs1444207292 565 dbSNP
rs1413306515 574 dbSNP
rs1160270203 576 dbSNP
rs141037110 583 dbSNP
rs1258166946 584 dbSNP
rs1179841255 597 dbSNP
rs150279026 598 dbSNP
rs1223094063 599 dbSNP
rs979456161 613 dbSNP
rs542478685 616 dbSNP
rs1228641364 617 dbSNP
rs951494385 619 dbSNP
rs956801269 621 dbSNP
rs984167253 630 dbSNP
rs138943893 633 dbSNP
rs1434396993 637 dbSNP
rs1349432634 649 dbSNP
rs912669813 652 dbSNP
rs532684236 654 dbSNP
rs1459022737 659 dbSNP
rs1166964687 660 dbSNP
rs1416897857 672 dbSNP
rs112539702 680 dbSNP
rs374546423 680 dbSNP
rs1173771897 682 dbSNP
rs1418334548 682 dbSNP
rs1425746016 684 dbSNP
rs944494312 689 dbSNP
rs1040240044 691 dbSNP
rs1487187180 694 dbSNP
rs753368531 706 dbSNP
rs149468913 709 dbSNP
rs1465993440 714 dbSNP
rs1265913342 716 dbSNP
rs1048714184 718 dbSNP
rs1313225111 735 dbSNP
rs887467596 736 dbSNP
rs902176333 737 dbSNP
rs940431939 756 dbSNP
rs1268673975 762 dbSNP
rs1350266240 764 dbSNP
rs566361939 770 dbSNP
rs1298457256 777 dbSNP
rs1437481095 778 dbSNP
rs1053521557 781 dbSNP
rs778240203 788 dbSNP
rs368887974 802 dbSNP
rs1320191196 803 dbSNP
rs866101444 806 dbSNP
rs896251200 814 dbSNP
rs1013671108 822 dbSNP
rs1178061815 825 dbSNP
rs1023801006 826 dbSNP
rs1012021647 832 dbSNP
rs1345794105 833 dbSNP
rs1045196815 839 dbSNP
rs750269750 841 dbSNP
rs1483751500 849 dbSNP
rs1263676545 858 dbSNP
rs1001554820 862 dbSNP
rs1276030230 874 dbSNP
rs1003791037 883 dbSNP
rs1026355945 885 dbSNP
rs1455337277 890 dbSNP
rs1032327231 894 dbSNP
rs1396834104 899 dbSNP
rs371091015 906 dbSNP
rs956898545 908 dbSNP
rs1464400226 909 dbSNP
rs1374743961 910 dbSNP
rs1005536718 916 dbSNP
rs1016901784 919 dbSNP
rs988154909 923 dbSNP
rs964072996 925 dbSNP
rs1394013810 928 dbSNP
rs1191939973 933 dbSNP
rs1424059096 934 dbSNP
rs1432261524 935 dbSNP
rs975469855 945 dbSNP
rs921782811 958 dbSNP
rs527547094 960 dbSNP
rs145942665 962 dbSNP
rs1253159772 964 dbSNP
rs1207992376 967 dbSNP
rs1340067323 970 dbSNP
rs987389398 971 dbSNP
rs923884879 975 dbSNP
rs935249835 979 dbSNP
rs1386264553 991 dbSNP
rs1412701736 992 dbSNP
rs1053427231 996 dbSNP
rs1308502248 998 dbSNP
rs1411594660 1001 dbSNP
rs914914220 1003 dbSNP
rs561095022 1015 dbSNP
rs1458010494 1021 dbSNP
rs1400516189 1027 dbSNP
rs947750997 1035 dbSNP
rs1162340450 1045 dbSNP
rs1373613052 1049 dbSNP
rs1475077177 1052 dbSNP
rs1045251769 1058 dbSNP
rs965455337 1059 dbSNP
rs1482374391 1061 dbSNP
rs1250500234 1062 dbSNP
rs1210477427 1067 dbSNP
rs1489547109 1068 dbSNP
rs1004142184 1078 dbSNP
rs566875775 1079 dbSNP
rs537452846 1083 dbSNP
rs756079898 1084 dbSNP
rs192774700 1087 dbSNP
rs887330042 1088 dbSNP
rs1333882451 1089 dbSNP
rs1328142174 1108 dbSNP
rs753442374 1109 dbSNP
rs1392328043 1116 dbSNP
rs571251697 1120 dbSNP
rs1241221053 1125 dbSNP
rs1460597607 1132 dbSNP
rs183937893 1135 dbSNP
rs1262442790 1138 dbSNP
rs985134469 1149 dbSNP
rs909148005 1157 dbSNP
rs1204449322 1164 dbSNP
rs1161800232 1165 dbSNP
rs1281971012 1176 dbSNP
rs1363724978 1176 dbSNP
rs940330562 1184 dbSNP
rs757731252 1187 dbSNP
rs964019523 1190 dbSNP
rs1434926269 1201 dbSNP
rs1265369246 1207 dbSNP
rs1035992458 1209 dbSNP
rs1465529805 1215 dbSNP
rs996941157 1237 dbSNP
rs763330656 1238 dbSNP
rs1030186076 1252 dbSNP
rs1210323263 1265 dbSNP
rs1251919997 1273 dbSNP
rs1278869943 1275 dbSNP
rs954557436 1276 dbSNP
rs1332252376 1280 dbSNP
rs1300660531 1286 dbSNP
rs1452066895 1288 dbSNP
rs896239821 1303 dbSNP
rs1183291960 1305 dbSNP
rs1388877641 1311 dbSNP
rs548926339 1316 dbSNP
rs1399313076 1321 dbSNP
rs1363854788 1324 dbSNP
rs1173607350 1327 dbSNP
rs35306541 1334 dbSNP
rs759797931 1334 dbSNP
rs987683518 1334 dbSNP
rs1193060370 1344 dbSNP
rs1450208053 1345 dbSNP
rs1045199000 1350 dbSNP
rs905384911 1351 dbSNP
rs1186971906 1366 dbSNP
rs878995054 1371 dbSNP
rs1001060013 1378 dbSNP
rs1200922100 1380 dbSNP
rs1347011013 1384 dbSNP
rs572696041 1400 dbSNP
rs866803299 1404 dbSNP
rs914902907 1407 dbSNP
rs1157338924 1419 dbSNP
rs1365367909 1423 dbSNP
rs1032979652 1425 dbSNP
rs1462229935 1429 dbSNP
rs947740952 1435 dbSNP
rs754599171 1458 dbSNP
rs1335303223 1459 dbSNP
rs1009532286 1462 dbSNP
rs1416563406 1470 dbSNP
rs1374141009 1472 dbSNP
rs1173630125 1480 dbSNP
rs1430468360 1481 dbSNP
rs1392114865 1482 dbSNP
rs1166303193 1493 dbSNP
rs188413695 1497 dbSNP
rs965445297 1498 dbSNP
rs1307845496 1500 dbSNP
rs1255303192 1503 dbSNP
rs975522727 1537 dbSNP
rs1335240704 1540 dbSNP
rs1342174289 1542 dbSNP
rs138505186 1543 dbSNP
rs887277748 1544 dbSNP
rs778574735 1546 dbSNP
rs953308293 1551 dbSNP
rs1038621364 1557 dbSNP
rs899828544 1566 dbSNP
rs1450622807 1567 dbSNP
rs997286298 1571 dbSNP
rs1029678039 1572 dbSNP
rs891182700 1581 dbSNP
rs984652718 1582 dbSNP
rs909086095 1583 dbSNP
rs998953561 1588 dbSNP
rs1409495839 1589 dbSNP
rs1214049494 1590 dbSNP
rs1165279394 1591 dbSNP
rs1030805757 1598 dbSNP
rs956560629 1598 dbSNP
rs1022245109 1599 dbSNP
rs1234584201 1599 dbSNP
rs989393591 1599 dbSNP
rs1201783562 1600 dbSNP
rs969067048 1602 dbSNP
rs1272178867 1605 dbSNP
rs980816673 1606 dbSNP
rs1197153857 1610 dbSNP
rs1250702742 1611 dbSNP
rs141661809 1612 dbSNP
rs1436661213 1616 dbSNP
rs1180286127 1617 dbSNP
rs1420597572 1618 dbSNP
rs146202635 1619 dbSNP
rs1164717600 1622 dbSNP
rs1297034189 1630 dbSNP
rs940612875 1632 dbSNP
rs1441551503 1639 dbSNP
rs1416100992 1640 dbSNP
rs1463781934 1651 dbSNP
rs1350554725 1664 dbSNP
rs1298946154 1667 dbSNP
rs1325705472 1668 dbSNP
rs747826547 1672 dbSNP
rs1391955785 1677 dbSNP
rs971699325 1681 dbSNP
rs1472817002 1692 dbSNP
rs565307406 1694 dbSNP
rs148464501 1707 dbSNP
rs1469126947 1715 dbSNP
rs1246787505 1716 dbSNP
rs1233804477 1718 dbSNP
rs1038578029 1735 dbSNP
rs1466875200 1741 dbSNP
rs58895239 1742 dbSNP
rs559886369 1743 dbSNP
rs565457318 1745 dbSNP
rs926406070 1752 dbSNP
rs527486276 1756 dbSNP
rs534376318 1763 dbSNP
rs999337250 1764 dbSNP
rs567439821 1778 dbSNP
rs1486307305 1780 dbSNP
rs1187854760 1785 dbSNP
rs771529820 1786 dbSNP
rs1041052732 1792 dbSNP
rs3735453 1793 dbSNP
rs1171403371 1794 dbSNP
rs549490230 1798 dbSNP
rs1460550408 1809 dbSNP
rs969686603 1809 dbSNP
rs1175659968 1823 dbSNP
rs1376116521 1824 dbSNP
rs1028795980 1825 dbSNP
rs1415397289 1826 dbSNP
rs952833658 1830 dbSNP
rs571256737 1833 dbSNP
rs76174519 1838 dbSNP
rs961925801 1839 dbSNP
rs971980671 1840 dbSNP
rs917852649 1844 dbSNP
rs1313279576 1845 dbSNP
rs775804497 1846 dbSNP
rs763280142 1848 dbSNP
rs1232171569 1851 dbSNP
rs970339437 1859 dbSNP
rs1370412714 1861 dbSNP
rs769997629 1863 dbSNP
rs767150601 1870 dbSNP
rs1277353615 1871 dbSNP
rs773124840 1874 dbSNP
rs1437551568 1880 dbSNP
rs1363765373 1884 dbSNP
rs941128010 1885 dbSNP
rs1359640166 1887 dbSNP
rs553933933 1892 dbSNP
rs1432261633 1902 dbSNP
rs1393964130 1904 dbSNP
rs921446260 1905 dbSNP
rs936474484 1915 dbSNP
rs932863644 1918 dbSNP
rs1259294227 1919 dbSNP
rs566234274 1924 dbSNP
rs1483823566 1925 dbSNP
rs912552151 1934 dbSNP
rs934701826 1937 dbSNP
rs914100747 1948 dbSNP
rs1275475967 1952 dbSNP
rs1261445061 1954 dbSNP
rs1447936380 1965 dbSNP
rs1229821656 1968 dbSNP
rs1305961460 1972 dbSNP
rs1295175699 1979 dbSNP
rs1213768169 1985 dbSNP
rs1355870785 1988 dbSNP
rs1053180622 1989 dbSNP
rs1412893646 2006 dbSNP
rs142604702 2008 dbSNP
rs1195731528 2009 dbSNP
rs1463108941 2014 dbSNP
rs150600952 2016 dbSNP
rs901436376 2021 dbSNP
rs1169374392 2030 dbSNP
rs756406052 2031 dbSNP
rs1420475384 2038 dbSNP
rs997214980 2040 dbSNP
rs1485643158 2041 dbSNP
rs139616353 2048 dbSNP
rs551811467 2053 dbSNP
rs1357304583 2054 dbSNP
rs1479736518 2056 dbSNP
rs1005666715 2066 dbSNP
rs1016035412 2074 dbSNP
rs766696230 2082 dbSNP
rs961831392 2084 dbSNP
rs993305374 2087 dbSNP
rs1455260455 2092 dbSNP
rs1289269067 2096 dbSNP
rs1024815622 2106 dbSNP
rs1245802743 2109 dbSNP
rs1002521466 2120 dbSNP
rs11734 2126 dbSNP
rs980843069 2132 dbSNP
rs1432522381 2135 dbSNP
rs926343789 2137 dbSNP
rs1371098164 2144 dbSNP
rs958014474 2151 dbSNP
rs1277146517 2155 dbSNP
rs989267873 2156 dbSNP
rs1397075295 2158 dbSNP
rs1217094028 2162 dbSNP
rs1475107420 2166 dbSNP
rs1413337760 2167 dbSNP
rs1003808015 2185 dbSNP
rs1417329061 2186 dbSNP
rs753312641 2189 dbSNP
rs754441521 2191 dbSNP
rs962399324 2194 dbSNP
rs879581917 2195 dbSNP
rs35292509 2197 dbSNP
rs1215807243 2200 dbSNP
rs1333970744 2203 dbSNP
rs1261175663 2205 dbSNP
rs945496869 2206 dbSNP
rs1441066479 2208 dbSNP
rs921426233 2208 dbSNP
rs976925454 2208 dbSNP
rs987441431 2209 dbSNP
rs922807581 2215 dbSNP
rs1323557970 2217 dbSNP
rs764743719 2222 dbSNP
rs1189592673 2230 dbSNP
rs932955531 2235 dbSNP
rs1386141810 2236 dbSNP
rs1050181142 2243 dbSNP
rs888480187 2249 dbSNP
rs181270748 2251 dbSNP
rs1363777216 2255 dbSNP
rs1199635868 2263 dbSNP
rs577188796 2267 dbSNP
rs768828848 2269 dbSNP
rs1193262237 2271 dbSNP
rs1387652551 2272 dbSNP
rs1206768333 2289 dbSNP
rs914578744 2289 dbSNP
rs1327538004 2293 dbSNP
rs1260113002 2295 dbSNP
rs1234377507 2298 dbSNP
rs947417162 2300 dbSNP
rs1300733436 2301 dbSNP
rs941378855 2309 dbSNP
rs144378459 2310 dbSNP
rs796797632 2313 dbSNP
rs200678904 2314 dbSNP
rs905020410 2326 dbSNP
rs1174886217 2329 dbSNP
rs1224887045 2329 dbSNP
rs867943252 2338 dbSNP
rs1436601515 2363 dbSNP
rs1393348197 2367 dbSNP
rs1306846675 2369 dbSNP
rs1037050901 2376 dbSNP
rs897254153 2379 dbSNP
rs1475875783 2380 dbSNP
rs537620609 2382 dbSNP
rs1002065796 2384 dbSNP
rs1056717198 2389 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 221785.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgguAGUUUCAAUUUUCGGu 5'
              ||  ||  ||||||| 
Target 5' ----UCUCAG--AAAAGCCu 3'
 		1 - 14
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000394152.2 | 3UTR | UCUCAGAAAAGCCUCUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000394152.2 | 3UTR | UCUCAGAAAAGCCUCUAAGUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-3119 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130164 TXNIP thioredoxin interacting protein 2 4
MIRT364023 SDCBP syndecan binding protein 2 2
MIRT383920 BTG2 BTG anti-proliferation factor 2 2 2
MIRT397609 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT404072 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT443202 ECHDC3 enoyl-CoA hydratase domain containing 3 2 2
MIRT446469 THUMPD3 THUMP domain containing 3 2 2
MIRT446489 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT446849 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT463282 ZFX zinc finger protein, X-linked 2 4
MIRT478441 DAZAP2 DAZ associated protein 2 2 2
MIRT480447 C16orf72 chromosome 16 open reading frame 72 2 2
MIRT480632 BTBD3 BTB domain containing 3 2 6
MIRT487460 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487497 IL1F10 interleukin 1 family member 10 2 4
MIRT491967 USP37 ubiquitin specific peptidase 37 2 2
MIRT495620 PPP1R1C protein phosphatase 1 regulatory inhibitor subunit 1C 2 2
MIRT496151 RPS15A ribosomal protein S15a 2 2
MIRT498042 SNX5 sorting nexin 5 2 6
MIRT500546 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT503902 ZSCAN25 zinc finger and SCAN domain containing 25 2 2
MIRT513157 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT519070 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT519741 ZNF394 zinc finger protein 394 2 4
MIRT522733 LRP8 LDL receptor related protein 8 2 4
MIRT539402 ADIPOR2 adiponectin receptor 2 2 2
MIRT551660 KIAA1143 KIAA1143 2 4
MIRT559131 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559307 ATXN1 ataxin 1 2 2
MIRT559515 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT560771 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT562210 HMGB2 high mobility group box 2 2 2
MIRT562734 ZNF468 zinc finger protein 468 2 2
MIRT563070 EMC8 ER membrane protein complex subunit 8 2 2
MIRT563731 ZNF107 zinc finger protein 107 2 4
MIRT576719 Wars tryptophanyl-tRNA synthetase 2 2
MIRT612872 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT613214 CCDC85C coiled-coil domain containing 85C 2 4
MIRT613591 THSD7A thrombospondin type 1 domain containing 7A 2 2
MIRT614332 NANOS1 nanos C2HC-type zinc finger 1 2 4
MIRT614929 MARCH3 membrane associated ring-CH-type finger 3 2 2
MIRT616257 KANK4 KN motif and ankyrin repeat domains 4 2 2
MIRT617087 FPR1 formyl peptide receptor 1 2 2
MIRT617167 SLC16A5 solute carrier family 16 member 5 2 2
MIRT620350 WDR75 WD repeat domain 75 2 2
MIRT621041 SOX30 SRY-box 30 2 2
MIRT625936 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT636872 BCORL1 BCL6 corepressor like 1 2 2
MIRT637019 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT637299 ACTN2 actinin alpha 2 2 2
MIRT639734 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640811 ZMAT1 zinc finger matrin-type 1 2 2
MIRT642879 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT648116 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT655769 NPTX1 neuronal pentraxin 1 2 2
MIRT655801 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT659142 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT660327 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT662150 IPO11 importin 11 2 2
MIRT664741 METTL16 methyltransferase like 16 2 2
MIRT670134 HOXD12 homeobox D12 2 2
MIRT679027 ZNF419 zinc finger protein 419 2 2
MIRT695596 TMEM199 transmembrane protein 199 2 2
MIRT703345 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT704097 DST dystonin 2 2
MIRT711833 AMOTL2 angiomotin like 2 2 2
MIRT715820 ZNF598 zinc finger protein 598 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3119 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-3119 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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